RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13945
(86 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 51.3 bits (121), Expect = 8e-10
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSL 60
I ++ S SG + G + D GH+ + L DDG + + S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 61 DQTISAWH 68
D + W+
Sbjct: 333 DSFLKIWN 340
Score = 35.1 bits (79), Expect = 4e-04
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTL--LDLRTGTSLASWKGHEGEILQLVTADDG-TLISS 58
I I +G+ A G L L S I + + G L++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 59 SLDQTISAWHTNDGSLKCNIQGPTEPV 85
D + W + G V
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRV 315
Score = 32.0 bits (71), Expect = 0.004
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSL 60
+ ++++ G L D+R G ++ GHE +I + +G + S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 61 DQTISAWH 68
D T +
Sbjct: 247 DATCRLFD 254
Score = 29.7 bits (65), Expect = 0.028
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 38 KGHEGEILQLVTADDG-TLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
+GH +I + D L+S+S D + W + + I + V
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Score = 28.9 bits (63), Expect = 0.066
Identities = 8/70 (11%), Positives = 20/70 (28%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLD 61
I + + + G L + D T + + ++ A G ++
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117
Query: 62 QTISAWHTND 71
I + +
Sbjct: 118 DNICSIYNLK 127
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 46.7 bits (109), Expect = 3e-08
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSL 60
+R + S G +I L + D + + + HE + L +++ S+
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 61 DQTISAW 67
DQT+ W
Sbjct: 310 DQTVKVW 316
Score = 41.7 bits (96), Expect = 2e-06
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT-LISSSLDQ 62
G ++ G + + D+ TG L + GH+ + ++ G ++S + D+
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 63 TISAWHTNDGSLKCNIQGPTEPV 85
T+ W + + V
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFV 292
Score = 35.9 bits (81), Expect = 2e-04
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 30 TGTSLASWKGHEGEILQLVTADDGT-LISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
+ GH + +++ + ++S+S D TI W G + ++G T+ V
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Score = 35.9 bits (81), Expect = 2e-04
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL 47
+ + S + + + D TG + KGH + +
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 45.9 bits (107), Expect = 7e-08
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTA-------DDGT 54
+ +A + + +I G + D ++G L +GH ++ + A +
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 55 LISSSLDQTISAW 67
+ S D W
Sbjct: 371 FATGSGDCKARIW 383
Score = 29.0 bits (63), Expect = 0.052
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLD 61
+ C+ S+ G ++A G + + + G+ +A + + SS L
Sbjct: 65 VCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 62 QTISAWHTND 71
+ +
Sbjct: 124 IRSVCFSPDG 133
Score = 29.0 bits (63), Expect = 0.056
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 32 TSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPV 85
L H + + ++DG +++ ++T + +DGSL + +
Sbjct: 53 VELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN 106
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 45.2 bits (105), Expect = 1e-07
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTS--LASWKGHEGEILQLVTADDGT-LISS 58
I C A + + IAI + + + + + K H G++ + A D +++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 59 SLDQTISAWHTNDGSLKCN 77
D+ W + K
Sbjct: 70 GTDRNAYVWTLKGRTWKPT 88
Score = 25.2 bits (53), Expect = 1.1
Identities = 7/73 (9%), Positives = 17/73 (23%), Gaps = 5/73 (6%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG-----TLISSSL 60
+ + Q + H+ + Q+ G ++ +
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349
Query: 61 DQTISAWHTNDGS 73
D +S W
Sbjct: 350 DGGMSIWDVRSLE 362
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 42.2 bits (97), Expect = 1e-06
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTIS 65
+ +++ G ++ + D L GH+G + L A G L+S S D+T+
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 66 AWHTNDGSLKCNIQGPTEPVH 86
W G +G V
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVR 98
Score = 39.1 bits (89), Expect = 1e-05
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 35 ASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
+ +GH ++ + +D +I+ + D+ I + + + + G V
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW 57
Score = 34.9 bits (78), Expect = 5e-04
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLAS-WKGHEGEILQLVTADDGTLISSSL 60
+ I I + + + +LR+G + + +I + + +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343
Query: 61 DQTISAW 67
D
Sbjct: 344 DGQSFLE 350
Score = 27.2 bits (58), Expect = 0.27
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 51 DDGTLISSSLDQTISAWHTNDGS-LKCNIQGPTEPV 85
++ S + + ++ G + NI + +
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 41.0 bits (94), Expect = 3e-06
Identities = 13/60 (21%), Positives = 21/60 (35%)
Query: 27 DLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
S KGH+ ++ + ++S S D T+ W G + G T V
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Score = 32.1 bits (71), Expect = 0.005
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADD 52
+ G+ I G L + TG L + GH G + D+
