BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13939
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SIP|B Chain B, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|D Chain D, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 109
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
FYSWR+ G+WF+Q LC ELA +G +LD+L+++T V +RVA+D ES HQQKQ
Sbjct: 25 FYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQKQ 84
Query: 86 I 86
I
Sbjct: 85 I 85
>pdb|3SIR|A Chain A, Crystal Structure Of Drice
pdb|3SIR|B Chain B, Crystal Structure Of Drice
pdb|3SIR|C Chain C, Crystal Structure Of Drice
pdb|3SIR|D Chain D, Crystal Structure Of Drice
Length = 259
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
FYSWR+ G+WF+Q LC ELA +G +LD+L+++T V +RVA+D ES HQQK
Sbjct: 181 GFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQK 240
Query: 85 QI 86
QI
Sbjct: 241 QI 242
>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
Length = 272
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
++SWR+ G+WF+Q LC+EL +GT+ D+L+++T V ++VALD ES + HQQK
Sbjct: 191 GYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQK 250
Query: 85 QI 86
Q+
Sbjct: 251 QV 252
>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1
pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1
Length = 310
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
++SWR+ G+WF+Q LC+EL +GT+ D+L+++T V ++VALD ES + HQQK
Sbjct: 219 GYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQK 278
Query: 85 QI 86
Q+
Sbjct: 279 QV 280
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 206 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 264
Query: 86 I 86
I
Sbjct: 265 I 265
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 183 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 241
Query: 86 I 86
I
Sbjct: 242 I 242
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 180 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 238
Query: 86 I 86
I
Sbjct: 239 I 239
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 180 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 238
Query: 86 I 86
I
Sbjct: 239 I 239
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 229 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 287
Query: 86 I 86
I
Sbjct: 288 I 288
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 231 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 289
Query: 86 I 86
I
Sbjct: 290 I 290
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 231 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 289
Query: 86 I 86
I
Sbjct: 290 I 290
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++K
Sbjct: 178 GYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKK 236
Query: 85 QI 86
QI
Sbjct: 237 QI 238
>pdb|1I51|B Chain B, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|D Chain D, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 105
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++K
Sbjct: 30 GYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKK 88
Query: 85 QI 86
QI
Sbjct: 89 QI 90
>pdb|2J33|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
FYSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GFYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|2QL5|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dmqd-Cho
pdb|2QL5|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dmqd-Cho
pdb|2QL7|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Iepd-Cho
pdb|2QL7|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Iepd-Cho
pdb|2QL9|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dqmd-Cho
pdb|2QL9|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Dqmd-Cho
pdb|2QLB|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Esmd-Cho
pdb|2QLB|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Esmd-Cho
pdb|2QLF|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-dnld-cho
pdb|2QLF|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-dnld-cho
pdb|2QLJ|B Chain B, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Wehd-Cho
pdb|2QLJ|D Chain D, Crystal Structure Of Caspase-7 With Inhibitor
Ac-Wehd-Cho
pdb|3EDR|B Chain B, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|D Chain D, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|B Chain B, Crystal Structure Of Caspase-7 Incomplex With
Acetyl-Yvad- Cho
pdb|3IBC|D Chain D, Crystal Structure Of Caspase-7 Incomplex With
Acetyl-Yvad- Cho
pdb|3IBF|B Chain B, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|D Chain D, Crystal Structure Of Unliganded Caspase-7
Length = 97
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 23 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 81
Query: 86 I 86
I
Sbjct: 82 I 82
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++K
Sbjct: 178 GYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKK 236
Query: 85 QI 86
QI
Sbjct: 237 QI 238
>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHK|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++K
Sbjct: 172 GYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKK 230
Query: 85 QI 86
QI
Sbjct: 231 QI 232
>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR P G+WF+Q LC L + G L+++ I+TRV+ RVA ES +D + H++K
Sbjct: 162 GYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKK 220
Query: 85 QI 86
QI
Sbjct: 221 QI 222
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|2XYG|B Chain B, Caspase-3:cas329306
pdb|2XYH|B Chain B, Caspase-3:cas60254719
pdb|2XYP|B Chain B, Caspase-3:cas26049945
Length = 93
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 19 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 77
Query: 86 I 86
I
Sbjct: 78 I 78
>pdb|1NME|B Chain B, Structure Of Casp-3 With Tethered Salicylate
Length = 92
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 18 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 76
Query: 86 I 86
I
Sbjct: 77 I 77
>pdb|2CJX|B Chain B, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-ray Structure Analysis
Length = 103
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 29 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 87
Query: 86 I 86
I
Sbjct: 88 I 88
>pdb|2CJY|B Chain B, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2DKO|B Chain B, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2C1E|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2K|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2M|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2O|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2CDR|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNK|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNL|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNN|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNO|B Chain B, Crystal Structures Of Caspase-3 In Complex With
Aza-peptide Epoxide Inhibitors
Length = 103
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 29 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 87
Query: 86 I 86
I
Sbjct: 88 I 88
>pdb|3EDQ|B Chain B, Crystal Structure Of Caspase-3 With Inhibitor
Ac-Ldesd-Cho
