Query psy13939
Match_columns 86
No_of_seqs 139 out of 595
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 15:28:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql9_B Caspase-7; cysteine pro 100.0 3.2E-33 1.1E-37 179.0 6.8 76 10-86 3-82 (97)
2 2dko_B Caspase-3; low barrier 100.0 8.2E-33 2.8E-37 179.1 7.8 79 7-86 6-88 (103)
3 2xzd_B Caspase-3; hydrolase-pr 100.0 3.9E-32 1.3E-36 180.2 6.5 77 9-86 7-87 (118)
4 1pyo_B Caspase-2; apoptosis, c 100.0 4.5E-32 1.5E-36 176.2 6.0 78 7-86 4-85 (105)
5 3rjm_B Caspase-2; caspase-2, c 100.0 6.3E-32 2.2E-36 178.9 6.8 76 9-86 7-86 (117)
6 1qtn_B Caspase-8; apoptosis, d 100.0 9.5E-31 3.2E-35 167.3 5.6 70 10-86 5-79 (95)
7 1sc3_B Interleukin-1 beta conv 100.0 8.5E-30 2.9E-34 161.2 5.4 65 11-86 2-70 (88)
8 3sir_A Caspase; hydrolase; 2.6 99.9 2E-26 6.8E-31 168.2 6.1 77 10-86 162-242 (259)
9 3od5_A Caspase-6; caspase doma 99.9 4.3E-26 1.5E-30 167.9 6.1 76 10-86 173-252 (278)
10 4ehd_A Caspase-3; caspase, apo 99.9 1.6E-25 5.4E-30 165.2 7.2 76 10-86 183-262 (277)
11 1m72_A Caspase-1; caspase, cys 99.9 1.6E-25 5.5E-30 164.5 6.2 76 11-86 173-252 (272)
12 2nn3_C Caspase-1; cysteine pro 99.9 4.3E-25 1.5E-29 165.3 7.4 77 10-86 200-280 (310)
13 2j32_A Caspase-3; Pro-caspase3 99.9 5.5E-25 1.9E-29 159.6 6.4 75 11-86 156-234 (250)
14 1f1j_A Caspase-7 protease; cas 99.9 5.3E-24 1.8E-28 158.9 6.9 75 11-86 212-290 (305)
15 1nw9_B Caspase 9, apoptosis-re 99.9 1.3E-23 4.3E-28 154.0 7.3 59 10-68 192-254 (277)
16 3h11_B Caspase-8; cell death, 99.9 4.8E-23 1.6E-27 151.2 5.9 70 10-86 173-247 (271)
17 2fp3_A Caspase NC; apoptosis, 99.9 1.5E-22 5.2E-27 151.4 6.3 64 9-72 222-289 (316)
18 3h11_A CAsp8 and FADD-like apo 99.9 2.8E-22 9.5E-27 147.7 6.1 64 10-75 183-250 (272)
19 3e4c_A Caspase-1; zymogen, inf 99.8 1.5E-21 5.2E-26 145.4 6.1 57 11-67 216-276 (302)
20 3uoa_B Mucosa-associated lymph 99.5 2.4E-15 8.2E-20 115.7 3.8 63 12-86 141-210 (390)
21 3bij_A Uncharacterized protein 80.0 3.2 0.00011 29.5 5.1 50 16-66 198-251 (285)
22 2kzs_A Death-associated protei 71.3 2.5 8.7E-05 26.4 2.2 19 34-52 72-90 (94)
23 3aj1_A Cellulose synthase oper 70.5 1.8 6.2E-05 29.8 1.6 35 36-70 22-56 (167)
24 1req_B Methylmalonyl-COA mutas 67.9 1.6 5.5E-05 35.3 1.0 22 30-51 395-416 (637)
25 1req_A Methylmalonyl-COA mutas 65.3 2 6.7E-05 35.4 1.0 22 30-51 399-420 (727)
26 2xij_A Methylmalonyl-COA mutas 65.0 2 6.8E-05 35.5 1.0 22 30-51 412-433 (762)
27 2z9e_A Cellulose synthase oper 45.0 14 0.00046 25.4 2.4 45 26-70 12-56 (167)
28 1nc5_A Hypothetical protein YT 32.3 35 0.0012 24.8 3.1 46 22-67 192-251 (373)
29 3jrn_A AT1G72930 protein; TIR 32.2 8.2 0.00028 26.2 -0.3 28 23-50 9-36 (176)
30 1bm4_A Protein (moloney murine 28.1 43 0.0015 16.9 2.1 17 33-49 13-29 (32)
31 4gnt_B Carbohydrate-responsive 21.9 27 0.00091 16.7 0.5 7 36-42 13-19 (26)
No 1
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=99.98 E-value=3.2e-33 Score=178.95 Aligned_cols=76 Identities=42% Similarity=0.742 Sum_probs=69.7
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQ 85 (86)
..++||.+|||| |+|||+||||+..||||||+||++|++++++.||++|||+||++|+..|++.+.. +..+++||
T Consensus 3 ~~~~iP~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~-~~~~~~kQ 81 (97)
T 2ql9_B 3 PRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDD-PHFHEKKQ 81 (97)
T ss_dssp ---CBCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-GGGTTCBC
T ss_pred CCcccCCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhccccCC-cccCCceE
Confidence 567899999999 9999999999999999999999999999999999999999999999999988754 78899999
Q ss_pred C
Q psy13939 86 I 86 (86)
Q Consensus 86 m 86 (86)
|
