Query psy13950
Match_columns 110
No_of_seqs 121 out of 1142
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 15:46:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.9 1.4E-23 3E-28 152.5 8.8 105 1-105 222-337 (601)
2 PF00135 COesterase: Carboxyle 99.9 7E-23 1.5E-27 151.7 3.0 105 1-105 212-326 (535)
3 cd00312 Esterase_lipase Estera 99.8 2E-19 4.3E-24 133.1 8.2 105 1-105 180-295 (493)
4 COG2272 PnbA Carboxylesterase 99.7 2.1E-16 4.5E-21 115.6 6.9 101 1-105 184-293 (491)
5 KOG1516|consensus 99.4 2.5E-12 5.5E-17 96.5 7.6 105 1-105 199-323 (545)
6 PF02669 KdpC: K+-transporting 73.0 11 0.00023 25.3 4.5 49 4-52 81-151 (188)
7 COG2156 KdpC K+-transporting A 65.4 21 0.00045 23.9 4.7 51 3-53 82-154 (190)
8 PRK13996 potassium-transportin 65.3 19 0.00042 24.3 4.6 17 5-21 88-104 (197)
9 PRK00315 potassium-transportin 65.2 17 0.00036 24.5 4.2 49 4-52 82-152 (193)
10 PRK14000 potassium-transportin 64.9 17 0.00037 24.3 4.2 48 5-52 89-151 (185)
11 PRK13998 potassium-transportin 64.4 19 0.0004 24.1 4.3 50 4-53 87-151 (186)
12 PRK14001 potassium-transportin 64.0 20 0.00044 24.0 4.5 18 4-21 81-98 (189)
13 PRK13997 potassium-transportin 63.0 19 0.00042 24.2 4.2 18 4-21 83-100 (193)
14 TIGR00681 kdpC K+-transporting 62.2 20 0.00043 24.0 4.2 49 4-52 80-150 (187)
15 PRK13999 potassium-transportin 60.5 22 0.00048 24.1 4.2 48 5-52 94-161 (201)
16 PRK13995 potassium-transportin 58.9 25 0.00054 23.8 4.2 17 5-21 92-108 (203)
17 PRK14002 potassium-transportin 57.3 28 0.00061 23.3 4.2 17 4-20 77-93 (186)
18 COG2382 Fes Enterochelin ester 57.0 3.4 7.3E-05 29.6 -0.1 31 1-31 181-215 (299)
19 PRK14003 potassium-transportin 56.0 23 0.00049 23.9 3.7 48 5-52 90-155 (194)
20 KOG4627|consensus 42.0 8.5 0.00018 26.6 0.0 25 3-27 142-171 (270)
21 PF07447 VP40: Matrix protein 28.3 17 0.00037 25.3 -0.2 19 90-108 139-157 (295)
22 PF04036 DUF372: Domain of unk 26.3 59 0.0013 15.9 1.5 13 10-22 23-35 (38)
23 COG0400 Predicted esterase [Ge 26.2 18 0.0004 24.4 -0.4 28 3-30 105-136 (207)
24 KOG3824|consensus 24.9 2.2E+02 0.0048 21.2 4.8 79 20-103 254-340 (472)
25 PF14829 GPAT_N: Glycerol-3-ph 23.8 54 0.0012 18.7 1.2 12 18-29 42-53 (77)
26 COG2819 Predicted hydrolase of 23.7 11 0.00023 26.6 -1.9 30 1-30 141-174 (264)
27 PF02809 UIM: Ubiquitin intera 22.6 50 0.0011 13.2 0.7 9 17-25 6-14 (18)
28 COG5387 Chaperone required for 22.0 60 0.0013 22.7 1.5 34 37-76 109-142 (264)
29 PF03077 VacA2: Putative vacuo 21.1 41 0.00089 18.2 0.4 10 2-11 27-36 (60)
30 PF12826 HHH_2: Helix-hairpin- 21.1 1.4E+02 0.003 15.9 2.6 28 39-73 13-40 (64)
31 PRK13994 potassium-transportin 20.8 1.4E+02 0.0031 20.6 3.1 17 5-21 108-124 (222)
32 smart00726 UIM Ubiquitin-inter 20.6 59 0.0013 14.3 0.8 10 16-25 4-13 (26)
No 1
>KOG4389|consensus
Probab=99.90 E-value=1.4e-23 Score=152.51 Aligned_cols=105 Identities=27% Similarity=0.463 Sum_probs=92.1
Q ss_pred CCCCCCCcc------ccCcchhhHHHHHHhcCCCCCcccccc--CHHHHHHHHHHHcCCCCC-hHHHHHHHhcCChHHHH
Q psy13950 1 MWRDRKGAQ------ETSSIFDLFKRAILLSGSALSLWSLVT--HPLQYTLQVAQHFNCPET-DPEMSICLRNKRLSDIT 71 (110)
Q Consensus 1 ~~~~~~ga~------~sp~s~gLF~raI~~SG~~~~~~~~~~--~~~~~~~~~a~~~gc~~~-~~~~l~cLr~~~~~~l~ 71 (110)
|+|+|+||. +||.++|||||+|+|||+...+|+... .+.+++.++++.+||... ..++++|||++|++.|.
