RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13944
(1217 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 132 bits (334), Expect = 9e-33
Identities = 53/256 (20%), Positives = 86/256 (33%), Gaps = 30/256 (11%)
Query: 26 KDFFADDAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVK 85
+ F + LR +R+ V+ D LGLD+ + L E V+++ AA V
Sbjct: 120 EKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVN 179
Query: 86 FDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTHIE 145
+ F N GT +L+++A K L F YVSTA I+ F E +
Sbjct: 180 AFPY-HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIE--PSAFTEDADIRVI 235
Query: 146 MEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVREKMDK--LPLGIVRPSIVMP 203
+ Y SK A E ++RE D LP+ + R +++
Sbjct: 236 SPT--------------RTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILA 281
Query: 204 VVEEPCPMWVKGMNGLTAMYV-AVGLGIM-------RTVYQNTSNIVDMVPGDLVVNILL 255
+ + +T M + + GI + D +P V +
Sbjct: 282 DTSY--AGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIA 339
Query: 256 AAAWDVARRVKKLDTI 271
VA
Sbjct: 340 VLGARVAGSSLAGFAT 355
Score = 99.6 bits (248), Expect = 8e-22
Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 525 KSRLRDFFADDAFDLLRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVA 584
+ RL F +LLR +R+ V+ D LGLD+ L E V+++ A
Sbjct: 116 RRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSA 175
Query: 585 ATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLY 644
A V + F N GT +L+++A K L F YVSTA I+ F E
Sbjct: 176 AMVNAFPY-HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIE--PSAFTEDAD 231
Query: 645 THIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSK 680
+ + Y SK
Sbjct: 232 IRVISPT--------------RTVDGGWAGGYGTSK 253
Score = 30.3 bits (68), Expect = 4.9
Identities = 6/62 (9%), Positives = 11/62 (17%), Gaps = 2/62 (3%)
Query: 856 PMWVKGMNGLTAMYVAVGLGIMRTVYQNTSNIVDMVPGDLVVNILLAAAWDVARRVKKLD 915
V + + + D +P V + VA
Sbjct: 296 TRMVLSL--MATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGF 353
Query: 916 TI 917
Sbjct: 354 AT 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 1e-12
Identities = 90/665 (13%), Positives = 194/665 (29%), Gaps = 212/665 (31%)
Query: 304 NHGNYDT-TNHVNYIKQNIKEKFIDKYNNNVPDTDDSFKMSTQTQNLAD---SVISNQSV 359
+H + D T Y +Y + + +D+F + +++ D S++S + +
Sbjct: 3 HHHHMDFETGEHQY-----------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 360 SNKSNGEHSD-RIYHMVSCVENPIALGKSTELTIYYSNQAKEGCEKSL-----WC---IH 410
+ + + + + + ++ E+ L + I
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 411 HNPTGKKWLYFTYFY----LYNLLPTLV-FFVF-----------LEKL------------ 442
+ Y LYN + V L +L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 443 -SGK----------KAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKLFNTLNSKDRK 491
SGK K+ K+F+LN + N + + L++ L +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKN------CNSPETVLEMLQKLLYQIDP 211
Query: 492 MFGFSMKKVSWLFFHLNLHRSLSKYAIHVPDLTKSRLRDFFADDAF--DLLRKENV---- 545
+ + S + + + ++ LR + LL NV
Sbjct: 212 NW-------------TSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 546 -----NFTERIVVLTADLQ------------------SDGLGLDEKAKEVLREDVNIVFH 582
N + +I++ T Q S L DE K +L + ++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQ 316
Query: 583 ----------------VAATVK-FDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVST 625
+A +++ + +NC +++ + + L+ Y
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEY-RK 373
Query: 626 AYSNCNI----KKIEEKFYEPLYTHI---EMEQIINSCSHTELTVLNDILIKPMPNTYTL 678
+ ++ I ++ + ++ ++N L++ P T+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-------HKYSLVEKQPKESTI 426
Query: 679 SKNAWYIICLSFWGCARSREKCSHDRGV-RVCRNHPVGETIADNRHQQNLHPLSRQEYIF 737
S + Y+ + K ++ + R +H I +L P +Y +
Sbjct: 427 SIPSIYL---------ELKVKLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFY 474
Query: 738 SDTG------------CFFSINLHSLCMIEKKVQPNINTTLPYSVALTVSTNTSDKTMGN 785
S G F + +E+K+ + + ++ + ++
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQ----- 526
Query: 786 NSVHGSLKRRRKKSIEEITD-DPFKSEENAPQTILDFYDKRDEDALSDKL-----IEFDA 839
LK + I D DP E ILDF K +E+ + K I A
Sbjct: 527 ------LKFYKPY----ICDNDP--KYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 840 EESEI 844
E+ I
Sbjct: 575 EDEAI 579
Score = 54.9 bits (131), Expect = 2e-07
Identities = 96/695 (13%), Positives = 178/695 (25%), Gaps = 231/695 (33%)
Query: 506 HLNLHRSLSKYAIH--VPDLTKSRLRDFFADDAFDLLRKENVNFTERIVVLTADLQSDGL 563
H++ +Y + + + +F D D+ + +L+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----------ILS-------- 47
Query: 564 GLDEKAKEVLREDVNIVFHVAATVKFDEHFQTAFEINC---KGTEKLLKMAEEMKNLD-S 619
E+ ++ D T K E + K EE+ ++
Sbjct: 48 --KEEIDHIIMSK-------------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 620 FIYVSTAYSNCNIKKIEEKFY----EPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNT 675
F+ + + Y + LY ++ N L L++
Sbjct: 93 FLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----- 146
Query: 676 YTLSKNAWYII---------CLSFWGCARSREKCSHDRGV-----RVCRNHPVGETIADN 721
L +I ++ C + +C D + + C + ET+ +
Sbjct: 147 --LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEM 201
Query: 722 RHQQNLHPLSRQEY-IFSDTGCFFSINLHSLCMIEKKVQPNINTTLPYSVALTVSTNTSD 780
Q L + SD + +HS+ + + + PY L V N +
Sbjct: 202 --LQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNVQN 255
Query: 781 K--------------TMGNNSVHGSL--KRRRKKSIEEITDDPFKSEEN----------- 813
T V L S++ +E
