Query psy13946
Match_columns 90
No_of_seqs 117 out of 526
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 15:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0044|consensus 99.2 1.8E-11 4E-16 90.3 5.7 55 3-57 133-187 (193)
2 PF00036 EF-hand_1: EF hand; 98.6 2.3E-08 5E-13 53.4 2.0 26 19-44 2-27 (29)
3 PF13499 EF-hand_7: EF-hand do 98.5 7E-08 1.5E-12 57.5 1.7 53 18-70 1-60 (66)
4 PF13202 EF-hand_5: EF hand; P 98.3 3.7E-07 8E-12 47.1 2.4 23 20-42 2-24 (25)
5 KOG0034|consensus 98.1 2.4E-06 5.2E-11 62.7 3.6 44 12-55 142-185 (187)
6 PTZ00183 centrin; Provisional 98.0 1.4E-05 2.9E-10 53.5 5.1 56 15-70 15-73 (158)
7 cd00252 SPARC_EC SPARC_EC; ext 98.0 9.3E-06 2E-10 55.5 3.8 54 16-70 47-100 (116)
8 PF13405 EF-hand_6: EF-hand do 97.9 9.4E-06 2E-10 42.9 2.4 26 19-44 2-27 (31)
9 cd05026 S-100Z S-100Z: S-100Z 97.9 1.1E-05 2.4E-10 52.3 3.2 53 18-70 11-73 (93)
10 cd05025 S-100A1 S-100A1: S-100 97.9 1.1E-05 2.3E-10 51.7 3.0 56 15-70 7-72 (92)
11 PF13833 EF-hand_8: EF-hand do 97.9 1.5E-05 3.3E-10 45.9 3.0 28 17-44 25-52 (54)
12 PF13499 EF-hand_7: EF-hand do 97.9 1.7E-05 3.8E-10 47.0 3.2 31 12-42 35-65 (66)
13 cd00052 EH Eps15 homology doma 97.8 2.1E-05 4.5E-10 46.1 2.9 51 20-70 2-53 (67)
14 KOG0027|consensus 97.8 2.6E-05 5.6E-10 53.7 3.6 55 16-70 43-105 (151)
15 cd00051 EFh EF-hand, calcium b 97.8 1.9E-05 4.2E-10 43.7 2.3 52 19-70 2-56 (63)
16 PTZ00184 calmodulin; Provision 97.7 4.8E-05 1E-09 49.9 4.2 55 16-70 46-104 (149)
17 PTZ00183 centrin; Provisional 97.7 5.1E-05 1.1E-09 50.6 3.8 53 17-69 53-109 (158)
18 cd05031 S-100A10_like S-100A10 97.7 4.1E-05 8.9E-10 49.2 3.2 55 16-70 7-71 (94)
19 smart00027 EH Eps15 homology d 97.7 4.8E-05 1E-09 48.9 3.4 55 16-70 9-64 (96)
20 KOG0027|consensus 97.7 5.1E-05 1.1E-09 52.2 3.6 54 17-70 8-64 (151)
21 cd00213 S-100 S-100: S-100 dom 97.6 0.0001 2.2E-09 46.3 4.0 54 17-70 8-71 (88)
22 cd00252 SPARC_EC SPARC_EC; ext 97.6 7.8E-05 1.7E-09 50.9 3.5 31 15-45 78-108 (116)
23 KOG0037|consensus 97.6 9.8E-05 2.1E-09 56.0 4.1 49 19-70 96-144 (221)
24 PTZ00184 calmodulin; Provision 97.6 9.7E-05 2.1E-09 48.4 3.6 55 15-69 82-139 (149)
25 KOG0044|consensus 97.5 0.0001 2.3E-09 54.5 4.0 56 13-70 60-120 (193)
26 cd05022 S-100A13 S-100A13: S-1 97.5 8.4E-05 1.8E-09 48.5 3.2 53 18-70 9-67 (89)
27 smart00054 EFh EF-hand, calciu 97.5 0.00012 2.6E-09 35.0 2.8 26 19-44 2-27 (29)
28 cd05023 S-100A11 S-100A11: S-1 97.5 0.00012 2.6E-09 47.6 3.4 54 17-70 9-72 (89)
29 cd05029 S-100A6 S-100A6: S-100 97.4 0.00011 2.3E-09 47.6 2.5 51 20-70 13-71 (88)
30 cd05024 S-100A10 S-100A10: A s 97.4 0.00018 3.9E-09 47.8 3.6 27 17-43 48-74 (91)
31 COG5126 FRQ1 Ca2+-binding prot 97.4 0.0002 4.3E-09 51.8 3.8 57 13-69 88-147 (160)
32 cd05026 S-100Z S-100Z: S-100Z 97.4 0.0002 4.3E-09 46.4 3.3 30 15-44 51-80 (93)
33 cd05030 calgranulins Calgranul 97.3 0.00028 6.1E-09 45.2 3.6 31 14-44 48-78 (88)
34 cd05022 S-100A13 S-100A13: S-1 97.3 0.00026 5.6E-09 46.2 3.1 27 17-43 47-73 (89)
35 cd05027 S-100B S-100B: S-100B 97.3 0.00031 6.7E-09 45.4 3.2 53 18-70 9-71 (88)
36 cd05023 S-100A11 S-100A11: S-1 97.2 0.00045 9.8E-09 44.8 3.7 28 16-43 51-78 (89)
37 COG5126 FRQ1 Ca2+-binding prot 97.2 0.00028 6.1E-09 51.0 2.8 38 11-48 122-159 (160)
38 PRK12309 transaldolase/EF-hand 97.2 0.00033 7.2E-09 56.4 3.4 46 15-70 332-377 (391)
39 PLN02964 phosphatidylserine de 97.2 0.00036 7.7E-09 59.5 3.4 53 18-70 180-235 (644)
40 KOG0036|consensus 97.0 0.00086 1.9E-08 55.2 4.3 55 14-70 48-102 (463)
41 cd05029 S-100A6 S-100A6: S-100 97.0 0.00083 1.8E-08 43.4 3.3 29 15-43 49-77 (88)
42 KOG0034|consensus 97.0 0.0011 2.4E-08 48.7 4.2 56 15-70 102-167 (187)
43 cd05027 S-100B S-100B: S-100B 96.9 0.0011 2.5E-08 42.8 3.6 29 16-44 50-78 (88)
44 cd00052 EH Eps15 homology doma 96.9 0.0012 2.6E-08 38.5 3.2 30 15-44 31-60 (67)
45 cd00051 EFh EF-hand, calcium b 96.9 0.0014 3E-08 36.0 3.3 30 14-43 33-62 (63)
46 cd05031 S-100A10_like S-100A10 96.9 0.0012 2.7E-08 42.2 3.4 30 15-44 49-78 (94)
47 KOG4251|consensus 96.8 0.0023 5.1E-08 50.4 4.9 70 1-70 81-160 (362)
48 cd05025 S-100A1 S-100A1: S-100 96.8 0.0014 3E-08 41.8 2.9 29 16-44 51-79 (92)
49 KOG0377|consensus 96.6 0.0021 4.5E-08 54.0 3.2 52 19-70 549-607 (631)
50 cd00213 S-100 S-100: S-100 dom 96.5 0.0034 7.4E-08 39.3 3.5 30 16-45 50-79 (88)
51 KOG4223|consensus 96.3 0.0035 7.6E-08 49.9 2.9 55 16-70 199-261 (325)
52 smart00027 EH Eps15 homology d 96.1 0.007 1.5E-07 38.8 3.3 29 16-44 43-71 (96)
53 PRK12309 transaldolase/EF-hand 96.1 0.0052 1.1E-07 49.6 3.1 26 19-44 359-384 (391)
54 KOG4223|consensus 96.0 0.0082 1.8E-07 47.9 3.6 53 18-70 164-220 (325)
55 PF14788 EF-hand_10: EF hand; 96.0 0.0081 1.8E-07 36.2 2.8 30 15-44 19-48 (51)
56 PF10591 SPARC_Ca_bdg: Secrete 95.9 0.0012 2.5E-08 44.7 -1.2 55 16-70 53-108 (113)
57 cd05030 calgranulins Calgranul 95.8 0.014 3.1E-07 37.3 3.7 53 18-70 9-71 (88)
58 KOG0028|consensus 95.7 0.017 3.6E-07 42.5 4.1 49 19-68 71-124 (172)
59 PF13833 EF-hand_8: EF-hand do 95.7 0.0046 1E-07 35.4 0.9 41 30-70 1-45 (54)
60 KOG0036|consensus 95.4 0.017 3.6E-07 47.8 3.4 56 15-70 80-138 (463)
61 KOG4065|consensus 95.3 0.019 4.1E-07 40.7 3.1 33 10-42 110-142 (144)
62 PF12763 EF-hand_4: Cytoskelet 95.0 0.02 4.3E-07 38.4 2.4 28 16-43 42-69 (104)
63 PF10591 SPARC_Ca_bdg: Secrete 94.7 0.017 3.7E-07 39.0 1.5 28 14-41 85-112 (113)
64 KOG0028|consensus 94.5 0.068 1.5E-06 39.3 4.2 67 16-82 32-103 (172)
65 KOG0041|consensus 94.4 0.04 8.7E-07 42.2 3.0 54 16-69 98-154 (244)
66 KOG0038|consensus 94.3 0.068 1.5E-06 39.3 3.8 37 16-52 148-184 (189)
67 KOG0037|consensus 93.6 0.087 1.9E-06 40.1 3.5 52 16-70 159-210 (221)
68 PLN02964 phosphatidylserine de 93.4 0.085 1.8E-06 45.3 3.4 53 17-70 143-199 (644)
69 KOG0031|consensus 92.8 0.16 3.4E-06 37.4 3.7 27 15-41 30-56 (171)
70 cd05024 S-100A10 S-100A10: A s 90.8 0.32 6.9E-06 32.2 3.2 50 20-70 11-68 (91)
71 PF14658 EF-hand_9: EF-hand do 90.7 0.15 3.2E-06 32.1 1.4 50 21-70 2-56 (66)
72 KOG3555|consensus 90.5 0.22 4.7E-06 40.9 2.5 54 16-70 249-302 (434)
73 PF12763 EF-hand_4: Cytoskelet 88.9 0.38 8.3E-06 32.2 2.4 54 16-70 9-63 (104)
74 KOG2643|consensus 87.6 0.13 2.7E-06 43.0 -0.7 26 18-43 426-451 (489)
75 KOG2643|consensus 85.1 0.43 9.3E-06 40.0 1.1 29 15-43 231-259 (489)