T Consensus 82 ~ 82 (97)
T 2ql9_B 82 I 82 (97)
T ss_dssp C
T ss_pred e
Confidence 8
No 2
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=99.98 E-value=8.2e-33 Score=179.12 Aligned_cols=79 Identities=38% Similarity=0.613 Sum_probs=73.0
Q ss_pred ccccccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCcccccc
Q psy13939 7 LSKMYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQ 82 (86)
Q Consensus 7 ~~~~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~ 82 (86)
.+....+||.+|||| |+|||+||||+..||||||+||++|++++++.||++|||+||++|+..|++.+.. +..++
T Consensus 6 ~~~~~~~iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~~~~~~~-~~~~~ 84 (103)
T 2dko_B 6 DDMACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFD-ATFHA 84 (103)
T ss_dssp SSCSSCCCCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-GGGTT
T ss_pred cCCcccccCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhcccCCC-CccCC
Confidence 334678999999999 9999999999999999999999999999999999999999999999999988544 78899
Q ss_pred ccCC
Q psy13939 83 QKQI 86 (86)
Q Consensus 83 ~KQm 86 (86)
+|||
T Consensus 85 ~kQ~ 88 (103)
T 2dko_B 85 KKQI 88 (103)
T ss_dssp CBCC
T ss_pred ceEe
Confidence 9998
No 3
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=99.97 E-value=3.9e-32 Score=180.19 Aligned_cols=77 Identities=39% Similarity=0.644 Sum_probs=71.1
Q ss_pred ccccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCcccccccc
Q psy13939 9 KMYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84 (86)
Q Consensus 9 ~~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~K 84 (86)
...++||.+|||| |+|||+||||+..||||||+||++|++++++.||++|||+||++|+..|++.+.. +..+++|
T Consensus 7 ~~~~~iP~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~~es~~~~-~~~~~~K 85 (118)
T 2xzd_B 7 MACHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFD-ATFHAKK 85 (118)
T ss_dssp --CCEECTTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-GGGTTCB
T ss_pred CcccccCCCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhccccCC-CccCCce
Confidence 3568999999999 9999999999999999999999999999999999999999999999999988654 7889999
Q ss_pred CC
Q psy13939 85 QI 86 (86)
Q Consensus 85 Qm 86 (86)
||
T Consensus 86 Q~ 87 (118)
T 2xzd_B 86 QI 87 (118)
T ss_dssp CC
T ss_pred Ee
Confidence 98
No 4
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=99.97 E-value=4.5e-32 Score=176.15 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=69.0
Q ss_pred ccccccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCcccccc
Q psy13939 7 LSKMYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQ 82 (86)
Q Consensus 7 ~~~~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~ 82 (86)
++...+.||.+|||| |+|||+||||+..||||||+||++|++++++.||++|||+||++|+. .++.++. +.+++
T Consensus 4 ~~~~~~~iP~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~-~~~~~~~-~~~~~ 81 (105)
T 1pyo_B 4 EKLPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIKD-REGYAPG-TEFHR 81 (105)
T ss_dssp ---CCCEECSSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHT-CCCCCTT-STTTT
T ss_pred CCCcccCcCCCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh-hhccCCC-ccccC
Confidence 445678899999999 99999999999999999999999999999999999999999999985 4666554 67889
Q ss_pred ccCC
Q psy13939 83 QKQI 86 (86)
Q Consensus 83 ~KQm 86 (86)
+|||
T Consensus 82 ~kQ~ 85 (105)
T 1pyo_B 82 CKEM 85 (105)
T ss_dssp CBCC
T ss_pred ceEC
Confidence 9997
No 5
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=99.97 E-value=6.3e-32 Score=178.95 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=70.8
Q ss_pred ccccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCcccccccc
Q psy13939 9 KMYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84 (86)
Q Consensus 9 ~~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~K 84 (86)
...++||.+|||| |+|||+||||+..||||||+||++|++++++.||++|||+||++|+ ++++.++. ...+++|
T Consensus 7 ~~~~~iP~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va-~~~~~~~~-~~~~~~K 84 (117)
T 3rjm_B 7 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIK-DREGYAPG-TEFHRCK 84 (117)
T ss_dssp -CCCCBCSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH-HCCCCCTT-STTTTCB
T ss_pred CcCccCCCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhhccCCC-CccCCeE
Confidence 5678999999999 9999999999999999999999999999999999999999999998 88888776 5789999
Q ss_pred CC
Q psy13939 85 QI 86 (86)
Q Consensus 85 Qm 86 (86)
||
T Consensus 85 Qm 86 (117)
T 3rjm_B 85 EM 86 (117)
T ss_dssp CC
T ss_pred Ee
Confidence 98
No 6
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=99.96 E-value=9.5e-31 Score=167.30 Aligned_cols=70 Identities=31% Similarity=0.504 Sum_probs=62.9
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHhhhhccCCCcccccccc
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKL-DLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~-dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~K 84 (86)
...+||.+|||| |+|||+||||+..||||||+||++|++++++. ||++|||+||++|+..+++ .+++|
T Consensus 5 ~~~~iP~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~-------~~~~k 77 (95)
T 1qtn_B 5 QTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDK-------KNMGK 77 (95)
T ss_dssp -CCCCCTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCCBT-------TTTBB
T ss_pred cccccCCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhhcc-------CCCce
Confidence 467899999999 99999999999999999999999999999998 9999999999999975443 36678
Q ss_pred CC
Q psy13939 85 QI 86 (86)
Q Consensus 85 Qm 86 (86)
||
T Consensus 78 Q~ 79 (95)
T 1qtn_B 78 QM 79 (95)
T ss_dssp CC
T ss_pred Ee
Confidence 86
No 7
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=99.96 E-value=8.5e-30 Score=161.17 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=59.9
Q ss_pred ccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccCC
Q psy13939 11 YYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQI 86 (86)
Q Consensus 11 ~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQm 86 (86)
..++|.+|||| |+|||+||||+.+||||||+||++|++++++.||++||++||++|+. .+++|||
T Consensus 2 ~~~ip~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~-----------~~~~kQ~ 70 (88)
T 1sc3_B 2 IKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ-----------PDGRAQM 70 (88)
T ss_dssp CCCCCSSCSEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCS-----------CCSSCCC
T ss_pred ccccCCCCCEEEEEeCCCCCEeeEcCCCCCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhc-----------cCCceEc
Confidence 46899999999 99999999999999999999999999999999999999999999962 3567886
No 8
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.93 E-value=2e-26 Score=168.16 Aligned_cols=77 Identities=47% Similarity=0.761 Sum_probs=60.2
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQ 85 (86)
....+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+.+|++.++..+..+++||
T Consensus 162 ~~~~ip~~aD~Li~yST~pG~vs~r~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~~s~~~~~~~~~~~kQ 241 (259)
T 3sir_A 162 MSYKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQKQ 241 (259)
T ss_dssp -CEECCCCTTEEEEEEEECCSCCCSSCCCSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTTC--------------C
T ss_pred ccccCCCCCCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcccCCcccccCCceE
Confidence 467899999999 9999999999999999999999999999999999999999999999999999887778899999
Q ss_pred C
Q psy13939 86 I 86 (86)
Q Consensus 86 m 86 (86)
|
T Consensus 242 ~ 242 (259)
T 3sir_A 242 I 242 (259)
T ss_dssp C
T ss_pred e
Confidence 7
No 9
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.92 E-value=4.3e-26 Score=167.94 Aligned_cols=76 Identities=29% Similarity=0.479 Sum_probs=70.9
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQ 85 (86)
....+|.+|||| |+|||+|||++..||||||+||++|+++++..||++|||+||++|+..+++.+++ +..+++||
T Consensus 173 ~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~-~~~~~~kQ 251 (278)
T 3od5_A 173 SVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKD-PSAIGKKQ 251 (278)
T ss_dssp -CCCEETTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCCCCCSS-GGGTTCBC
T ss_pred cccccCCCCCeEEEEeCCCCeEEecCCCCCcHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhcCCC-ccccCceE
Confidence 456899999999 9999999999999999999999999999999999999999999999999998887 67779999
Q ss_pred C
Q psy13939 86 I 86 (86)
Q Consensus 86 m 86 (86)
|
T Consensus 252 ~ 252 (278)
T 3od5_A 252 V 252 (278)
T ss_dssp C
T ss_pred c
Confidence 8
No 10
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.92 E-value=1.6e-25 Score=165.24 Aligned_cols=76 Identities=39% Similarity=0.658 Sum_probs=71.0
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQ 85 (86)
....+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+.++++.+++ +..+++||
T Consensus 183 ~~~~ip~~aD~Li~yST~pG~vs~r~~~~GS~fIq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~es~~~~-~~~~~~kQ 261 (277)
T 4ehd_A 183 ACHKIPVEADFLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFD-ATFHAKKQ 261 (277)
T ss_dssp --CCCCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-GGGTTCBC
T ss_pred cccccCCCCCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhccCC-CCcCCceE
Confidence 457899999999 9999999999999999999999999999999999999999999999999998876 78899999
Q ss_pred C
Q psy13939 86 I 86 (86)
Q Consensus 86 m 86 (86)
|
T Consensus 262 ~ 262 (277)
T 4ehd_A 262 I 262 (277)
T ss_dssp C
T ss_pred e
Confidence 8
No 11
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.92 E-value=1.6e-25 Score=164.45 Aligned_cols=76 Identities=39% Similarity=0.697 Sum_probs=72.1
Q ss_pred ccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccCC
Q psy13939 11 YYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQI 86 (86)
Q Consensus 11 ~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQm 86 (86)
.+.+|.+|||| |+|||+|||++..||||||+||++|.+++++.||++|||+||++|+.+|++.+|..+.++++|||
T Consensus 173 ~~~iP~~aD~Li~ysT~pG~vs~r~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~~s~~~~~~~~~~~kQ~ 252 (272)
T 1m72_A 173 SYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQKQV 252 (272)
T ss_dssp CEEECTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCTTCGGGTTCBCC
T ss_pred ccccCCCCCEEEEEeCCCCcEeecCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccCCceEc
Confidence 46899999999 99999999999999999999999999999999999999999999999999998877788999997
No 12
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.91 E-value=4.3e-25 Score=165.33 Aligned_cols=77 Identities=39% Similarity=0.685 Sum_probs=72.3
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQ 85 (86)
..+.+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+.+|++.+|..+.++++||
T Consensus 200 ~~~~iP~~aD~LiayST~pG~vS~R~~~~GSwFIqaL~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~s~~p~~~~~~~~kQ 279 (310)
T 2nn3_C 200 TSYRIPVHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQKQ 279 (310)