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCR 314
Query: 814 -----------APQTILDFYDK-RDEDALSD--KLIEFDAEESEIQAFYKVVEEPCPMWV 859
P+ + + RD A D K + D + I++ V+E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----- 369
Query: 860 KGMNGLTAMYVAVGLGIMRTVYQNTSNIVDMVPGDLVVNI---LLAAAWDVARRVKKLDT 916
R ++ S + P +I LL+ W D
Sbjct: 370 ----------------EYRKMFDRLS----VFPPS--AHIPTILLSLIWF--------DV 399
Query: 917 ITRSDQNVEAKLIDPNNNVEEESIKKLDVN---YEINHGNYDTTNHVNYIKQNIKEKFID 973
I V KL S+ + I + + + +D
Sbjct: 400 IKSDVMVVVNKLHK-------YSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVD 451
Query: 974 KYNNNVPDTDDSFKMSTQTQNLADSVISNQSVSNKSNGEHSDRI-YHMVSCVENPIALGK 1032
Y N+P T DS + D + H I +H+ + E+P +
Sbjct: 452 HY--NIPKTFDSDDLIPPY---LDQYFYS----------H---IGHHLKNI-EHP---ER 489
Query: 1033 STELTIYYSN----QAKEGCEKSLWCIHHNPTGKKWLYFTYFYLYNLLPTLVFFVFLEKL 1088
T + + + + K I H W +L TL
Sbjct: 490 MTLFRMVFLDFRFLEQK---------IRH--DSTAWNASGS-----ILNTL--------- 524
Query: 1089 SGKKAQLMKIYRKVFFLN--------TTIANFSIN 1115
Q +K Y+ N I +F
Sbjct: 525 -----QQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Score = 46.0 bits (108), Expect = 8e-05
Identities = 72/502 (14%), Positives = 137/502 (27%), Gaps = 170/502 (33%)
Query: 14 KTCKHNSILW--VAKDFFADDAFDRLRK----------ENANFTERIVVLTADLQS--DG 59
+ I W + + + L+K ++ + I + +Q+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 60 LGLDEKEKK---VLREDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDS 116
L + + VL +V A F ++CK
Sbjct: 237 LLKSKPYENCLLVLL-NVQNAKAWNA-----------FNLSCK----------------- 267
Query: 117 FIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQIINSCSHTE-LTVLNDIL-IKPMPNTYT 174
I ++T + K++ + THI ++ + + E ++L L +P
Sbjct: 268 -ILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QD 317
Query: 175 LSKNACEQMVREKMDKLPLGIVRPSIVMPVVEEPCPMW-----VKGMNGLTAMYVAVGL- 228
L + P + SI+ + + W V T + ++ +
Sbjct: 318 LPREVL--------TTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 229 --GIMRTVYQNTSNIVDMVPGDLVVNI---LLAAAWDVARRVKKLDTITRSDQNVEAKLI 283
R ++ S + P +I LL+ W D I V KL
Sbjct: 367 EPAEYRKMFDRLS----VFPPS--AHIPTILLSLIWF--------DVIKSDVMVVVNKLH 412
Query: 284 DPNNNVEEESIKKLDVN---YEINHGNYDTTNHVNYIKQNIKEKFIDKYNNNVPDTDDSF 340
S+ + I + + + +D Y N+P T DS
Sbjct: 413 K-------YSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHY--NIPKTFDSD 462
Query: 341 KMSTQTQNLADSVISNQSVSNKSNGEHSDRI-YHMVSCVENPIALGKSTELTIYYSN--- 396
+ D + H I +H+ + E+P + T + + +
Sbjct: 463 DLIPPY---LDQYFYS----------H---IGHHLKNI-EHP---ERMTLFRMVFLDFRF 502
Query: 397 -QAKEGCEKSLWCIHHNPTGKKWLYFTYFYLYNLLPTLVFFVFLEKLSGKKAQLMKIYRK 455
+ K I H W +L TL Q +K Y+
Sbjct: 503 LEQK---------IRH--DSTAWNASGS-----ILNTL--------------QQLKFYKP 532
Query: 456 VFFLN--------TTIANFSIN 469
N I +F
Sbjct: 533 YICDNDPKYERLVNAILDFLPK 554
Score = 37.9 bits (87), Expect = 0.022
Identities = 49/393 (12%), Positives = 110/393 (27%), Gaps = 133/393 (33%)
Query: 906 DVARRV---KKLDTITRSDQNVEA--KLID-----PNNNVEEESIKKLDVNYE-----IN 950
D+ + + +++D I S V +L V++ + L +NY+ I
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 951 HGNYDTT-NHVNYIKQ-----NIKEKFIDKYNNNVPDTDDSFKMSTQTQNLADSVISNQS 1004
+ YI+Q N + F KYN V + + + + ++
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYN--VS----RLQPYLKLRQALLELRPAKN 152
Query: 1005 VSNKSNGEHSDRIYHMVSCVENPIALGKSTELT----------------IYYSNQAKEGC 1048
V I ++ GK+ + I++ N
Sbjct: 153 VL----------IDGVLGS-------GKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 1049 EKSLWCIHHNPTGKKWLYFTYFYLYNLLPTLVFFVFLEKLSGKKAQLMKIYRKVF----- 1103
+++ + L + + + L S + + K +
Sbjct: 195 PETVLEMLQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 1104 -------------F------LNTT----IANF---------SINE--WSFTNDNALKLF- 1128
F L TT + +F S++ + T D L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 1129 NTLNSKDRK--------------MFGFSMK--KVSWLFF-HLNLHRSLSKYAIHVPVTK- 1170
L+ + + + S++ +W + H+N + L+ I +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTT-IIESSLNVL 366
Query: 1171 KLYVTKHRYMLIADFI--VLTTIKLVLVYLLCW 1201
+ + + ++ F +L + W
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTI-LLSLI--W 396
Score = 37.9 bits (87), Expect = 0.022
Identities = 41/294 (13%), Positives = 85/294 (28%), Gaps = 74/294 (25%)
Query: 950 NHGNYDT-TNHVNYIKQNIKEKFIDKY--NNNVPDTDDSFKMSTQTQNLADSVISNQSVS 1006
+H + D T Y ++I F D + N + D D K S++S + +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK----------SILSKEEID 52
Query: 1007 NKSNGEHSD-RIYHMVSCVENPIALGKSTELTIYYSNQAKEGCEKSLWCIHHNPTGKKWL 1065
+ + + + + + ++ E+ L K+L
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEVL------RINYKFL 94
Query: 1066 YFTYFYLYN--LLPTLVFFVFLEKLSGKKAQLMK--IYR--KVFFLNTTIANFSINEWSF 1119
+ T ++ ++L K + R L + +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-- 152
Query: 1120 TNDNALKLF------------NTLNSKDRK-MFGFSMKKVSWLFFHLNLHRSLSKYAIHV 1166
+ + + S + F K+ WL NL S +
Sbjct: 153 -----VLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWL----NLKNCNSPETVLE 200
Query: 1167 PVTKKLYVTKHRYMLIADF-----IVLTTIKLVLVYLLCWL----SLFILRNIK 1211
+ K LY + +D + + +I+ L LL L +L N++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Score = 32.9 bits (74), Expect = 0.80
Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 57/176 (32%)
Query: 13 AKTCKHNSILWVAKDFFADDAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKK---- 68
A++ + W D + D+L ++ + L L+ E +
Sbjct: 334 AESIRDGLATW---DNWKHVNCDKLTT----------IIESSLNV----LEPAEYRKMFD 376