pdb|3GJQ|B Chain B, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJQ|D Chain D, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|B Chain B, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|D Chain D, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|B Chain B, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|D Chain D, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|B Chain B, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|D Chain D, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3EDQ|D Chain D, Crystal Structure Of Caspase-3 With Inhibitor
Ac-Ldesd-Cho
pdb|4DCJ|B Chain B, Crystal Structure Of Caspase 3, L168d Mutant
pdb|4DCJ|E Chain E, Crystal Structure Of Caspase 3, L168d Mutant
pdb|4DCO|B Chain B, Crystal Structure Of Caspase 3, L168y Mutant
pdb|4DCO|E Chain E, Crystal Structure Of Caspase 3, L168y Mutant
pdb|4DCP|B Chain B, Crystal Structure Of Caspase 3, L168f Mutant
pdb|4DCP|E Chain E, Crystal Structure Of Caspase 3, L168f Mutant
Length = 108
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 28 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 86
Query: 86 I 86
I
Sbjct: 87 I 87
>pdb|2H5I|B Chain B, Crystal Structure Of Caspase-3 With Inhibitor
Ac-Devd-Cho
pdb|2H5J|B Chain B, Crystal Strusture Of Caspase-3 With Inhibitor
Ac-Dmqd-Cho
pdb|2H5J|D Chain D, Crystal Strusture Of Caspase-3 With Inhibitor
Ac-Dmqd-Cho
pdb|2H65|B Chain B, Crystal Strusture Of Caspase-3 With Inhibitor
Ac-vdvad-cho
pdb|2H65|D Chain D, Crystal Strusture Of Caspase-3 With Inhibitor
Ac-vdvad-cho
Length = 95
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 20 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 78
Query: 86 I 86
I
Sbjct: 79 I 79
>pdb|2XZD|B Chain B, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|D Chain D, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZT|B Chain B, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|D Chain D, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2Y0B|B Chain B, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|D Chain D, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 118
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 28 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 86
Query: 86 I 86
I
Sbjct: 87 I 87
>pdb|1I3O|B Chain B, Crystal Structure Of The Complex Of Xiap-Bir2 And
Caspase 3
pdb|1I3O|D Chain D, Crystal Structure Of The Complex Of Xiap-Bir2 And
Caspase 3
pdb|1RHJ|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHJ|D Chain D, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
Length = 110
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 28 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 86
Query: 86 I 86
I
Sbjct: 87 I 87
>pdb|1PAU|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho
pdb|1RE1|B Chain B, Crystal Structure Of Caspase-3 With A Nicotinic Acid
Aldehyde Inhibitor
pdb|1RHK|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
Phenyl-Propyl- Ketone Inhibitor
pdb|1RHM|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHM|D Chain D, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHQ|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHQ|E Chain E, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHR|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
Cinnamic Acid Methyl Ester Inhibitor
pdb|1RHU|B Chain B, Crystal Structure Of The Complex Of Caspase-3 With A
5,6,7 Tricyclic Peptidomimetic Inhibitor
Length = 102
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 28 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 86
Query: 86 I 86
I
Sbjct: 87 I 87
>pdb|1GFW|B Chain B, The 2.8 Angstrom Crystal Structure Of Caspase-3 (Apopain
Or Cpp32)in Complex With An Isatin Sulfonamide
Inhibitor
Length = 97
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 23 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 81
Query: 86 I 86
I
Sbjct: 82 I 82
>pdb|3KJF|B Chain B, Caspase 3 Bound To A Covalent Inhibitor
Length = 109
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 28 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 86
Query: 86 I 86
I
Sbjct: 87 I 87
>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
Length = 249
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
pdb|3H0E|B Chain B, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
Length = 255
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
pdb|1CP3|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
Length = 277
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(Pro)caspase-3
Length = 250
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(pro)caspase-3
Length = 250
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3
Length = 250
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMQ|B Chain B, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMS|A Chain A, Caspase-3 Tethered To Irreversible Inhibitor
pdb|1NMS|B Chain B, Caspase-3 Tethered To Irreversible Inhibitor
Length = 249
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of
Unliganded Human Caspase-3
Length = 257
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA + ES++ ++ H +KQ
Sbjct: 203 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATF-HAKKQ 261
Query: 86 I 86
I
Sbjct: 262 I 262
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+YSWR P G+WF+Q L L + G L+++ I+TRV+ RVA ES +D + H++KQ
Sbjct: 230 YYSWRSPGRGSWFVQALSSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHF-HEKKQ 288
Query: 86 I 86
I
Sbjct: 289 I 289
>pdb|3PD0|A Chain A, Caspase-3 E246a
Length = 250
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R+VA ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATAFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|3PD1|A Chain A, Caspase-3 K242a
Length = 250
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R VA + ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRAVATEFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant
Length = 250
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84
+YSWR+ ++G+WFIQ LC L KL+ + I+TRV+R VA ES++ ++ H +K
Sbjct: 174 GYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRAVATAFESFSFDATF-HAKK 232
Query: 85 QI 86
QI
Sbjct: 233 QI 234
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 216 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 257
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 216 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 257
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 196 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 237
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 209 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 250
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 193 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 234
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 194 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 235
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRV 66
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V
Sbjct: 194 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKV 234
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRV 66
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V
Sbjct: 194 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKV 234
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRV 66
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V
Sbjct: 197 YYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKV 237
