Query psy13940
Match_columns 88
No_of_seqs 114 out of 731
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 15:30:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00115 CASc Caspase, inter 99.9 3.3E-25 7.2E-30 158.2 8.7 81 1-88 42-124 (241)
2 cd00032 CASc Caspase, interleu 99.9 4.2E-24 9E-29 152.3 8.5 81 1-88 44-125 (243)
3 KOG3573|consensus 99.4 4.5E-14 9.7E-19 103.5 3.1 72 16-88 116-187 (300)
4 PF00656 Peptidase_C14: Caspas 98.8 1.4E-08 3.1E-13 70.5 7.2 81 1-88 34-125 (248)
5 PF01650 Peptidase_C13: Peptid 72.1 6.6 0.00014 28.5 3.8 55 16-71 79-140 (256)
6 PF14252 DUF4347: Domain of un 67.7 10 0.00022 25.9 3.8 41 20-68 36-76 (165)
7 COG1395 Predicted transcriptio 57.5 83 0.0018 23.9 7.3 57 14-73 50-110 (313)
8 PF14538 Raptor_N: Raptor N-te 55.8 61 0.0013 21.8 7.2 60 17-87 72-141 (154)
9 KOG1546|consensus 43.0 43 0.00092 25.9 3.8 33 17-50 119-151 (362)
10 TIGR01639 P_fal_TIGR01639 Plas 37.9 15 0.00032 21.0 0.6 22 8-31 3-24 (61)
11 KOG2862|consensus 37.6 69 0.0015 24.9 4.2 41 1-51 114-154 (385)
12 PHA02416 hypothetical protein 37.3 25 0.00053 23.4 1.6 10 41-50 50-59 (167)
13 KOG3561|consensus 32.3 42 0.00092 28.6 2.6 33 17-59 91-123 (803)
14 PF06180 CbiK: Cobalt chelatas 32.2 53 0.0012 24.0 2.9 54 19-73 121-195 (262)
15 PF13478 XdhC_C: XdhC Rossmann 28.3 1.1E+02 0.0024 19.9 3.7 12 1-12 20-31 (136)
16 PF11216 DUF3012: Protein of u 28.1 12 0.00026 19.1 -0.8 9 75-83 7-15 (32)
17 cd07062 Peptidase_S66_mccF_lik 27.7 1E+02 0.0023 22.6 3.8 9 78-86 91-99 (308)
18 PLN02282 phosphoglycerate kina 27.5 1E+02 0.0022 24.2 3.8 45 17-70 40-84 (401)
19 PF07521 RMMBL: RNA-metabolisi 27.3 1E+02 0.0022 16.0 3.6 22 19-49 20-41 (43)
20 PF04577 DUF563: Protein of un 26.4 1.3E+02 0.0027 19.9 3.8 19 42-60 155-174 (206)
21 PLN03034 phosphoglycerate kina 25.1 1.1E+02 0.0024 24.6 3.7 47 15-70 113-159 (481)
22 COG3933 Transcriptional antite 24.4 85 0.0018 25.2 2.9 33 38-70 107-155 (470)
23 PF00464 SHMT: Serine hydroxym 23.5 42 0.00092 26.1 1.1 27 54-87 146-175 (399)
24 PTZ00005 phosphoglycerate kina 23.0 1.3E+02 0.0029 23.6 3.7 49 15-70 37-85 (417)
25 cd07363 45_DOPA_Dioxygenase Th 22.8 81 0.0018 22.5 2.4 13 42-55 2-14 (253)
26 COG5206 GPI8 Glycosylphosphati 22.3 1.7E+02 0.0036 22.3 4.0 53 17-70 110-171 (382)
27 PF05274 Baculo_E25: Occlusion 21.9 81 0.0017 22.1 2.1 27 44-70 28-55 (182)
28 PF07002 Copine: Copine; Inte 21.5 1.7E+02 0.0036 19.4 3.5 28 22-49 91-119 (146)
29 cd07025 Peptidase_S66 LD-Carbo 20.7 2.7E+02 0.0059 20.1 4.8 9 78-86 87-95 (282)
30 PRK00073 pgk phosphoglycerate 20.6 1.8E+02 0.0039 22.7 4.0 46 16-70 32-77 (389)
31 COG1424 BioW Pimeloyl-CoA synt 20.5 1E+02 0.0023 22.3 2.5 27 51-85 208-234 (239)
32 KOG3349|consensus 20.2 1.2E+02 0.0026 21.0 2.7 31 2-53 62-92 (170)
33 KOG3734|consensus 20.1 85 0.0018 23.4 2.0 32 41-72 14-54 (272)
34 PRK07276 DNA polymerase III su 20.1 30 0.00066 25.7 -0.3 49 39-87 60-110 (290)
No 1
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=99.92 E-value=3.3e-25 Score=158.17 Aligned_cols=81 Identities=31% Similarity=0.625 Sum_probs=76.7
Q ss_pred CCceEEEEecCCCcccchHHHHHHHHHHhhhc-cCCCCCeEEEEEecCCCCCccEEeeCCc-cchHhhhhccCcCccccC
Q psy13940 1 MKFKLVSQEDHSDADCLVITVLTHGLGELSQE-DHSDADCLVITVLTHGLGERYLWAYDMP-YFVEKLWLPFTADKCRTL 78 (88)
Q Consensus 1 ~~f~v~~~~~~t~~~~Lt~~ei~~~l~~~~~~-~~~~~dc~v~~ilSHG~~~~~i~~~D~~-v~~~~I~~~f~~~~c~~L 78 (88)