Query: 69 ---VLREDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMA-EEMKNLDSFIYVSTAY 124
V +I LL + ++ D + V+
Sbjct: 377 RLSVFPPSAHI------------------------PTILLSLIWFDVIKSDVMVVVNK-- 410
Query: 125 SNCNIKKIEEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNAC 180
+ + EK + I + L+ ++ + Y + K
Sbjct: 411 --LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFD 460
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 64.2 bits (157), Expect = 7e-11
Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 43/192 (22%)
Query: 72 EDVNIVFHVAATVKFD-EHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVST--AYSNCN 128
++ V A +Q T + + + +YV + A
Sbjct: 76 RGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHP 134
Query: 129 IKKI--EEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVRE 186
E FY+ L ++Y L K A ++ RE
Sbjct: 135 QGLPGHEGLFYDSL--------------------------PSGKSSYVLCKWALDEQARE 168
Query: 187 KMDK-LPLGIVRPSIVMPVVEEPCPMWVKGMNGLTAMYVAVGLGIMRTVYQNTSNIVDMV 245
+ LP+ I P +V+ + + + A+G G M N++D
Sbjct: 169 QARNGLPVVIGIPGMVL------GELDIG--PTTGRVITAIGNGEMTHYVAGQRNVIDA- 219
Query: 246 PGDLVVNILLAA 257
+ +L+A
Sbjct: 220 -AEAGRGLLMAL 230
Score = 46.1 bits (110), Expect = 4e-05
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 575 EDVNIVFHVAATVKFD-EHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
++ V A +Q T + + + +YV +A
Sbjct: 76 RGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSA 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-08
Identities = 102/650 (15%), Positives = 186/650 (28%), Gaps = 245/650 (37%)
Query: 381 PIAL--GKSTELTI-------YYSNQAKEGCEKSLWCIHHNPTGKKWLYFTYFYLYNLLP 431
P+ L G S E + + ++Q +E K L PT + P
Sbjct: 8 PLTLSHG-SLEHVLLVPTASFFIASQLQEQFNKIL----PEPTEGFAA--------DDEP 54
Query: 432 T----LV--FFVFLEKLSGKKAQLMKIYRKVFFLNTTIANFSINEWSF--TND-NALKLF 482
T LV F ++ L + +V LN + F E + ND +AL
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKV--GQFDQV--LNLCLTEF---ENCYLEGNDIHALAA- 106
Query: 483 NTLNSKDRKMFGFSMKKVSWL--FFH--LNLHRSLSKYAIHVPDLTKSRLRD---FFA-- 533
L ++ K + + + R K L ++ A
Sbjct: 107 -KLLQENDTTLV---KTKELIKNYITARIMAKRPFDKK--SNSALFRAVGEGNAQLVAIF 160
Query: 534 ------DDAFDLLRK--ENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA 585
DD F+ LR + T ++V DL + + E L E +
Sbjct: 161 GGQGNTDDYFEELRDLYQ----TYHVLV--GDLI-------KFSAETLSE------LIRT 201
Query: 586 TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYT 645
T+ ++ F I + L+ + D Y+ + +C PL
Sbjct: 202 TLDAEKVFTQGLNI-----LEWLENPSNTPDKD---YLLSIPISC-----------PLIG 242
Query: 646 HIEMEQIINSC-----SHTEL--------TVLNDILI-------KPMPNTYTLSKNAWYI 685
I++ + + + EL ++ + + + A
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA--- 299
Query: 686 ICLSFWGCARSREKCSHDRGVRVCRNHPVGETIADNRHQQNLHPLSRQEYIFSDTG---C 742
I + F+ GVR +P +L P ++ + ++ G
Sbjct: 300 ITVLFF------------IGVRCYEAYP----------NTSLPPSILEDSLENNEGVPSP 337
Query: 743 FFSINLHSLCMIEKKVQPNINTTLPYSVALTVS-TNTSDKTMGNNSVHG---SLK----- 793
SI+ + ++ V N+ LP + +S N + N V G SL
Sbjct: 338 MLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAK----NLVVSGPPQSLYGLNLT 392
Query: 794 -RR----------------RKKSIEE----ITDDPFKSE--ENAPQTILDFYDKRDEDAL 830
R+ RK + PF S A I +D +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLIN-------KDLV 444
Query: 831 SDKLIEFDAEE-----------SEIQAFYK-VVEEPCPM-------WVKGMNGLTAMYVA 871
+ + F+A++ S+++ + E W
Sbjct: 445 KNN-VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET----------- 492
Query: 872 VGLGIMRTVYQNTSNIVDMVPG------DLV--------VNILLAAAWDV 907
T ++I+D PG L V +++A D+
Sbjct: 493 -------TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 55.1 bits (132), Expect = 2e-07
Identities = 88/596 (14%), Positives = 181/596 (30%), Gaps = 216/596 (36%)
Query: 689 SFWGCARSREKCSHDRGVRVCRNHPVGETIADNRHQQNLHPLSRQEYIFSDTGCFFSINL 748
SF+ ++ +E+ + P AD+ P + E + F
Sbjct: 26 SFFIASQLQEQFNKIL------PEPTEGFAADDE------PTTPAELVGK-----F---- 64
Query: 749 HSLCMIEKKVQPNINTTLPYSVALTVSTNTSDKT-MGNNSVH---GSL------KRRRKK 798
L + V+P+ + L + + + N +H L + K
Sbjct: 65 --LGYVSSLVEPS--KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 799 SI-------EEITDDPFKSEENAP------------------Q-TILDFYDK-RD----- 826
+ + PF + N+ Q D++++ RD
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 827 ----EDAL---SDKLIEFDAEESEIQAFY-------KVVEEP---------------CPM 857
D + ++ L E + + + + +E P CP+
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 858 WVKGMNGLTAM--YVAV----GL--GIMRTVYQNTSNIVDMVPGDLVVNILLAAA--WD- 906
G+ + YV G G +R+ + + LV + +A W+
Sbjct: 241 -----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS----QGLVTAVAIAETDSWES 291
Query: 907 ----VARRVKKLDTI-TRSDQNVEAKLIDPNNNVEEESIKKLDVNYEINHGNYDTTN--H 959
V + + L I R + PN ++ ++ + + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAY------PNTSLPPSILED-----SLENNEGVPSPMLS 340
Query: 960 VNYIKQNIKEKFIDKYNNNVPDTDDSFKMSTQTQNLADSVISNQSVSNKSNGEHSDRIYH 1019
++ + Q + +++K N+++P A + +S NG + +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLP---------------AGKQV---EISLV-NG---AK--N 376
Query: 1020 MVSCVE-NPIAL-GKSTELTIYYSNQAKEGCEKSLWCIHHNPTGKKWLYFTYFYLYNLLP 1077
+V V P +L G + L +A G ++S P ++ L F+ + LP
Sbjct: 377 LV--VSGPPQSLYGLNLTLR---KAKAPSGLDQS-----RIPFSERKLKFSNRF----LP 422
Query: 1078 TLV-FFVFLEKLSGKKAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKL--FNTLNSK 1134
F S L+ + + N S N +++ ++T +
Sbjct: 423 VASPFH------S----HLLVPASDLINKDLVKNNVSFNA------KDIQIPVYDTFDGS 466
