BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13945
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
++R +AV G +I+ G++ L+D TG L +++GHE + + +G ++S
Sbjct: 186 VVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE 244
Query: 61 DQTISAWHTNDGSLKCNIQGP 81
D+T+ W +GSLK I P
Sbjct: 245 DRTVRIWSKENGSLKQVITLP 265
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 39 GHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV 85
GH+G + L + DG +IS S D+T W +GSL N+Q V
Sbjct: 102 GHQGNVCSL-SFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASV 145
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSS 59
+ + +SS G + G G L L DL TGT+ + GH ++L + ++D+ ++S S
Sbjct: 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 60 LDQTISAWHT 69
D+TI W+T
Sbjct: 148 RDKTIKLWNT 157
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQT 63
+ +SS G + G G L L DL TGT+ + GH ++L + ++D+ ++S S D+T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 64 ISAWHT 69
I W+T
Sbjct: 129 IKLWNT 134
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
+ C +S ++A G G + +++L +S GH+ + + TAD TLISSS
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 61 DQTISAWH 68
D I W+
Sbjct: 1031 DSVIQVWN 1038
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQTIS 65
S G IA A L + TG L K HE E+L ++DD + + S D+ +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 66 AWHTNDGSL 74
W + G L
Sbjct: 690 IWDSATGKL 698
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
+ C +S ++A G G + +++L +S GH+ + + TAD TLISSS
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 61 DQTISAWH 68
D I W+
Sbjct: 1024 DSVIQVWN 1031
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQTIS 65
S G IA A L + TG L K HE E+L ++DD + + S D+ +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 66 AWHTNDGSL 74
W + G L
Sbjct: 683 IWDSATGKL 691
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQT 63
+ +SS G + G G L L DL G S + GH ++L + + D+ ++S+S D+T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 64 ISAWHT 69
I W+T
Sbjct: 496 IKLWNT 501
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS 36
+ +AVS GS A G GV+ L DL G L S
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 54 TLISSSLDQTISAWHTNDGSLKCNIQGPT 82
T++S+S D+T+ W+ ++ L+ + G T
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
+ C +S +IA G +G + +L+L S H+ + + TAD+ TLISSS
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 61 DQTISAWH 68
D I W+
Sbjct: 1030 DAEIQVWN 1037
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTISA 66
S G IA A L + TG L K HE E+L + DD + + S+D+ +
Sbjct: 630 SEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKI 689
Query: 67 WHTNDGSL 74
W++ G L
Sbjct: 690 WNSMTGEL 697
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 32 TSLASWKGHEGEILQLVTADDGT-LISSSLDQTISAWHT 69
+ +A +GH + ++ + DG+ ++SS DQTI W T
Sbjct: 879 SKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQ 62
C A+SSS W L L DLRTGT+ + GH+ E+ + + D+ ++S+ ++
Sbjct: 89 CFAISSS--W------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 63 TISAWH 68
I W+
Sbjct: 141 EIKLWN 146
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSS 59
I IA S G ++A G G++ + D+ TG L + +GH I L + D L+++S
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 60 LDQTISAWHTNDGSLKCNIQG 80
D I + +L + G
Sbjct: 226 DDGYIKIYDVQHANLAGTLSG 246
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
+ +++ +G I + + +++TG + ++ GH + + DGTLI+S S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 61 DQTISAW 67
DQT+ W
Sbjct: 255 DQTVRVW 261
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSL 60
++ I+ SG +A A + L D + + + GH+ + + +G ++S+S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 61 DQTISAWHTNDG 72
D+TI W G
Sbjct: 213 DKTIKMWEVQTG 224
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 2 IRCIAVSS-SGSWIAIGQASGVLTLLDLRTG-------TSLASWKGHEGEILQLVTADDG 53
+ +AVS G +IA G + + D TG + S GH+ + +V DG
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 54 -TLISSSLDQTISAWHTNDGSLKCNIQGPT 82
+++S SLD+++ W+ + + K + + P
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
I + SG + G + + DLRTG + +G V+ DG I++ SL
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 61 DQTISAWHTNDGSL 74
D+ + W + G L
Sbjct: 228 DRAVRVWDSETGFL 241
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSLDQTIS 65
VS G+ + G L + D+ L GH I + + IS+S+D TI
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 66 AWHTNDGSLKCNIQGPTEPV 85
W +G L +QG T V
Sbjct: 336 IWDLENGELMYTLQGHTALV 355
Score = 30.8 bits (68), Expect = 0.17, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 12 SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTND 71
+++ G ++ + D L GH+G + L A G L+S S D+T+ W
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 72 G 72
G
Sbjct: 193 G 193
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQ 62
RCI+ S + + + DL G + + +GH ++ L+ D L+S++ D
Sbjct: 324 RCISASMDTT----------IRIWDLENGELMYTLQGHTA-LVGLLRLSDKFLVSAAADG 372
Query: 63 TISAWHTNDGSLK 75
+I W ND S K
Sbjct: 373 SIRGWDANDYSRK 385
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 11 GSWIAIGQASGVLTLLDLRTGTSLASW---------KGHEG------EILQLVTADDGTL 55
G ++ G + GV+ L DL + + + + H E +Q D G
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 56 ISSSLDQTISAWHTN 70
SSS D+T+ W TN
Sbjct: 116 TSSSFDKTLKVWDTN 130
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 7 VSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL--VTADDGTLISSSLDQTI 64
VS+ +A+G + L DL++G+ +GH EIL + D L ++S D +
