BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13946
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGD 57
E+ENTP+KRVD+IF MDKN D +LTL+EF+EGSKADP IVQALSL D
Sbjct: 140 EEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYD 187
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGD 57
EDE+TP+KRV+KIF+ MDKN D +LTLEEF EGSK DP IV ALSL D
Sbjct: 140 EDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSLYD 187
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 37/49 (75%)
Query: 9 SEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGD 57
+EDE TP+ RV KIF MDKN D +TL+EFREGSK DP I+ AL+L D
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNLYD 187
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQAL 53
EDE+TP+KR +KIF QMD N D +L+LEEF G+K+DP IV+ L
Sbjct: 140 EDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL 183
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
+DENTP+KR +KI+ KN DD+LT +EF EG+ A+ I++ +
Sbjct: 150 DDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKEILRLIQF 195
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 143 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 188
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 142 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 187
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 142 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 187
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 142 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 187
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 142 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 187
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
EDENTP+KR +KI+ K DD+LT +EF EG+ A+ I++ +
Sbjct: 142 EDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKEILRLIQF 187
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+TP++ VD F +MDKN D +TL+EF E + D I+++L L
Sbjct: 132 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 175
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+TP++ VD F +MDKN D +TL+EF E + D I+++L L
Sbjct: 168 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 211
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+TP++ VD F +MDKN D +TL+EF E + D I+++L L
Sbjct: 132 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQL 175
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+TP++ VD F +MDKN D +TL+EF E + D I+++L L
Sbjct: 135 EDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL 178
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+ P + V++ F++MD+N D +T+EEF E + D I+ ++ L
Sbjct: 52 EDAPAEHVERFFEKMDRNQDGVVTIEEFLEACQKDENIMSSMQL 95
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
TP++ VD+IF +D+N D +L+L EF EG++ D +++ L +
Sbjct: 145 TPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQM 186
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+ P++ V+ F +MDKN D +T++EF E + D I++++ L
Sbjct: 181 EDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQL 224
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
E+ P + V++ F +MD+N D +T++EF E + D I+ ++ L
Sbjct: 208 EDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQL 251
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALS 54
T ++ + +FD++D N D L+LEEF EG + D ++ L+
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILT 168
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 4 GQQPQSEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQAL 53
GQQ S P++ ++ +F ++D N+D LTLEEF G D +++ +
Sbjct: 127 GQQTLS-----PEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIV 171
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 21 KIFDQMDKNHDDRLTLEEFREGSKA-DPRIVQ 51
++F++ DKN D +L+L+EFRE + A P Q
Sbjct: 5 RVFEKFDKNKDGKLSLDEFREVALAFSPYFTQ 36
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 18 RVDKIFDQMDKNHDDRLTLEEFRE 41
R+ FD +DKN D RLT EE +E
Sbjct: 99 RLRTFFDMVDKNADGRLTAEEVKE 122
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 46 LDELFEELDKNGDGEVSFEEFQ 67
>pdb|2BCB|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
pdb|1B1G|A Chain A, Solvated Refinement Of Ca-Loaded Calbindin D9k
Length = 75
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 46 LDELFEELDKNGDGEVSFEEFQ 67
>pdb|1CDN|A Chain A, Solution Structure Of (Cd2+)1-Calbindin D9k Reveals
Details Of The Stepwise Structural Changes Along The
Apo--> (Ca2+) Ii1--> (Ca2+)i,Ii2 Binding Pathway
pdb|1CLB|A Chain A, Determination Of The Solution Structure Of Apo Calbindin
D9k By Nmr Spectroscopy
pdb|2BCA|A Chain A, High-Resolution Solution Structure Of Calcium-Loaded
Calbindin D9k
Length = 76
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 47 LDELFEELDKNGDGEVSFEEFQ 68
>pdb|1KSM|A Chain A, Average Nmr Solution Structure Of Ca Ln Calbindin D9k
pdb|1KQV|A Chain A, Family Of Nmr Solution Structures Of Ca Ln Calbindin D9k
Length = 79
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 50 LDELFEELDKNGDGEVSFEEFQ 71