Query: 1135 D-RKMFGFSMKKVSWLFFHLNLHRSLSKYAIHVPV----TKKLYVTKHRYMLIADF 1185
D R + G ++ + I +PV T + T H I DF
Sbjct: 467 DLRVLSG-------------SISERIVDCIIRLPVKWETTTQFKAT-H----ILDF 504
Score = 50.0 bits (119), Expect = 5e-06
Identities = 94/641 (14%), Positives = 198/641 (30%), Gaps = 215/641 (33%)
Query: 15 TCKHNSI---------LWVAKDFFADDAFDRLRKENANFTERIVVLTADLQSDGLGLDEK 65
T H S+ + F A +L+++ F + + T +D DE
Sbjct: 10 TLSHGSLEHVLLVPTASF----FIAS----QLQEQ---FNKILPEPTEGFAAD----DEP 54
Query: 66 EKK---VLREDVNIVF--HVAATV------KFDE-------HFQTAF----EINCKGTEK 103
V + F +V++ V +FD+ F+ + +I+ +
Sbjct: 55 TTPAELVGK------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK- 107
Query: 104 LLKMAEEMKNLDSFIYVSTAYSNCNI-KKIEEKFYEP-LYTHIEMEQI-----------I 150
L + + + + + + K+ +K L+ +
Sbjct: 108 -LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 151 NSCSHTELTVLNDI---LIKPMPNTYTLSKNACEQMVREKMDK---LPLGI--------- 195
+ EL L L+ + S +++R +D G+
Sbjct: 167 DDY-FEELRDLYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 196 -VRPS----IVMPVVEEPCPMWVKGMNGLTAM--YVAV----GL--GIMRTVYQNTSNIV 242
P + +P+ CP+ G+ + YV G G +R+ + +
Sbjct: 223 SNTPDKDYLLSIPI---SCPL-----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 243 DMVPGDLVVNILLAAA--WD-----VARRVKKLDTI-TRSDQNVEAKLIDPNNNVEEESI 294
LV + +A W+ V + + L I R + PN ++ +
Sbjct: 275 ----QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY------PNTSLPPSIL 324
Query: 295 KKLDVNYEINHGNYDTTN--HVNYIKQNIKEKFIDKYNNNVPDTDDSFKMSTQTQNLADS 352
+ + + + ++ + Q + +++K N+++P A
Sbjct: 325 ED-----SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP---------------AGK 364
Query: 353 VISNQSVSNKSNGEHSDRIYHMVSCVE-NPIAL-GKSTELTIYYSNQAKEGCEKSLWCIH 410
+ +S NG + ++V V P +L G + L +A G ++S
Sbjct: 365 QV---EISLV-NG---AK--NLV--VSGPPQSLYGLNLTLR---KAKAPSGLDQS----- 405
Query: 411 HNPTGKKWLYFTYFYLYNLLPTLV-FFVFLEKLSGKKAQLMKIYRKVFFLNTTIANFSIN 469
P ++ L F+ + LP F S L+ + + N S N
Sbjct: 406 RIPFSERKLKFSNRF----LPVASPFH------S----HLLVPASDLINKDLVKNNVSFN 451
Query: 470 EWSFTNDNALKL--FNTLNSKD-RKMFGFSMKKVSWLFFHLNLH--RSLSKYAIHVPDLT 524
+++ ++T + D R + G +++ L + + A H+ D
Sbjct: 452 A------KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-- 503
Query: 525 KSRLRDFFADDAFDLLRKENVNFTERIVVLTADLQSDGLGL 565
F + VLT + DG G+
Sbjct: 504 ------------FGPGG------ASGLGVLTHRNK-DGTGV 525
Score = 35.8 bits (82), Expect = 0.10
Identities = 41/276 (14%), Positives = 84/276 (30%), Gaps = 92/276 (33%)
Query: 474 TNDNALKLFNTLNSKDRKMFGFSMKKV-----SWLFFHLNLHRS------LSKYAIHVPD 522
T+ A ++N ++ + +GFS+ + L H + S
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 523 LTKSRLRDFFADDAFDLLR------KENVNFTE----RIVV----LTADLQSDG------ 562
K + F + K ++ T+ + + DL+S G
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 563 ------LGLDE------KAKEVLR-ED-VNIVFH----VAATVKFDEHFQTAF------- 597
LG E A +V+ E V +VF+ + V DE ++ +
Sbjct: 1758 TFAGHSLG--EYAALASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 598 -EINCKGT-EKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQIINS 655
+ + E L + E + ++ V N N +E +Q +
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWL-VEIV--NYN---------------VENQQYV-- 1854
Query: 656 CS-HTE-LTVLNDIL-------IK--PMPNTYTLSK 680
+ L + ++L I + + +L +
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 31.2 bits (70), Expect = 2.6
Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 61/138 (44%)
Query: 155 HTEL------TVLND-----ILIKP----MP--NTYTLSKNACEQMVREKMDKLPLGIVR 197
H+ L + D + +P +T+ + +R +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSD-----LRVLSGSIS----- 476
Query: 198 PSIVMPVVEEPCPMWVKGMNGLTAMYVAVGLGIMRTVYQNTSNIVDMVPG------DLV- 250
IV ++ P W T ++I+D PG L
Sbjct: 477 ERIVDCIIRLPV-KWET------------------TTQFKATHILDFGPGGASGLGVLTH 517
Query: 251 -------VNILLAAAWDV 261
V +++A D+
Sbjct: 518 RNKDGTGVRVIVAGTLDI 535
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 43.9 bits (104), Expect = 2e-04
Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 79/293 (26%)
Query: 33 AFDRLRKENANFTERIVVLTADLQSDGLGLDEK--EKKVLREDVNIVFHVAA--TVKFDE 88
A D ++++ +T D+ + ++ V + ++ +FH+A + K ++
Sbjct: 30 ASDIVQRDTGGIK----FITLDV------SNRDEIDRAVEKYSIDAIFHLAGILSAKGEK 79
Query: 89 HFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA---YSNCNIKKIEEKFYEPLYTHIE 145
A+++N GT +L+ A++ ++ + ST K+
Sbjct: 80 DPALAYKVNMNGTYNILEAAKQ-HRVEKVVIPSTIGVFGPETPKNKVP------------ 126
Query: 146 MEQIINSCSHTELTVLNDILIKPMPNT-YTLSKNACEQMVREKMDK--LPLGIVRPSIVM 202
+T+ P T + ++K A E + + +K L + +R ++
Sbjct: 127 -----------SITITR-------PRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGII 168
Query: 203 PVVEEPCPMWVKGMNGLTAMYVAVGLGIMR--------TVYQNTSNIVDMV-PGDLVVNI 253
EP T Y I Y + + M+ D + +
Sbjct: 169 SYKAEP--------TAGTTDYAV---EIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 254 LLAAAWDVARRVKKLDTITRSDQNVEAKLIDPNNNVEEESIKKLDVNYEINHG 306
+ D + R+ NV A P+ + IK+ +EI +
Sbjct: 218 VDLYEADRD------KLVLRNGYNVTAYTFTPSELYSK--IKERIPEFEIEYK 262
Score = 39.2 bits (92), Expect = 0.006
Identities = 20/105 (19%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 527 RLRDFFADD---AFDLLRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHV 583
L + + A D+++++ I +T D+ S+ +D ++ ++ +FH+
Sbjct: 18 YLAEKYGKKNVIASDIVQRDT----GGIKFITLDV-SNRDEIDRAVEK---YSIDAIFHL 69
Query: 584 AA--TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
A + K ++ A+++N GT +L+ A++ ++ + ST
Sbjct: 70 AGILSAKGEKDPALAYKVNMNGTYNILEAAKQ-HRVEKVVIPSTI 113
