RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13938
(245 letters)
>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
frugiperda) [TaxId: 7108]}
Length = 256
Score = 156 bits (395), Expect = 1e-47
Identities = 81/187 (43%), Positives = 112/187 (59%), Gaps = 14/187 (7%)
Query: 8 MPVAKDSAEYNMSHPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVSVY 67
MPV +++ YNM+H RG A++FNH+ F + ++ R G+ D NL LGF+V+V+
Sbjct: 5 MPVDRNAPYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF 64
Query: 68 TNPEFREITEILSNLSQEDHSDADCLVITVLTHGLGEQ-----------KLWLPFTADKC 116
N + EI + + ++ DHSDADCL++ VLTHG LW FTADKC
Sbjct: 65 PNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTADKC 124
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSL 176
TLAGKPK+FFIQAC+G +LDGG+ L + +Y+IP +ADFLIA+STV
Sbjct: 125 PTLAGKPKLFFIQACQGDRLDGGITL--SRTETDGSPSTSYRIPVHADFLIAFSTVPGY- 181
Query: 177 LACRGTK 183
+ R T
Sbjct: 182 FSWRNTT 188
>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 245
Score = 137 bits (346), Expect = 1e-40
Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 16 EYNMSHPRRGRALVFNHDEFQMD-NMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
+YNM+ + G+ ++ N+ F M R G+ D + L F +LGF+V VY + +
Sbjct: 2 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAK 61
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHGLGEQ-----------KLWLPFTADKCRTLAGKP 123
+ ++L S+EDH++A C +L+HG L F D+ +TL KP
Sbjct: 62 MQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKP 121
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSLLACRGTK 183
K+FFIQACRGT+LD G++ S +TDA YKIP ADFL AYSTV + R
Sbjct: 122 KLFFIQACRGTELDDGIQADSGPINDTDANPR-YKIPVEADFLFAYSTVPGY-YSWRSPG 179
>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 238
Score = 132 bits (333), Expect = 1e-38
Identities = 63/180 (35%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 16 EYNMSHPRRGRALVFNHDEFQ-MDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFRE 74
Y M +P G ++ N+ F MT R G+ D NL F L +EV + E
Sbjct: 8 SYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREE 67
Query: 75 ITEILSNLSQEDHSDADCLVITVLTHGLGEQ-----------KLWLPFTADKCRTLAGKP 123
I E++ ++S+EDHS V +L+HG K+ F D+CR+L GKP
Sbjct: 68 IVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKP 127
Query: 124 KIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSLLACRGTK 183
K+F IQACRGT+LD G+ KIP ADFL AYST + R +K
Sbjct: 128 KLFIIQACRGTELDCGIE---------------TKIPVDADFLYAYSTAPGY-YSWRNSK 171
>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
9606]}
Length = 277
Score = 121 bits (305), Expect = 3e-34
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 41/207 (19%)
Query: 17 YNMSHPRRGRALVFNHDEF-QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y +S G L+ N+ F + + R GS D + L F +L F V V + +++
Sbjct: 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKM 73
Query: 76 TEILSNLSQEDHSDADCLVITVLTHGLGE-------------------QKLWLPFTADKC 116
L L+++DH DC V+ +L+HG +K+ F C
Sbjct: 74 VLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSC 133
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANT--------------------ETDAGVNA 156
+L GKPK+FFIQAC G + D G + S + D
Sbjct: 134 PSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAI 193
Query: 157 YKIPSYADFLIAYSTVEDSLLACRGTK 183
+P+ +D ++YST ++ R K
Sbjct: 194 SSLPTPSDIFVSYSTFPGF-VSWRDPK 219
>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
9606]}
Length = 242
Score = 119 bits (298), Expect = 2e-33
