RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13940
         (88 letters)



>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera
           frugiperda) [TaxId: 7108]}
          Length = 256

 Score = 60.5 bits (146), Expect = 3e-13
 Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 26  LGELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
           + + ++ DHSDADCL++ VLTHG     L+A D  Y  + LW  FTADKC TLAGKPK+F
Sbjct: 76  IQQTAEMDHSDADCLLVAVLTHG-ELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLF 134

Query: 86  FIQ 88
           FIQ
Sbjct: 135 FIQ 137


>g1nme.1 c.17.1.1 (A:,B:) Apopain (caspase-3, cpp32) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 238

 Score = 54.3 bits (130), Expect = 4e-11
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 28  ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
           ++S+EDHS     V  +L+HG  E  ++  + P  ++K+   F  D+CR+L GKPK+F I
Sbjct: 74  DVSKEDHSKRSSFVCVLLSHG-EEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFII 132

Query: 88  Q 88
           Q
Sbjct: 133 Q 133


>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a
           cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 52.9 bits (126), Expect = 2e-10
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 31  QEDHSDADCLVITVLTHG-----LGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIF 85
           + +H  +D   +  ++HG      G+++         +  ++       C +L  KPK+ 
Sbjct: 97  RPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVI 156

Query: 86  FIQ 88
            IQ
Sbjct: 157 IIQ 159


>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 245

 Score = 50.2 bits (119), Expect = 1e-09
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 28  ELSQEDHSDADCLVITVLTHGLGERYLWAYDMPYFVEKLWLPFTADKCRTLAGKPKIFFI 87
           + S+EDH++A C    +L+HG  E  ++  D    ++ L   F  D+ +TL  KPK+FFI
Sbjct: 68  KASEEDHTNAACFACILLSHG-EENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFI 126

Query: 88  Q 88
           Q
Sbjct: 127 Q 127


>g1qtn.1 c.17.1.1 (A:,B:) Caspase-8 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 242

 Score = 49.8 bits (118), Expect = 2e-09
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 28  ELSQEDHSDADCLVITVLTHGLGERYLWAYD-MPYFVEKLWLPFTADKCRTLAGKPKIFF 86
                DHS+ DC +  +L+HG  +  ++  D     + +L   FT  KC +LAGKPK+FF
Sbjct: 76  IYQLMDHSNMDCFICCILSHG-DKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFF 134

Query: 87  IQ 88
           IQ
Sbjct: 135 IQ 136


>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 257

 Score = 49.0 bits (116), Expect = 5e-09
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 31  QEDHSDADCLVITVLTHGLGERYLWAYD-MPYFVEKLWLPFTADKCRTLAGKPKIFFIQ 88
              H   D  ++ +L+HG  E  ++  D     +++++  F    C +L  KPK+FFIQ
Sbjct: 88  LPAHRVTDSCIVALLSHG-VEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQ 145


>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 277

 Score = 46.0 bits (108), Expect = 6e-08
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 28  ELSQEDHSDADCLVITVLTHGLGERYL------WAYD-MPYFVEKLWLPFTADKCRTLAG 80
           EL+++DH   DC V+ +L+HG    +L      +  D  P  VEK+   F    C +L G
Sbjct: 79  ELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGG 138

Query: 81  KPKIFFIQ 88
           KPK+FFIQ
Sbjct: 139 KPKLFFIQ 146


>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score = 26.7 bits (58), Expect = 0.33
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 29  LSQEDHSDADCLVITVLTHGLGERYLW--AYDMPYFVEKLWLPFT 71
           L   +  D + L+ T     L    +W  +Y    F+++ W  F 
Sbjct: 171 LFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFN 215


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 23.6 bits (50), Expect = 3.8
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 33  DHSDADCLVITVLTHGLGERYLW--AYDMPYFVEKLWLPFT 71
           + +  D ++ T   H +    LW  AY   YF + LW  F 
Sbjct: 173 ELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFD 213


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,627
Number of extensions: 12404
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 12
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)