76 KOG4578|consensus 84.6 0.68 1.5E-05 37.9 2.1 30 12-41 365-394 (421)
77 KOG1029|consensus 81.2 0.87 1.9E-05 40.9 1.6 26 16-41 228-253 (1118)
78 KOG0030|consensus 80.0 2.8 6.1E-05 30.4 3.6 46 17-62 11-59 (152)
79 KOG4251|consensus 78.2 1.7 3.7E-05 34.6 2.2 57 14-70 233-301 (362)
80 KOG0751|consensus 78.1 0.93 2E-05 38.9 0.8 48 24-72 81-130 (694)
81 KOG0377|consensus 77.2 2.9 6.2E-05 35.7 3.4 28 17-44 587-614 (631)
82 PF05042 Caleosin: Caleosin re 74.6 2.5 5.5E-05 31.2 2.2 54 16-70 95-158 (174)
83 KOG4004|consensus 74.3 2.2 4.7E-05 32.9 1.8 26 16-41 221-246 (259)
84 KOG0031|consensus 73.5 7.4 0.00016 28.7 4.3 54 13-68 97-155 (171)
85 KOG0041|consensus 72.0 3.7 8.1E-05 31.6 2.6 47 18-65 136-190 (244)
86 KOG0046|consensus 71.2 2.7 6E-05 36.1 1.9 25 17-41 57-81 (627)
87 KOG2562|consensus 70.2 3.1 6.7E-05 35.1 1.9 55 15-69 309-370 (493)
88 PF14658 EF-hand_9: EF-hand do 68.5 8.2 0.00018 24.2 3.2 28 16-43 34-62 (66)
89 KOG4578|consensus 68.3 2.4 5.2E-05 34.8 0.9 55 16-70 331-390 (421)
90 KOG1955|consensus 68.3 4.8 0.0001 34.8 2.7 27 15-41 263-289 (737)
91 PF00404 Dockerin_1: Dockerin 64.9 5.4 0.00012 19.8 1.5 13 27-39 1-13 (21)
92 PF08976 DUF1880: Domain of un 64.9 6.4 0.00014 27.5 2.4 29 16-44 6-34 (118)
93 KOG4347|consensus 64.4 6.5 0.00014 34.4 2.8 30 15-44 553-582 (671)
94 KOG0046|consensus 61.9 9.7 0.00021 32.9 3.4 48 19-70 21-77 (627)
95 KOG4065|consensus 59.6 18 0.00038 25.8 3.9 59 10-68 60-135 (144)
96 PF12174 RST: RCD1-SRO-TAF4 (R 58.0 5.7 0.00012 25.0 1.1 37 18-54 26-65 (70)
97 KOG3555|consensus 56.8 6.8 0.00015 32.4 1.6 47 16-62 281-328 (434)
98 KOG4666|consensus 54.3 9.9 0.00022 31.2 2.1 34 19-52 333-366 (412)
99 KOG3866|consensus 54.2 8.9 0.00019 31.5 1.8 27 19-45 298-324 (442)
100 PF09373 PMBR: Pseudomurein-bi 54.1 8.9 0.00019 20.5 1.3 16 30-45 1-16 (33)
101 PF09279 EF-hand_like: Phospho 53.3 15 0.00033 22.4 2.5 25 19-44 2-26 (83)
102 cd08029 LA_like_fungal La-moti 49.3 23 0.00049 22.5 2.8 45 22-66 23-72 (76)
103 KOG1707|consensus 48.3 21 0.00045 31.1 3.2 29 15-43 313-341 (625)
104 PF05517 p25-alpha: p25-alpha 47.1 17 0.00036 25.5 2.1 29 16-44 40-68 (154)
105 KOG1029|consensus 44.8 21 0.00046 32.5 2.8 28 16-43 48-75 (1118)
106 PF01023 S_100: S-100/ICaBP ty 44.7 23 0.00049 20.1 2.1 25 21-45 10-36 (44)
107 KOG1651|consensus 43.1 11 0.00025 27.7 0.8 64 21-84 102-166 (171)
108 KOG0038|consensus 41.1 47 0.001 24.6 3.8 52 19-70 73-128 (189)
109 KOG0751|consensus 40.2 31 0.00066 30.0 3.0 29 16-44 107-135 (694)
110 PF06226 DUF1007: Protein of u 39.8 34 0.00074 25.0 2.9 26 20-45 53-78 (212)
111 KOG0998|consensus 39.5 18 0.00039 32.2 1.6 54 17-70 283-337 (847)
112 KOG1954|consensus 38.2 26 0.00055 29.7 2.2 26 15-40 475-500 (532)
113 cd02977 ArsC_family Arsenate R 37.1 20 0.00043 22.8 1.2 31 21-51 61-91 (105)
114 PF00427 PBS_linker_poly: Phyc 34.0 50 0.0011 23.2 2.8 19 30-48 41-59 (131)
115 PF09069 EF-hand_3: EF-hand; 33.5 40 0.00087 22.1 2.2 40 15-56 47-86 (90)
116 cd08032 LARP_7 La RNA-binding 33.5 77 0.0017 20.4 3.5 45 21-65 27-77 (82)
117 cd02518 GT2_SpsF SpsF is a gly 32.9 89 0.0019 22.2 4.1 41 11-52 188-230 (233)
118 KOG2562|consensus 32.0 38 0.00083 28.7 2.3 50 19-68 141-192 (493)
119 KOG0040|consensus 30.0 52 0.0011 32.4 3.0 47 20-69 2256-2315(2399)
120 PF09851 SHOCT: Short C-termin 28.6 43 0.00093 17.5 1.4 12 31-42 14-25 (31)
121 PF08006 DUF1700: Protein of u 27.3 24 0.00051 24.9 0.3 40 48-87 21-64 (181)
122 PF08044 DUF1707: Domain of un 27.2 37 0.00081 20.0 1.1 12 30-41 20-31 (53)
123 PF13573 SprB: SprB repeat 27.1 27 0.00059 18.9 0.5 16 62-77 12-27 (37)
124 PF05901 Excalibur: Excalibur 26.8 32 0.0007 18.7 0.7 9 25-33 26-34 (37)
125 KOG4666|consensus 26.7 44 0.00095 27.6 1.8 25 17-41 259-283 (412)
126 KOG0040|consensus 25.6 80 0.0017 31.2 3.4 35 7-41 2285-2320(2399)
127 PF13608 Potyvirid-P3: Protein 24.2 67 0.0015 26.5 2.4 39 16-55 288-327 (445)
128 PF04380 BMFP: Membrane fusoge 23.7 75 0.0016 20.0 2.1 23 13-40 31-53 (79)
129 cd03035 ArsC_Yffb Arsenate Red 23.3 34 0.00073 22.4 0.4 30 22-51 60-89 (105)
130 TIGR02787 codY_Gpos GTP-sensin 22.7 1.6E+02 0.0035 23.0 4.1 63 17-80 183-249 (251)
131 cd03032 ArsC_Spx Arsenate Redu 21.1 91 0.002 20.3 2.2 29 22-51 63-91 (115)
132 PF09068 EF-hand_2: EF hand; 20.7 91 0.002 21.3 2.2 31 13-43 93-123 (127)
133 KOG0169|consensus 20.6 80 0.0017 28.2 2.3 54 16-69 135-191 (746)
No 1
>KOG0044|consensus
Probab=99.22 E-value=1.8e-11 Score=90.27 Aligned_cols=55 Identities=58% Similarity=0.899 Sum_probs=50.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhccc
Q psy13946 3 KGQQPQSEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGD 57 (90)
Q Consensus 3 ~G~~~~p~de~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~ 57 (90)
+|+...|.++.+|++++++||++||+|+||+||++||+++|+.|++|+.+|+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~~~ 187 (193)
T KOG0044|consen 133 TGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQDP 187 (193)
T ss_pred cccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhhcc
Confidence 4666667889999999999999999999999999999999999999999997655
No 2
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=2.3e-08 Score=53.42 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
++++|+.+|+|+||.||++||+..++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 57899999999999999999998765
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.47 E-value=7e-08 Score=57.52 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhhhhCC-----H-HHH-HHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREGSKAD-----P-RIV-QALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~~~~d-----~-~Il-~~L~~~~~~D~d~sG~i~~~ 70 (90)
++.++|+.+|+|+||.||.+||...++.- + .+. .+-.+|...|.|++|.|+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~ 60 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFD 60 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHH
Confidence 46789999999999999999998766542 1 222 23345889999999999753
No 4
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.34 E-value=3.7e-07 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCCCccCHHHHHhh
Q psy13946 20 DKIFDQMDKNHDDRLTLEEFREG 42 (90)
Q Consensus 20 dkiF~~mD~N~DG~IS~eEFi~~ 42 (90)
+++|+.+|+|+||.||.+||.+.