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 41.9 bits (99), Expect = 9e-04
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 38/140 (27%)
Query: 62 LDEKEKKVLREDVNIVFHVAA---TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFI 118
L + DV +FH A T ++D + + N + +++LL ++ F+
Sbjct: 104 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYC--LEREIPFL 159
Query: 119 YVSTA--YSNCNIKKIEEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLS 176
Y S+A Y IE KP+ N + S
Sbjct: 160 YASSAATYGGRTSDFIES----------------------------REYEKPL-NVFGYS 190
Query: 177 KNACEQMVREKMDKLPLGIV 196
K ++ VR+ + + IV
Sbjct: 191 KFLFDEYVRQILPEANSQIV 210
Score = 35.3 bits (82), Expect = 0.11
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 565 LDEKAKEVLREDVNIVFHVAA---TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFI 621
L + DV +FH A T ++D + + N + +++LL ++ F+
Sbjct: 104 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYC--LEREIPFL 159
Query: 622 YVSTA 626
Y S+A
Sbjct: 160 YASSA 164
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 41.0 bits (97), Expect = 0.001
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 38/140 (27%)
Query: 62 LDEKEKKVLREDVNIVFHVAA---TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFI 118
L + DV +FH A T ++D + + N + +++LL E + F+
Sbjct: 57 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLERE--IPFL 112
Query: 119 YVSTA--YSNCNIKKIEEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLS 176
Y S+A Y IE KP+ N Y S
Sbjct: 113 YASSAATYGGRTSDFIES----------------------------REYEKPL-NVYGYS 143
Query: 177 KNACEQMVREKMDKLPLGIV 196
K ++ VR+ + + IV
Sbjct: 144 KFLFDEYVRQILPEANSQIV 163
Score = 34.1 bits (79), Expect = 0.26
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 565 LDEKAKEVLREDVNIVFHVAA---TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFI 621
L + DV +FH A T ++D + + N + +++LL E + F+
Sbjct: 57 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLERE--IPFL 112
Query: 622 YVSTA 626
Y S+A
Sbjct: 113 YASSA 117
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 41.2 bits (97), Expect = 0.002
Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 34/174 (19%)
Query: 32 DAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAA---TVKFDE 88
D K N + + D+ L+++ + VFH+A
Sbjct: 64 DNLLSAEKINVPDHPAVRFSETSIT------DDALLASLQDEYDYVFHLATYHGNQSSIH 117
Query: 89 HFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQ 148
E N T KL + + K L +Y + E + + +
Sbjct: 118 DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG----------CSIAEKTFDDAKATE 167
Query: 149 IINSCSHTELTVLNDILIKPM-PNTYTLSKNACEQMVR--EKMDKLPLGIVRPS 199
L P Y++SK E K +LP R
Sbjct: 168 ----------ETDIVSLHNNDSP--YSMSKIFGEFYSVYYHKQHQLPTVRARFQ 209
Score = 39.6 bits (93), Expect = 0.005
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 541 RKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA---TVKFDEHFQTAF 597
K NV + + D+ L+++ + VFH+A
Sbjct: 70 EKINVPDHPAVRFSETSIT------DDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH 123
Query: 598 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
E N T KL + + K L +Y +
Sbjct: 124 ENNTLTTLKLYERLKHFKRLKKVVYSAAG 152
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.8 bits (92), Expect = 0.002
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 793 KRRRKKSIEEITDDPFKSE----ENAPQTILDFYDKRDEDALSDKLIEFDAEESEIQAFY 848
+ ++K ++E+ E E A + + ++ ++ E +K + + AFY
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV--EKNKINNRIADK--AFY 146
Query: 849 KVVEE 853
+ +
Sbjct: 147 QQPDA 151
Score = 30.1 bits (67), Expect = 2.7
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 794 RRRKKSIEEITDDPFKSEENAPQTILDFYDKRDEDAL 830
+R+ + +E+ + +++ FY + D D +
Sbjct: 125 QRQSEQVEKNKINNRIADK-------AFYQQPDADII 154
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 39.6 bits (93), Expect = 0.005
Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 41/172 (23%)
Query: 27 DFFADDAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAA---- 82
F ++ F R + + ++ ++ + + +++ + + +FH AA
Sbjct: 44 KFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDT 103
Query: 83 TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA--YSNCNIKKIEEKFYEPL 140
T+ + + + N + LL++A K IY S+A Y N + K P
Sbjct: 104 TM---LNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKAPNVVGKNESPE 158
Query: 141 YTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVREKMDKLP 192
N Y SK ++ V +
Sbjct: 159 ------------------------------NVYGFSKLCMDEFVLSHSNDNV 180
Score = 36.5 bits (85), Expect = 0.046
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 530 DFFADDAFDLLRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA---- 585
F ++ F R ++ + ++ ++ + + + + + + +FH AA
Sbjct: 44 KFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDT 103
Query: 586 TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA--YSNCNIKKIEEKFYEPL 643
T+ + + + N + LL++A K IY S+A Y N + K P
Sbjct: 104 TM---LNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKAPNVVGKNESPE 158
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 38.5 bits (90), Expect = 0.012
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 37 LRKENANFTERIVVLTADLQSDGLGLDEKEKKVLRE-DVNIVFHVAA-----TVKFDEHF 90
+R D+ S E + + + + V +++A + K
Sbjct: 80 IRSSFGYINGDFQTFALDIGSI-----EYDAFIKADGQYDYVLNLSALKHVRSEKDPFTL 134
Query: 91 QTAFEINCKGTEKLLKMAEEMKNLDSFIYVST 122
++N T+K ++ + + + VST
Sbjct: 135 MRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST 165