T Consensus 222 LFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~pWA~~s~~~A~~~s~~La~lvgC~~~~~~~i~~ClR~~~a~~l~ 301 (601)
T KOG4389|consen 222 LFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNNPWAIVSPGEARQRSTALANLVGCNKTNDTEIVACLRSVPAQLLS 301 (601)
T ss_pred EeccccchhhhhheecCCCchhhHHHHHhhcCCCCCCccccChHHHHHHHHHHHHHhCCCCCChHHHHHHHhcCCHHHHh
Confidence 689999987 589999999999999999999999753 468899999999999876 77899999999999999
Q ss_pred hhhhcCC--CCCCcceecccCCCCCcCHHHHHHhhc
Q psy13950 72 AVDIESP--RFKTAFGPIIDGNVIPNDPEQCMTVYR 105 (110)
Q Consensus 72 ~a~~~~~--~~~~~f~PvvDg~~lp~~P~~~~~~g~ 105 (110)
...-.+. ...++|+||+|++||+++|..++++|+
T Consensus 302 ~~~wnv~~~~l~FpfvpvvDg~Fl~~~~~~~L~~g~ 337 (601)
T KOG4389|consen 302 LNEWNVSPTPLSFPFVPVVDGDFLSDDPFALLKEGD 337 (601)
T ss_pred hhhccccCCccccceeeeeccccccCChHHHHhcCC
Confidence 7665542 345789999999999999999998875
No 2
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.86 E-value=7e-23 Score=151.66 Aligned_cols=105 Identities=30% Similarity=0.530 Sum_probs=87.5
Q ss_pred CCCCCCCcc------ccCcchhhHHHHHHhcCCCCCccccccCHHHHHHHHHHHcCCCCC-hHHHHHHHhcCChHHHHhh
Q psy13950 1 MWRDRKGAQ------ETSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPET-DPEMSICLRNKRLSDITAV 73 (110)
Q Consensus 1 ~~~~~~ga~------~sp~s~gLF~raI~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~~~-~~~~l~cLr~~~~~~l~~a 73 (110)
|+|||+||. +||.++|||||||+|||++..++.......+.++++++.+||+.. ..++++|||++|+++|+++
T Consensus 212 l~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~~~~~~~~~~~~la~~lgc~~~~~~~~l~cLR~~~~~~L~~a 291 (535)
T PF00135_consen 212 LFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWATSENPEQQAQKLAKALGCDDSDSSDILECLRSLPAEELLAA 291 (535)
T ss_dssp EEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTSSBSHHHHHHHHHHHHTTSTTSSHHHHHHHHHHS-HHHHHHH
T ss_pred eeeecccccccceeeeccccccccccccccccccccccccccccchhhhhhhhhhccccccccchhhhhhhhhccchhhh
Confidence 589999998 489999999999999999999888766567899999999999876 6689999999999999999
Q ss_pred hhcCCC--CCC-cceecccCCCCCcCHHHHHHhhc
Q psy13950 74 DIESPR--FKT-AFGPIIDGNVIPNDPEQCMTVYR 105 (110)
Q Consensus 74 ~~~~~~--~~~-~f~PvvDg~~lp~~P~~~~~~g~ 105 (110)
...... ... .|.||+||+++|++|.+++++|.
