BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13944
         (1217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y71|A Chain A, X-Ray Crystal Structure Of Kinase-Associated Protein B
           From Bacillus Cereus
 pdb|1Y71|B Chain B, X-Ray Crystal Structure Of Kinase-Associated Protein B
           From Bacillus Cereus
          Length = 130

 Score = 30.0 bits (66), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 318 KQNIKEKFIDKYNNNVPDTDDSFKMSTQTQ 347
           + NI E+ + KY   +PD  +S K++ +TQ
Sbjct: 73  QTNIPEQXVKKYEGEIPDYTESLKLALETQ 102



 Score = 30.0 bits (66), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 964 KQNIKEKFIDKYNNNVPDTDDSFKMSTQTQ 993
           + NI E+ + KY   +PD  +S K++ +TQ
Sbjct: 73  QTNIPEQXVKKYEGEIPDYTESLKLALETQ 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,192,241
Number of Sequences: 62578
Number of extensions: 1326896
Number of successful extensions: 3524
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3520
Number of HSP's gapped (non-prelim): 4
length of query: 1217
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1107
effective length of database: 8,089,757
effective search space: 8955360999
effective search space used: 8955360999
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)