Score = 36.6 bits (85), Expect = 0.045
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 540 LRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLRE-DVNIVFHVAA-----TVKFDEHF 593
+R D+ S E + + + V +++A + K
Sbjct: 80 IRSSFGYINGDFQTFALDIGSI-----EYDAFIKADGQYDYVLNLSALKHVRSEKDPFTL 134
Query: 594 QTAFEINCKGTEKLLKMAEEMKNLDSFIYVST 625
++N T+K ++ + + + VST
Sbjct: 135 MRMIDVNVFNTDKTIQQSIDA-GAKKYFCVST 165
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 38.1 bits (89), Expect = 0.015
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 39/160 (24%)
Query: 33 AFDRLRKEN-ANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAA--TVKFDEH 89
D + E A F+ + ADL S ++ ++ +++FH+AA + + +
Sbjct: 50 LIDVFQPEAPAGFSGAVDARAADL-SAPGEAEK----LVEARPDVIFHLAAIVSGEAELD 104
Query: 90 FQTAFEINCKGTEKLLKMAEEMKNLDS----FIYVSTAYSNCNIKKIEEKFYEPLYTHIE 145
F + IN GT L D ++ S+ F PL I
Sbjct: 105 FDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV----------FGAPLPYPI- 153
Query: 146 MEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVR 185
+ P+ +Y K CE ++
Sbjct: 154 ----------PDEFHTT-----PL-TSYGTQKAICELLLS 177
Score = 35.1 bits (81), Expect = 0.13
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 536 AFDLLRKEN-VNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA--TVKFDEH 592
D+ + E F+ + ADL + G A++++ +++FH+AA + + +
Sbjct: 50 LIDVFQPEAPAGFSGAVDARAADLSAPGE-----AEKLVEARPDVIFHLAAIVSGEAELD 104
Query: 593 FQTAFEINCKGTEKLLKMAEEMKNLDS----FIYVSTA 626
F + IN GT L D ++ S+
Sbjct: 105 FDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSI 142
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 37.9 bits (89), Expect = 0.015
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 541 RKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATVKFDE---HFQTAF 597
+E VN E ++ ADL + K+ L + V+H+AA + +
Sbjct: 37 NEEFVN--EAARLVKADL------AADDIKDYL-KGAEEVWHIAANPDVRIGAENPDEIY 87
Query: 598 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
N T +LL+ + + ++ ST+
Sbjct: 88 RNNVLATYRLLEAMRK-AGVSRIVFTSTS 115
Score = 32.5 bits (75), Expect = 0.88
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 38 RKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVKFDE---HFQTAF 94
+E N E ++ ADL + K L + V+H+AA + +
Sbjct: 37 NEEFVN--EAARLVKADL------AADDIKDYL-KGAEEVWHIAANPDVRIGAENPDEIY 87
Query: 95 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 123
N T +LL+ + + ++ ST+
Sbjct: 88 RNNVLATYRLLEAMRK-AGVSRIVFTSTS 115
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 35.6 bits (83), Expect = 0.082
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 566 DEKAKEVLR--EDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYV 623
D ++++ DV+ V H+AAT F N T+ L E N+ + +Y
Sbjct: 50 DYTLEDLINQLNDVDAVVHLAATRGSQGKISE-FHDNEILTQNLYDACYE-NNISNIVYA 107
Query: 624 STA 626
ST
Sbjct: 108 STI 110
Score = 35.2 bits (82), Expect = 0.11
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 72 EDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA 123
DV+ V H+AAT F N T+ L E N+ + +Y ST
Sbjct: 61 NDVDAVVHLAATRGSQGKISE-FHDNEILTQNLYDACYE-NNISNIVYASTI 110
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 35.2 bits (82), Expect = 0.084
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 37 LRKENANFTERIVVLTADLQSDGLGLD----EKEKKVLRE-DVNIVFHVAATVKFD---E 88
L + + E I V + G LD + + + + +++ + AA D
Sbjct: 16 LSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEI 75
Query: 89 HFQTAFEINCKGTEKLLKMAEEMKNLDS-FIYVSTAY 124
+ A++IN + + K +DS +++ST Y
Sbjct: 76 EKEKAYKINAEAVRHI---VRAGKVIDSYIVHISTDY 109
Score = 34.9 bits (81), Expect = 0.12
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 540 LRKENVNFTERIVVLTADLQSDGLGLD----EKAKEVLRE-DVNIVFHVAATVKFD---E 591
L + E I V + G LD + ++ + + +++ + AA D
Sbjct: 16 LSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEI 75
Query: 592 HFQTAFEINCKGTEKLLKMAEEMKNLDS-FIYVSTAY 627
+ A++IN + + K +DS +++ST Y
Sbjct: 76 EKEKAYKINAEAVRHI---VRAGKVIDSYIVHISTDY 109
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 35.1 bits (81), Expect = 0.12
Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 28/198 (14%)
Query: 31 DDAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLRE-DVNIVFHVAA------T 83
DR+ + A + I + D+ D L E + + + V H +
Sbjct: 62 ASIHDRISRWKALTGKSIELYVGDI-CDFEFLAE----SFKSFEPDSVVHFGEQRSAPYS 116
Query: 84 VKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTH 143
+ N GT +L +E + + T ++ P +
Sbjct: 117 MIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM----------GEYGTP---N 163
Query: 144 IEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVR--EKMDKLPLGIVRPSIV 201
I++E+ + +H T + + Y LSK + K + + +V
Sbjct: 164 IDIEEGYITITHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 222
Query: 202 MPVVEEPCPMWVKGMNGL 219
V + M + N L
Sbjct: 223 YGVKTDETEMHEELRNRL 240
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 34.4 bits (80), Expect = 0.20
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 541 RKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATV---KFDEHFQTAF 597
R+E VN + DL D ++ DV VFH AA F
Sbjct: 37 RREFVN--PSAELHVRDL------KDYSWGAGIKGDV--VFHFAANPEVRLSTTEPIVHF 86
Query: 598 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
N T +L+ A + + + ++ S++
Sbjct: 87 NENVVATFNVLEWARQ-TGVRTVVFASSS 114
Score = 29.8 bits (68), Expect = 5.0
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 38 RKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATV---KFDEHFQTAF 94
