RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13939
(86 letters)
>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE)
homologues; Cysteine-dependent aspartate-directed
proteases that mediate programmed cell death
(apoptosis). Caspases are synthesized as inactive
zymogens and activated by proteolysis of the peptide
backbone adjacent to an aspartate. The resulting two
subunits associate to form an (alpha)2(beta)2-tetramer
which is the active enzyme. Activation of caspases can
be mediated by other caspase homologs.
Length = 243
Score = 73.8 bits (182), Expect = 1e-17
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+ SWR+ + G+WFIQ LCQ L LDLL I+T+V+R+VA ES + +KQ
Sbjct: 176 YVSWRNTKKGSWFIQSLCQVLRKYAHSLDLLDILTKVNRKVAEKFES-------VNGKKQ 228
Query: 86 I 86
+
Sbjct: 229 M 229
>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme
(ICE) homologues. Cysteine aspartases that mediate
programmed cell death (apoptosis). Caspases are
synthesised as zymogens and activated by proteolysis of
the peptide backbone adjacent to an aspartate. The
resulting two subunits associate to form an
(alpha)2(beta)2-tetramer which is the active enzyme.
Activation of caspases can be mediated by other caspase
homologues.
Length = 241
Score = 68.4 bits (168), Expect = 1e-15
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 26 FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
+ SWR+P G+WFIQ LCQ L + LDLL I+T V+R+VA ES + +KQ
Sbjct: 172 YVSWRNPTRGSWFIQSLCQVLKEYARSLDLLDILTEVNRKVADKFES-------VNAKKQ 224
Query: 86 I 86
+
Sbjct: 225 M 225
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain.
Length = 228
Score = 63.5 bits (155), Expect = 6e-14
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 17/73 (23%)
Query: 20 DDVFVSF------YSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESY 73
D V++ S+R +G+WFIQ LCQ L + LDLL I+TRV+R+VA
Sbjct: 153 ADFLVAYSTTPGQVSYRGTGSGSWFIQALCQVLREYAPGLDLLDILTRVNRKVADA---- 208
Query: 74 NDLLSWQHQQKQI 86
+KQ+
Sbjct: 209 -------TGKKQM 214
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
protein; Provisional.
Length = 697
Score = 30.6 bits (69), Expect = 0.061
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 41 CLCQELADSGTKLD--LLSIMTRVSRRVAL 68
CL E+ DSG +D SIM R+ R+AL
Sbjct: 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
>gnl|CDD|219988 pfam08721, Tn7_Tnp_TnsA_C, TnsA endonuclease C terminal. The Tn7
transposase is composed of proteins TnsA and TnsB. DNA
breakage at the 5' end of the transposon is carried out
by TnsA, and breakage and joining at the 3' end is
carried out by TnsB. The C terminal domain of TnsA
binds DNA.
Length = 79
Score = 28.0 bits (63), Expect = 0.21
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 11 YYKFDEEDDDDVFVSFYSWRHPENGTWFIQCLCQELA-----DSGTKLDLLSIM 59
Y + + + DV +S ENG I+ L ++L + G L L+ +
Sbjct: 16 YLRIESNQELDVELSDILEVLKENGGTTIRSLLKKLDADYNLEPGEALPLIRHL 69
>gnl|CDD|224708 COG1795, COG1795, Formaldehyde-activating enzyme nesessary for
methanogenesis [Energy production and conversion].
Length = 170
Score = 27.8 bits (62), Expect = 0.60
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 14 FDEEDDDDVFVSFYSWRHPEN 34
E DDV V + HPE
Sbjct: 100 IPREQADDVVVIVSVFVHPEA 120
>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit;
Provisional.
Length = 317
Score = 27.8 bits (62), Expect = 0.64
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 32 PENGTWFIQCLCQELADSGTK 52
P NGT FI CL L D T+
Sbjct: 206 PFNGTNFIDCLKLFLNDPETE 226
>gnl|CDD|236222 PRK08292, PRK08292, AMP nucleosidase; Provisional.
Length = 489
Score = 27.1 bits (61), Expect = 1.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 63 SRRVALDMES 72
SR VALDMES
Sbjct: 402 SRAVALDMES 411
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found
in phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 25.6 bits (57), Expect = 1.6
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 7 LSKMYYKFDEEDDDDVFVSFYSWRH 31
L ++ +K + D+D + V+ S+R
Sbjct: 28 LKRLGFKVEVSDEDTLKVTVPSYRP 52
>gnl|CDD|234529 TIGR04267, mod_HExxH, HEXXH motif domain. Some proteins with
this domain toward the C-terminus have an N-terminal
region with a radical SAM domain (pfam04055) and a
SPASM domain (TIGR04085), a combination frequently
associated with peptide modification. All seed
alignment members, and all family members that are not
fused to a radical SAM domain, have a motif HEXXH that
suggests metalloprotease activity. A role in peptide or
protein maturation is suggested.
Length = 399
Score = 26.2 bits (58), Expect = 2.0
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 30 RHPENGTWFIQCLCQELADSGTKLD 54
HP G W +CL + A S L
Sbjct: 72 LHPSVGAWAARCLRRLRAPSDGPLA 96
>gnl|CDD|237357 PRK13348, PRK13348, chromosome replication initiation inhibitor
protein; Provisional.
Length = 294
Score = 26.1 bits (58), Expect = 2.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 35 GTWFIQCLCQELADSGTKLDLL 56
TWF+ L LA L+L+
Sbjct: 102 ATWFLPALAAVLAGERILLELI 123
>gnl|CDD|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.
Length = 513
Score = 25.5 bits (57), Expect = 3.7
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 7 LSKMYYKFDEEDDDDVFVSFYSWRHPENGTWFIQCLCQELADSG---TKLDLLSIMTRVS 63
L ++ YK +E+ D F F +ELAD DL +++ +
Sbjct: 341 LEELGYKLSDEELDKAFERF-----------------KELADKKKEVFDEDLEALVEDET 383
Query: 64 RR 65
++
Sbjct: 384 QQ 385
>gnl|CDD|225835 COG3298, COG3298, Predicted 3'-5' exonuclease related to the
exonuclease domain of PolB [DNA replication,
recombination, and repair].
Length = 122
Score = 24.8 bits (54), Expect = 5.6
Identities = 5/42 (11%), Positives = 18/42 (42%)
Query: 4 DYELSKMYYKFDEEDDDDVFVSFYSWRHPENGTWFIQCLCQE 45
D +L + + + D ++ + + ++G+ F+ +
Sbjct: 14 DVQLIRTLFDLEGSLDLEIVLFAQQKQKEKSGSEFLPLYLHQ 55
>gnl|CDD|215245 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 24.3 bits (53), Expect = 9.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 72 SYNDLLSWQHQQKQ 85
Y+D+++W QQK
Sbjct: 249 PYDDVVAWHKQQKT 262
>gnl|CDD|222612 pfam14233, DUF4335, Domain of unknown function (DUF4335). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 204 and
480 amino acids in length. There are two completely
conserved residues (G and D) that may be functionally
important.
Length = 186
Score = 24.2 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 39 IQCLCQELADSGTKLDLLSIMTRVSRRVAL 68
++ L Q ADS T DL + SRR L
Sbjct: 123 VEALDQLRADSRTLPDLSLQLQPPSRRYPL 152
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.422
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,452,268
Number of extensions: 342532
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 20
Length of query: 86
Length of database: 10,937,602
Length adjustment: 54
Effective length of query: 32
Effective length of database: 8,542,486
Effective search space: 273359552
Effective search space used: 273359552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)