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 65 SAW 67
W
Sbjct: 212 KLW 214
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 17 GQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAW 67
G A L + T +A KGH +L L + DG T+ S++ D+T+ W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 17 GQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAW 67
G A L + T +A KGH +L L + DG T+ S++ D+T+ W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSL 60
+I C+ + ++ G + + D L GH+G + L A G L+S S
Sbjct: 124 VITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 181
Query: 61 DQTISAWHTNDG 72
D+T+ W G
Sbjct: 182 DRTVRVWDIKKG 193
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQ 62
RCI+ S + + + DL G + +GH ++ L+ D L+S++ D
Sbjct: 324 RCISASXDTT----------IRIWDLENGELXYTLQGHTA-LVGLLRLSDKFLVSAAADG 372
Query: 63 TISAWHTNDGSLK 75
+I W ND S K
Sbjct: 373 SIRGWDANDYSRK 385
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 17 GQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAW 67
G A L + T +A KGH +L L + DG T+ S++ D+T+ W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
+R +A S G IA + L + R G L + GH + + + DD T+ S+S
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 61 DQTISAWHTN 70
D+T+ W+ N
Sbjct: 447 DKTVKLWNRN 456
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
+R +A S G IA + L + R G L + GH + + + DG I+S S
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528
Query: 61 DQTISAWHTN 70
D+T+ W+ N
Sbjct: 529 DKTVKLWNRN 538
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
+R +A S G IA + L + R G L + GH + + + DG I+S S
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 61 DQTISAWHTN 70
D+T+ W+ N
Sbjct: 78 DKTVKLWNRN 87
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
+R +A S G IA + L + R G L + GH + + + DG I+S S
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159
Query: 61 DQTISAWHTN 70
D+T+ W+ N
Sbjct: 160 DKTVKLWNRN 169
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSL 60
+R +A S G IA + L + R G L + GH + + + DG T+ S+S
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Query: 61 DQTISAWH 68
D+T+ W+
Sbjct: 570 DKTVKLWN 577
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SL 60
+R +A S G IA + L + R G L + GH + + DG I+S S
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Query: 61 DQTISAWHTN 70
D+T+ W+ N
Sbjct: 283 DKTVKLWNRN 292
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISS-SLDQT 63
+A S G IA + L + R G L + GH + + + DG I+S S D+T
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 64 ISAWHTN 70
+ W+ N
Sbjct: 368 VKLWNRN 374
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYV 116
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 105 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 165 YDGLCRIWDTASGQCLKTLIDDDNPPV 191
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYV 106
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 108 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 168 YDGLCRIWDTASGQCLKTLIDDDNPPV 194
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYV 109
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 186 YDGLCRIWDTASGQCLKTLIDDDNPPV 212
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYV 127
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYV 116
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPV 195
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYV 110
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPV 195
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYV 110
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYV 113
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 170 YDGLCRIWDTASGQCLKTLIDDDNPPV 196
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYV 111
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 193 YDGLCRIWDTASGQCLKTLIDDDNPPV 219
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 61 DQTISAWHTNDGSLKCNIQG 80
D+T+ W + G ++G
Sbjct: 110 DKTLKIWDVSSGKCLKTLKG 129
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 191 YDGLCRIWDTASGQCLKTLIDDDNPPV 217
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 61 DQTISAWHTNDGSLKCNIQG 80
D+T+ W + G ++G
Sbjct: 108 DKTLKIWDVSSGKCLKTLKG 127
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQ 62
R ++ G + G + + D+ TG + + GH+ + + D L+S + D
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELKDNILVSGNADS 339
Query: 63 TISAWHTNDGSLKCNIQGPTE 83
T+ W G +QGP +
Sbjct: 340 TVKIWDIKTGQCLQTLQGPNK 360
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTN 70
G+ I G L + TG L + GH G + D +IS S D+T+ W+
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAE 187
Query: 71 DGSLKCNIQGPTEPV 85
G + G T V
Sbjct: 188 TGECIHTLYGHTSTV 202
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYV 113
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 174 YDGLCRIWDTASGQCLKTLIDDDNPPV 200
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYV 115
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYV 113
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYV 116
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYV 113
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLI-SSS 59
+ C + + I G + + D++TG L + H + + DG+LI SSS
Sbjct: 112 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Query: 60 LDQTISAWHTNDGS-LKCNIQGPTEPV 85
D W T G LK I PV
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLV-TADDGTLISSSL 60
+ + S +G W+A A ++ + G + GH+ I + ++D L+S+S
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 61 DQTISAWHTNDGSLKCNIQGPTEPV 85
D+T+ W + G ++G + V