R+E N + DL+ ++VFH AA F
Sbjct: 37 RREFVN--PSAELHVRDLKDYSW--------GAGIKGDVVFHFAANPEVRLSTTEPIVHF 86
Query: 95 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 123
N T +L+ A + + + ++ S++
Sbjct: 87 NENVVATFNVLEWARQ-TGVRTVVFASSS 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.22
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 7/27 (25%)
Query: 128 NIKKIEE--KFYEP-----LYTHIEME 147
+KK++ K Y L ME
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.22
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 7/27 (25%)
Query: 631 NIKKIEE--KFYEP-----LYTHIEME 650
+KK++ K Y L ME
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.35
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 12/27 (44%)
Query: 496 SMKKVSWLFFHLNLHRSLSKYAIHVPD 522
++KK L SL YA D
Sbjct: 21 ALKK---------LQASLKLYA---DD 35
Score = 30.7 bits (68), Expect = 1.6
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 290 EEESIKKLDVNYEINHGNY--DTTNHVNYIKQNIK 322
E++++KKL + ++ Y D+ + IK ++
Sbjct: 18 EKQALKKLQASLKL----YADDSAPALA-IKATME 47
Score = 30.7 bits (68), Expect = 1.6
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 936 EEESIKKLDVNYEINHGNY--DTTNHVNYIKQNIK 968
E++++KKL + ++ Y D+ + IK ++
Sbjct: 18 EKQALKKLQASLKL----YADDSAPALA-IKATME 47
Score = 30.3 bits (67), Expect = 2.2
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 318 KQNIK--EKFIDKYNNNVPDTDDSFKMSTQTQ 347
KQ +K + + Y D+ + + +
Sbjct: 19 KQALKKLQASLKLY---ADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.2
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 964 KQNIK--EKFIDKYNNNVPDTDDSFKMSTQTQ 993
KQ +K + + Y D+ + + +
Sbjct: 19 KQALKKLQASLKLY---ADDSAPALAIKATME 47
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 34.2 bits (79), Expect = 0.23
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 66 EKKVLREDVNIVFHVAA--TVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA 123
E V + ++ +AA + +++ A+++N +L +A+ K + + S+
Sbjct: 61 EHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKA-KKIKKIFWPSSI 119
Score = 34.2 bits (79), Expect = 0.23
Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 540 LRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA--TVKFDEHFQTAF 597
+RK N + + D ++ + + ++ +AA + +++ A+
Sbjct: 36 IRKLNTDVVNSGPFEVVNA-LDFNQIEHLVEV---HKITDIYLMAALLSATAEKNPAFAW 91
Query: 598 EINCKGTEKLLKMAEEMKNLDSFIYVSTA 626
++N +L +A+ K + + S+
Sbjct: 92 DLNMNSLFHVLNLAKA-KKIKKIFWPSSI 119
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 34.1 bits (79), Expect = 0.24
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 66 EKKVLREDVNIVFHVAATVKFD---EHFQTAFEINCKGTEKLLKMAEEMKNLDS-FIYVS 121
+ +++ H AA + D A ++N + L A+E + + IY+S
Sbjct: 53 HHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL---AKEAAAVGAFLIYIS 109
Query: 122 TAY 124
+ Y
Sbjct: 110 SDY 112
Score = 33.8 bits (78), Expect = 0.33
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 566 DEKA-KEVLRE-DVNIVFHVAATVKFD---EHFQTAFEINCKGTEKLLKMAEEMKNLDS- 619
D A ++ + +++ H AA + D A ++N + L A+E + +
Sbjct: 48 DSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL---AKEAAAVGAF 104
Query: 620 FIYVSTAY 627
IY+S+ Y
Sbjct: 105 LIYISSDY 112
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 34.1 bits (79), Expect = 0.26
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 541 RKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATVKFDEHFQTAFEIN 600
R+E++ + + + +D +++ ++ + D V H AA+ K + + N
Sbjct: 58 RREHLKDHPNLTFVEGSI-ADHALVNQLIGDL-QPDA--VVHTAASYKDPDDWYNDTLTN 113
Query: 601 CKGTEKLLKMAEEMKNLDSFIYVSTA 626
C G +++ A++ N+ F+Y TA
Sbjct: 114 CVGGSNVVQAAKK-NNVGRFVYFQTA 138
Score = 30.7 bits (70), Expect = 2.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 71 REDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTA 123
+ V H AA+ K + + NC G +++ A++ N+ F+Y TA
Sbjct: 87 DLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKK-NNVGRFVYFQTA 138
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 34.1 bits (78), Expect = 0.27
Identities = 13/121 (10%), Positives = 31/121 (25%), Gaps = 16/121 (13%)
Query: 35 DRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVKFDEHFQTAF 94
L + + Q+ L+ + + H+A + EH +
Sbjct: 18 ADLTSTTDH-----HIFEVHRQTKEEELES-----ALLKADFIVHLAGVNRP-EHDKEFS 66
Query: 95 EINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNI-----KKIEEKFYEPLYTHIEMEQI 149
N + +L + + + S+ + + K E+
Sbjct: 67 LGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVY 126
Query: 150 I 150
I
Sbjct: 127 I 127
Score = 33.0 bits (75), Expect = 0.65
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 566 DEKAKEVLREDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVST 625
E+ E + + H+A + EH + N + +L + + + S+
Sbjct: 36 KEEELESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS 94
Query: 626 AYSNCNI-----KKIEEKFYEPLYTHIEMEQII 653
+ + K E+ I
Sbjct: 95 IQATQDNPYGESKLQGEQLLREYAEEYGNTVYI 127
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 33.8 bits (78), Expect = 0.28
Identities = 26/158 (16%), Positives = 46/158 (29%), Gaps = 46/158 (29%)
Query: 33 AFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVKFDEHFQT 92
D + A E IV DL D + L +D + + H+ V + +
Sbjct: 31 LSDIVDLGAAEAHEEIVA--CDL------ADAQAVHDLVKDCDGIIHLGG-VSVERPWND 81
Query: 93 AFEINCKGTEKLLKMAEEMKNLD--SFIYVSTA---YSNCNIKKIEEKFYEPLYTHIEME 147
+ N G L E +NL ++ S+ +I+
Sbjct: 82 ILQANIIGAYNLY---EAARNLGKPRIVFASSNHTIGYYPRTTRIDT------------- 125