>pdb|3P4U|B Chain B, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|D Chain D, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 23 GYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 65
>pdb|3QNW|B Chain B, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|D Chain D, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|F Chain F, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|H Chain H, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 100
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 22 GYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 64
>pdb|3P45|B Chain B, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|D Chain D, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|F Chain F, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|H Chain H, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|J Chain J, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|L Chain L, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|N Chain N, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|P Chain P, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 108
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 25 SFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+YS R NG+W+IQ LC+ L G+ L+ ++T V+R+V+
Sbjct: 23 GYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVS 65
>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8
Length = 266
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 198 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 238
>pdb|2C2Z|B Chain B, Crystal Structure Of Caspase-8 In Complex With
Aza-Peptide Michael Acceptor Inhibitor
Length = 106
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 38 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 78
>pdb|3H11|B Chain B, Zymogen Caspase-8:c-Flipl Protease Domain Complex
Length = 271
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 195 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 235
>pdb|2Y1L|B Chain B, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|D Chain D, Caspase-8 In Complex With Darpin-8.4
Length = 104
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 36 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 76
>pdb|1I4E|B Chain B, Crystal Structure Of The Caspase-8P35 COMPLEX
pdb|2FUN|B Chain B, Alternative P35-Caspase-8 Complex
pdb|2FUN|D Chain D, Alternative P35-Caspase-8 Complex
Length = 258
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 190 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 230
>pdb|1QTN|B Chain B, Crystal Structure Of The Complex Of Caspase-8 With The
Tetrapeptide Inhibitor Ace-Ietd-Aldehyde
pdb|3KJN|B Chain B, Caspase 8 Bound To A Covalent Inhibitor
pdb|3KJQ|B Chain B, Caspase 8 With Covalent Inhibitor
Length = 95
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 27 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 67
>pdb|1QDU|B Chain B, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|D Chain D, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|F Chain F, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|H Chain H, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|J Chain J, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|L Chain L, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
Length = 88
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 22 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 62
>pdb|1F9E|B Chain B, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|D Chain D, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|F Chain F, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|H Chain H, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|J Chain J, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|L Chain L, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
Length = 89
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVA 67
S+R+P GTW+IQ LCQ L + + D+L+I+T V+ V+
Sbjct: 22 SYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVS 62
>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
Length = 284
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVAL 68
F SWR P++G+W+++ L DL S++ RV+ V++
Sbjct: 213 FVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSV 255
>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 277
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVAL 68
F SWR P++G+W+++ L DL S++ RV+ V++
Sbjct: 212 FVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSV 254
>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|B Chain B, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|C Chain C, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|D Chain D, Crystal Structure Of A Dimeric Caspase-9
Length = 278
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVAL 68
F SWR P++G+W+++ L DL S++ RV+ V++
Sbjct: 213 FVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSV 255
>pdb|2FP3|A Chain A, Crystal Structure Of The Drosophila Initiator Caspase
Dronc
Length = 316
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
+ + R + G+W+IQ CQ +AD DL I+ + S V
Sbjct: 243 YVTHRDLDTGSWYIQKFCQVMADHAHDTDLEDILKKTSEAVG 284
>pdb|2FQQ|B Chain B, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
pdb|2H48|B Chain B, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
Length = 88
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYAASADVEEIFRKV 57
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 237 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 271
>pdb|2H54|B Chain B, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
>pdb|3D6F|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|3D6H|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 89
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 24 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 58
>pdb|1IBC|B Chain B, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
>pdb|1ICE|B Chain B, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|B Chain B, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
pdb|1SC1|B Chain B, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|B Chain B, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|B Chain B, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|1RWK|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-
3-Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2HBQ|B Chain B, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBR|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4Y|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|3NS7|B Chain B, Succinic Acid Amides As P2-P3 Replacements For
Inhibitors Of Interleukin-1beta Converting Enzyme (Ice
Or Caspase 1)
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
>pdb|3D6M|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 89
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 24 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 58
>pdb|2HBY|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
>pdb|2H4W|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 28 SWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRV 62
SWRHP G+ FI L + + + D+ I +V
Sbjct: 23 SWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,319,837
Number of Sequences: 62578
Number of extensions: 64627
Number of successful extensions: 173
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 82
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)