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 57999999999999999999864
No 5
>KOG0034|consensus
Probab=98.13 E-value=2.4e-06 Score=62.74 Aligned_cols=44 Identities=23% Similarity=0.552 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhc
Q psy13946 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSL 55 (90)
Q Consensus 12 e~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~ 55 (90)
+...++.++++|.++|.++||+||++||.+.+.+.|.+.+.|++
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~ 185 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTI 185 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCC
Confidence 56678899999999999999999999999999999999998864
No 6
>PTZ00183 centrin; Provisional
Probab=98.00 E-value=1.4e-05 Score=53.45 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
..+.+.++|..+|.|++|.|+++||...++. ...-..+-.++...|.+++|.|+..
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~ 73 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFE 73 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHH
Confidence 3445566677777777777777777554431 1222233444555566666665543
No 7
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.97 E-value=9.3e-06 Score=55.48 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
...+.-.|..+|+|+||.||.+|+.... .++.-..+-..|...|.|++|.|+..
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e~~~~~f~~~~D~n~Dg~IS~~ 100 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNEHCIKPFFESCDLDKDGSISLD 100 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchHHHHHHHHHHHCCCCCCCCCHH
Confidence 4457778999999999999999998765 34433344567888899999999864
No 8
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.91 E-value=9.4e-06 Score=42.88 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
..++|+.+|+|+||.|+.+||...++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999988765
No 9
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.91 E-value=1.1e-05 Score=52.28 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=40.4
Q ss_pred HHHHHHHhcC-CCCCC-ccCHHHHHhhhhC--------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMD-KNHDD-RLTLEEFREGSKA--------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD-~N~DG-~IS~eEFi~~~~~--------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+.++|+++| +|+|| .||.+|+.+..+. ...-..+-+++..+|.|++|.|+..
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~ 73 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFN 73 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHH
Confidence 3456699999 78998 5999999987743 1233356667888899999999864
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.90 E-value=1.1e-05 Score=51.66 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcC-CCCCC-ccCHHHHHhhhhC--------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 15 PQKRVDKIFDQMD-KNHDD-RLTLEEFREGSKA--------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 15 pe~~vdkiF~~mD-~N~DG-~IS~eEFi~~~~~--------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
..+.+.++|+.+| +|++| .|+.+|+...++. ++.-..+-.++..+|.|.+|.|+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~ 72 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQ 72 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHH
Confidence 3466788999997 99999 5999999987753 2233445566777899999999864
No 11
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.87 E-value=1.5e-05 Score=45.95 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
+.++.||..+|.|+||.|+++||+...+
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4489999999999999999999998654
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.85 E-value=1.7e-05 Score=47.02 Aligned_cols=31 Identities=26% Similarity=0.601 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHhcCCCCCCccCHHHHHhh
Q psy13946 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFREG 42 (90)
Q Consensus 12 e~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~ 42 (90)
+...+..++.+|+.+|+|+||.||++||...
T Consensus 35 ~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 35 DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 3456678899999999999999999999875
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.80 E-value=2.1e-05 Score=46.11 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCCCccCHHHHHhhhhC-CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 20 DKIFDQMDKNHDDRLTLEEFREGSKA-DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 20 dkiF~~mD~N~DG~IS~eEFi~~~~~-d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.++|+.+|+|++|.|+.+|++...+. ...--.+-.++...|.+++|.|+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ 53 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKE 53 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHH
Confidence 46899999999999999999875433 1122234455677788999998754
No 14
>KOG0027|consensus
Probab=97.79 E-value=2.6e-05 Score=53.72 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCH--------HHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADP--------RIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~--------~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
+..+..+++.+|.|+||.|+++||...+.+.. ..-.+...|.-.|.|++|.|+++
T Consensus 43 ~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~ 105 (151)
T KOG0027|consen 43 EEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISAS 105 (151)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHH
Confidence 55678899999999999999999987665421 23467777888889999999875
No 15
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.77 E-value=1.9e-05 Score=43.68 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
+.++|..+|.|++|.|+++||...++. ...-..+-.+|...|.+++|.|+..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFE 56 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHH
Confidence 568899999999999999999876653 1222233346777788889988764
No 16
>PTZ00184 calmodulin; Provisional
Probab=97.74 E-value=4.8e-05 Score=49.93 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC----CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA----DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~----d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
...+.++|..+|.|++|.|+++||+..+.. ....-.+..+|...|.|++|.|+..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ 104 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAA 104 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHH
Confidence 356788888888888888888888875542 1223345667888888888888753
No 17
>PTZ00183 centrin; Provisional
Probab=97.69 E-value=5.1e-05 Score=50.64 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhhhC----CHHHHHHhhcccCCCCCCCCCccc
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGSKA----DPRIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~~~----d~~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
..+..+|..+|.|++|.|+++||+..+.. ...--.+..+|...|.+++|.|+.
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~ 109 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISL 109 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcH
Confidence 34566666666666666666666553322 111223345556666666666654
No 18
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.68 E-value=4.1e-05 Score=49.19 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCC-CC-CCccCHHHHHhhhhC--------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDK-NH-DDRLTLEEFREGSKA--------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~-N~-DG~IS~eEFi~~~~~--------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
......+|+.+|. |+ +|.|+.+|++..++. ++.-..+-.++..+|.|++|.|+..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~ 71 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFE 71 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHH
Confidence 3456788999997 97 699999999976542 3333455556677899999999865
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.68 E-value=4.8e-05 Score=48.95 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCC-HHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKAD-PRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d-~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
......+|+.+|+|++|.|+.+|+.+..+.. ..--++-.++..+|.+.+|.|+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~ 64 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKD 64 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHH
Confidence 3467889999999999999999998865442 111233345666788999999865
No 20
>KOG0027|consensus
Probab=97.66 E-value=5.1e-05 Score=52.24 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHh---hhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFRE---GSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~---~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
....++|+.+|+|++|.|+.+|+.. .+-.+|...++-.++..+|.|++|.|+..
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~ 64 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFE 64 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHH
Confidence 4567999999999999999999965 44448889999999999999999999865
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.60 E-value=0.0001 Score=46.33 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCC--CCCCccCHHHHHhhhhC--C------HHHHHHhhcccCCCCCCCCCcccc
Q psy13946 17 KRVDKIFDQMDK--NHDDRLTLEEFREGSKA--D------PRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 17 ~~vdkiF~~mD~--N~DG~IS~eEFi~~~~~--d------~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
+.+.++|..+|+ |++|.|+++||...++. . ..-..+-.++...|.+++|.|+.+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~ 71 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQ 71 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHH
Confidence 346778999999 89999999999987753 1 012334445667788999998764
No 22
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.58 E-value=7.8e-05 Score=50.91 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhC
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKA 45 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~ 45 (90)
.+..++++|+.+|.|+||.||++||...+.+
T Consensus 78 ~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 78 NEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred hHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3678899999999999999999999987754
No 23
>KOG0037|consensus
Probab=97.56 E-value=9.8e-05 Score=55.97 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
+.-+...||.+.+|+|.+.||+..-+ .|..|.++|.+.|.|.||+|+.+
T Consensus 96 crlmI~mfd~~~~G~i~f~EF~~Lw~---~i~~Wr~vF~~~D~D~SG~I~~s 144 (221)
T KOG0037|consen 96 CRLMISMFDRDNSGTIGFKEFKALWK---YINQWRNVFRTYDRDRSGTIDSS 144 (221)
T ss_pred HHHHHHHhcCCCCCccCHHHHHHHHH---HHHHHHHHHHhcccCCCCcccHH
Confidence 34566778888888888888887654 68899999999999999999975
No 24
>PTZ00184 calmodulin; Provisional
Probab=97.56 E-value=9.7e-05 Score=48.45 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCccc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
.+..+..+|+.+|.|++|.|+.+||...++. ...-...-.++..+|.+++|.|+.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 139 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINY 139 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcH
Confidence 3567889999999999999999999887643 112233344577889999999875
No 25
>KOG0044|consensus
Probab=97.55 E-value=0.0001 Score=54.52 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=44.3
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhC-----CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 13 NTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKA-----DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 13 ~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-----d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
-++...++.+|+.+|+|+||.|+++||+.+.+. ...=++|. |.-.|.|++|.|+..
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~--F~lyD~dgdG~It~~ 120 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA--FRLYDLDGDGYITKE 120 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh--heeecCCCCceEcHH
Confidence 567889999999999999999999999875433 11222333 999999999999864
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.54 E-value=8.4e-05 Score=48.52 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=39.8
Q ss_pred HHHHHHHhcCC-CCCCccCHHHHHhhhhC-CHHH----HHHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMDK-NHDDRLTLEEFREGSKA-DPRI----VQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD~-N~DG~IS~eEFi~~~~~-d~~I----l~~L~~~~~~D~d~sG~i~~~ 70 (90)
-+..+|+.+|+ +++|.|+..||+..+++ =+.. -.+-.++..+|.|++|.|+..