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 17 YNMSHPRRGRALVFNHDEF--------QMDNMTPRPGSGADVKNLEAAFYALGFEVSVYT 68
Y M RG L+ N+ F ++ ++ R G+ D L F L FE+ +
Sbjct: 4 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHD 63
Query: 69 NPEFREITEILSNLSQEDHSDADCLVITVLTHG------------LGEQKLWLPFTADKC 116
+ +I EIL DHS+ DC + +L+HG +L FT KC
Sbjct: 64 DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKC 123
Query: 117 RTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSL 176
+LAGKPK+FFIQAC+G G+ + + + IP ADFL+ +TV +
Sbjct: 124 PSLAGKPKVFFIQACQGDNYQKGIPVET----------DTRYIPDEADFLLGMATVNNC- 172
Query: 177 LACRGTK 183
++ R
Sbjct: 173 VSYRNPA 179
>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 257
Score = 115 bits (288), Expect = 9e-32
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 17 YNMSHPRRGRALVFNHDEFQ-MDNMTPRPGSGADVKNLEAAFYALGFEVSVYTNPEFREI 75
Y + RG ALV ++ F + R G D L F LG++V V + +E+
Sbjct: 19 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEM 78
Query: 76 TEILSNLSQ-EDHSDADCLVITVLTHG------------LGEQKLWLPFTADKCRTLAGK 122
E L N +Q H D ++ +L+HG L Q+++ F C +L K
Sbjct: 79 QEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNK 138
Query: 123 PKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLIAYSTVEDSLLACRGT 182
PK+FFIQACRG + D GV + ++P+ +D + Y+ ++ + A R T
Sbjct: 139 PKMFFIQACRGDETDRGVDQQPK-----------MRLPTRSDMICGYACLKGT-AAMRNT 186
Query: 183 K 183
K
Sbjct: 187 K 187
>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a
cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
Length = 261
Score = 96.4 bits (239), Expect = 1e-24
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 34/196 (17%)
Query: 8 MPVAKDSAEYNMS--HPRRGRALVFNHDEFQMDNMTPRPGSGADVKNLEAAFYALGFEVS 65
+ K + Y + R AL+ ++EF D++ R G+ D+ + LG+ V
Sbjct: 20 IWKQKSAEIYPIMDKSSRTRLALIICNEEF--DSIPRRTGAEVDITGMTMLLQNLGYSVD 77
Query: 66 VYTNPEFREITEILSNLS-QEDHSDADCLVITVLTHGLGEQ-----------------KL 107
V N ++T L + + +H +D + ++HG+ E +
Sbjct: 78 VKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAI 137
Query: 108 WLPFTADKCRTLAGKPKIFFIQACRGTKLDGGVRLVSRANTETDAGVNAYKIPSYADFLI 167
+ C +L KPK+ IQA RG DA K DF+
Sbjct: 138 FNMLNTKNCPSLKDKPKVIIIQAARGDSPGV--------VWFKDA---IKKAHIEKDFIA 186
Query: 168 AYSTVEDSLLACRGTK 183
S+ D+ ++ R
Sbjct: 187 FCSSTPDN-VSWRHPT 201
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 25.8 bits (57), Expect = 1.5
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 57 FYA---LGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVITVLTHGLGEQKLWLPFTA 113
+Y G +V I +L + D +V+ L +++ LP+T
Sbjct: 1 YYWHQLEGLKVIDQGRQLLGVIDHLLETGAN------DVMVVKPCAGSLDDRERLLPYTG 54
Query: 114 D 114
Sbjct: 55 Q 55
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 25.7 bits (55), Expect = 5.4
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 42 PRPGSGADVKNLEAAFYALGFEVSVYTNPEFREITEILSNLSQEDHSDADCLVIT 96
+L LG + Y +I++ + ++ D L T
Sbjct: 181 DDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTET 235
>d1n02a_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc
ellipsosporum) [TaxId: 45916]}
Length = 102
Score = 24.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 127 FIQACRGTKLDGGVRLVSRANTE 149
FI+ CR T+L G L + T
Sbjct: 5 FIETCRNTQLAGSSELAAECKTR 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,475
Number of extensions: 37490
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 13
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)