BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13940
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M72|A Chain A, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|B Chain B, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
pdb|1M72|C Chain C, Crystal Structure Of Caspase-1 From Spodoptera Frugiperda
Length = 272
Score = 76.3 bits (186), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 28 ELSQEDHSDADCLVITVLTHG-LGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFF 86
+ ++ DHSDADCL++ VLTHG LG L+A D Y + LW FTADKC TLAGKPK+FF
Sbjct: 89 QTAEMDHSDADCLLVAVLTHGELG--MLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFF 146
Query: 87 IQ 88
IQ
Sbjct: 147 IQ 148
>pdb|2NN3|C Chain C, Structure Of Pro-Sf-Caspase-1
pdb|2NN3|D Chain D, Structure Of Pro-Sf-Caspase-1
Length = 310
Score = 73.2 bits (178), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Query: 28 ELSQEDHSDADCLVITVLTHG-LGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFF 86
+ ++ DHSDADCL++ VLT G LG L+A D Y + LW FTADKC TLAGKPK+FF
Sbjct: 117 QTAEMDHSDADCLLVAVLTAGELG--MLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFF 174
Query: 87 IQ 88
IQ
Sbjct: 175 IQ 176
>pdb|3SIP|A Chain A, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|C Chain C, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 157
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 30 SQEDHSDADCLVITVLTHG-LGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
+ ++HSD+DC+++ +L+HG +G Y++A D Y ++ +W FTA+ C +LAGKPK+FFIQ
Sbjct: 79 ASQNHSDSDCILVAILSHGEMG--YIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQ 136
>pdb|3SIR|A Chain A, Crystal Structure Of Drice
pdb|3SIR|B Chain B, Crystal Structure Of Drice
pdb|3SIR|C Chain C, Crystal Structure Of Drice
pdb|3SIR|D Chain D, Crystal Structure Of Drice
Length = 259
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 46/60 (76%), Gaps = 3/60 (5%)
Query: 30 SQEDHSDADCLVITVLTHG-LGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
+ ++HSD+DC+++ +L+HG +G Y++A D Y ++ +W FTA+ C +LAGKPK+FFIQ
Sbjct: 79 ASQNHSDSDCILVAILSHGEMG--YIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQ 136
>pdb|3P45|A Chain A, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|C Chain C, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|E Chain E, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|G Chain G, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|I Chain I, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|K Chain K, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|M Chain M, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
pdb|3P45|O Chain O, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
Length = 179
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 102 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
Length = 299
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 102 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
Length = 293
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 102 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
Length = 294
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 95 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 153
Query: 88 Q 88
Q
Sbjct: 154 Q 154
>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
Mediate Caspase Tetramerization
Length = 279
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 82 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 140
Query: 88 Q 88
Q
Sbjct: 141 Q 141
>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
With Intersubunit Linker Attached
Length = 277
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 80 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 138
Query: 88 Q 88
Q
Sbjct: 139 Q 139
>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho
pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
Ac-Veid-Cho Solved By As-Sad
Length = 278
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 79 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 137
Query: 88 Q 88
Q
Sbjct: 138 Q 138
>pdb|3QNW|A Chain A, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|C Chain C, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|E Chain E, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
pdb|3QNW|G Chain G, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
Length = 156
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 79 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 137
Query: 88 Q 88
Q
Sbjct: 138 Q 138
>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
Outside The Active Site
Length = 279
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 80 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 138
Query: 88 Q 88
Q
Sbjct: 139 Q 139
>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
Length = 282
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 83 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 141
Query: 88 Q 88
Q
Sbjct: 142 Q 142
>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
Substrate-Binding Groove
Length = 277
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 80 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 138
Query: 88 Q 88
Q
Sbjct: 139 Q 139
>pdb|3P4U|A Chain A, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