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~ 67 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFE 67 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHH
Confidence 34678999999 99999999999887765 2221 335566788899999999864
No 27
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.52 E-value=0.00012 Score=34.98 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.1
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
+.++|+.+|.|++|.|++.||...++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 46899999999999999999988664
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.50 E-value=0.00012 Score=47.57 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHh-cCCCCCC-ccCHHHHHhhhhCC-HH-------HHHHhhcccCCCCCCCCCcccc
Q psy13946 17 KRVDKIFDQ-MDKNHDD-RLTLEEFREGSKAD-PR-------IVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 17 ~~vdkiF~~-mD~N~DG-~IS~eEFi~~~~~d-~~-------Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.....+|++ .|++++| .||.+||+..+... |. -..+-+++..+|.|++|.|+..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~ 72 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQ 72 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHH
Confidence 455678998 8899986 99999999877653 11 1234456778899999999864
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.43 E-value=0.00011 Score=47.64 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHHhcCC-CC-CCccCHHHHHhhhhC------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 20 DKIFDQMDK-NH-DDRLTLEEFREGSKA------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 20 dkiF~~mD~-N~-DG~IS~eEFi~~~~~------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
-.+|+++|. |+ +|.|+.+||.+.+++ ...-.++-.++..+|.|++|.|+.+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~ 71 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQ 71 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHH
Confidence 457999998 77 899999999887741 1233455556778899999999864
No 30
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.42 E-value=0.00018 Score=47.76 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.-++++|+.+|.|+||+|+++||...+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 468999999999999999999998644
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.40 E-value=0.0002 Score=51.77 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCccc
Q psy13946 13 NTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 13 ~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
..+++...+.|+.+|+|+||+|+..|++..++. +-.-.++-.++...|.|++|.|+-
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~ 147 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDY 147 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeH
Confidence 345667778888888888888888888776654 111223333455567778887764
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.38 E-value=0.0002 Score=46.40 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
....++++|+.+|.|+||.|+++||+..+.
T Consensus 51 ~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 51 DPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 345789999999999999999999987553
No 33
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.34 E-value=0.00028 Score=45.25 Aligned_cols=31 Identities=42% Similarity=0.636 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 14 tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
.++..++.+|+.+|.|+||.|+++||+..+.
T Consensus 48 ~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 48 KNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3467899999999999999999999987664
No 34
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.29 E-value=0.00026 Score=46.22 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.-++++|+.+|.|+||+|+|+||+..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 568999999999999999999998644
No 35
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.26 E-value=0.00031 Score=45.45 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHhcC-CCCCC-ccCHHHHHhhhhC--------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMD-KNHDD-RLTLEEFREGSKA--------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD-~N~DG-~IS~eEFi~~~~~--------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+..+|+.+| +|+|| .|+.+|+...++. .+.--.+-.++..+|.|++|.|+..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~ 71 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQ 71 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 4578899998 89999 6999999876654 1222334445667799999999864
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.22 E-value=0.00045 Score=44.80 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
..-++++|+.+|.|+||+|+++||+..+
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 3568899999999999999999998744
No 37
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.20 E-value=0.00028 Score=51.01 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHH
Q psy13946 11 DENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPR 48 (90)
Q Consensus 11 de~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~ 48 (90)
++..+.+.|+++++.+|.|+||.|+++||++.+..++.
T Consensus 122 ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 122 GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 56778899999999999999999999999998876653
No 38
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.19 E-value=0.00033 Score=56.42 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+..+..+|+.+|.|+||.|+++||.. .-.+|..+|.|++|.|+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~----------~~~~F~~~D~d~DG~Is~e 377 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG----------SDAVFDALDLNHDGKITPE 377 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH----------HHHHHHHhCCCCCCCCcHH
Confidence 356778999999999999999999952 3456899999999999864
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=97.16 E-value=0.00036 Score=59.54 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.++++|+.+|.|+||.|+++||+..+.. ...--++...|...|.|++|.|+.+
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~d 235 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTID 235 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHH
Confidence 4899999999999999999999975543 2233456778888899999999876
No 40
>KOG0036|consensus
Probab=97.03 E-value=0.00086 Score=55.23 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 14 tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+.+-+..+|+.||.|.||.+.|+||.+-+.. .-++...+|..+|.+++|.|+..
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~--~E~~l~~~F~~iD~~hdG~i~~~ 102 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN--KELELYRIFQSIDLEHDGKIDPN 102 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHHHH--hHHHHHHHHhhhccccCCccCHH
Confidence 44567789999999999999999999987643 45778889999999999999865
No 41
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.00 E-value=0.00083 Score=43.42 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.++-++++|+.+|.|+||+|+++||+...
T Consensus 49 t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 49 QDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred CHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 45678999999999999999999997643
No 42
>KOG0034|consensus
Probab=96.99 E-value=0.0011 Score=48.69 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhC------C---HHHHHHh-hcccCCCCCCCCCcccc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKA------D---PRIVQAL-SLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~------d---~~Il~~L-~~~~~~D~d~sG~i~~~ 70 (90)
+++++.-.|+.+|.|++|.|+.+|+...+.. + ..+..+. .++...|.|++|.|+..
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Isfe 167 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFE 167 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHH
Confidence 4468888999999999999999999875544 2 2222222 36888999999999975
No 43
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.95 E-value=0.0011 Score=42.78 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
++-++++|+.+|.|+||+|+++||+..+.
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45689999999999999999999987553
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.92 E-value=0.0012 Score=38.48 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
++..++++|..+|.|++|.|+++||+..+.
T Consensus 31 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 31 PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 456689999999999999999999987654
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.91 E-value=0.0014 Score=35.95 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 14 tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.+...+..+|.++|.|++|.|+++||....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 33 LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 345678889999999999999999997653
No 46
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.88 E-value=0.0012 Score=42.23 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
.++.++++|+.+|.|+||.|+++||+..+.
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346789999999999999999999987665
No 47
>KOG4251|consensus
Probab=96.81 E-value=0.0023 Score=50.44 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCcc----cHHHHHHHHHHhcCCCCCCccCHHHHHhhhhCC--HHHHHH----hhcccCCCCCCCCCcccc
Q psy13946 1 MFKGQQPQSEDEN----TPQKRVDKIFDQMDKNHDDRLTLEEFREGSKAD--PRIVQA----LSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 1 ~~~G~~~~p~de~----tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d--~~Il~~----L~~~~~~D~d~sG~i~~~ 70 (90)
||+|+---+-|+. .....+..||.+.|.|-||+||-.|..+...++ +.+.++ -..|+.+|-|++|+|.-+
T Consensus 81 vflgkdLggfDedaeprrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWd 160 (362)
T KOG4251|consen 81 VFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWD 160 (362)
T ss_pred heeccCCCCcccccchhHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehh
Confidence 5677764343322 344566778999999999999999998766553 334443 456999999999998643
No 48
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.78 E-value=0.0014 Score=41.76 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
++.++.+|+.+|.|++|.|+++||+..+.
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45789999999999999999999987554
No 49
>KOG0377|consensus
Probab=96.56 E-value=0.0021 Score=53.95 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhC-------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKA-------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~-------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+.||+-+|+|+.|.||++||+..++- +-+=-.++++-+.+|.+++|+|+..
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlN 607 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLN 607 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHH
Confidence 578999999999999999999876643 1122355667788999999999864
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.55 E-value=0.0034 Score=39.31 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA 45 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~ 45 (90)
++.++++|..+|.|++|.|+++||+..+..
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 567899999999999999999999886653
No 51
>KOG4223|consensus
Probab=96.28 E-value=0.0035 Score=49.93 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCH-------H-HHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADP-------R-IVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~-------~-Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.-.+......+|+|+||+|+++||+-..-+.. + +.+-=+.+...|.|+.|..+.+
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~d 261 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGD 261 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHH
Confidence 33455556667777777777777764332211 1 1122234444566666666543
No 52
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.14 E-value=0.007 Score=38.78 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
+..++++|..+|.|++|.|+++||+..+.
T Consensus 43 ~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 43 QTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 45789999999999999999999987553
No 53
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.10 E-value=0.0052 Score=49.60 Aligned_cols=26 Identities=46% Similarity=0.776 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
++.+|+.+|.|+||.||++||+.+++
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 48999999999999999999999875
No 54
>KOG4223|consensus
Probab=95.98 E-value=0.0082 Score=47.87 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhhhhC--CHHHHH--HhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREGSKA--DPRIVQ--ALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~~~~--d~~Il~--~L~~~~~~D~d~sG~i~~~ 70 (90)
+=++-|+..|.|+||.+|++||.....- .|.... +....+.+|+|+.|+|+..
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~e 220 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLE 220 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHH
Confidence 4467799999999999999999875543 333333 2345788999999999864
No 55
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.97 E-value=0.0081 Score=36.22 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
-+..+..+|++.|++++|.+..+||.+.++
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 357899999999999999999999988764
No 56
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.91 E-value=0.0012 Score=44.70 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC-CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA-DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
..-+.-.|..+|.|+||.|+..|+...... .+.--.+-..+..-|.|++|.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~ 108 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLD 108 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHH
Confidence 445666799999999999999999754331 2232334556788899999999753
No 57
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.82 E-value=0.014 Score=37.27 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCC--CCccCHHHHHhhhhC-CHH-------HHHHhhcccCCCCCCCCCcccc
Q psy13946 18 RVDKIFDQMDKNH--DDRLTLEEFREGSKA-DPR-------IVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 18 ~vdkiF~~mD~N~--DG~IS~eEFi~~~~~-d~~-------Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+-.+|++++.++ +|.||.+||...... -+. -..+-.++..+|.|++|.|+..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~ 71 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFE 71 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHH
Confidence 4567899999774 799999999987752 111 2445667778899999999865
No 58
>KOG0028|consensus
Probab=95.74 E-value=0.017 Score=42.52 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhh-----hhCCHHHHHHhhcccCCCCCCCCCcc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREG-----SKADPRIVQALSLGDSSNVAPSGSSP 68 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~-----~~~d~~Il~~L~~~~~~D~d~sG~i~ 68 (90)
+.++...+|+++.|+|++++|... ..+| ..-+++..|.-.|.|++|+|+
T Consensus 71 i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t~eEi~~afrl~D~D~~Gkis 124 (172)
T KOG0028|consen 71 ILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-TKEEIKKAFRLFDDDKTGKIS 124 (172)
T ss_pred HHHHHHhhhhccCceechHHHHHHHHHHHhccC-cHHHHHHHHHcccccCCCCcC
Confidence 344555555555555555555432 2223 444445555555666666654
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.69 E-value=0.0046 Score=35.37 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=32.7
Q ss_pred CCCccCHHHHHhhhhC---C-HHHHHHhhcccCCCCCCCCCcccc
Q psy13946 30 HDDRLTLEEFREGSKA---D-PRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 30 ~DG~IS~eEFi~~~~~---d-~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
++|.|+.+||...++. + .+--++-.+|..+|.|++|.|+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~ 45 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFD 45 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHH
Confidence 4799999999986632 3 555667788999999999999753
No 60
>KOG0036|consensus
Probab=95.36 E-value=0.017 Score=47.84 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.|.+.-++|+.+|.|.||.|..+|..+.++. +-+-.+.-..++..|.|++++|+..