Sbjct: 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Score = 26.7 bits (57), Expect = 0.35
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 12 SWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTND 71
+ G ++ + D T T L + +GH + + D ++S SLD +I W
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQFDGIHVVSGSLDTSIRVWDVET 206
Query: 72 GSLKCNIQGPTEPV 85
G+ + G
Sbjct: 207 GNCIHTLTGHQSLT 220
Score = 24.8 bits (52), Expect = 1.6
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-----GHEGEILQLVTADDGTLISS 58
+ + +++ G + L DL+TG + + G G + ++ ++ + +
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 40.6 bits (93), Expect = 5e-06
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQ 62
+ + G W +L G S+ +L ++ DD +++ S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328
Query: 63 TISAW 67
+ +
Sbjct: 329 KATVY 333
Score = 30.5 bits (67), Expect = 0.016
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 6/90 (6%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTG-----TSLASWKGHEGEILQLVTADDGTLI 56
+ + +S+ + G G + + D+ S + I DG +
Sbjct: 54 VCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112
Query: 57 SSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
+ + + T
Sbjct: 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAP 142
Score = 27.9 bits (60), Expect = 0.13
Identities = 3/48 (6%), Positives = 12/48 (25%)
Query: 39 GHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
H + + ++ + + + W + K +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR 96
Score = 24.4 bits (51), Expect = 2.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 51 DDGTLISSSLDQTISAWHTNDGSL 74
+S+ D ++AW T G+
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGAS 299
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 39.6 bits (90), Expect = 1e-05
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTS-LASWKGHEGEILQLVTADDGTLISSSLD 61
+A G + + ++ + + H+ + L+ TL+SS D
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 62 QTISAWH 68
I W+
Sbjct: 279 ACIKRWN 285
Score = 26.8 bits (57), Expect = 0.28
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 34 LASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDG 72
L + GH I L LIS S D I W ++
Sbjct: 6 LKTISGHNKGITALTVN---PLISGSYDGRIMEWSSSSM 41
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 38.0 bits (86), Expect = 4e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 11 GSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTA----DDGTLISSSLDQTISA 66
A A + + D+ T + W + ++ +G +IS SLD T++
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 67 W 67
+
Sbjct: 323 Y 323
Score = 25.3 bits (53), Expect = 1.2
Identities = 5/36 (13%), Positives = 8/36 (22%)
Query: 51 DDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
D + D TI W + +
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 36.9 bits (83), Expect = 8e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASW-KGHEGEILQLVTADDGTLISSSL 60
I ++ S+ G + A G + D+ TG S + H I + T G L + S
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW 74
Query: 61 DQTISAWHTNDGSLKCNIQ 79
D + + +
Sbjct: 75 DDHLKVVPAGGSGVDSSKA 93
Score = 31.1 bits (68), Expect = 0.012
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 31 GTSLASWKGHEGEILQLVTADDG-TLISSSLDQTISAWHTNDGSLKCNIQG 80
G+ GH I L ++ DG TL S+ + I++W + G
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 52
Score = 30.7 bits (67), Expect = 0.014
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 13 WIAIGQASGVLTLLDLRTGTSLASWK---GHEGEILQLVTADDGTLISSSLDQTISAW 67
+A G + + ++ + + ++ ++ T++S+ D I W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 36.0 bits (81), Expect = 2e-04
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL--VTADDGTLISSSLD 61
+ S G+ IA A + + ++ T + Q + L+S S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 62 QTISAWH 68
I+ +
Sbjct: 303 GFINFVN 309
Score = 27.2 bits (58), Expect = 0.23
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 51 DDGTLISSSLDQTISAWHTNDGSLKCNIQGPTE 83
D + S+S D+TI W+ ++ I T
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 35.5 bits (80), Expect = 3e-04
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 5 IAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWK-GHEGEILQLVTADDGT--LISSSLD 61
A+ + ++ + L ++D+ + T S + + A D + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 62 QTISAWHTNDGSLKCNIQGPTEPVH 86
I + + + P
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGE 86
Score = 32.8 bits (73), Expect = 0.003
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEI 44
C+A G + +G L + + T + + K G++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Score = 28.2 bits (61), Expect = 0.095
Identities = 7/64 (10%), Positives = 16/64 (25%)
Query: 18 QASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCN 77
L DL+ + + L ++ ++ + N
Sbjct: 269 GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328
Query: 78 IQGP 81
I+ P
Sbjct: 329 IKLP 332
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 31.3 bits (69), Expect = 0.008
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 2 IRCIAVSSSGSW--IAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDG 53
I I VS A+ L + D +G L S + TAD G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.4 bits (69), Expect = 0.008
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEIL 45
+ I G + + D T GH G +L
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Score = 31.4 bits (69), Expect = 0.008