pdb|3P4U|C Chain C, Crystal Structure Of Active Caspase-6 In Complex With
Ac-Veid-Cho Inhibitor
Length = 157
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
E+S H+DADC V L+HG G +++AYD ++ L F DKC +L GKPKIF I
Sbjct: 80 EVSTVSHADADCFVCVFLSHGEGN-HIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFII 138
Query: 88 Q 88
Q
Sbjct: 139 Q 139
>pdb|1I3O|A Chain A, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|C Chain C, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 175
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 100 MRDVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 158
Query: 86 FIQ 88
IQ
Sbjct: 159 IIQ 161
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 88 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 143
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 144 RGDRCKTLLEKPKLFFIQ 161
>pdb|2XZD|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZT|A Chain A, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|C Chain C, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2Y0B|A Chain A, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|C Chain C, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 149
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 76 DVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 134
Query: 88 Q 88
Q
Sbjct: 135 Q 135
>pdb|1NME|A Chain A, Structure Of Casp-3 With Tethered Salicylate
pdb|2DKO|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2H5I|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Devd-Cho
pdb|2H5J|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H5J|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-Dmqd-Cho
pdb|2H65|A Chain A, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2H65|C Chain C, Crystal Strusture Of Caspase-3 With Inhibitor Ac-vdvad-cho
pdb|2XYG|A Chain A, Caspase-3:cas329306
pdb|2XYH|A Chain A, Caspase-3:cas60254719
pdb|2XYP|A Chain A, Caspase-3:cas26049945
Length = 146
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 74 DVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 132
Query: 88 Q 88
Q
Sbjct: 133 Q 133
>pdb|4DCJ|A Chain A, Crystal Structure Of Caspase 3, L168d Mutant
pdb|4DCJ|D Chain D, Crystal Structure Of Caspase 3, L168d Mutant
Length = 147
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|4DCP|A Chain A, Crystal Structure Of Caspase 3, L168f Mutant
pdb|4DCP|D Chain D, Crystal Structure Of Caspase 3, L168f Mutant
Length = 147
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|1PAU|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Aldehyde Inhibitor Ac-Devd-Cho
pdb|1GFW|A Chain A, The 2.8 Angstrom Crystal Structure Of Caspase-3 (Apopain
Or Cpp32)in Complex With An Isatin Sulfonamide
Inhibitor.
pdb|1RE1|A Chain A, Crystal Structure Of Caspase-3 With A Nicotinic Acid
Aldehyde Inhibitor
pdb|1RHJ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHJ|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Pryazinone Inhibitor
pdb|1RHK|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Phenyl-Propyl- Ketone Inhibitor
pdb|1RHM|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHM|C Chain C, Crystal Structure Of The Complex Of Caspase-3 With A
Nicotinic Acid Aldehyde Inhibitor
pdb|1RHQ|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHQ|D Chain D, Crystal Structure Of The Complex Of Caspase-3 With A
Bromomethoxyphenyl Inhibitor
pdb|1RHR|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A
Cinnamic Acid Methyl Ester Inhibitor
pdb|1RHU|A Chain A, Crystal Structure Of The Complex Of Caspase-3 With A 5,6,7
Tricyclic Peptidomimetic Inhibitor
pdb|2CJX|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-ray Structure Analysis
pdb|2CJY|A Chain A, Extended Substrate Recognition In Caspase-3 Revealed By
High Resolution X-Ray Structure Analysis
pdb|2C1E|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2K|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2M|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2C2O|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Michael Acceptor Inhibitors.
pdb|2CDR|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNK|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNL|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|2CNN|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-Peptide Epoxide Inhibitors.
pdb|3EDQ|A Chain A, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3EDQ|C Chain C, Crystal Structure Of Caspase-3 With Inhibitor Ac-Ldesd-Cho
pdb|3GJQ|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJQ|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJR|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJS|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|A Chain A, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3GJT|C Chain C, Caspase-3 Binds Diverse P4 Residues In Peptides
pdb|3KJF|A Chain A, Caspase 3 Bound To A Covalent Inhibitor
pdb|2CNO|A Chain A, Crystal Structures Of Caspase-3 In Complex With
Aza-peptide Epoxide Inhibitors
Length = 147
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 74 DVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 132
Query: 88 Q 88
Q
Sbjct: 133 Q 133
>pdb|4DCO|A Chain A, Crystal Structure Of Caspase 3, L168y Mutant
pdb|4DCO|D Chain D, Crystal Structure Of Caspase 3, L168y Mutant