+||+|.+++|.| .+||.+.+++++++ +|..+||++|+|||||. ++.|+++|+. |++++|++.|++.+||+|
T Consensus 42 lgF~V~~~~dlt------~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-~~~l~~~D~~~v~l~~i~~~f~~~~c~~L 114 (241)
T smart00115 42 LGYEVHVKNNLT------AEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-EGGIYGTDHSPLPLDEIFSLFNGDNCPSL 114 (241)
T ss_pred CCCEEEEecCCC------HHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-CCeEEEecCCEEEHHHHHHhccccCChhh
Confidence 589999999966 48899999999985 89999999999999999 9999999996 999999999999999999
Q ss_pred CCCCeEEEeC
Q psy13940 79 AGKPKIFFIQ 88 (88)
Q Consensus 79 ~gKPKlffiQ 88 (88)
+|||||||||
T Consensus 115 ~~kPKlffiq 124 (241)
T smart00115 115 AGKPKLFFIQ 124 (241)
T ss_pred cCCCcEEEEe
Confidence 9999999998
No 2
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=99.91 E-value=4.2e-24 Score=152.33 Aligned_cols=81 Identities=32% Similarity=0.587 Sum_probs=76.3
Q ss_pred CCceEEEEecCCCcccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCc-cchHhhhhccCcCccccCC
Q psy13940 1 MKFKLVSQEDHSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMP-YFVEKLWLPFTADKCRTLA 79 (88)
Q Consensus 1 ~~f~v~~~~~~t~~~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~-v~~~~I~~~f~~~~c~~L~ 79 (88)
+||+|.+++|.| .+||.+.++++++.++..+||++|+|||||. ++.|+++|+. +++++|++.|++.+||+|.
T Consensus 44 lgF~V~~~~nlt------~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~-~~~l~~~D~~~v~l~~i~~~f~~~~~~sl~ 116 (243)
T cd00032 44 LGYEVEVKNNLT------AEEILEELKEFASPDHSDSDSFVCVILSHGE-EGGIYGTDGDVVPIDEITSLFNGDNCPSLA 116 (243)
T ss_pred CCCEEEEeCCCC------HHHHHHHHHHHHhccCCCCCeeEEEECCCCC-CCEEEEecCcEEEHHHHHHhhccCCCcccc
Confidence 589999999866 5889999999998779999999999999999 8999999976 9999999999999999999
Q ss_pred CCCeEEEeC
Q psy13940 80 GKPKIFFIQ 88 (88)
Q Consensus 80 gKPKlffiQ 88 (88)
|||||||||
T Consensus 117 ~kPKl~~iq 125 (243)
T cd00032 117 GKPKLFFIQ 125 (243)
T ss_pred CCCcEEEEE
Confidence 999999998
No 3
>KOG3573|consensus
Probab=99.45 E-value=4.5e-14 Score=103.54 Aligned_cols=72 Identities=35% Similarity=0.560 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhhccCcCccccCCCCCeEEEeC
Q psy13940 16 CLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88 (88)
Q Consensus 16 ~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~~f~~~~c~~L~gKPKlffiQ 88 (88)
+.+..+|...+++++..++.+.+|+.+..+|||+ ...+++.+..+.+++|...|++.+||+|.||||+||||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~f~~~~c~~L~~kPK~~~iq 187 (300)
T KOG3573|consen 116 DDIPGEMQSLLKEVSYLDDSDNNCTACSMLSHGE-EKHIYAKDDVLPLEDIFHGFNGANCPSLKGKPKVFFIQ 187 (300)
T ss_pred ccccHHHHHHHHHhhhhcccccchhhhhhhcccc-cceeccCCCeeeHHHHHHHhhhccChhhhcCCcEEEeh
Confidence 3445789999999999999999999999999999 99999999999999999999999999999999999998
No 4
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=98.84 E-value=1.4e-08 Score=70.53 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCceEEE--EecCCCcccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCC-----CccEEeeCCc-cchHh---hhhc
Q psy13940 1 MKFKLVS--QEDHSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLG-----ERYLWAYDMP-YFVEK---LWLP 69 (88)
Q Consensus 1 ~~f~v~~--~~~~t~~~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~-----~~~i~~~D~~-v~~~~---I~~~ 69 (88)
.||.+.. +.+ .|.++|.+.++++.+... ..|++++++++||.. .+...+.|+. +.++. +...