T ss_dssp -CCCCCCSTTEEEEECCCCCEEESSSSEEEEHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHTTSSSCCSSCSCCSCC
T ss_pred cccccCCCCCEEEEEeCCCCceeecCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccCCceE
Confidence 356899999999 9999999999999999999999999999999999999999999999999999877678899999
Q ss_pred C
Q psy13939 86 I 86 (86)
Q Consensus 86 m 86 (86)
|
T Consensus 280 ~ 280 (310)
T 2nn3_C 280 V 280 (310)
T ss_dssp C
T ss_pred c
Confidence 7
No 13
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.91 E-value=5.5e-25 Score=159.58 Aligned_cols=75 Identities=40% Similarity=0.670 Sum_probs=69.9
Q ss_pred ccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccCC
Q psy13939 11 YYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQI 86 (86)
Q Consensus 11 ~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQm 86 (86)
...+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+..|++.+.. +..+++|||
T Consensus 156 ~~~ip~~aD~Li~ysT~pG~vs~r~~~~gS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~~~~~~~~~-~~~~~~kQ~ 234 (250)
T 2j32_A 156 CHKIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFD-ATFHAKKQI 234 (250)
T ss_dssp -CCCCTTTTEEEEESSCTEECCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-TTTTTCBCC
T ss_pred ccccCCCCCEEEEEeCCCccEEecCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccCC-cCCCCceEc
Confidence 56799999999 9999999999999999999999999999999999999999999999999988654 788899997
No 14
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.89 E-value=5.3e-24 Score=158.94 Aligned_cols=75 Identities=43% Similarity=0.763 Sum_probs=69.5
Q ss_pred ccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCccccccccCC
Q psy13939 11 YYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQI 86 (86)
Q Consensus 11 ~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~KQm 86 (86)
...+|.++||| |+|||+|||++..||||||+||++|.+++++.||++|||+||++|+..+++.+.+ +..+++|||
T Consensus 212 ~~~ip~~aD~LiayST~pG~vs~r~~~~GS~FiqaL~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~~~-~~~~~~kQ~ 290 (305)
T 1f1j_A 212 RYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDD-PHFHEKKQI 290 (305)
T ss_dssp --CBCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-GGGSSCBCC
T ss_pred ccccCCCCCEEEEEECCCCeeccCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhccccc-cccCCceEC
Confidence 46899999999 9999999999999999999999999999999999999999999999999988754 788999997
No 15
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.89 E-value=1.3e-23 Score=153.97 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=55.2
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVAL 68 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~ 68 (86)
....+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+.
T Consensus 192 ~~~~ip~~aD~Li~ysT~pG~vs~R~~~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~~~V~~ 254 (277)
T 1nw9_B 192 AISSLPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSV 254 (277)
T ss_dssp --CCCCCSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHT
T ss_pred cccccCCCCCEEEEEcCCCCeEEEcCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhh
Confidence 457899999999 99999999999999999999999999999999999999999999974
No 16
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.87 E-value=4.8e-23 Score=151.21 Aligned_cols=70 Identities=31% Similarity=0.488 Sum_probs=59.0
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHhhhhccCCCcccccccc
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGT-KLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~-~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~K 84 (86)
....+|.+|||| |+|||+|||++..||||||+||++|.++++ ..||++|||+||++|+.. . ...+++|