Length = 147
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHGE-EGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|2AR9|A Chain A, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|B Chain B, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|C Chain C, Crystal Structure Of A Dimeric Caspase-9
pdb|2AR9|D Chain D, Crystal Structure Of A Dimeric Caspase-9
Length = 278
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 25 GLGELSQEDHSDADCLVITVLTHGLGERYL------WAYD-MPYFVEKLWLPFTADKCRT 77
L EL+++DH DC V+ +L+HG +L + D P VEK+ F C +
Sbjct: 77 ALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPS 136
Query: 78 LAGKPKIFFIQ 88
L GKPK+FFIQ
Sbjct: 137 LGGKPKLFFIQ 147
>pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|B Chain B, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|C Chain C, Structure Of Cleaved, Card Domain Deleted Caspase-9
pdb|1JXQ|D Chain D, Structure Of Cleaved, Card Domain Deleted Caspase-9
Length = 284
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 25 GLGELSQEDHSDADCLVITVLTHGLGERYL------WAYD-MPYFVEKLWLPFTADKCRT 77
L EL+++DH DC V+ +L+HG +L + D P VEK+ F C +
Sbjct: 77 ALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPS 136
Query: 78 LAGKPKIFFIQ 88
L GKPK+FFIQ
Sbjct: 137 LGGKPKLFFIQ 147
>pdb|1NW9|B Chain B, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 277
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 25 GLGELSQEDHSDADCLVITVLTHGLGERYL------WAYD-MPYFVEKLWLPFTADKCRT 77
L EL+++DH DC V+ +L+HG +L + D P VEK+ F C +
Sbjct: 76 ALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPS 135
Query: 78 LAGKPKIFFIQ 88
L GKPK+FFIQ
Sbjct: 136 LGGKPKLFFIQ 146
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 88 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 143
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 144 RGDRCKTLLEKPKLFFIQ 161
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 55 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 110
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 111 RGDRCKTLLEKPKLFFIQ 128
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 111 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 166
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 167 RGDRCKTLLEKPKLFFIQ 184
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 55 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 110
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 111 RGDRCKTLLEKPKLFFIQ 128
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 111 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 166
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 167 RGDRCKTLLEKPKLFFIQ 184
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 113 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 168
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 169 RGDRCKTLLEKPKLFFIQ 186
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 65 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 120
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+C+TL KPK+FFIQ
Sbjct: 121 RGDRCKTLLEKPKLFFIQ 138
>pdb|3PD0|A Chain A, Caspase-3 E246a
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|1NMQ|A Chain A, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMQ|B Chain B, Extendend Tethering: In Situ Assembly Of Inhibitors
pdb|1NMS|A Chain A, Caspase-3 Tethered To Irreversible Inhibitor
pdb|1NMS|B Chain B, Caspase-3 Tethered To Irreversible Inhibitor
Length = 249
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|2J30|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|2J33|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of (Pro)caspase-3
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|3DEH|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEH|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEI|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEJ|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|A Chain A, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|B Chain B, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|C Chain C, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
pdb|3DEK|D Chain D, Crystal Structures Of Caspase-3 With Bound
Isoquinoline-1,3, 4-Trione Derivative Inhibitors
Length = 249
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|2J32|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(Pro)caspase-3
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|2J31|A Chain A, The Role Of Loop Bundle Hydrogen Bonds In The Maturation
And Activity Of(pro)caspase-3
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|1QX3|A Chain A, Conformational Restrictions In The Active Site Of
Unliganded Human Caspase-3
Length = 257
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|3PD1|A Chain A, Caspase-3 K242a
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|3PCX|A Chain A, Caspase-3 E246a, K242a Double Mutant
Length = 250
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|3H0E|A Chain A, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
pdb|3H0E|B Chain B, 3,4-Dihydropyrimido(1,2-A)indol-10(2h)-Ones As Potent Non-
Peptidic Inhibitors Of Caspase-3
Length = 255
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|3ITN|A Chain A, Crystal Structure Of Pseudo-Activated Procaspase-3
Length = 250
