RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13939
         (86 letters)



>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
           frugiperda) [TaxId: 7108]}
          Length = 256

 Score = 68.2 bits (166), Expect = 3e-16
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query: 26  FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
           ++SWR+   G+WF+Q LC+EL  +GT+ D+L+++T V ++VALD ES     +  HQQKQ
Sbjct: 181 YFSWRNTTRGSWFMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQKQ 240

Query: 86  I 86
           +
Sbjct: 241 V 241


>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 238

 Score = 59.3 bits (143), Expect = 5e-13
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 26  FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
           +YSWR+ ++G+WFIQ LC  L     KL+ + I+TRV+R+VA + ES++   +  H +KQ
Sbjct: 164 YYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSF-DATFHAKKQ 222

Query: 86  I 86
           I
Sbjct: 223 I 223


>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 245

 Score = 57.5 bits (138), Expect = 3e-12
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 26  FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
           +YSWR P  G+WF+Q LC  L + G  L+++ I+TRV+ RVA   ES +D     H++KQ
Sbjct: 172 YYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSD-DPHFHEKKQ 230

Query: 86  I 86
           I
Sbjct: 231 I 231


>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 257

 Score = 54.0 bits (129), Expect = 6e-11
 Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 26  FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVALDMESYNDLLSWQHQQKQ 85
             + R+ + G+W+I+ L Q  ++    + +  ++ +V+  +           +  H+ K+
Sbjct: 180 TAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPG--TEFHRCKE 237

Query: 86  I 86
           +
Sbjct: 238 M 238


>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 277

 Score = 54.1 bits (129), Expect = 7e-11
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 23  FVSFYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
           F  F SWR P++G+W+++ L           DL S++ RV+  V+
Sbjct: 209 FPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVS 253


>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a
           cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 48.7 bits (115), Expect = 5e-09
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 26  FYSWRHPENGTWFIQCLCQELADSGTKLDLLSIMTRVSRRVA 67
             SWRHP  G+ FI  L + + +     D+  I  +V     
Sbjct: 194 NVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 235


>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 242

 Score = 43.7 bits (102), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 3   GDYELSKMYYKFDEEDDDDVFVS----FYSWRHPENGTWFIQCLCQELADSGTK-LDLLS 57
               +        +E D  + ++      S+R+P  GTW+IQ LCQ L +   +  D+L+
Sbjct: 145 KGIPVETDTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILT 204

Query: 58  IMTRVSRRVALDMESYN 74
           I+T V+  V+   +  N
Sbjct: 205 ILTEVNYEVSNKDDKKN 221


>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain
          {Bacteriophage lambda [TaxId: 10710]}
          Length = 49

 Score = 24.0 bits (52), Expect = 1.2
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 26 FYSWRHPENGTWF 38
          +Y +R P  G  F
Sbjct: 13 YYCYRDPRTGKEF 25


>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14)
           subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 24.3 bits (53), Expect = 1.9
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 68  LDMESYNDLLSWQHQQKQI 86
            D+  YN+ +   H   Q 
Sbjct: 92  FDLGLYNEAVKIIHDFPQF 110


>d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase
           {Bacteriophage PHI-6 [TaxId: 10879]}
          Length = 664

 Score = 23.4 bits (50), Expect = 5.4
 Identities = 5/14 (35%), Positives = 8/14 (57%)

Query: 8   SKMYYKFDEEDDDD 21
           +K+ YK+ E D   
Sbjct: 626 NKLQYKWTEADVSA 639


>d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 134

 Score = 22.8 bits (49), Expect = 5.4
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 7  LSKMYYKFDEEDDDDVFVSFYSWRHPENGTWFI 39
          ++    K D  + D  F +  SWR   +  + +
Sbjct: 15 ITAFTMKSDRRNCDLSFSNLCSWRFLYDTQFAV 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,938
Number of extensions: 14279
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 18
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)