T Consensus 173 ~~~~iP~~aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~~l~~~~~~~~dl~~ilt~Vn~~V~~~-~------~~~~~~k 245 (271)
T 3h11_B 173 QTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNK-D------DKKNMGK 245 (271)
T ss_dssp CCCCSCSSSSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHTC-------------CC
T ss_pred cccccCCCCceEEEEECCCCceeecCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc-c------cCCCCCE
Confidence 345799999999 999999999999999999999999999988 899999999999999832 1 2356788
Q ss_pred CC
Q psy13939 85 QI 86 (86)
Q Consensus 85 Qm 86 (86)
||
T Consensus 246 Q~ 247 (271)
T 3h11_B 246 QM 247 (271)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 17
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.86 E-value=1.5e-22 Score=151.45 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=59.0
Q ss_pred ccccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhc
Q psy13939 9 KMYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMES 72 (86)
Q Consensus 9 ~~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s 72 (86)
.....+|.+|||| |+|||+|||++..||||||+||++|.++++..||++|||+||++|+..+++
T Consensus 222 ~~~~~iP~~aD~Li~yST~pG~vS~R~~~~GSwFIq~L~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~ 289 (316)
T 2fp3_A 222 SPSTNVPSLADTLVCYANTPGYVTHRDLDTGSWYIQKFCQVMADHAHDTDLEDILKKTSEAVGNKRTK 289 (316)
T ss_dssp --CCCCCCCCSEEEEECCCSCCCBTTTBCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHSSSSS
T ss_pred ccccccCCCCCEEEEEeCCCCceeccCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhcc
Confidence 4567899999999 999999999999999999999999999999999999999999999987755
No 18
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=99.86 E-value=2.8e-22 Score=147.65 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=55.6
Q ss_pred cccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCC
Q psy13939 10 MYYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYND 75 (86)
Q Consensus 10 ~~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~ 75 (86)
...++|.+|||| |+|||+|||++..||||||+||++|++++ ..||++|||+||++|+ ++++..+
T Consensus 183 ~~~~iP~~aDfL~~yST~pg~~s~R~~~~GSwfIq~Lc~~l~~~~-~~dl~~ilt~Vn~~V~-~~~~~~~ 250 (272)
T 3h11_A 183 GLCTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQER-KRPLLDLHIELNGYMY-DWNSRVS 250 (272)
T ss_dssp ----CCTTCSEEEEEEEEEGGGTSSTTCCCCHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHH-HHHTTSC
T ss_pred ccccCCCCCCEEEEEeccCCeEEEEeCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH-HhhccCC
Confidence 457899999999 99999999999999999999999999975 8899999999999995 7776644
No 19
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=145.38 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=54.3
Q ss_pred ccCCCCCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy13939 11 YYKFDEEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67 (86)
Q Consensus 11 ~~~iP~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va 67 (86)
...+|.+|||| |+|||+|||++..||||||+||++|+++++..||++||++||+.|.
T Consensus 216 ~~~ip~~aDfLi~yST~pG~vS~R~~~~GSwFIqaL~~~l~~~~~~~dl~~il~~V~~~v~ 276 (302)
T 3e4c_A 216 IKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 276 (302)
T ss_dssp HHTSCSSCSEEEEEECCCCCCCSSSTTCCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTS
T ss_pred ccccCCCCCEEEEEeCCCCceeecCCCCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 45799999999 9999999999999999999999999999999999999999999885
No 20
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.54 E-value=2.4e-15 Score=115.71 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=55.1