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~ 138 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLE 138 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccH
Confidence 4667889999999999999999998776655 2333455558899999999999753
No 61
>KOG4065|consensus
Probab=95.34 E-value=0.019 Score=40.74 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHHhcCCCCCCccCHHHHHhh
Q psy13946 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREG 42 (90)
Q Consensus 10 ~de~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~ 42 (90)
.++...+..++.+.+.-|.|+||.|.|.||.+.
T Consensus 110 ~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 110 SSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 466778899999999999999999999999864
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.02 E-value=0.02 Score=38.42 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.....+||...|.|+||.++++||.-+.
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 4677899999999999999999997654
No 63
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.71 E-value=0.017 Score=38.98 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 14 TPQKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 14 tpe~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
.++..+..+|+.-|.|+||.||+.||..
T Consensus 85 ~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 85 PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4566789999999999999999999964
No 64
>KOG0028|consensus
Probab=94.48 E-value=0.068 Score=39.33 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCcccccCC--CChhhHhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPASASA--ASPLVLERD 82 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~~~~~--~~~~~~~~~ 82 (90)
.+.++..|+.+|.+++|.|.++|+..+.++ .+.=-+++.+....|++.+|.|.+...- +|-..++||
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 346778899999999999999999654433 3334455556677888999999886432 344455555
No 65
>KOG0041|consensus
Probab=94.38 E-value=0.04 Score=42.17 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhhcccCCCCCCCCCccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
-+-...+|.++|.+.||.|++.|.+...-+ -..=+.+-++.-.+|-|..|+|+.
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSf 154 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSF 154 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhH
Confidence 345678999999999999999998754333 223344445556678888888765
No 66
>KOG0038|consensus
Probab=94.25 E-value=0.068 Score=39.35 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHH
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQA 52 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~ 52 (90)
+..++++.+..|.|+||+||+.||-..+.+-|..+..
T Consensus 148 ~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFlsT 184 (189)
T KOG0038|consen 148 ELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLST 184 (189)
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHhh
Confidence 4578999999999999999999999988888876653
No 67
>KOG0037|consensus
Probab=93.62 E-value=0.087 Score=40.13 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.+..+.|++++|.-++|.|.+++|++.|- .+..+...|...|.+..|.|..+
T Consensus 159 pq~~~~lv~kyd~~~~g~i~FD~FI~ccv---~L~~lt~~Fr~~D~~q~G~i~~~ 210 (221)
T KOG0037|consen 159 PQFYNLLVRKYDRFGGGRIDFDDFIQCCV---VLQRLTEAFRRRDTAQQGSITIS 210 (221)
T ss_pred HHHHHHHHHHhccccCCceeHHHHHHHHH---HHHHHHHHHHHhccccceeEEEe
Confidence 35667788888877788888888888774 45666677888888888888765
No 68
>PLN02964 phosphatidylserine decarboxylase
Probab=93.36 E-value=0.085 Score=45.31 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhhh-CCHHHHH---HhhcccCCCCCCCCCcccc
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGSK-ADPRIVQ---ALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~~-~d~~Il~---~L~~~~~~D~d~sG~i~~~ 70 (90)
+...+.|..+|.|+||.| +....+.+- .+|.-.+ +-.+|...|.|++|.|+.+
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Idfd 199 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFS 199 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHH
Confidence 456778999999999998 777766554 3554444 5667777899999999965
No 69
>KOG0031|consensus
Probab=92.84 E-value=0.16 Score=37.38 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
.-+....-|+.||.|+||.|.++....
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d 56 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRD 56 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHH
Confidence 334457789999999999999988765
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=90.83 E-value=0.32 Score=32.23 Aligned_cols=50 Identities=6% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCCccCHHHHHhhhhCC-HHHHH-------HhhcccCCCCCCCCCcccc
Q psy13946 20 DKIFDQMDKNHDDRLTLEEFREGSKAD-PRIVQ-------ALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 20 dkiF~~mD~N~DG~IS~eEFi~~~~~d-~~Il~-------~L~~~~~~D~d~sG~i~~~ 70 (90)
-.+|.++-.+ .|.+|+.||++.+++. |.++. +-.++..+|.|++|.|++.
T Consensus 11 I~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~ 68 (91)
T cd05024 11 MLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQ 68 (91)
T ss_pred HHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHH
Confidence 4578888733 4699999999877541 22222 3346788899999999874
No 71
>PF14658 EF-hand_9: EF-hand domain
Probab=90.73 E-value=0.15 Score=32.12 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=32.9
Q ss_pred HHHHhcCCCCCCccCHHHHH---hhhhC-CHHHHHHhhcccCCCCCCC-CCcccc
Q psy13946 21 KIFDQMDKNHDDRLTLEEFR---EGSKA-DPRIVQALSLGDSSNVAPS-GSSPAS 70 (90)
Q Consensus 21 kiF~~mD~N~DG~IS~eEFi---~~~~~-d~~Il~~L~~~~~~D~d~s-G~i~~~ 70 (90)
..|+.+|+++.|.|....++ +.+.. +|.-.++-.+...+|-++. |+|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d 56 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFD 56 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHH
Confidence 46888888888888876664 44444 6666666666666666666 666544
No 72
>KOG3555|consensus
Probab=90.48 E-value=0.22 Score=40.87 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
..-+.=+|.++|.|.||.++..|.... -.|......-..|++-|..++|+|+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I-~ldknE~CikpFfnsCD~~kDg~iS~~ 302 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAI-ELDKNEACIKPFFNSCDTYKDGSISTN 302 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhh-hccCchhHHHHHHhhhcccccCccccc
Confidence 445667899999999999999998542 234455556678999999999999864
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=88.90 E-value=0.38 Score=32.18 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHh-hhhCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFRE-GSKADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~-~~~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
...-..+|+.+| +++|.||-++-.. ..+.+-....+-++++-+|.|++|..+..
T Consensus 9 ~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~ 63 (104)
T PF12763_consen 9 KQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFE 63 (104)
T ss_dssp HHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHH
T ss_pred HHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHH
Confidence 456688999998 4789999988776 33334344455566777899999998754
No 74
>KOG2643|consensus
Probab=87.60 E-value=0.13 Score=43.04 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.++-+|.-+|.|+||.||.+||+...
T Consensus 426 VvdvvF~IFD~N~Dg~LS~~EFl~Vm 451 (489)
T KOG2643|consen 426 VVDVVFTIFDENNDGTLSHKEFLAVM 451 (489)
T ss_pred eeeeEEEEEccCCCCcccHHHHHHHH
Confidence 56788999999999999999997543
No 75
>KOG2643|consensus
Probab=85.06 E-value=0.43 Score=39.95 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
|+....--|..+|.|+||.|..+||...+
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 33344455899999999999999997655
No 76
>KOG4578|consensus
Probab=84.61 E-value=0.68 Score=37.86 Aligned_cols=30 Identities=33% Similarity=0.635 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 12 ENTPQKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 12 e~tpe~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
-..+.+.+.++|+.-|.|+|-+||+.||+.
T Consensus 365 ~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~ 394 (421)
T KOG4578|consen 365 KSKPRKCSRKFFKYCDLNKDKKISLDEWRG 394 (421)
T ss_pred hccHHHHhhhcchhcccCCCceecHHHHhh
Confidence 355778889999999999999999999975
No 77
>KOG1029|consensus
Probab=81.24 E-value=0.87 Score=40.87 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
....-.||..-|.|+||+++.+|||-
T Consensus 228 q~~LA~IW~LsDvd~DGkL~~dEfil 253 (1118)
T KOG1029|consen 228 QNQLAHIWTLSDVDGDGKLSADEFIL 253 (1118)
T ss_pred hhhHhhheeeeccCCCCcccHHHHHH
Confidence 34567899999999999999999974
No 78
>KOG0030|consensus
Probab=79.95 E-value=2.8 Score=30.37 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHH---hhhhCCHHHHHHhhcccCCCCC
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFR---EGSKADPRIVQALSLGDSSNVA 62 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi---~~~~~d~~Il~~L~~~~~~D~d 62 (90)
.....+|..+|.++||+|++..-- +..=.||.-.+.+.+..+.+.+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~ 59 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRR 59 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccc
Confidence 355799999999999999987664 4444466555555555544444
No 79
>KOG4251|consensus
Probab=78.20 E-value=1.7 Score=34.58 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHhcCCCCCCccCHHHHHhhhhC-----------CHHHHHHhhcc-cCCCCCCCCCcccc
Q psy13946 14 TPQKRVDKIFDQMDKNHDDRLTLEEFREGSKA-----------DPRIVQALSLG-DSSNVAPSGSSPAS 70 (90)
Q Consensus 14 tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-----------d~~Il~~L~~~-~~~D~d~sG~i~~~ 70 (90)
.....|+.|...+|.|+|-.+|..||+.+.-- +-+.-+-+..| +-+|.+++|.+++.