T Consensus 292 ~~~~~~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~ 326 (535)
T PF00135_consen 292 QNKLWPESGFFPPFGPVVDGDFLPDSPSELLKSGR 326 (535)
T ss_dssp HHCCSTTSSSSSSSSBBEBSSSSSS-HHHHHHTTT
T ss_pred hhcccccccccccCCceecccccccCccccccccc
Confidence 885431 222 49999999999999999999875
No 3
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.80 E-value=2e-19 Score=133.09 Aligned_cols=105 Identities=30% Similarity=0.533 Sum_probs=89.2
Q ss_pred CCCCCCCccc------cCcchhhHHHHHHhcCCCCCccccccCHHHHHHHHHHHcCCCCC-hHHHHHHHhcCChHHHHhh
Q psy13950 1 MWRDRKGAQE------TSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPET-DPEMSICLRNKRLSDITAV 73 (110)
Q Consensus 1 ~~~~~~ga~~------sp~s~gLF~raI~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~~~-~~~~l~cLr~~~~~~l~~a 73 (110)
++|+|+|+.+ +|.+++||+|+|+|||+....+.....+...++++++.+||+.. ..++++|||++++++|+++
T Consensus 180 ~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~~lgc~~~~~~~~l~cLr~~~~~~l~~a 259 (493)
T cd00312 180 IFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSPWAIQENARGRAKRLARLLGCNDTSSAELLDCLRSKSAEELLDA 259 (493)
T ss_pred EEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccCcccccccHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCHHHHHHH
Confidence 5799999885 68899999999999999887776556678888999999999765 5678999999999999998
Q ss_pred hhcCC----CCCCcceecccCCCCCcCHHHHHHhhc
Q psy13950 74 DIESP----RFKTAFGPIIDGNVIPNDPEQCMTVYR 105 (110)
Q Consensus 74 ~~~~~----~~~~~f~PvvDg~~lp~~P~~~~~~g~ 105 (110)
..... .....|.|++||.+||++|.+++++|.
T Consensus 260 ~~~~~~~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~ 295 (493)
T cd00312 260 TRKLLLFSYSPFLPFGPVVDGDFIPDDPEELIKEGK 295 (493)
T ss_pred HHhhccccccCccceeeecCCCCCCcCHHHHHhcCC
Confidence 86542 233579999999999999999999874
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.66 E-value=2.1e-16 Score=115.65 Aligned_cols=101 Identities=25% Similarity=0.366 Sum_probs=84.7
Q ss_pred CCCCCCCccc------cCcchhhHHHHHHhcCCCCCccccccCHHHHHHHHHHHcCCCCChHHHHHHHhcCChHHHHhhh
Q psy13950 1 MWRDRKGAQE------TSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVD 74 (110)
Q Consensus 1 ~~~~~~ga~~------sp~s~gLF~raI~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~~~~~~~l~cLr~~~~~~l~~a~ 74 (110)
|+|||+||.. +|.++|||||||+|||.....-. ..++...+..+++.+||+ .+.++||+.+++++|.++.
T Consensus 184 l~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~~~~s-~~~A~~~a~~f~~~lG~~---~~~~~~L~~~~~~~L~~~~ 259 (491)
T COG2272 184 LFGESAGAASILTLLAVPSAKGLFHRAIALSGAASRVTS-REEAREKAAAFARALGIP---EATLDKLRALSAEDLVKAR 259 (491)
T ss_pred EeeccchHHHHHHhhcCccchHHHHHHHHhCCCCCccCc-HHHHHHHHHHHHHHhCCC---HHHHHHHhcCCHHHHHhhh
Confidence 5799999873 79999999999999998763322 356789999999999998 3569999999999999998
Q ss_pred hcCC-C--CCCcceecccCCCCCcCHHHHHHhhc
Q psy13950 75 IESP-R--FKTAFGPIIDGNVIPNDPEQCMTVYR 105 (110)
Q Consensus 75 ~~~~-~--~~~~f~PvvDg~~lp~~P~~~~~~g~ 105 (110)
.... . ..++++|++|+.++|.+|.+.+++|.