Q ss_pred cCCCCCCccc----cCCCccccCCC---CCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccCCCcccccccc
Q psy13939 12 YKFDEEDDDD----VFVSFYSWRHP---ENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQK 84 (86)
Q Consensus 12 ~~iP~~aD~L----T~~g~~s~R~~---~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~~s~~~~~~~~~~~K 84 (86)
..+|..+||| |.|||+|||++ ..||||||+||+.|++ ..+|++|||+||++|+.. +.+++|
T Consensus 141 ~~ip~~ad~Li~yAT~pG~~A~r~~~d~~~gS~FtqaL~e~L~~---~~dl~~LLt~Vn~~Va~~---------~~~~~K 208 (390)
T 3uoa_B 141 DALKVTANIVFGYATCQGAEAFEIQHSGLANGIFMKFLKDRLLE---DKKITVLLDEVAEDMGKC---------HLTKGK 208 (390)
T ss_dssp CCCCCCSCEEEEESSCTTCCCEECSSCTTCCCHHHHHHTTTTTC---SSCHHHHHHHHHHHHTTC---------TTTTTT
T ss_pred ccCcccCCcEEEEEcCCCcEeeecCCCCCCCCHHHHHHHHHHcc---CCCHHHHHHHHHHHHhhc---------cccCCc
Confidence 5789999999 99999999986 5899999999999987 789999999999999731 345678
Q ss_pred CC
Q psy13939 85 QI 86 (86)
Q Consensus 85 Qm 86 (86)
||
T Consensus 209 Q~ 210 (390)
T 3uoa_B 209 QA 210 (390)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 21
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=79.99 E-value=3.2 Score=29.53 Aligned_cols=50 Identities=14% Similarity=-0.085 Sum_probs=40.9
Q ss_pred CCCccc----cCCCccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy13939 16 EEDDDD----VFVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRV 66 (86)
Q Consensus 16 ~~aD~L----T~~g~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~V 66 (86)
..++++ +.++-+|+-. ...++|-.+|++.|+..+....+.+|+..|.+.+
T Consensus 198 ~~~~~i~lsa~~~~q~A~e~-~~~G~FT~aLl~~L~~~~~~~s~~~l~~~v~~~~ 251 (285)
T 3bij_A 198 VKASILLISGCQDNQLSQDG-AFNGAFTGQLLRVWKNGLYKGSYRSFHKAIVRRM 251 (285)
T ss_dssp CSSEEEEEESSCTTSCCEEC-SSSCHHHHHHHHHHGGGTCCSCHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCcccccc-ccCCHHHHHHHHHHhhCCCCcCHHHHHHHHHHhc
Confidence 445644 8899999866 4678999999999998776789999999887765
No 22
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=71.29 E-value=2.5 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHHHhcCCC
Q psy13939 34 NGTWFIQCLCQELADSGTK 52 (86)
Q Consensus 34 ~GSwFIq~Lc~vl~~~~~~ 52 (86)
+==.||.+||.||..|..+
T Consensus 72 K~yVYINELCTvLkaHs~K 90 (94)
T 2kzs_A 72 KLYVYINELCTVLKAHSAK 90 (94)
T ss_dssp THHHHHHHHHHHHHHTBSS
T ss_pred ceEEehHHHHHHHHHhccc
Confidence 4458999999999998643
No 23
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=70.51 E-value=1.8 Score=29.75 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhh
Q psy13939 36 TWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDM 70 (86)
Q Consensus 36 SwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~ 70 (86)
+-|+|+|+..|...+...++..+|.+|-++++..+
T Consensus 22 ~~Fl~aLa~Ei~~~ag~ee~~~fL~r~G~rlA~r~ 56 (167)
T 3aj1_A 22 TLFLQTLSWEIDDQVGIEVRNELLREVGRGMGTRI 56 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 45999999999999999999999999999988654
No 24
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=67.86 E-value=1.6 Score=35.32 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=19.4
Q ss_pred CCCCCchHHHHHHHHHHHhcCC
Q psy13939 30 RHPENGTWFIQCLCQELADSGT 51 (86)
Q Consensus 30 R~~~~GSwFIq~Lc~vl~~~~~ 51 (86)
=||--|||||.+|.+.|.+.++
T Consensus 395 ~DP~~GSyyvE~LT~~la~~Aw 416 (637)
T 1req_B 395 NDPAGGSYYVESLTRSLADAAW 416 (637)
T ss_dssp SCTTTTCHHHHHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHH
Confidence 4889999999999999998754
No 25
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=65.34 E-value=2 Score=35.40 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred CCCCCchHHHHHHHHHHHhcCC
Q psy13939 30 RHPENGTWFIQCLCQELADSGT 51 (86)
Q Consensus 30 R~~~~GSwFIq~Lc~vl~~~~~ 51 (86)