T Consensus 233 mLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTae 301 (362)
T KOG4251|consen 233 MLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAE 301 (362)
T ss_pred hHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHH
Confidence 34668999999999999999999999864321 12233333334 45799999998764
No 80
>KOG0751|consensus
Probab=78.14 E-value=0.93 Score=38.94 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=33.8
Q ss_pred HhcCCCCCCccCHHHHH--hhhhCCHHHHHHhhcccCCCCCCCCCcccccC
Q psy13946 24 DQMDKNHDDRLTLEEFR--EGSKADPRIVQALSLGDSSNVAPSGSSPASAS 72 (90)
Q Consensus 24 ~~mD~N~DG~IS~eEFi--~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~~~ 72 (90)
.-.|.-+||.||++||. +.+.+-|..+- +..|.-.|...+|.++....
T Consensus 81 ~iaD~tKDglisf~eF~afe~~lC~pDal~-~~aFqlFDr~~~~~vs~~~~ 130 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESVLCAPDALF-EVAFQLFDRLGNGEVSFEDV 130 (694)
T ss_pred hhhhhcccccccHHHHHHHHhhccCchHHH-HHHHHHhcccCCCceehHHH
Confidence 35678899999999996 56777665443 45566667777888776544
No 81
>KOG0377|consensus
Probab=77.23 E-value=2.9 Score=35.68 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
..+.++=+.||-|+||.|.+.||.++..
T Consensus 587 ~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 587 DEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 3566778899999999999999988653
No 82
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.61 E-value=2.5 Score=31.17 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHH----------HHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKADPR----------IVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~----------Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
.++-+.||.++++.+.+.+|+.|..+..+.+.. .+++..+|- +-.|++|.+.++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke 158 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKE 158 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHH
Confidence 356799999999999999999999886665433 445544443 357778877665
No 83
>KOG4004|consensus
Probab=74.35 E-value=2.2 Score=32.89 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
+..+.++|+.-|.|+||.|++.||-.
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhc
Confidence 66788999999999999999999965
No 84
>KOG0031|consensus
Probab=73.55 E-value=7.4 Score=28.70 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhC-----CHHHHHHhhcccCCCCCCCCCcc
Q psy13946 13 NTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKA-----DPRIVQALSLGDSSNVAPSGSSP 68 (90)
Q Consensus 13 ~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-----d~~Il~~L~~~~~~D~d~sG~i~ 68 (90)
..|++-+-.-|..+|.++.|+|..+.+++.+.. ++.- .-++|...-.|..|-|+
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eE--V~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEE--VDEMYREAPIDKKGNFD 155 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHH--HHHHHHhCCcccCCcee
Confidence 567888889999999999999999888886654 2222 22334444445555554
No 85
>KOG0041|consensus
Probab=71.99 E-value=3.7 Score=31.60 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhh--------hhCCHHHHHHhhcccCCCCCCCC
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREG--------SKADPRIVQALSLGDSSNVAPSG 65 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~--------~~~d~~Il~~L~~~~~~D~d~sG 65 (90)
-+..+....|.|.||+||+-||.-. +++| +.+..|.....+|+-+-|
T Consensus 136 ~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d-s~~~~LAr~~eVDVskeG 190 (244)
T KOG0041|consen 136 GLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED-SGLLRLARLSEVDVSKEG 190 (244)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc-hHHHHHHHhcccchhhhh
Confidence 3577889999999999999999621 2223 445556666677776655
No 86
>KOG0046|consensus
Probab=71.23 E-value=2.7 Score=36.14 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
+.++.+....+.|.+|+|++|||..
T Consensus 57 eei~~~l~~~~~~~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 57 EEIKEILGEVGVDADGRVEFEEFVG 81 (627)
T ss_pred HHHHHHHhccCCCcCCccCHHHHHH
Confidence 3444444444444444444444444
No 87
>KOG2562|consensus
Probab=70.25 E-value=3.1 Score=35.09 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=37.8
Q ss_pred HHHHHHHHHH----hcCCCCCCccCHHHHHhhh--hCCHHHHHHhh-cccCCCCCCCCCccc
Q psy13946 15 PQKRVDKIFD----QMDKNHDDRLTLEEFREGS--KADPRIVQALS-LGDSSNVAPSGSSPA 69 (90)
Q Consensus 15 pe~~vdkiF~----~mD~N~DG~IS~eEFi~~~--~~d~~Il~~L~-~~~~~D~d~sG~i~~ 69 (90)
.+..+++||. ..=.-.+|++++++|.-.+ ..|..--.+++ .|..+|.|.+|-++.
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~ 370 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTL 370 (493)
T ss_pred hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccH
Confidence 3678999999 4444479999999997533 22333333333 378889999998764
No 88
>PF14658 EF-hand_9: EF-hand domain
Probab=68.51 E-value=8.2 Score=24.20 Aligned_cols=28 Identities=7% Similarity=0.298 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCCC-CccCHHHHHhhh
Q psy13946 16 QKRVDKIFDQMDKNHD-DRLTLEEFREGS 43 (90)
Q Consensus 16 e~~vdkiF~~mD~N~D-G~IS~eEFi~~~ 43 (90)
+..++.+.+.+|.++. |.|+++.|....
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 4578899999999986 999999997643
No 89
>KOG4578|consensus
Probab=68.33 E-value=2.4 Score=34.76 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHH-HHhcCCCCCCccCHHHHHh---hhhCCH-HHHHHhhcccCCCCCCCCCcccc
Q psy13946 16 QKRVDKI-FDQMDKNHDDRLTLEEFRE---GSKADP-RIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 16 e~~vdki-F~~mD~N~DG~IS~eEFi~---~~~~d~-~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
++||-.. |..+|+|+++.|...||+. .+.+-. .=...-.++..-|.+++-+|+.+
T Consensus 331 eeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~ 390 (421)
T KOG4578|consen 331 EERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLD 390 (421)
T ss_pred hhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHH
Confidence 3444444 9999999999999999863 333322 22345567888888888888764
No 90
>KOG1955|consensus
Probab=68.32 E-value=4.8 Score=34.80 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
|-.....||+.-|.++||-+|+.||..
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcA 289 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCA 289 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHh
Confidence 334568999999999999999999964
No 91
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=64.93 E-value=5.4 Score=19.79 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.6
Q ss_pred CCCCCCccCHHHH
Q psy13946 27 DKNHDDRLTLEEF 39 (90)
Q Consensus 27 D~N~DG~IS~eEF 39 (90)
|.|+||+|+--.|
T Consensus 1 DvN~DG~vna~D~ 13 (21)
T PF00404_consen 1 DVNGDGKVNAIDL 13 (21)
T ss_dssp -TTSSSSSSHHHH
T ss_pred CCCCCCcCCHHHH
Confidence 7899999987555
No 92
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=64.91 E-value=6.4 Score=27.47 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
.+..+++|.+|-.|-.|+|.|.||..-..
T Consensus 6 DeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 6 DEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred HHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 35679999999999999999999986544
No 93
>KOG4347|consensus
Probab=64.45 E-value=6.5 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
......++|.++|.+.+|.|++.+|+.|..
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~ 582 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLS 582 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHH
Confidence 456789999999999999999999987554
No 94
>KOG0046|consensus
Probab=61.92 E-value=9.7 Score=32.92 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhC---------CHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKA---------DPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~---------d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
...-|.++| |++|.|+..|......+ ...+.++| ...+.|.+|.|+..
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l---~~~~~~~~g~v~fe 77 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEIL---GEVGVDADGRVEFE 77 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHH---hccCCCcCCccCHH
Confidence 345699999 99999999887643322 66666655 45678888888764
No 95
>KOG4065|consensus
Probab=59.63 E-value=18 Score=25.81 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHhcCCCCCCccCHHHHHhhhhC-----------------CHHHHHHhhcccCCCCCCCCCcc
Q psy13946 10 EDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKA-----------------DPRIVQALSLGDSSNVAPSGSSP 68 (90)
Q Consensus 10 ~de~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-----------------d~~Il~~L~~~~~~D~d~sG~i~ 68 (90)
....+|++.-=..|+..|.|++|.|.-=|.+++..- .+-+--.-.+++..|.+.+|-|+
T Consensus 60 ~a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 60 VAKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred hhhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceee
Confidence 345788888778899999999999998888764432 01111222345666777777775
No 96
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=57.98 E-value=5.7 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCCccCHHHHHhhhhC---CHHHHHHhh
Q psy13946 18 RVDKIFDQMDKNHDDRLTLEEFREGSKA---DPRIVQALS 54 (90)
Q Consensus 18 ~vdkiF~~mD~N~DG~IS~eEFi~~~~~---d~~Il~~L~ 54 (90)
..+-|...++.=+.++||.+||++.++. |.-+...+.