T Consensus 260 ~~~~~~~~~~~~~~p~~~d~~lp~~P~e~~~~g~ 293 (491)
T COG2272 260 LPLIGRTFGAVPYGPVLGDSLLPRDPLEAIAQGR 293 (491)
T ss_pred hhhccccCCCcCCCCccCcccccCChhhhhhccc
Confidence 7653 1 33468999999999999999999873
No 5
>KOG1516|consensus
Probab=99.36 E-value=2.5e-12 Score=96.48 Aligned_cols=105 Identities=23% Similarity=0.375 Sum_probs=81.5
Q ss_pred CCCCCCCccc------cCcchhhHHHHHHhcCCCCCcccccc--CHHHHHHHHHHHcCCCCC-hHHHHHHHhcCChHHHH
Q psy13950 1 MWRDRKGAQE------TSSIFDLFKRAILLSGSALSLWSLVT--HPLQYTLQVAQHFNCPET-DPEMSICLRNKRLSDIT 71 (110)
Q Consensus 1 ~~~~~~ga~~------sp~s~gLF~raI~~SG~~~~~~~~~~--~~~~~~~~~a~~~gc~~~-~~~~l~cLr~~~~~~l~ 71 (110)
++||++||.. ||.+++||||+|.|||+.+++|.... .....+++++...||... ..++++|+++++.+++.
T Consensus 199 l~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (545)
T KOG1516|consen 199 LFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNALSPWAIAPIEYARFLAEELACKVGLPGEDSSSLVQCLQAAPAEELL 278 (545)
T ss_pred EEeechhHHHHHHHhcCHhhHHHHHHHHhhccccccchhcccchhhHHHHHHHhhhcCCCCCcHHHHHHHHhcCCHHHHH
Confidence 5799999984 89999999999999999999999722 245677777777777764 56789999999999999
Q ss_pred hhhhcCC------CCCCcceecccC-----CCCCcCHHHHHHhhc
Q psy13950 72 AVDIESP------RFKTAFGPIIDG-----NVIPNDPEQCMTVYR 105 (110)
Q Consensus 72 ~a~~~~~------~~~~~f~PvvDg-----~~lp~~P~~~~~~g~ 105 (110)
....... .....|.|++|+ .+.+..|.+.+....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 323 (545)
T KOG1516|consen 279 QALLKLELFDFVPSDLFAFPPVIDGSVARESFLPPVPIIVLMEAD 323 (545)
T ss_pred hhhccccccccCcccccccCCccCcccccCcccCCCHHHHHhhhc
Confidence 8765432 122568888887 467777777665543
No 6
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=72.99 E-value=11 Score=25.30 Aligned_cols=49 Identities=22% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCccccCcchhhHHHH----------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 4 DRKGAQETSSIFDLFKRA----------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra----------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
.+||.+++|.+..|-+++ +..|||.+-|.-....+.-+..++|+.-|.+
T Consensus 81 ~SggSNl~psn~~l~~~v~~~~~~~~~~~~~~~~~vP~dlvtaSgSGLDP~IS~~aA~~Qv~RVA~argl~ 151 (188)
T PF02669_consen 81 ASGGSNLGPSNPELRERVEERIAALRKENPVAPSPVPADLVTASGSGLDPHISPAAALIQVPRVAKARGLS 151 (188)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHhhcccCCCCCCHHHHhcccccCCCCcCHHHHHHHHHHHHHHhCcC
Confidence 368888888887776554 4445665544333334556667777776654
No 7
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=65.41 E-value=21 Score=23.90 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=31.9
Q ss_pred CCCCCccccCcchhhHHHH----------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCCC
Q psy13950 3 RDRKGAQETSSIFDLFKRA----------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCPE 53 (110)
Q Consensus 3 ~~~~ga~~sp~s~gLF~ra----------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~~ 53 (110)
+.|||.+++|....|-.|+ +..|||.+-|.-.+.-+..+..++++.-|.+.