T Consensus 34 ~gf~~~~~l~~~------~t~~~i~~~l~~l~~~~~-~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~~~~~~~ 106 (248)
T PF00656_consen 34 LGFDVENILIDN------ATRANILKALRELLQRAQ-PGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLLPLDANLILDDE 106 (248)
T ss_dssp TTEEEEEEEEES------SSHHHHHHHHHHHHTSGG-TCSEEEEEEESEEETETTCCSTEEEETSSEEEEHHHHEEHHHH
T ss_pred cCCceeeccccc------hHHHHHHHHHhhhhccCC-CCCeeEEEEeccccccCCccCcccccccceeeecchhhhHHHH
Confidence 3677777 555 556899999999998633 889999999999984 2567888998 88887 8888
Q ss_pred cCcCccccCCCCCeEEEeC
Q psy13940 70 FTADKCRTLAGKPKIFFIQ 88 (88)
Q Consensus 70 f~~~~c~~L~gKPKlffiQ 88 (88)
|..-.|+.+..|||+||++
T Consensus 107 l~~~~~~~~~~~~k~~ilD 125 (248)
T PF00656_consen 107 LRDLLCKSLPKKPKLFILD 125 (248)
T ss_dssp TSTTTTGGGTTS-EEEEEE
T ss_pred HhhhhhhhccCCccEEeec
Confidence 9888889999999988874
No 5
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=72.14 E-value=6.6 Score=28.52 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHhhh----c--cCCCCCeEEEEEecCCCCCccEEeeCCc-cchHhhhhccC
Q psy13940 16 CLVITVLTHGLGELSQ----E--DHSDADCLVITVLTHGLGERYLWAYDMP-YFVEKLWLPFT 71 (88)
Q Consensus 16 ~Lt~~ei~~~l~~~~~----~--~~~~~dc~v~~ilSHG~~~~~i~~~D~~-v~~~~I~~~f~ 71 (88)
.++.+.+...|+.=.. + .....|-+++.+.+||+ ++.+...|+. +.-.+|.+.+.
T Consensus 79 ~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~-~~~l~~~~~~~l~~~~L~~~L~ 140 (256)
T PF01650_consen 79 DVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGG-PGFLKFPDGEELTADDLADALD 140 (256)
T ss_pred ccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCC-CCcccCCCcccccHHHHHHHHH
Confidence 4566666666652221 1 24567899999999999 8877776555 77777766653
No 6
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=67.66 E-value=10 Score=25.87 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhh
Q psy13940 20 TVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWL 68 (88)
Q Consensus 20 ~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~ 68 (88)
++|.+.++.. ...++ +-|+|||. +|.++--+..++.+.+..
T Consensus 36 ~qI~~~L~~~-----~~i~~--lhivsHG~-~G~l~LG~~~l~~~~L~~ 76 (165)
T PF14252_consen 36 EQIAQALAGY-----QNIDA--LHIVSHGS-PGALQLGNTWLSAETLEQ 76 (165)
T ss_pred HHHHHHHhcC-----CCCce--EEEEcCCC-cceEEECCceeCHHHHHH
Confidence 5566666444 23333 67899999 999998777666665544
No 7
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=57.46 E-value=83 Score=23.94 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCC--CccEEeeCCc--cchHhhhhccCcC
Q psy13940 14 ADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLG--ERYLWAYDMP--YFVEKLWLPFTAD 73 (88)
Q Consensus 14 ~~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~--~~~i~~~D~~--v~~~~I~~~f~~~ 73 (88)
.|-|+.++. +.|+.++. +-....++|..=+|++. .|.+|--+|- +++..+.++|+|.