=||--|||||.+|.+.|.+.++
T Consensus 399 ~DP~~GSyyvE~LT~~l~~~Aw 420 (727)
T 1req_A 399 IDPWSGSAYVEELTWDLARKAW 420 (727)
T ss_dssp SSTTTTCHHHHHHHHHHHHHHH
T ss_pred cCcccCcHHHHHHHHHHHHHHH
Confidence 4889999999999999998754
No 26
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=65.02 E-value=2 Score=35.55 Aligned_cols=22 Identities=23% Similarity=0.675 Sum_probs=19.4
Q ss_pred CCCCCchHHHHHHHHHHHhcCC
Q psy13939 30 RHPENGTWFIQCLCQELADSGT 51 (86)
Q Consensus 30 R~~~~GSwFIq~Lc~vl~~~~~ 51 (86)
=||-.|||||.+|.+.|.+.++
T Consensus 412 ~DP~gGSyyVE~LT~~l~e~Aw 433 (762)
T 2xij_A 412 ADPWGGSYMMECLTNDVYDAAL 433 (762)
T ss_dssp SSTTTTCHHHHHHHHHHHHHHH
T ss_pred cCcccCcHHHHHHHHHHHHHHH
Confidence 4889999999999999998754
No 27
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=44.98 E-value=14 Score=25.35 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred ccccCCCCCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhh
Q psy13939 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDM 70 (86)
Q Consensus 26 ~~s~R~~~~GSwFIq~Lc~vl~~~~~~~dl~~ilt~Vn~~Va~~~ 70 (86)
..-|+....=+-|+++|++.|...+...++..+|.+|-+++|..+
T Consensus 12 ~~~~~~~~~W~~FL~aLa~E~~~~ag~~e~~~fLrrvG~rlA~r~ 56 (167)
T 2z9e_A 12 MTIFEKKPDFTLFLQTLSWEIDDQVGIEVRNELLREVGRGMGTRI 56 (167)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTB
T ss_pred ceeeecCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 334444445567999999999999999999999999998888554
No 28
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=32.34 E-value=35 Score=24.81 Aligned_cols=46 Identities=11% Similarity=0.329 Sum_probs=34.0
Q ss_pred cCCCccccCCCCCc----------hHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHH
Q psy13939 22 VFVSFYSWRHPENG----------TWFIQCLCQELADS----GTKLDLLSIMTRVSRRVA 67 (86)
Q Consensus 22 T~~g~~s~R~~~~G----------SwFIq~Lc~vl~~~----~~~~dl~~ilt~Vn~~Va 67 (86)
+.++...|.|+.+| .|++-.|+++++.- .....+++++.++-+.+.
T Consensus 192 ~~~~~~~w~d~~tg~~~~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~ 251 (373)
T 1nc5_A 192 DEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSIC 251 (373)
T ss_dssp ETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccCCCCCCcccchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHH
Confidence 55555567777777 79999999999863 234568888887766664
No 29
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=32.22 E-value=8.2 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCCccccCCCCCchHHHHHHHHHHHhcC
Q psy13939 23 FVSFYSWRHPENGTWFIQCLCQELADSG 50 (86)
Q Consensus 23 ~~g~~s~R~~~~GSwFIq~Lc~vl~~~~ 50 (86)
+.-|.|||...+.-+|+..|...|...+
T Consensus 9 yDVFiSfrg~D~r~~Fv~~L~~~L~~~g 36 (176)
T 3jrn_A 9 YDVFLSFRGHDTRHNFISFLYKELVRRS 36 (176)
T ss_dssp EEEEEEECHHHHTTTHHHHHHHHHHHTT
T ss_pred CeEEEECcCcccChHHHHHHHHHHHHCC
Confidence 4558889887777789999999998865
No 30
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=28.11 E-value=43 Score=16.87 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.2
Q ss_pred CCchHHHHHHHHHHHhc
Q psy13939 33 ENGTWFIQCLCQELADS 49 (86)
Q Consensus 33 ~~GSwFIq~Lc~vl~~~ 49 (86)
+.-|-|++.||+.++.+
T Consensus 13 EsPs~FlerL~eayR~y 29 (32)
T 1bm4_A 13 ESPSAFLERLKEAYRRY 29 (32)
T ss_dssp GHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhc
Confidence 44689999999999876
No 31
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=21.86 E-value=27 Score=16.66 Aligned_cols=7 Identities=43% Similarity=1.327 Sum_probs=5.7
Q ss_pred hHHHHHH
Q psy13939 36 TWFIQCL 42 (86)
Q Consensus 36 SwFIq~L 42 (86)
.||||-+
T Consensus 13 awyiqyv 19 (26)
T 4gnt_B 13 AWYIQYV 19 (26)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6999965
Done!