RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13940
         (88 letters)



>gnl|CDD|237997 cd00032, CASc, Caspase, interleukin-1 beta converting enzyme (ICE)
           homologues; Cysteine-dependent aspartate-directed
           proteases that mediate programmed cell death
           (apoptosis). Caspases are synthesized as inactive
           zymogens and activated by proteolysis of the peptide
           backbone adjacent to an aspartate. The resulting two
           subunits associate to form an (alpha)2(beta)2-tetramer
           which is the active enzyme. Activation of caspases can
           be mediated by other caspase homologs.
          Length = 243

 Score = 80.3 bits (199), Expect = 3e-20
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 26  LGELSQEDHSDADCLVITVLTHGLGERYLWAYD-MPYFVEKLWLPFTADKCRTLAGKPKI 84
           L E +  DHSD+D  V  +L+HG  E  ++  D     ++++   F  D C +LAGKPK+
Sbjct: 63  LKEFASPDHSDSDSFVCVILSHG-EEGGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKL 121

Query: 85  FFIQ 88
           FFIQ
Sbjct: 122 FFIQ 125


>gnl|CDD|214521 smart00115, CASc, Caspase, interleukin-1 beta converting enzyme
           (ICE) homologues.  Cysteine aspartases that mediate
           programmed cell death (apoptosis). Caspases are
           synthesised as zymogens and activated by proteolysis of
           the peptide backbone adjacent to an aspartate. The
           resulting two subunits associate to form an
           (alpha)2(beta)2-tetramer which is the active enzyme.
           Activation of caspases can be mediated by other caspase
           homologues.
          Length = 241

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 26  LGELSQ-EDHSDADCLVITVLTHGLGERYLWAYD-MPYFVEKLWLPFTADKCRTLAGKPK 83
           L E +   +HSD+D  V  +L+HG  E  ++  D  P  +++++  F  D C +LAGKPK
Sbjct: 61  LKEFAAMPEHSDSDSFVCVLLSHG-EEGGIYGTDGDPLPLDEIFSLFNGDNCPSLAGKPK 119

Query: 84  IFFIQ 88
           +FFIQ
Sbjct: 120 LFFIQ 124


>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain. 
          Length = 228

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 26  LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMP-YFVEKLWLPFTADKCRTLAGKPKI 84
           L E +       D  V+    HG  +  ++  D     V+ L   F    C +L GKPK+
Sbjct: 53  LREFAA-RADPGDSFVVVYSGHG-VQGEVYGGDGYLVPVDALDDVFNGLNCPSLKGKPKL 110

Query: 85  FFIQ 88
           F I 
Sbjct: 111 FIID 114


>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 557

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 52  RYLWAYDMPYFVEKLWLP----FTADKCRTLAGKPKI 84
           RYL+    P    + WL       AD    LAGK  I
Sbjct: 385 RYLFGTIPPGPTPQEWLDSGYMKRADTIEELAGKTGI 421


>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
           Provisional.
          Length = 233

 Score = 25.0 bits (54), Expect = 6.7
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 33  DHSDADCLVITVLTHGLGERYLW--AYDMPYFVEKLWLPFT 71
           D  D D ++ T     L    LW  AY   YF +KLW  FT
Sbjct: 169 DVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFT 209


>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
          Length = 1066

 Score = 24.9 bits (54), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query: 59  MPYFVEKLW--LPFTADKCR 76
           MP+  E+LW  LP   D  R
Sbjct: 859 MPFVTEELWQRLPQPKDHTR 878


>gnl|CDD|235001 PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.
          Length = 523

 Score = 24.8 bits (55), Expect = 8.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 49  LGERYLWAYDMPYFVEK 65
           LG+  LW   MP ++  
Sbjct: 93  LGDERLWPLSMPCYLPA 109


>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
          Length = 485

 Score = 24.6 bits (54), Expect = 9.0
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 19  ITVLTHGLG----ELSQEDHSDADCLVITVLTHG--LGERYLWAYDMPY 61
           IT + H +G     L +    D + +++ V  HG  LG+ YL+    PY
Sbjct: 274 ITHIDHQIGRFLQALKEFGLLD-NTIILFVSDHGDMLGDHYLFRKGYPY 321


>gnl|CDD|226190 COG3664, XynB, Beta-xylosidase [Carbohydrate transport and
          metabolism].
          Length = 428

 Score = 24.4 bits (53), Expect = 9.3
 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 47 HGLGERYLWAYD-MPYFVEKLWLPFTAD 73
            +   Y+  +       +KL+ PFT  
Sbjct: 15 DEIQVNYIRRHGVWHVNAQKLFYPFTYI 42


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,341,747
Number of extensions: 339853
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 12
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)