T Consensus 50 iD~l~~e~a-~eLkkla~--~l~aspivVg~r~~~~~LE~GVVY~R~gV~~vs~~Tf~~~~~Ge 110 (313)
T COG1395 50 IDGLSRETA-EELKKLAK--SLLASPIVVGLRTKNEPLEDGVVYERYGVPAVSPETFYDYVEGE 110 (313)
T ss_pred ccccCHHHH-HHHHHHHH--HhCCCceEEEEecCCCccccceEEEecCceeeCHHHHHHHhCCC
Confidence 344554333 34555555 34567888888888875 7999999986 8999999999853
No 8
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=55.77 E-value=61 Score=21.82 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhhhccCCCCCeEEEEEecCCCC----CccEEeeCC------ccchHhhhhccCcCccccCCCCCeEEE
Q psy13940 17 LVITVLTHGLGELSQEDHSDADCLVITVLTHGLG----ERYLWAYDM------PYFVEKLWLPFTADKCRTLAGKPKIFF 86 (88)
Q Consensus 17 Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~----~~~i~~~D~------~v~~~~I~~~f~~~~c~~L~gKPKlff 86 (88)
-|.++++..+.++++... .+=+++=--.||-. .|.|+..|. ++++.||.+.. |.|-+|+
T Consensus 72 pt~e~~~~~~~~~R~~a~--~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~l---------g~Psi~V 140 (154)
T PF14538_consen 72 PTVEDLKRLCQSLRRNAK--DERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWL---------GSPSIYV 140 (154)
T ss_pred CCHHHHHHHHHHHHhhCC--CceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhc---------CCCEEEE
Confidence 345889998888887522 26667777899985 478888864 27888888765 5566666
Q ss_pred e
Q psy13940 87 I 87 (88)
Q Consensus 87 i 87 (88)
+
T Consensus 141 ~ 141 (154)
T PF14538_consen 141 F 141 (154)
T ss_pred E
Confidence 4
No 9
>KOG1546|consensus
Probab=43.02 E-value=43 Score=25.88 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHhhhccCCCCCeEEEEEecCCCC
Q psy13940 17 LVITVLTHGLGELSQEDHSDADCLVITVLTHGLG 50 (88)
Q Consensus 17 Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~ 50 (88)
=|...|..+|+.+.+.. ..-|++|+=.+-||.+
T Consensus 119 PT~~Nir~Al~wLV~~a-q~gD~LvfHYSGHGtr 151 (362)
T KOG1546|consen 119 PTGKNIRRALRWLVESA-QPGDSLVFHYSGHGTR 151 (362)
T ss_pred CcHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCc
Confidence 36788999999998863 3449999999999996
No 10
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=37.94 E-value=15 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=17.1
Q ss_pred EecCCCcccchHHHHHHHHHHhhh
Q psy13940 8 QEDHSDADCLVITVLTHGLGELSQ 31 (88)
Q Consensus 8 ~~~~t~~~~Lt~~ei~~~l~~~~~ 31 (88)
|.|+|. .||.+|+.+.|..+.+
T Consensus 3 ~~Dls~--~lTeEEl~~~i~~L~~ 24 (61)
T TIGR01639 3 YNDLSK--KLSKEELNELINSLDE 24 (61)
T ss_pred hhHHhH--HccHHHHHHHHHhhcC
Confidence 455554 6999999999988865
No 11
>KOG2862|consensus
Probab=37.59 E-value=69 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=26.5
Q ss_pred CCceEEEEecCCCcccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCC
Q psy13940 1 MKFKLVSQEDHSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGE 51 (88)
Q Consensus 1 ~~f~v~~~~~~t~~~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~ 51 (88)
||++|.+-+ ...-+-.+.|+|.+.+.+-+. ..+.++||++.