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYV 113
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWK--GHEGEILQLVTADDGTLISSSLD 61
A + SG+++A G + ++ +L+T G S + GH G + DD +++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 62 QTISAW 67
T + W
Sbjct: 164 TTCALW 169
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWK--GHEGEILQLVTADDGTLISSSLD 61
A + SG+++A G + ++ +L+T G S + GH G + DD +++SS D
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 174
Query: 62 QTISAW 67
T + W
Sbjct: 175 TTCALW 180
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWK--GHEGEILQLVTADDGTLISSSLD 61
A + SG+++A G + ++ +L+T G S + GH G + DD +++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 62 QTISAW 67
T + W
Sbjct: 164 TTCALW 169
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWK--GHEGEILQLVTADDGTLISSSLD 61
A + SG+++A G + ++ +L+T G S + GH G + DD +++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 62 QTISAW 67
T + W
Sbjct: 164 TTCALW 169
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRT--GTSLASWK--GHEGEILQLVTADDGTLISSSLD 61
A + SG+++A G + ++ +L+T G S + GH G + DD +++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 62 QTISAW 67
T + W
Sbjct: 164 TTCALW 169
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 8 SSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSLDQTISA 66
S SG + G + + D+ G+ ++ GHE + L + DGT S S D T+
Sbjct: 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Query: 67 W 67
W
Sbjct: 353 W 353
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEI 44
+ + S GS++++G +G++ + D+ + T L + GH+ +
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV 179
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 16 IGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAWHTNDGS 73
+G G + +LD + H EI +L G LISSS D + W DGS
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 169
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 16 IGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAWHTNDGS 73
+G G + +LD + H EI +L G LISSS D + W DGS
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172
>pdb|3C2U|A Chain A, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|B Chain B, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|C Chain C, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
pdb|3C2U|D Chain D, Structure Of The Two Subsite D-Xylosidase From Selenomonas
Ruminantium In Complex With 1,3-Bis[tris(Hydroxymethyl)
Methylamino]propane
Length = 538
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 18 QASGVLTLLDLRTGTSL-ASWKGHEGEILQLVTADDGTL 55
Q +G+ + +S+ +W +G I+ LVTAD+GT
Sbjct: 407 QMAGLTCYYNTENWSSIHVTWNEEKGRIIDLVTADNGTF 445
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 1 LIRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-------GHEGEILQLVTADDG 53
+ + + GS A G + L + GT ++ H G + L + DG
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 54 TLI-SSSLDQTISAWH 68
T I S+S D+TI W+
Sbjct: 252 TKIASASADKTIKIWN 267
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 39 GHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSL 74
GH G +L L D+ +I+ S D T+ W N G +
Sbjct: 171 GHTGSVLCL-QYDERVIITGSSDSTVRVWDVNTGEM 205
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 39 GHEGEILQLVTADDGTLISSSLDQTISAWHT 69
GH + +V DD ++S+S D+TI W+T
Sbjct: 254 GHRAAV-NVVDFDDKYIVSASGDRTIKVWNT 283
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
Length = 319
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 47 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 47 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
Length = 319
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 47 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 41 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 91
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 47 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 23 LTLLDLRTGTSLASWKGHEGEILQ--LVTADDGTLISSSLDQTISAWHTNDG 72
LT D + G + S+KGH I+Q +TAD +S+S D+T+ W G
Sbjct: 47 LTGDDQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 2 IRCIAVSSS--GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSS 59
+ C+ S S I G ++ + DL TG + KGH + + + DG+L +SS
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV--TADDGTLISS 58
IR IAV + ++ G + L + +L +++GHE ++ + D T S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 59 SLDQTISAW 67
LD+T+ W
Sbjct: 160 CLDRTVKVW 168
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV--TADDGTLISS 58
IR IAV + ++ G + L + +L +++GHE ++ + D T S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 59 SLDQTISAW 67
LD+T+ W
Sbjct: 160 CLDRTVKVW 168
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV--TADDGTLISS 58
IR IAV + ++ G + L + +L +++GHE ++ + D T S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 59 SLDQTISAW 67
LD+T+ W
Sbjct: 160 CLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSL-ASWKGHEGEILQLV--TADDGTLISS 58
IR IAV + ++ G + L + +L +++GHE ++ + D T S
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 59 SLDQTISAW 67
LD+T+ W
Sbjct: 160 CLDRTVKVW 168
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 14 IAIGQASGVLTLLDLRTGTSLAS-WKGHEGEI--LQLVTADDGTLISSSLDQTISAW 67
+A G G+L++ D+R GT S K HE E+ + ++ L + S D ++ W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,667
Number of Sequences: 62578
Number of extensions: 87197
Number of successful extensions: 388
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 160
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)