>pdb|4ICB|A Chain A, Proline Cis-Trans Isomers In Calbindin D9k Observed By
X- Ray Crystallography
Length = 76
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 47 LDELFEELDKNGDGEVSFEEFQ 68
>pdb|1IG5|A Chain A, Bovine Calbindin D9k Binding Mg2+
pdb|1IGV|A Chain A, Bovine Calbindin D9k Binding Mn2+
pdb|3ICB|A Chain A, The Refined Structure Of Vitamin D-Dependent Calcium-
Binding Protein From Bovine Intestine. Molecular
Details, Ion Binding, And Implications For The
Structure Of Other Calcium-Binding Proteins
Length = 75
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 46 LDELFEELDKNGDGEVSFEEFQ 67
>pdb|1N65|A Chain A, Family Of Nmr Solution Structures Of Ca Ce Calbindin D9k
In Denaturating Conditions
Length = 75
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 46 LDELFEELDKNGDGEVSFEEFQ 67
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 16 QKRVDKIFDQMDKNHDDRLTLEEF 39
+K DK+ +D NHD R++ +E+
Sbjct: 55 RKAADKLIQNLDANHDGRISFDEY 78
>pdb|1HT9|A Chain A, Domain Swapping Ef-Hands
pdb|1HT9|B Chain B, Domain Swapping Ef-Hands
Length = 76
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 47 LDELFEELDKNGDGEVSFEEFQ 68
>pdb|1BOC|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 76
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 47 LDELFEELDKNGDGEVSFEEFQ 68
>pdb|1BOD|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 74
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFR 40
+D++F+++DKN D ++ EEF+
Sbjct: 45 LDELFEELDKNGDGEVSFEEFQ 66
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 16 QKRVDKIFDQMDKNHDDRLTLEEF 39
+K DK+ +D NHD R++ +E+
Sbjct: 54 RKAADKLIQNLDANHDGRISFDEY 77
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
+DK F++ D HD ++ EE+R P +++ ++L
Sbjct: 168 IDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 204
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 20 DKIFDQMDKNHDDRLTLEEFREGSKADPRIVQA 52
D +FD +DK+ + +TL+E++ +KA I+Q+
Sbjct: 112 DALFDIVDKDQNGAITLDEWKAYTKA-AGIIQS 143
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 19 VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55
+DK F++ D HD ++ EE+R P +++ ++L
Sbjct: 137 IDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 173
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 20 DKIFDQMDKNHDDRLTLEEFREGSKADPRIVQA 52
D +FD +DK+ + +TL+E++ +KA I+Q+
Sbjct: 112 DALFDIVDKDQNGAITLDEWKAYTKA-AGIIQS 143
>pdb|4GGF|C Chain C, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|L Chain L, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|T Chain T, Crystal Structure Of Mn2+ Bound Calprotectin
pdb|4GGF|V Chain V, Crystal Structure Of Mn2+ Bound Calprotectin
Length = 114
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEF 39
EN +K ++ I + +D N D +L+ EEF
Sbjct: 52 ENKNEKVIEHIMEDLDTNADKQLSFEEF 79
>pdb|1CB1|A Chain A, Three-Dimensional Solution Structure Of Ca2+-Loaded
Porcine Calbindin D9k Determined By Nuclear Magnetic
Resonance Spectroscopy
Length = 78
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 17 KRVDKIFDQMDKNHDDRLTLEEFR 40
+ +D +F ++DKN D ++ EEF+
Sbjct: 47 RTLDDLFQELDKNGDGEVSFEEFQ 70
>pdb|1IRJ|A Chain A, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|B Chain B, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|C Chain C, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|D Chain D, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|E Chain E, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|F Chain F, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|G Chain G, Crystal Structure Of The Mrp14 Complexed With Chaps
pdb|1IRJ|H Chain H, Crystal Structure Of The Mrp14 Complexed With Chaps
Length = 113
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEF 39
EN +K ++ I + +D N D +L+ EEF
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFEEF 78
>pdb|1XK4|C Chain C, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|D Chain D, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|G Chain G, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|H Chain H, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|K Chain K, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
pdb|1XK4|L Chain L, Crystal Structure Of Human Calprotectin(s100a8/s100a9)
Length = 113
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEF 39
EN +K ++ I + +D N D +L+ EEF
Sbjct: 51 ENKNEKVIEHIMEDLDTNADKQLSFEEF 78
>pdb|1VK1|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu-392566-001
Length = 242
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKAD 46
Q +V K+ D+MD+ + L +E +KAD
Sbjct: 158 QXKVSKVLDEMDQAXEIELVYYGLKEDAKAD 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,054,762
Number of Sequences: 62578
Number of extensions: 56380
Number of successful extensions: 251
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 73
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)