T Consensus 114 ~ga~V~~v~-~~~G~~~~le~i~~~lsqh~p---------~~vfv~hgdsS 154 (385)
T KOG2862|consen 114 YGAEVDVVE-ADIGQAVPLEEITEKLSQHKP---------KAVFVTHGDSS 154 (385)
T ss_pred hCceeeEEe-cCcccCccHHHHHHHHHhcCC---------ceEEEEecCcc
Confidence 577777663 344555677888888765332 26677899843
No 12
>PHA02416 hypothetical protein
Probab=37.28 E-value=25 Score=23.42 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=8.5
Q ss_pred EEEEecCCCC
Q psy13940 41 VITVLTHGLG 50 (88)
Q Consensus 41 v~~ilSHG~~ 50 (88)
.+.|||||++
T Consensus 50 ylaimshgnn 59 (167)
T PHA02416 50 YLAIMSHGNN 59 (167)
T ss_pred eEEEEecCCC
Confidence 5789999993
No 13
>KOG3561|consensus
Probab=32.27 E-value=42 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCC
Q psy13940 17 LVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDM 59 (88)
Q Consensus 17 Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~ 59 (88)
|+.+|+..+| .+.-|+|++|+..+|. .||.+|.
T Consensus 91 lS~~eL~~Lm-------LeAlDGF~fvV~cdG~---IvyVSeS 123 (803)
T KOG3561|consen 91 LSNDELTHLI-------LEALDGFLFVVNCDGR---IVYVSES 123 (803)
T ss_pred cchHHHHHHH-------HHHhcCeEEEEecCce---EEEEecc
Confidence 4445666666 3455899999999987 8888886
No 14
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.17 E-value=53 Score=24.03 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhccC-CCCCeEEEEEecCCCC-------------------CccEEee-CCccchHhhhhccCcC
Q psy13940 19 ITVLTHGLGELSQEDH-SDADCLVITVLTHGLG-------------------ERYLWAY-DMPYFVEKLWLPFTAD 73 (88)
Q Consensus 19 ~~ei~~~l~~~~~~~~-~~~dc~v~~ilSHG~~-------------------~~~i~~~-D~~v~~~~I~~~f~~~ 73 (88)
.+++...++.+.+.-. .. .--.+++|.||.. ++...|| +|..+++++.+.+...
T Consensus 121 ~~D~~~va~aL~~~~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~ 195 (262)
T PF06180_consen 121 PEDYEAVAEALAEEFPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKK 195 (262)
T ss_dssp HHHHHHHHHHHHCCS-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhc
Confidence 4667777777766422 22 3335889999995 1123333 5656677776666543
No 15
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=28.26 E-value=1.1e+02 Score=19.92 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=8.8
Q ss_pred CCceEEEEecCC
Q psy13940 1 MKFKLVSQEDHS 12 (88)
Q Consensus 1 ~~f~v~~~~~~t 12 (88)
|||.|.+..+..
T Consensus 20 lg~~v~v~d~r~ 31 (136)
T PF13478_consen 20 LGFRVTVVDPRP 31 (136)
T ss_dssp CTEEEEEEES-C
T ss_pred CCCEEEEEcCCc
Confidence 688888888764
No 16
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=28.15 E-value=12 Score=19.09 Aligned_cols=9 Identities=44% Similarity=1.018 Sum_probs=7.6
Q ss_pred cccCCCCCe
Q psy13940 75 CRTLAGKPK 83 (88)
Q Consensus 75 c~~L~gKPK 83 (88)
|..|..|||
T Consensus 7 C~~m~~kpK 15 (32)
T PF11216_consen 7 CEDMKEKPK 15 (32)
T ss_pred HHHHhhCCc
Confidence 778889997
No 17
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=27.68 E-value=1e+02 Score=22.63 Aligned_cols=9 Identities=44% Similarity=0.921 Sum_probs=6.0
Q ss_pred CCCCCeEEE
Q psy13940 78 LAGKPKIFF 86 (88)
Q Consensus 78 L~gKPKlff 86 (88)
++..||+|+
T Consensus 91 i~~~PK~fi 99 (308)
T cd07062 91 IKKNPKIFI 99 (308)
T ss_pred HhhCCCEEE
Confidence 446688775
No 18
>PLN02282 phosphoglycerate kinase
Probab=27.49 E-value=1e+02 Score=24.15 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhhcc
Q psy13940 17 LVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70 (88)
Q Consensus 17 Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~~f 70 (88)
........+|+.+.++.-. +++|||=++++. .|..++++-+.+.+
T Consensus 40 ~RI~a~lpTI~~l~~~gak------vVl~SHlGRP~g---~~~~~SL~~va~~L 84 (401)
T PLN02282 40 TRIRAAVPTIKYLMGHGAR------VILCSHLGRPKG---VTPKYSLKPLVPRL 84 (401)
T ss_pred HHHHHHHHHHHHHHHCCCe------EEEEecCCCCCC---CCcccCHHHHHHHH
Confidence 4445566677777654222 888899664644 24347777665554
No 19
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=27.31 E-value=1e+02 Score=15.99 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhccCCCCCeEEEEEecCCC
Q psy13940 19 ITVLTHGLGELSQEDHSDADCLVITVLTHGL 49 (88)
Q Consensus 19 ~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~ 49 (88)
.+++.+.++.+..+ -+|+-||+
T Consensus 20 ~~~L~~~i~~~~p~---------~vilVHGe 41 (43)
T PF07521_consen 20 REELLEFIEQLNPR---------KVILVHGE 41 (43)
T ss_dssp HHHHHHHHHHHCSS---------EEEEESSE
T ss_pred HHHHHHHHHhcCCC---------EEEEecCC
Confidence 67888888888543 57788987
No 20
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=26.40 E-value=1.3e+02 Score=19.90 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=13.3
Q ss_pred EEEecCCCC-CccEEeeCCc
Q psy13940 42 ITVLTHGLG-ERYLWAYDMP 60 (88)
Q Consensus 42 ~~ilSHG~~-~~~i~~~D~~ 60 (88)
++|..||.. -+.+++..|.