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 26 LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
+ ++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F
Sbjct: 72 MRDVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLF 130
Query: 86 FIQ 88
IQ
Sbjct: 131 IIQ 133
>pdb|4EHD|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|1CP3|A Chain A, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
pdb|1CP3|B Chain B, Crystal Structure Of The Complex Of Apopain With The
Tetrapeptide Inhibitor Ace-Dvad-Fmc
Length = 277
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG E ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 61 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 116
Query: 71 TADKCRTLAGKPKIFFIQ 88
+C+TL KPK+FFIQ
Sbjct: 117 RGARCKTLLEKPKLFFIQ 134
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 61 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 116
Query: 71 TADKCRTLAGKPKIFFIQ 88
+C+TL KPK+FFIQ
Sbjct: 117 RGARCKTLLEKPKLFFIQ 134
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 62 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 117
Query: 71 TADKCRTLAGKPKIFFIQ 88
+C+TL KPK+FFIQ
Sbjct: 118 RGARCKTLLEKPKLFFIQ 135
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 61 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 116
Query: 71 TADKCRTLAGKPKIFFIQ 88
+C+TL KPK+FFIQ
Sbjct: 117 RGARCKTLLEKPKLFFIQ 134
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 62 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 117
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+ +TL KPK+FFIQ
Sbjct: 118 RGDRSKTLLEKPKLFFIQ 135
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 11 HSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70
++D C + L L + S+EDH++A C +L+HG E ++ D ++ L F
Sbjct: 113 YNDCSCAKMQDL---LKKASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHF 168
Query: 71 TADKCRTLAGKPKIFFIQ 88
D+ +TL KPK+FFIQ
Sbjct: 169 RGDRSKTLLEKPKLFFIQ 186
>pdb|4EHH|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHGEAG-IIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4EHK|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHK|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHGEAG-IIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHGEAG-IIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 28 ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
++S+EDHS V +L+HG ++ + P ++K+ F D+CR+L GKPK+F I
Sbjct: 102 DVSKEDHSKRSSFVCVLLSHGEAG-IIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 160
Query: 88 Q 88
Q
Sbjct: 161 Q 161
>pdb|2C2Z|A Chain A, Crystal Structure Of Caspase-8 In Complex With Aza-Peptide
Michael Acceptor Inhibitor
pdb|2Y1L|A Chain A, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|C Chain C, Caspase-8 In Complex With Darpin-8.4
Length = 159
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + +L FT KC +LAGKPK+FFIQ
Sbjct: 88 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQ 143
>pdb|1QTN|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tetrapeptide Inhibitor Ace-Ietd-Aldehyde
pdb|3KJN|A Chain A, Caspase 8 Bound To A Covalent Inhibitor
pdb|3KJQ|A Chain A, Caspase 8 With Covalent Inhibitor
Length = 164
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + +L FT KC +LAGKPK+FFIQ
Sbjct: 93 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQ 148
>pdb|3H11|B Chain B, Zymogen Caspase-8:c-Flipl Protease Domain Complex
Length = 271
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYD---MPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + ++ D P + +L FT KC +LAGKPK+FFIQ
Sbjct: 87 DHSNMDCFICCILSHG-DKGIIYGTDGQEAPIY--ELTSQFTGLKCPSLAGKPKVFFIQ 142
>pdb|2K7Z|A Chain A, Solution Structure Of The Catalytic Domain Of Procaspase-8
Length = 266
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYD---MPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + ++ D P + +L FT KC +LAGKPK+FFIQ
Sbjct: 90 DHSNMDCFICCILSHG-DKGIIYGTDGQEAPIY--ELTSQFTGLKCPSLAGKPKVFFIQ 145
>pdb|1QDU|A Chain A, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|C Chain C, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|E Chain E, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|G Chain G, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|I Chain I, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1QDU|K Chain K, Crystal Structure Of The Complex Of Caspase-8 With The
Tripeptide Ketone Inhibitor Zevd-Dcbmk
pdb|1F9E|A Chain A, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|C Chain C, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|E Chain E, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|G Chain G, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|I Chain I, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
pdb|1F9E|K Chain K, Caspase-8 Specificity Probed At Subsite S4: Crystal
Structure Of The Caspase-8-Z-Devd-Cho
Length = 153
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + +L FT KC +LAGKPK+FFIQ
Sbjct: 82 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQ 137
>pdb|1I4E|B Chain B, Crystal Structure Of The Caspase-8P35 COMPLEX
pdb|2FUN|B Chain B, Alternative P35-Caspase-8 Complex
pdb|2FUN|D Chain D, Alternative P35-Caspase-8 Complex
Length = 258
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 33 DHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
