RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13944
(1217 letters)
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 39.7 bits (92), Expect = 0.002
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 30/149 (20%)
Query: 66 EKKVLREDVNIVFHVAATVKFDEHFQ---TAFEINCKGTEKLLKMAEEM--------KNL 114
+ + + V H+AA D E N GT LL++A + KN
Sbjct: 66 TRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNN 125
Query: 115 DSFIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYT 174
F ++ST + Y L E+E + TE T + Y+
Sbjct: 126 FRFHHISTD-----------EVYGDLPHPDEVENSVTLPLFTETTAYAPS------SPYS 168
Query: 175 LSKNACEQMVRE--KMDKLPLGIVRPSIV 201
SK + + +VR + LP + S
Sbjct: 169 ASKASSDHLVRAWRRTYGLPTIVTNCSNN 197
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 37.1 bits (85), Expect = 0.011
Identities = 23/181 (12%), Positives = 52/181 (28%), Gaps = 36/181 (19%)
Query: 27 DFFADDAFDRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATVKF 86
F + D + ++ + + DL SD L ++V ++V + ++
Sbjct: 36 SSFNTERVDHIYQDPHTCNPKFHLHYGDL-SDTSNLTRILREVQPDEVYNLGAMSHVAVS 94
Query: 87 DEHFQTAFEINCKGTEKLLKMAEE--MKNLDSFIYVSTA--YSNCNIKKIEEKFYEPLYT 142
E + +++ GT +LL+ ++ F ST+ Y +E P Y
Sbjct: 95 FESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT--PFYP 152
Query: 143 HIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVRE--KMDKLPLGIVRPSI 200
+ Y ++K + + +
Sbjct: 153 R---------------------------SPYAVAKLYAYWITVNYRESYGMYACNGILFN 185
Query: 201 V 201
Sbjct: 186 H 186
Score = 35.6 bits (81), Expect = 0.036
Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 10/143 (6%)
Query: 526 SRLRDFFADDAFDLLRKENVNFTERIVVLTADLQSDGLGLDEKAKEVLREDVNIVFHVAA 585
R F + D + ++ + + DL SD L +EV ++V + ++
Sbjct: 32 KRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL-SDTSNLTRILREVQPDEVYNLGAMSH 90
Query: 586 TVKFDEHFQTAFEINCKGTEKLLKMAEE--MKNLDSFIYVSTA--YSNCNIKKIEEKF-Y 640
E + +++ GT +LL+ ++ F ST+ Y +E +
Sbjct: 91 VAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF 150
Query: 641 EPL----YTHIEMEQIINSCSHT 659
P + I + +
Sbjct: 151 YPRSPYAVAKLYAYWITVNYRES 173
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 34.5 bits (78), Expect = 0.060
Identities = 26/280 (9%), Positives = 76/280 (27%), Gaps = 39/280 (13%)
Query: 35 DRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHVAATV----KFDEHF 90
+L + + +VL + + L E ++ V+ AA V + +
Sbjct: 20 RQLEQRG----DVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYP 75
Query: 91 QTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQII 150
N ++ A + +++ +++ ++ + K E L +E
Sbjct: 76 ADFIYQNMMIESNIIHAAHQ-NDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLE----- 129
Query: 151 NSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVRE--KMDKLPLGIVRPSIV------M 202
P Y ++K A ++ + V P+ +
Sbjct: 130 -----------------PTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNF 172
Query: 203 PVVEEPCPMWVKGMNGLTAMYVAVGLGIMRTVYQNTSNIVDMVPGDLVVNILLAAAWDVA 262
+ A + + + + ++++ A
Sbjct: 173 HPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWL 232
Query: 263 RRVKKLDTITRSDQNVEAKLIDPNNNVEEESIKKLDVNYE 302
+ + + V+ + + + + K V ++
Sbjct: 233 ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFD 272
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 34.6 bits (79), Expect = 0.065
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 565 LDEKAKEVLREDVNIVFHVAATVKFDEHFQ---TAFEINCKGTEKLLKMAEEMKNLDSFI 621
++ E L +V+ ++H+A+ + + N GT +L +A+ + +
Sbjct: 54 INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLL 111
Query: 622 YVSTA--YSNCNIKKIEEKFY 640
ST+ Y + + E ++
Sbjct: 112 LASTSEVYGDPEVHPQSEDYW 132
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 31.8 bits (71), Expect = 0.53
Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 13/181 (7%)
Query: 35 DRLRKENANFTERIVVLTADLQSDGLGLDEKEKKVLREDVNIVFHV-AATVKFDEHFQTA 93
RL+ E V+ + +++ + D + D+ ++ + T D F A
Sbjct: 33 RRLKHEGHY-----VIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87
Query: 94 FEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKKIEEKFYEPLYTHIEMEQIINSC 153
++ G + N + A IK+ F+ I E
Sbjct: 88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR----FFYASSACIYPEFKQLET 143
Query: 154 SHTELTVLNDILIKPMPNTYTLSKNACEQMVRE--KMDKLPLGIVRPSIVMPVVEEPCPM 211
++ L + +P + + L K A E++ + K + I R +
Sbjct: 144 TNVSLKESDAWPAEPQ-DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGG 202
Query: 212 W 212
Sbjct: 203 R 203
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 30.3 bits (68), Expect = 0.77
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 431 PTLVFFVFLEKLSGKKAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKLFNTLNSKDR 490
P + F +K +L+++YR V +L+ ++ N + ++ N A+ L LN+
Sbjct: 54 PNMTDFPSFHGNGTEKTKLVELYRMVAYLSASLTNITRDQKVL-NPTAVSLQVKLNATID 112
Query: 491 KMFG 494
M G
Sbjct: 113 VMRG 116
Score = 30.3 bits (68), Expect = 0.77
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 1077 PTLVFFVFLEKLSGKKAQLMKIYRKVFFLNTTIANFSINEWSFTNDNALKLFNTLNSKDR 1136
P + F +K +L+++YR V +L+ ++ N + ++ N A+ L LN+
Sbjct: 54 PNMTDFPSFHGNGTEKTKLVELYRMVAYLSASLTNITRDQKVL-NPTAVSLQVKLNATID 112
Query: 1137 KMFG 1140
M G
Sbjct: 113 VMRG 116
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 28.6 bits (63), Expect = 5.0
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 30/132 (22%)
Query: 72 EDVNIVFHVAATVKFDEHFQTAFEINCKGTEKLLKMAEEMKNLDSFIYVSTAYSNCNIKK 131
+ + + + E N +GT+ LL+ A + + ++VST +I
Sbjct: 78 DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD-AGVGRVVHVSTNQVYGSIDS 136
Query: 132 IEEKFYEPLYTHIEMEQIINSCSHTELTVLNDILIKPMPNTYTLSKNACEQMVRE--KMD 189
PL + + Y SK + + R +
Sbjct: 137 GSWTESSPLEPN---------------------------SPYAASKAGSDLVARAYHRTY 169
Query: 190 KLPLGIVRPSIV 201
L + I R
Sbjct: 170 GLDVRITRCCNN 181
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 26.7 bits (58), Expect = 5.4
Identities = 12/63 (19%), Positives = 15/63 (23%), Gaps = 1/63 (1%)
Query: 691 WGCARSREKCSH-DRGVRVCRNHPVGETIADNRHQQNLHPLSRQEYIFSDTGCFFSINLH 749
R KC R V C + + + E F DT C
Sbjct: 12 KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCI 71
Query: 750 SLC 752
C
Sbjct: 72 IAC 74
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 27.4 bits (61), Expect = 8.2
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 271 ITRSDQNVEAKLIDPNNNVEEESIKKLD------VNYEINHG----NYDTTNHVNYIKQN 320
++R++ N++ LI N + E + + V+ +NH ++ + YIK
Sbjct: 36 VSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDY 95
Query: 321 IKEKFIDKYNNNVPDTDDSFK 341
+K K P+ F
Sbjct: 96 MK-SIKGKLEEQRPERVKPFM 115
Score = 27.4 bits (61), Expect = 8.2
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 917 ITRSDQNVEAKLIDPNNNVEEESIKKLD------VNYEINHG----NYDTTNHVNYIKQN 966
++R++ N++ LI N + E + + V+ +NH ++ + YIK
Sbjct: 36 VSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDY 95
Query: 967 IKEKFIDKYNNNVPDTDDSFK 987
+K K P+ F
Sbjct: 96 MK-SIKGKLEEQRPERVKPFM 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.397
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,513,676
Number of extensions: 219784
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 28
Length of query: 1217
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1121
Effective length of database: 1,089,516
Effective search space: 1221347436
Effective search space used: 1221347436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)