T Consensus 155 viig~hGs~l~n~~F~~~~s 174 (206)
T PF04577_consen 155 VIIGPHGSALTNLLFMPPGS 174 (206)
T ss_pred EEEecCchHhheeeecCCCC
Confidence 788999985 4566665554
No 21
>PLN03034 phosphoglycerate kinase; Provisional
Probab=25.06 E-value=1.1e+02 Score=24.57 Aligned_cols=47 Identities=11% Similarity=-0.015 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhhcc
Q psy13940 15 DCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70 (88)
Q Consensus 15 ~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~~f 70 (88)
|+........+|+.+.+..-. ++|+||=++++. .|..++++-+.+.+
T Consensus 113 Dd~RI~a~lpTI~~L~~~gak------vVl~SHlGRPkg---~~~~~SL~pva~~L 159 (481)
T PLN03034 113 DDTRIRAAIPTIKYLISNGAK------VILSSHLGRPKG---VTPKFSLAPLVPRL 159 (481)
T ss_pred ChHhHHHHHHHHHHHHHCCCe------EEEEEecCCCCC---CCcccCHHHHHHHH
Confidence 334455666777777654222 888899554644 34347777666555
No 22
>COG3933 Transcriptional antiterminator [Transcription]
Probab=24.36 E-value=85 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.7
Q ss_pred CeEEEEEecCCCC--------------CccEEeeCCc--cchHhhhhcc
Q psy13940 38 DCLVITVLTHGLG--------------ERYLWAYDMP--YFVEKLWLPF 70 (88)
Q Consensus 38 dc~v~~ilSHG~~--------------~~~i~~~D~~--v~~~~I~~~f 70 (88)
+=.-++|++||.+ ++.+-|-|.| ++.+++.+-+
T Consensus 107 ~~v~vIiiAHG~sTASSmaevanrLL~~~~~~aiDMPLdvsp~~vle~l 155 (470)
T COG3933 107 PRVKVIIIAHGYSTASSMAEVANRLLGEEIFIAIDMPLDVSPSDVLEKL 155 (470)
T ss_pred CceeEEEEecCcchHHHHHHHHHHHhhccceeeecCCCcCCHHHHHHHH
Confidence 4445889999996 4567777998 7777765543
No 23
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=23.47 E-value=42 Score=26.09 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=16.4
Q ss_pred EEeeC---CccchHhhhhccCcCccccCCCCCeEEEe
Q psy13940 54 LWAYD---MPYFVEKLWLPFTADKCRTLAGKPKIFFI 87 (88)
Q Consensus 54 i~~~D---~~v~~~~I~~~f~~~~c~~L~gKPKlffi 87 (88)
-|+.| +.++++++.+.... -||||+++
T Consensus 146 ~y~~d~~~~~ID~d~l~~~a~~-------~kPklIi~ 175 (399)
T PF00464_consen 146 PYPVDPDTGLIDYDELEKLAKE-------HKPKLIIC 175 (399)
T ss_dssp EEEB-TTTSSB-HHHHHHHHHH-------H--SEEEE
T ss_pred eeeeecCCCeECHHHHHHHHhh-------cCCCEEEE
Confidence 47777 33899999887642 57998875
No 24
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=22.98 E-value=1.3e+02 Score=23.62 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhhcc
Q psy13940 15 DCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70 (88)
Q Consensus 15 ~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~~f 70 (88)
|+...+.-..+|+.+.+. .+-.++||||-+++.. ..|..++++-+.+.+
T Consensus 37 Dd~RI~~~lpTI~~L~~~-----gak~vvl~SHlGRP~g--~~~~~~SL~~va~~L 85 (417)
T PTZ00005 37 DATRIKATLPTIKYLLEQ-----GAKSVVLMSHLGRPDG--RRVEKYSLKPVVPKL 85 (417)
T ss_pred ChHhHHHHHHHHHHHHHC-----CCCEEEEEecCCCCCC--CcCcccCHHHHHHHH
Confidence 334455666677777654 3324899999664532 123346776665555
No 25
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=22.81 E-value=81 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.7
Q ss_pred EEEecCCCCCccEE
Q psy13940 42 ITVLTHGLGERYLW 55 (88)
Q Consensus 42 ~~ilSHG~~~~~i~ 55 (88)
+.++|||. .....