Query: 148 QIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVR 185
++ +P + Y LSK E +
Sbjct: 126 ---------------EVPRRPD-SLYGLSKCFGEDLAS 147
Score = 33.8 bits (78), Expect = 0.28
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 526 SRLRDFFADD-----AFDLLRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIV 580
S +R D++ E IV DL D +A L +D + +
Sbjct: 16 SAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVA--CDL------ADAQAVHDLVKDCDGI 67
Query: 581 FHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLD--SFIYVSTA 626
H+ V + + + N G L E +NL ++ S+
Sbjct: 68 IHLGG-VSVERPWNDILQANIIGAYNLY---EAARNLGKPRIVFASSN 111
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 32.5 bits (75), Expect = 0.78
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 66 EKKVLREDVNIVFHVAATVKFD---EHFQTAFEINCKGTEKLLKMAEEMKNLDS-FIYVS 121
++ V +I+ H AA K D + A+ IN G + A + + + +Y+S
Sbjct: 49 QQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNV---AVASQLVGAKLVYIS 105
Query: 122 TAY 124
T Y
Sbjct: 106 TDY 108
Score = 31.7 bits (73), Expect = 1.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 572 VLREDVNIVFHVAATVKFD---EHFQTAFEINCKGTEKLLKMAEEMKNLDS-FIYVSTAY 627
V +I+ H AA K D + A+ IN G + A + + + +Y+ST Y
Sbjct: 52 VQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNV---AVASQLVGAKLVYISTDY 108
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 31.9 bits (73), Expect = 1.2
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 23/119 (19%)
Query: 761 NINTTLPYS--VALTVSTNTSDKTMGNNSVHGSLKRRRKKSIEEITDDPFKSEENAPQTI 818
++ TL +S A NT DK +V G ++ ++
Sbjct: 208 DVTLTLAFSTVEAHIRLCNTMDKCR-RLAVFGE-----AGTL---------VMDDRATDK 252
Query: 819 LDFYDKRDEDALSDKLIEFDAEE------SEIQAFYKVVEEPCPMWVKGMNGLTAMYVA 871
L + + + ++ F V +P P GL + V
Sbjct: 253 LTLHPPQPDGNWPVGQGHALTVTDEMPLTRAVRLFAGAVRQPEPGPSPLELGLRVVRVL 311
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 20/137 (14%)
Query: 549 ERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLL 608
E + V AD+ + + + V + ++ K ++
Sbjct: 46 EHLKVKKADV------SSLDEVCEVCKGADAVISAFNPGWNNPDI---YDETIKVYLTII 96
Query: 609 KMAEEMKNLDSFIYVSTAYSNCN--------IKKIEEKFYEPLYTHIEMEQ-IINSCSHT 659
++ ++ F+ V A S ++ E + E +
Sbjct: 97 DGVKKAG-VNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEI 155
Query: 660 ELTVLND-ILIKPMPNT 675
+ + ++P T
Sbjct: 156 DWVFFSPAADMRPGVRT 172
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 29.9 bits (68), Expect = 5.2
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 566 DEKAKEVLREDVNIVFHVAATVKFD---EHFQTAFEINCKGTEKLLKMAEEMKNLDSFIY 622
+ V+ V H AA T+ N G +L A + + SF Y
Sbjct: 92 NLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD-AKVQSFTY 150
Query: 623 VSTA 626
+++
Sbjct: 151 AASS 154
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 29.5 bits (67), Expect = 6.6
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 542 KENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATVKFD 590
+ + + ADL +G DE K VFHVA + F+
Sbjct: 49 LDLPKAETHLTLWKADLADEG-SFDEAIK-----GCTGVFHVATPMDFE 91
Score = 29.1 bits (66), Expect = 9.6
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 39 KENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVKFD 87
+ + + ADL +G DE + + VFHVA + F+
Sbjct: 49 LDLPKAETHLTLWKADLADEG-SFDE----AI-KGCTGVFHVATPMDFE 91
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain
4, transcription, regulation, helix-turn-helix; 2.60A
{Escherichia coli}
Length = 158
Score = 28.7 bits (64), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 816 QTILDFYDKRDEDALS-DKLIEFDAEESEI 844
Q I+D+YD E A+ D +EF S+I
Sbjct: 101 QQIMDYYDSSLETAIDHDNYLEFQQVLSDI 130
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 29.2 bits (66), Expect = 8.3
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 549 ERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLL 608
+ D+ G DE K V H+A+ V F + GT L
Sbjct: 62 RFETAVVEDMLKQG-AYDEVIK-----GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNAL 115
Query: 609 KMAEEMKNLDSFIYVS 624
+ A ++ F+ S
Sbjct: 116 RAAAATPSVKRFVLTS 131
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A
2rq1_A
Length = 296
Score = 29.2 bits (65), Expect = 8.5
Identities = 16/86 (18%), Positives = 34/86 (39%)
Query: 1089 SGKKAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKLFNTLNSKDRKMFGFSMKKVSW 1148
SG++ + + KV L+ T+ + + + D ++ LN + FG ++ +
Sbjct: 9 SGRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNAT 68
Query: 1149 LFFHLNLHRSLSKYAIHVPVTKKLYV 1174
L+ + + K VP V
Sbjct: 69 SKTWLDSAKEIKKQVRGVPWNFTFNV 94
Score = 29.2 bits (65), Expect = 9.7
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 443 SGKKAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKLFNTLNSKDRKMFGFSMKKVSW 502
SG++ + + KV L+ T+ + + + D ++ LN + FG ++ +
Sbjct: 9 SGRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNAT 68
Query: 503 LFFHLNLHRSLSKYAIHVPDLTKSRLRDFFADDAFDL 539
L+ + + K VP ++ F+ D L
Sbjct: 69 SKTWLDSAKEIKKQVRGVPWNFTFNVK-FYPPDPAQL 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,271,796
Number of extensions: 1119393
Number of successful extensions: 2520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2475
Number of HSP's successfully gapped: 92
Length of query: 1217
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1113
Effective length of database: 3,798,009
Effective search space: 4227184017
Effective search space used: 4227184017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)