T Consensus 26 ~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~ 65 (70)
T PF12174_consen 26 KMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIK 65 (70)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555557899999999986654 544444433
No 97
>KOG3555|consensus
Probab=56.80 E-value=6.8 Score=32.36 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh-CCHHHHHHhhcccCCCCC
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK-ADPRIVQALSLGDSSNVA 62 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~-~d~~Il~~L~~~~~~D~d 62 (90)
|..++-+|+.-|..+||.||-.||-...+ .++....-|......+++
T Consensus 281 E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~pc~~e~~riqk~~~~ 328 (434)
T KOG3555|consen 281 EACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPPCQAELCRIQKHDVD 328 (434)
T ss_pred hhHHHHHHhhhcccccCccccchhhhhhccCCCccccHHHHHHhhhcc
Confidence 56788999999999999999999976333 355555555554444443
No 98
>KOG4666|consensus
Probab=54.35 E-value=9.9 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHH
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQA 52 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~ 52 (90)
+--+|..++...||+|++++|.+.+...|.+..+
T Consensus 333 v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 333 VPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred ccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 4455666666667777777777666666665543
No 99
>KOG3866|consensus
Probab=54.20 E-value=8.9 Score=31.48 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhC
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKA 45 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~ 45 (90)
-+.+++..|+|.|-.||++||.....+
T Consensus 298 REHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 298 REHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred HHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 356899999999999999999875443
No 100
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=54.13 E-value=8.9 Score=20.48 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.4
Q ss_pred CCCccCHHHHHhhhhC
Q psy13946 30 HDDRLTLEEFREGSKA 45 (90)
Q Consensus 30 ~DG~IS~eEFi~~~~~ 45 (90)
+.|.||++||+.++++
T Consensus 1 ~~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 1 SSGTISKEEYLDMASR 16 (33)
T ss_pred CCceecHHHHHHHHHH
Confidence 3689999999998865
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=53.31 E-value=15 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
+..||.++=. +.+.+|.++|.+.+.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~ 26 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLR 26 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHH
Confidence 5789999944 789999999987553
No 102
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=49.34 E-value=23 Score=22.49 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHhcCCCCCCccCHHHHH-----hhhhCCHHHHHHhhcccCCCCCCCCC
Q psy13946 22 IFDQMDKNHDDRLTLEEFR-----EGSKADPRIVQALSLGDSSNVAPSGS 66 (90)
Q Consensus 22 iF~~mD~N~DG~IS~eEFi-----~~~~~d~~Il~~L~~~~~~D~d~sG~ 66 (90)
+.+.|..+.+|-|.++.+. +....+..|.++|..-..+.++.+|+
T Consensus 23 Lr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~~~i~~Al~~S~~lev~~d~~ 72 (76)
T cd08029 23 LWTLTGGSNNGWVPIKTIASFKRMRRFQPLEAVVEALRESELLEVSEDGE 72 (76)
T ss_pred HHHHhccCCCCcEehHHHhCchHHHHcCCHHHHHHHHHhCCeEEEeCCCC
Confidence 4567888999999998773 34444577777777655555555553
No 103
>KOG1707|consensus
Probab=48.34 E-value=21 Score=31.12 Aligned_cols=29 Identities=21% Similarity=0.427 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
.-+++..+|.++|.|+||-++-+|+...-
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF 341 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLF 341 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHh
Confidence 36789999999999999999999996543
No 104
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=47.06 E-value=17 Score=25.55 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
...++-||.+.=..+..+|+|++|.+.+.
T Consensus 40 ~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 40 STDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 45789999998766777899999987553
No 105
>KOG1029|consensus
Probab=44.78 E-value=21 Score=32.52 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
....-.||..-|.|+||+....||--+|
T Consensus 48 ~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 48 TPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred hHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 3467899999999999999999995444
No 106
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=44.69 E-value=23 Score=20.12 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=17.5
Q ss_pred HHHHh-cCCCC-CCccCHHHHHhhhhC
Q psy13946 21 KIFDQ-MDKNH-DDRLTLEEFREGSKA 45 (90)
Q Consensus 21 kiF~~-mD~N~-DG~IS~eEFi~~~~~ 45 (90)
.+|++ ..++| ...+|+.||++.+++
T Consensus 10 ~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 10 DVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45554 45555 488999999987654
No 107
>KOG1651|consensus
Probab=43.07 E-value=11 Score=27.72 Aligned_cols=64 Identities=27% Similarity=0.249 Sum_probs=44.9
Q ss_pred HHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcccCCCCCCCCCcccc-cCCCChhhHhhhhh
Q psy13946 21 KIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGDSSNVAPSGSSPAS-ASAASPLVLERDIM 84 (90)
Q Consensus 21 kiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~~~~D~d~sG~i~~~-~~~~~~~~~~~~~~ 84 (90)
.||+++|.||++.=.+--|.+.-+..+-....-=-|+..=+|++|.+-.. .|-++|+-+|.||-
T Consensus 102 ~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe 166 (171)
T KOG1651|consen 102 PIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIE 166 (171)
T ss_pred ccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHH
Confidence 78999999999988888887644433211122223667778999997665 45568999998874
No 108
>KOG0038|consensus
Probab=41.07 E-value=47 Score=24.60 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhh----hCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGS----KADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~----~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
-.+|-+.+-.||+|.+|++.|.... ..-|.-+.+--.|.-.|.|+++.|-..
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~ 128 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHD 128 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHH
Confidence 4567777889999999999998633 334555555556667788888887554
No 109
>KOG0751|consensus
Probab=40.18 E-value=31 Score=30.04 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhh
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSK 44 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~ 44 (90)
.-.-..+|+.+|+++.|.+|+++|.+...
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHh
Confidence 44567889999999999999999976443
No 110
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=39.82 E-value=34 Score=25.05 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCCCccCHHHHHhhhhC
Q psy13946 20 DKIFDQMDKNHDDRLTLEEFREGSKA 45 (90)
Q Consensus 20 dkiF~~mD~N~DG~IS~eEFi~~~~~ 45 (90)
.-+.+.+|.|+||+++-+|.....+.
T Consensus 53 ~~ll~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 53 AYLLEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHHHHhhhhcccCCCCHHHHHHHHHH
Confidence 34566899999999999999776653
No 111
>KOG0998|consensus
Probab=39.51 E-value=18 Score=32.17 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhh-hCCHHHHHHhhcccCCCCCCCCCcccc
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGS-KADPRIVQALSLGDSSNVAPSGSSPAS 70 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~-~~d~~Il~~L~~~~~~D~d~sG~i~~~ 70 (90)
..-.+||.++|++.||.|+..++.... ...-..-.+-..+...|....|.++++
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ 337 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKD 337 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCccccc
Confidence 345669999999999999999987633 233344445556778888899998887
No 112
>KOG1954|consensus
Probab=38.21 E-value=26 Score=29.66 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHH
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFR 40 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi 40 (90)
|....-+||+..|.|+||.+.-+||-
T Consensus 475 pnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 475 PNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chhHHHhhhhhhcCCcccCcCHHHHH
Confidence 34567899999999999999999994
No 113
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=37.07 E-value=20 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHhcCCCCCCccCHHHHHhhhhCCHHHHH
Q psy13946 21 KIFDQMDKNHDDRLTLEEFREGSKADPRIVQ 51 (90)
Q Consensus 21 kiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~ 51 (90)
..|..++.+....+|.+|+++.+.++|.++.
T Consensus 61 ~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 61 TPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred chHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 4455555554456889999999988888754
No 114
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=33.97 E-value=50 Score=23.17 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.3
Q ss_pred CCCccCHHHHHhhhhCCHH
Q psy13946 30 HDDRLTLEEFREGSKADPR 48 (90)
Q Consensus 30 ~DG~IS~eEFi~~~~~d~~ 48 (90)
.+|.||..||++++.+.+.
T Consensus 41 rng~IsVreFVr~La~S~~ 59 (131)
T PF00427_consen 41 RNGQISVREFVRALAKSEL 59 (131)
T ss_dssp HTTSS-HHHHHHHHHTSHH
T ss_pred HcCCCcHHHHHHHHHcCHH
Confidence 5899999999997766543
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=33.47 E-value=40 Score=22.13 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHHhhcc
Q psy13946 15 PQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLG 56 (90)
Q Consensus 15 pe~~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~L~~~ 56 (90)
.+.-+...|+.- +..-.|+.++|+..+..+|..+-||-++
T Consensus 47 ~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~lVWLP~l 86 (90)
T PF09069_consen 47 IEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQSLVWLPTL 86 (90)
T ss_dssp -HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TTTTHHHHH
T ss_pred cHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCeeeHHHHH
Confidence 466788889876 4677899999999999999887776543
No 116
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=33.47 E-value=77 Score=20.45 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHhcCCCCCCccCHHHHH-----hhhhCCH-HHHHHhhcccCCCCCCCC
Q psy13946 21 KIFDQMDKNHDDRLTLEEFR-----EGSKADP-RIVQALSLGDSSNVAPSG 65 (90)
Q Consensus 21 kiF~~mD~N~DG~IS~eEFi-----~~~~~d~-~Il~~L~~~~~~D~d~sG 65 (90)
-+.+.|+.+.||-|.++=+. +....|. .|.++|..-.-+..+..|
T Consensus 27 fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~ 77 (82)
T cd08032 27 FLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEG 77 (82)
T ss_pred HHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCC
Confidence 45678999999999987652 3444453 566677655555555544
No 117
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=32.90 E-value=89 Score=22.18 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=30.4
Q ss_pred CcccHHH--HHHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHHH
Q psy13946 11 DENTPQK--RVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQA 52 (90)
Q Consensus 11 de~tpe~--~vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~~ 52 (90)
|-++|++ +++.+++.++.++. .+|++|-++.+.+||.|...