DHS+ DC + +L+HG + +L FT KC +LAGKPK+FFIQ
Sbjct: 82 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQ 137
>pdb|3H11|A Chain A, Zymogen Caspase-8:c-Flipl Protease Domain Complex
pdb|3H13|A Chain A, C-Flipl Protease-Like Domain
Length = 272
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 24 HGLGELSQE-----DHSDADCLVITVLTHGLGERYLWAYDMPYF---VEKLWLPFTADKC 75
HG+ ++ + +H D D V +++ G G + ++ D + + + F D C
Sbjct: 79 HGISQILGQFACMPEHRDYDSFVCVLVSRG-GSQSVYGVDQTHSGLPLHHIRRMFMGDSC 137
Query: 76 RTLAGKPKIFFIQ 88
LAGKPK+FFIQ
Sbjct: 138 PYLAGKPKMFFIQ 150
>pdb|3R5J|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R5J|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Advad-Cho
pdb|3R6G|A Chain A, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6G|C Chain C, Crystal Structure Of Active Caspase-2 Bound With
Ac-Vdvad-Cho
pdb|3R6L|A Chain A, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R6L|C Chain C, Caspase-2 T380a Bound With Ac-Vdvad-Cho
pdb|3R7B|A Chain A, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7B|C Chain C, Caspase-2 Bound To One Copy Of Ac-Dvad-Cho
pdb|3R7N|A Chain A, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7N|C Chain C, Caspase-2 Bound With Two Copies Of Ac-Dvad-Cho
pdb|3R7S|A Chain A, Crystal Structure Of Apo Caspase2
pdb|3R7S|C Chain C, Crystal Structure Of Apo Caspase2
Length = 160
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 HSDADCLVITVLTHGLGERYLWAYDMPYF-VEKLWLPFTADKCRTLAGKPKIFFIQ 88
H D ++ +L+HG+ E ++ D +++++ F C +L KPK+FFIQ
Sbjct: 91 HRVTDSCIVALLSHGV-EGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQ 145
>pdb|1PYO|A Chain A, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
pdb|1PYO|C Chain C, Crystal Structure Of Human Caspase-2 In Complex With
Acetyl-Leu-Asp- Glu-Ser-Asp-Cho
Length = 167
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 HSDADCLVITVLTHGLGERYLWAYDMPYF-VEKLWLPFTADKCRTLAGKPKIFFIQ 88
H D ++ +L+HG+ E ++ D +++++ F C +L KPK+FFIQ
Sbjct: 98 HRVTDSCIVALLSHGV-EGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQ 152
>pdb|3RJM|A Chain A, Caspase2 In Complex With Chdi Ligand 33c
pdb|3RJM|C Chain C, Caspase2 In Complex With Chdi Ligand 33c
Length = 169
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 HSDADCLVITVLTHGLGERYLWAYDMPYF-VEKLWLPFTADKCRTLAGKPKIFFIQ 88
H D ++ +L+HG+ E ++ D +++++ F C +L KPK+FFIQ
Sbjct: 100 HRVTDSCIVALLSHGV-EGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQ 154
>pdb|2P2C|A Chain A, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|C Chain C, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|E Chain E, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|G Chain G, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|I Chain I, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|K Chain K, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 HSDADCLVITVLTHGLGERYLWAYDMPYF-VEKLWLPFTADKCRTLAGKPKIFFIQ 88
H D ++ +L+HG+ E ++ D +++++ F C +L KPK+FFIQ
Sbjct: 100 HRVTDSCIVALLSHGV-EGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQ 154
>pdb|2F9I|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|D Chain D, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 285
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 18 VITVLTHGLGELSQEDHSDADCLVITVLTH 47
+I+++ G +S + HSDA L I+ LTH
Sbjct: 174 IISLMQMGKTSVSLKRHSDAGLLYISYLTH 203
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 9 EDHSDADCLVITVLTHGLGELSQEDHSDADCL 40
+DHS + LV + H LG +H DCL
Sbjct: 127 KDHSPINLLVAVTMAHELGHNLGMEHDGKDCL 158
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 9 EDHSDADCLVITVLTHGLGELSQEDHSDADCL---VITVLTHGL--GERYLWAYD-MPYF 62
+DHS + LV + H LG +H DCL + ++ GL G Y ++ D M Y+
Sbjct: 127 KDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDDSMGYY 186
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 9 EDHSDADCLVITVLTHGLGELSQEDHSDADCL---VITVLTHGL--GERYLWAYD-MPYF 62
+DHS + LV + H LG +H DCL + ++ GL G Y ++ D M Y+
Sbjct: 126 KDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDDSMGYY 185
>pdb|1DTH|A Chain A, Metalloprotease
pdb|1DTH|B Chain B, Metalloprotease
Length = 203
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 9 EDHSDADCLVITVLTHGLGELSQEDHSDADCL---VITVLTHGL--GERYLWAYDMPYFV 63
+DHS + L+ + H LG +H DCL + ++ GL G Y ++ D ++
Sbjct: 128 QDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDDSMHYY 187
Query: 64 EKLWLPFTADKCRTLAGKP 82
E+ + K + + KP
Sbjct: 188 ERFLKQY---KPQCILNKP 203
>pdb|1HTD|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1HTD|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1ATL|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
pdb|1ATL|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
Length = 202
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 9 EDHSDADCLVITVLTHGLGELSQEDHSDADCL---VITVLTHGL--GERYLWAYDMPYFV 63
+DHS + L+ + H LG +H DCL + ++ GL G Y ++ D ++
Sbjct: 127 QDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDDSMHYY 186
Query: 64 EKLWLPFTADKCRTLAGKP 82
E+ + K + + KP
Sbjct: 187 ERFLKQY---KPQCILNKP 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,660,111
Number of Sequences: 62578
Number of extensions: 89879
Number of successful extensions: 397
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 149
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)