T Consensus 82 ~aSggSNl~psNp~L~~rv~~~~~~lr~~~~~~~~~vP~dlvt~SgSGLDP~Isp~aA~~QvpRVA~argi~~ 154 (190)
T COG2156 82 VASGGSNLGPSNPELLERVKARVAALRAENPVNDSEVPVDLVTASGSGLDPHISPAAAAYQVPRVAKARGISE 154 (190)
T ss_pred cccCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhccccCCCCCCCHHHHHHHhHHHHHHhCCCH
Confidence 4678888888776665443 45566666554433345566677777777653
No 8
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=65.32 E-value=19 Score=24.27 Aligned_cols=17 Identities=0% Similarity=-0.173 Sum_probs=12.8
Q ss_pred CCCccccCcchhhHHHH
Q psy13950 5 RKGAQETSSIFDLFKRA 21 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra 21 (110)
+||.+++|.+..|-+++
T Consensus 88 SggSNlgpsnp~L~~~v 104 (197)
T PRK13996 88 SAPSNLSPASKEYEALV 104 (197)
T ss_pred ccccCCCCCCHHHHHHH
Confidence 78888888887776544
No 9
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=65.17 E-value=17 Score=24.47 Aligned_cols=49 Identities=20% Similarity=0.065 Sum_probs=29.0
Q ss_pred CCCCccccCcchhhHHHH----------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 4 DRKGAQETSSIFDLFKRA----------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra----------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
.+||.+++|...-|-+++ +..|||.+-|.-.+..++-+..++|+.-|.+
T Consensus 82 ~SggSNl~psnp~l~~~v~~r~~~~~~~~~~~~~~vP~DlvTaSgSGLDPhIS~~aA~~Qv~RVA~argl~ 152 (193)
T PRK00315 82 ASGGSNLAPSNPALDDAIKARVAALRAANPGASSPVPVDLVTASGSGLDPHISPAAAAYQIPRVAAARQLP 152 (193)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHhccccCCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 367778888776665433 3445555544333334556667777776665
No 10
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=64.86 E-value=17 Score=24.25 Aligned_cols=48 Identities=27% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCccccCcchhhHHHH---------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 5 RKGAQETSSIFDLFKRA---------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra---------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
+||.+++|....|-+++ +..|||.+-|.-.+..+.-+..++|+.-|.+
T Consensus 89 SggSNl~psn~~l~~~v~~r~~~~~~~vP~DlvTaSgSGLDPhISp~aA~~Qv~RVA~argls 151 (185)
T PRK14000 89 SGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITVDNAKQQVKRIAKERNID 151 (185)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCHHHHhcccccCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 67888888887776544 3456666554433334566677777776665
No 11
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=64.43 E-value=19 Score=24.12 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCCCccccCcchhhHHHH---------------HHhcCCCCCccccccCHHHHHHHHHHHcCCCC
Q psy13950 4 DRKGAQETSSIFDLFKRA---------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCPE 53 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra---------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~~ 53 (110)
.+||.+++|....|-+++ +..|||.+-|.-.+..+.-+..++|+.-|.+.