T Consensus 188 DiDt~eD~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~p~l~~~ 230 (233)
T cd02518 188 TVDTPEDFELIKEIYEALYPKNP-DFSLEDIIELLDKNPELFEI 230 (233)
T ss_pred ecCCHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhChhHHHH
Confidence 4455654 66777887765332 38999999999999999865
No 118
>KOG2562|consensus
Probab=32.04 E-value=38 Score=28.74 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCCccCHHHHHhhhhCCHHHHH-Hhh-cccCCCCCCCCCcc
Q psy13946 19 VDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQ-ALS-LGDSSNVAPSGSSP 68 (90)
Q Consensus 19 vdkiF~~mD~N~DG~IS~eEFi~~~~~d~~Il~-~L~-~~~~~D~d~sG~i~ 68 (90)
...+|.+++.|..|.|+..-|+.-..+.-.+.. .++ ++..++...-|.+.
T Consensus 141 s~~~f~k~~~d~~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~ 192 (493)
T KOG2562|consen 141 SASTFRKIDGDDTGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLR 192 (493)
T ss_pred chhhhhhhccCcCCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCcccee
Confidence 357899999999999999999986555444332 222 35666666666554
No 119
>KOG0040|consensus
Probab=29.99 E-value=52 Score=32.38 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCccCHHHHHhhhhC-------------CHHHHHHhhcccCCCCCCCCCccc
Q psy13946 20 DKIFDQMDKNHDDRLTLEEFREGSKA-------------DPRIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 20 dkiF~~mD~N~DG~IS~eEFi~~~~~-------------d~~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
.-+|..||++++|.+++++|.-.++. +|.+-+.| +.+|-...|-|+.
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l---d~vDP~r~G~Vsl 2315 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL---DLVDPNRDGYVSL 2315 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH---HhcCCCCcCcccH
Confidence 56799999999999999999754443 34444444 3455566666653
No 120
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.56 E-value=43 Score=17.54 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=10.1
Q ss_pred CCccCHHHHHhh
Q psy13946 31 DDRLTLEEFREG 42 (90)
Q Consensus 31 DG~IS~eEFi~~ 42 (90)
.|.||-+||-+.
T Consensus 14 ~G~IseeEy~~~ 25 (31)
T PF09851_consen 14 KGEISEEEYEQK 25 (31)
T ss_pred cCCCCHHHHHHH
Confidence 699999999753
No 121
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.30 E-value=24 Score=24.88 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHhhcccCC--CCCCCCCcccccCCC--ChhhHhhhhhhhc
Q psy13946 48 RIVQALSLGDSS--NVAPSGSSPASASAA--SPLVLERDIMAER 87 (90)
Q Consensus 48 ~Il~~L~~~~~~--D~d~sG~i~~~~~~~--~~~~~~~~~~~~~ 87 (90)
..-+.++.|+.. |.-.+|.-+..+.+. ||-.+-|.|.++.
T Consensus 21 e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 21 EREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 345555555554 334566666665554 7777777777654
No 122
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=27.22 E-value=37 Score=20.03 Aligned_cols=12 Identities=50% Similarity=0.911 Sum_probs=10.5
Q ss_pred CCCccCHHHHHh
Q psy13946 30 HDDRLTLEEFRE 41 (90)
Q Consensus 30 ~DG~IS~eEFi~ 41 (90)
.+|.||.+||-+
T Consensus 20 a~GrL~~~Ef~~ 31 (53)
T PF08044_consen 20 AEGRLSLDEFDE 31 (53)
T ss_pred HCCCCCHHHHHH
Confidence 589999999965
No 123
>PF13573 SprB: SprB repeat
Probab=27.12 E-value=27 Score=18.94 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.3
Q ss_pred CCCCCcccccCCCChh
Q psy13946 62 APSGSSPASASAASPL 77 (90)
Q Consensus 62 d~sG~i~~~~~~~~~~ 77 (90)
+.+|+|.+.++|-+|-
T Consensus 12 ~~dG~i~v~~tGG~~p 27 (37)
T PF13573_consen 12 GNDGSITVTVTGGTGP 27 (37)
T ss_pred CCCeEEEEEEeCCCcC
Confidence 6789999999988763
No 124
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=26.80 E-value=32 Score=18.75 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=7.6
Q ss_pred hcCCCCCCc
Q psy13946 25 QMDKNHDDR 33 (90)
Q Consensus 25 ~mD~N~DG~ 33 (90)
+||.|+||.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 679999995
No 125
>KOG4666|consensus
Probab=26.67 E-value=44 Score=27.60 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
+....+|..+|.+++|.+.+.|+..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~ 283 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVK 283 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhh
Confidence 3445556666666666666665544
No 126
>KOG0040|consensus
Probab=25.58 E-value=80 Score=31.19 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=27.8
Q ss_pred CCC-CCcccHHHHHHHHHHhcCCCCCCccCHHHHHh
Q psy13946 7 PQS-EDENTPQKRVDKIFDQMDKNHDDRLTLEEFRE 41 (90)
Q Consensus 7 ~~p-~de~tpe~~vdkiF~~mD~N~DG~IS~eEFi~ 41 (90)
.+| .++..|+-..++++..+|.|.+|.||+.+|+.
T Consensus 2285 ~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2285 DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 354 34444555678999999999999999999986
No 127
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=24.16 E-value=67 Score=26.50 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC-CHHHHHHhhc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA-DPRIVQALSL 55 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-d~~Il~~L~~ 55 (90)
+..+..+| .+-.-..+.-|++||++.+++ +|.+......
T Consensus 288 ~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~ 327 (445)
T PF13608_consen 288 EDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEE 327 (445)
T ss_pred HHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHH
Confidence 45667778 777777899999999996555 8999888774
No 128
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=23.68 E-value=75 Score=19.99 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHH
Q psy13946 13 NTPQKRVDKIFDQMDKNHDDRLTLEEFR 40 (90)
Q Consensus 13 ~tpe~~vdkiF~~mD~N~DG~IS~eEFi 40 (90)
.....++++.+.+|| .+|++||=
T Consensus 31 ~~~r~~l~~~l~kld-----lVtREEFd 53 (79)
T PF04380_consen 31 KNIRARLQSALSKLD-----LVTREEFD 53 (79)
T ss_pred HHHHHHHHHHHHHCC-----CCcHHHHH
Confidence 445667888888887 49999994
No 129
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.31 E-value=34 Score=22.38 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=17.0
Q ss_pred HHHhcCCCCCCccCHHHHHhhhhCCHHHHH
Q psy13946 22 IFDQMDKNHDDRLTLEEFREGSKADPRIVQ 51 (90)
Q Consensus 22 iF~~mD~N~DG~IS~eEFi~~~~~d~~Il~ 51 (90)
.|+.+..+....+|.+|+++....+|.+++
T Consensus 60 ~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 60 TWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred HHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 344444432234677777777777766553
No 130
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=22.73 E-value=1.6e+02 Score=22.97 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHhhhh-CCHHHHHHhhcccCCCCCCCCC---cccccCCCChhhHh
Q psy13946 17 KRVDKIFDQMDKNHDDRLTLEEFREGSK-ADPRIVQALSLGDSSNVAPSGS---SPASASAASPLVLE 80 (90)
Q Consensus 17 ~~vdkiF~~mD~N~DG~IS~eEFi~~~~-~d~~Il~~L~~~~~~D~d~sG~---i~~~~~~~~~~~~~ 80 (90)
+-+++||+.++.| ||+++..+.-+.+- .-..+.+.+..+++...-.+-. .-.-|...+|.+++
T Consensus 183 eAv~~IL~~L~~~-egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~LG~kGt~V~~l~~~~~~ 249 (251)
T TIGR02787 183 EAVEHIFEELDGN-EGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNDKLIE 249 (251)
T ss_pred HHHHHHHHHhccc-cccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCccEeCCCChhhhh
Confidence 4578999988654 79999999977322 3446777788777765543322 34444455554443
No 131
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=21.11 E-value=91 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=18.6
Q ss_pred HHHhcCCCCCCccCHHHHHhhhhCCHHHHH
Q psy13946 22 IFDQMDKNHDDRLTLEEFREGSKADPRIVQ 51 (90)
Q Consensus 22 iF~~mD~N~DG~IS~eEFi~~~~~d~~Il~ 51 (90)
.|+.+..+. ..+|.+|+++....+|.+++
T Consensus 63 ~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 63 AFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred HHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 344444333 35778888888888887764
No 132
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.75 E-value=91 Score=21.31 Aligned_cols=31 Identities=6% Similarity=0.164 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHhcCCCCCCccCHHHHHhhh
Q psy13946 13 NTPQKRVDKIFDQMDKNHDDRLTLEEFREGS 43 (90)
Q Consensus 13 ~tpe~~vdkiF~~mD~N~DG~IS~eEFi~~~ 43 (90)
...+-.++=++.-+|..+.|+|+.-+|+.+.
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 4456667778889999999999998887653
No 133
>KOG0169|consensus
Probab=20.56 E-value=80 Score=28.22 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCCCccCHHHHHhhhhC-CH--HHHHHhhcccCCCCCCCCCccc
Q psy13946 16 QKRVDKIFDQMDKNHDDRLTLEEFREGSKA-DP--RIVQALSLGDSSNVAPSGSSPA 69 (90)
Q Consensus 16 e~~vdkiF~~mD~N~DG~IS~eEFi~~~~~-d~--~Il~~L~~~~~~D~d~sG~i~~ 69 (90)
+..+..+|+..|+|++|.+++.|-....+. +. ....+..+|..++.-.+|++..
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~ 191 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEE 191 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehH
Confidence 456788999999999999999776543332 22 2233344555555555555543
Done!