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 13 WIAIGQASGVLTLLDLRTGTS---------LASWKGHEGEILQLVTADDGTLISSSLDQT 63
I G G + + DL L + H G + + + D+ ++SSS D T
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR-LQFDEFQIVSSSHDDT 288
Query: 64 ISAW 67
I W
Sbjct: 289 ILIW 292
Score = 30.2 bits (66), Expect = 0.018
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 48 VTADDGTLISSSLDQTISAWHTNDGSLKCNIQGPTEPVH 86
+ DD ++S D TI W N K + G T V
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 31.0 bits (68), Expect = 0.012
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGT---SLASWKGHEGEILQLVTADDG 53
I I + S S + I G LT+ L ++ +L D+
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Score = 28.3 bits (61), Expect = 0.10
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHE----------GEILQLVTADD 52
I S ++ + G+++ +L+T + ++ IL L T+DD
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314
Query: 53 GTLISSSLDQTIS 65
++++DQTI
Sbjct: 315 TFKTNAAIDQTIE 327
Score = 26.7 bits (57), Expect = 0.32
Identities = 4/42 (9%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 38 KGHEGEILQLVTADDGT-LISSSLDQTISAWHTNDGSLKCNI 78
+ + I + + L+ +S D +++ + + + ++
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 30.6 bits (67), Expect = 0.013
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 17 GQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGT--LISSSLDQTISAWHTNDGSL 74
S ++++D+ + A+ + V + DGT ++++ +S T ++
Sbjct: 8 NSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 75 KCNIQ 79
+
Sbjct: 67 IATVP 71
Score = 26.0 bits (55), Expect = 0.54
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 28 LRTGTSLASWKGHEGEILQLVTADDGT--LISSSLDQTISAWHTNDGSLKCNIQGPTEP 84
T A + + DG ++ S T+S T ++ + P
Sbjct: 231 TGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 30.5 bits (67), Expect = 0.014
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 4 CIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQL-VTADDGTLISSSLDQ 62
+ + + + A VL DL S+ + V+ D T+
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 63 TISAWHTNDGSLKCNIQGPTEPV 85
++A+ K + P
Sbjct: 302 DLAAYDAETLEKKGQVDLPGNAS 324
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 29.4 bits (64), Expect = 0.040
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 2 IRCIAVSSSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTA----DDGTLIS 57
+ ++ + SG + G L D++T + + H +I + G ++
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
Query: 58 SS 59
Sbjct: 352 EP 353
Score = 29.1 bits (63), Expect = 0.061
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 32 TSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDGSLKCNIQ 79
+ + K H+ +I V+A + +S S D + W +
Sbjct: 5 ATANAGKAHDADIFS-VSACNSFTVSCSGDGYLKVWDNKLLDNENPKD 51
Score = 23.3 bits (48), Expect = 6.4
Identities = 9/94 (9%), Positives = 24/94 (25%), Gaps = 14/94 (14%)
Query: 6 AVSSSGSWIAIGQASGVLTLLDLRTG------TSLASWKGHEGEILQLVTADDG------ 53
+VS+ S+ G L + D + S H+ + +
Sbjct: 19 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 54 --TLISSSLDQTISAWHTNDGSLKCNIQGPTEPV 85
+ ++S + + + +
Sbjct: 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112
>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR),
alpha (variable) chain {Synechocystis sp. [TaxId:
1143]}
Length = 73
Score = 28.1 bits (63), Expect = 0.045
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 38 KGHEGEILQLVTADDGTLISSSL 60
+G EGE+ ++T G IS++L
Sbjct: 29 QGMEGEVAAVLTEWQGRPISANL 51
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 25.3 bits (54), Expect = 0.98
Identities = 9/56 (16%), Positives = 18/56 (32%)
Query: 17 GQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDG 72
G L +D +G + K H ++ + + + D A+ G
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 24.9 bits (53), Expect = 1.8
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 18 QASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWHTNDG 72
+ G + DL TG + + + G + ++LD + A DG
Sbjct: 441 KEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495
>d1nbwa1 c.8.6.1 (A:92-256) Swiveling domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 165
Score = 23.5 bits (51), Expect = 3.7
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 42 GEILQLVTADDGTLISSSLDQTI 64
IL+ DDG L+++ L +T+
Sbjct: 71 AAILK---KDDGVLVNNRLRKTL 90
>d2d0oa1 c.8.6.1 (A:93-254) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 162
Score = 23.5 bits (51), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 42 GEILQLVTADDGTLISSSLDQTI 64
G ILQ DDG L+S+ L++ +
Sbjct: 68 GVILQ---RDDGVLVSNRLEKPL 87
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens)
[TaxId: 9606]}
Length = 253
Score = 23.6 bits (49), Expect = 4.5
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 3 RCIAVSSSGSWIAIGQASGVLTLLDLRTGTS 33
+ ++ + + + V + +R G +
Sbjct: 203 NILFLTDVTREASAAEEADVHVAVVVRPGNA 233
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 23.4 bits (49), Expect = 4.8
Identities = 8/66 (12%), Positives = 17/66 (25%)
Query: 9 SSGSWIAIGQASGVLTLLDLRTGTSLASWKGHEGEILQLVTADDGTLISSSLDQTISAWH 68
+ G + + TG + + +LD + A
Sbjct: 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500
Query: 69 TNDGSL 74
++ G L
Sbjct: 501 SDTGDL 506
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.393
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,013
Number of extensions: 9851
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 63
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (21.9 bits)