T Consensus 87 ~SggSNl~psnp~l~~~v~~r~~~~~~~vP~DlvTaSgSGLDPhISp~aA~~Qv~RVA~argl~~ 151 (186)
T PRK13998 87 SSGGSNESNGNTELIARMKHHVKFGNSNVTIDAATSSGSGLDPHITVENALKQAPRIADARHVST 151 (186)
T ss_pred cccccCCCCCCHHHHHHHHHHHHhcCCCCCHHHHhcccccCCCCCCHHHHHHHHHHHHHHhCcCH
Confidence 367888888888776644 44566665544333345666777777766653
No 12
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=63.98 E-value=20 Score=23.98 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=12.4
Q ss_pred CCCCccccCcchhhHHHH
Q psy13950 4 DRKGAQETSSIFDLFKRA 21 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra 21 (110)
.+||.+++|....|-+++
T Consensus 81 ~SggSNl~psnp~l~~~v 98 (189)
T PRK14001 81 ASSGSNLGPTNEKLLAAV 98 (189)
T ss_pred cccccCCCCCCHHHHHHH
Confidence 377888888877665543
No 13
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=63.04 E-value=19 Score=24.18 Aligned_cols=18 Identities=28% Similarity=0.111 Sum_probs=12.5
Q ss_pred CCCCccccCcchhhHHHH
Q psy13950 4 DRKGAQETSSIFDLFKRA 21 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra 21 (110)
.+||.+++|.+..|-+++
T Consensus 83 ~SggSNl~psnp~l~~~v 100 (193)
T PRK13997 83 ASGSNNYAPSNPDLEKRV 100 (193)
T ss_pred cccccCCCCCCHHHHHHH
Confidence 377888888877665543
No 14
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=62.22 E-value=20 Score=24.00 Aligned_cols=49 Identities=24% Similarity=0.153 Sum_probs=27.8
Q ss_pred CCCCccccCcchhhHHHH----------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 4 DRKGAQETSSIFDLFKRA----------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~ra----------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
.+||.+++|...-|-+++ +..|||.+-|.-.+..+.-+..++|+.-|.+
T Consensus 80 ~SggSNl~psnp~l~~~v~~r~~~~~~~~~~~~~~vP~DlvTaSgSGLDPhISp~aA~~Qv~RVA~argl~ 150 (187)
T TIGR00681 80 ASGGSNLAPSNPDLLSRIAARVEAQRLENLDAAVQVPVDLVTSSGSGLDPHISPAAAQAQFPRVAKARNIS 150 (187)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHhcccccCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 367888888877665543 3345555444332233455566666666654
No 15
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=60.54 E-value=22 Score=24.06 Aligned_cols=48 Identities=23% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCCccccCcchhhHHHH--------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 5 RKGAQETSSIFDLFKRA--------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra--------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
+||.+++|....|-+++ +..|||.+-|.-.+..+.-+..++++.-|.+
T Consensus 94 SGgSNlgpsnp~L~~~v~~r~~~~~~~~~~~~vP~DlvTaSgSGLDPhISp~aA~~Qv~RVA~argls 161 (201)
T PRK13999 94 SMGSNLGPTSKALADRVKEDVDALKAENPGAPVPVDLVTTSGSGLDPDISPEAALFQVPRVAKARGLP 161 (201)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHhcccccCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 67778888877665543 3345555444332333455556666665554
No 16
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=58.93 E-value=25 Score=23.84 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.6
Q ss_pred CCCccccCcchhhHHHH
Q psy13950 5 RKGAQETSSIFDLFKRA 21 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra 21 (110)
+||.+++|.+.-|-+++
T Consensus 92 SggSNlgpsnp~L~~~v 108 (203)
T PRK13995 92 SGSQNYAPTNPELHDRV 108 (203)
T ss_pred ccccCCCCCCHHHHHHH
Confidence 78888888887776543
No 17
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=57.33 E-value=28 Score=23.26 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=11.8
Q ss_pred CCCCccccCcchhhHHH
Q psy13950 4 DRKGAQETSSIFDLFKR 20 (110)
Q Consensus 4 ~~~ga~~sp~s~gLF~r 20 (110)
.+||.+++|.+.-|-++
T Consensus 77 ~SggSNl~psnp~L~~~ 93 (186)
T PRK14002 77 GSGGSNKGPSNPEYLAE 93 (186)
T ss_pred cccccCCCCCCHHHHHH
Confidence 47788888887766543
No 18
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=57.02 E-value=3.4 Score=29.61 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=22.6
Q ss_pred CCCCCCCcccc----CcchhhHHHHHHhcCCCCCc
Q psy13950 1 MWRDRKGAQET----SSIFDLFKRAILLSGSALSL 31 (110)
Q Consensus 1 ~~~~~~ga~~s----p~s~gLF~raI~~SG~~~~~ 31 (110)
|+|+|=|..+| -..-..|.++|++||+....