T Consensus 2 ~~fi~HG~-p~~~~ 14 (253)
T cd07363 2 VLFISHGS-PMLAL 14 (253)
T ss_pred eEEeCCCC-ccccc
Confidence 56889999 44433
No 26
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=22.32 E-value=1.7e+02 Score=22.35 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHhhhcc--------CCCCCeEEEEEecCCCCCccEEeeCCc-cchHhhhhcc
Q psy13940 17 LVITVLTHGLGELSQED--------HSDADCLVITVLTHGLGERYLWAYDMP-YFVEKLWLPF 70 (88)
Q Consensus 17 Lt~~ei~~~l~~~~~~~--------~~~~dc~v~~ilSHG~~~~~i~~~D~~-v~~~~I~~~f 70 (88)
.|.+.+.+.|.+-+.++ ..+.+-+++..-.||+ ++-+.-.|-. ++-+||.+.+
T Consensus 110 vTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGg-d~FlKFqdaeemtseDladai 171 (382)
T COG5206 110 VTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGG-DAFLKFQDAEEMTSEDLADAI 171 (382)
T ss_pred chHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCC-ccceecccHHHhhhHHHHHHH
Confidence 35577777777766543 3567788899999999 9988888876 7777776654
No 27
>PF05274 Baculo_E25: Occlusion-derived virus envelope protein E25; InterPro: IPR007938 This family consists of several nucleopolyhedrovirus occlusion-derived virus envelope E25 proteins. The N terminus of this protein is extremely hydrophobic, studies suggest that this defined hydrophobic domain is sufficient to direct the protein to induced membrane microvesicles within a baculovirus-infected cell nucleus and the viral envelope. In addition, movement of the protein into the nuclear envelope may initiate through cytoplasmic membranes, such as endoplasmic reticulum, and that transport into the nucleus may be mediated through the outer and inner nuclear membrane [].; GO: 0019031 viral envelope, 0042025 host cell nucleus
Probab=21.92 E-value=81 Score=22.12 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.4
Q ss_pred EecCCCC-CccEEeeCCccchHhhhhcc
Q psy13940 44 VLTHGLG-ERYLWAYDMPYFVEKLWLPF 70 (88)
Q Consensus 44 ilSHG~~-~~~i~~~D~~v~~~~I~~~f 70 (88)
=.+||+. -..||-++.|++.++|++.=
T Consensus 28 Ri~hgdNkiSkv~VaE~Pl~y~~Ivd~G 55 (182)
T PF05274_consen 28 RIAHGDNKISKVYVAERPLSYDEIVDEG 55 (182)
T ss_pred EEEecCCceeEEEEeecCcCHHHHHhhc
Confidence 3689995 46899999999999999864
No 28
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=21.45 E-value=1.7e+02 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.409 Sum_probs=18.6
Q ss_pred HHHHHHHhhh-ccCCCCCeEEEEEecCCC
Q psy13940 22 LTHGLGELSQ-EDHSDADCLVITVLTHGL 49 (88)
Q Consensus 22 i~~~l~~~~~-~~~~~~dc~v~~ilSHG~ 49 (88)
+.+...+.++ ........++++|+++|.
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~ 119 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQ 119 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccc
Confidence 3344444443 234667889999999999
No 29
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=20.73 E-value=2.7e+02 Score=20.14 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=6.0
Q ss_pred CCCCCeEEE
Q psy13940 78 LAGKPKIFF 86 (88)
Q Consensus 78 L~gKPKlff 86 (88)
+...||+|+
T Consensus 87 ~~~~pK~~i 95 (282)
T cd07025 87 IRANPKIFV 95 (282)
T ss_pred HhhCCeEEE
Confidence 346788875
No 30
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=20.57 E-value=1.8e+02 Score=22.66 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCccEEeeCCccchHhhhhcc
Q psy13940 16 CLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPF 70 (88)
Q Consensus 16 ~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~i~~~D~~v~~~~I~~~f 70 (88)
+...+.-..+|+.+.++. +- +++|||=++++. .|...+++-+.+.+
T Consensus 32 d~RI~~~lpTI~~l~~~g-----ak-vvl~sH~gRP~g---~~~~~SL~~va~~L 77 (389)
T PRK00073 32 DTRIRAALPTIKYLLEKG-----AK-VILLSHLGRPKG---EDPEFSLAPVAKRL 77 (389)
T ss_pred hHhHHHHHHHHHHHHHCC-----Ce-EEEEEecCCCCC---CCCCcCHHHHHHHH
Confidence 334455666777766542 22 888899664644 23336666555544
No 31
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=20.49 E-value=1e+02 Score=22.26 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.4
Q ss_pred CccEEeeCCccchHhhhhccCcCccccCCCCCeEE
Q psy13940 51 ERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85 (88)
Q Consensus 51 ~~~i~~~D~~v~~~~I~~~f~~~~c~~L~gKPKlf 85 (88)
.|.||-.|+++.++++++.+. .||++.
T Consensus 208 GgRVfFVd~~~dln~yI~~Le--------~kp~lI 234 (239)
T COG1424 208 GGRVFFVDDCIDLNHYISFLE--------SKPKLI 234 (239)
T ss_pred CcEEEEEcCcccHHHHHHHHh--------cCCEEE
Confidence 578999999999999887654 577765
No 32
>KOG3349|consensus
Probab=20.20 E-value=1.2e+02 Score=21.05 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=19.5
Q ss_pred CceEEEEecCCCcccchHHHHHHHHHHhhhccCCCCCeEEEEEecCCCCCcc
Q psy13940 2 KFKLVSQEDHSDADCLVITVLTHGLGELSQEDHSDADCLVITVLTHGLGERY 53 (88)
Q Consensus 2 ~f~v~~~~~~t~~~~Lt~~ei~~~l~~~~~~~~~~~dc~v~~ilSHG~~~~~ 53 (88)
|+++..|+-.+. |.+-+++. -.+.||++ .|.
T Consensus 62 gl~id~y~f~ps--------l~e~I~~A------------dlVIsHAG-aGS 92 (170)
T KOG3349|consen 62 GLTIDGYDFSPS--------LTEDIRSA------------DLVISHAG-AGS 92 (170)
T ss_pred CeEEEEEecCcc--------HHHHHhhc------------cEEEecCC-cch
Confidence 677888887665 44444331 35679988 553
No 33
>KOG3734|consensus
Probab=20.12 E-value=85 Score=23.36 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=22.9
Q ss_pred EEEEecCCCCCccEEee---------CCccchHhhhhccCc
Q psy13940 41 VITVLTHGLGERYLWAY---------DMPYFVEKLWLPFTA 72 (88)
Q Consensus 41 v~~ilSHG~~~~~i~~~---------D~~v~~~~I~~~f~~ 72 (88)
.+++|.||++-|.+++. ||++.-.|+--++..
T Consensus 14 ~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l 54 (272)
T KOG3734|consen 14 NIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRL 54 (272)
T ss_pred eEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccc
Confidence 47899999987767765 466666666666654
No 34
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=20.11 E-value=30 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCCccEEee-CCc-cchHhhhhccCcCccccCCCCCeEEEe
Q psy13940 39 CLVITVLTHGLGERYLWAY-DMP-YFVEKLWLPFTADKCRTLAGKPKIFFI 87 (88)
Q Consensus 39 c~v~~ilSHG~~~~~i~~~-D~~-v~~~~I~~~f~~~~c~~L~gKPKlffi 87 (88)
|-.|--+..|+.+|..+-. +|. +++++|.+....-.-+...|+-|+|||
T Consensus 60 C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II 110 (290)
T PRK07276 60 CRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFII 110 (290)
T ss_pred CHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEe
Confidence 4555666777766655443 566 888877765433233456788899997
Done!