T Consensus 181 L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 181 LAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred EeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 57777777664 22346799999999998654
No 19
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=55.96 E-value=23 Score=23.87 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=28.1
Q ss_pred CCCccccCcchhhHHHH------------------HHhcCCCCCccccccCHHHHHHHHHHHcCCC
Q psy13950 5 RKGAQETSSIFDLFKRA------------------ILLSGSALSLWSLVTHPLQYTLQVAQHFNCP 52 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra------------------I~~SG~~~~~~~~~~~~~~~~~~~a~~~gc~ 52 (110)
+||.+++|.+..|-+++ +..|||.+-|.-.+..++-+..++|+.-|.+
T Consensus 90 SggSNl~psnp~l~~~v~~r~~~~~~~~~~pp~DlVTaSgSGLDPhISp~aA~~Qv~RVA~argl~ 155 (194)
T PRK14003 90 SGASNLAPSNPALIERIKEEANRLQDAGIQPTADLVYTSGSGLDPHISPEAARAQIERVAKARGLP 155 (194)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHcCCCCChhheecccccCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 78888888877765543 2235555443332333455666777766664
No 20
>KOG4627|consensus
Probab=41.99 E-value=8.5 Score=26.57 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=17.0
Q ss_pred CCCCCcccc-----CcchhhHHHHHHhcCC
Q psy13950 3 RDRKGAQET-----SSIFDLFKRAILLSGS 27 (110)
Q Consensus 3 ~~~~ga~~s-----p~s~gLF~raI~~SG~ 27 (110)
|||+||++. ..-.+-+.++|..+|.
T Consensus 142 GHSaGAHLa~qav~R~r~prI~gl~l~~Gv 171 (270)
T KOG4627|consen 142 GHSAGAHLAAQAVMRQRSPRIWGLILLCGV 171 (270)
T ss_pred ccchHHHHHHHHHHHhcCchHHHHHHHhhH
Confidence 899999973 3334456667777764
No 21
>PF07447 VP40: Matrix protein VP40; InterPro: IPR008986 Ebola virus sp. are non-segmented, negative-strand RNA viruses that causes severe haemorrhagic fever in humans with high rates of mortality. The virus matrix protein VP40 is a major structural protein that plays a central role in virus assembly and budding at the plasma membrane of infected cells. VP40 proteins associate with cellular membranes, interact with the cytoplasmic tails of glycoproteins, and bind to the ribonucleoprotein complex. The VP40 monomer consists of two domains, the N-terminal oligomerization domain and the C-terminal membrane-binding domain, connected by a flexible linker. Both the N- and C-terminal domains fold into beta sandwich structures of similar topology []. Within the N-terminal domain are two overlapping L-domains with the sequences PTAP and PPEY at residues 7 to13, which are required for efficient budding []. L-domains are thought to mediate their function in budding through their interaction with specific host cellular proteins, such as tsg101 and vps-4 []. ; PDB: 1H2D_B 1H2C_A 1ES6_A.
Probab=28.33 E-value=17 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCCCcCHHHHHHhhcccc
Q psy13950 90 GNVIPNDPEQCMTVYRDIF 108 (110)
Q Consensus 90 g~~lp~~P~~~~~~g~~~~ 108 (110)
|.=+|++|..+++.|++.|
T Consensus 139 GpGIPdHPLrlLR~GNQAF 157 (295)
T PF07447_consen 139 GPGIPDHPLRLLRIGNQAF 157 (295)
T ss_dssp S---TT-SSHHHHCSEEEE
T ss_pred CCCCCcchhHHHHhhhHHH
Confidence 4669999999999999876
No 22
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=26.29 E-value=59 Score=15.86 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.5
Q ss_pred ccCcchhhHHHHH
Q psy13950 10 ETSSIFDLFKRAI 22 (110)
Q Consensus 10 ~sp~s~gLF~raI 22 (110)
+||.+.....+||
T Consensus 23 vs~~~~~~le~ai 35 (38)
T PF04036_consen 23 VSPETAESLEKAI 35 (38)
T ss_dssp ESTTTHHHHHHHH
T ss_pred CCcchHHHHHHHH
Confidence 3444444444444
No 23
>COG0400 Predicted esterase [General function prediction only]
Probab=26.19 E-value=18 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCCCCcccc----CcchhhHHHHHHhcCCCCC
Q psy13950 3 RDRKGAQET----SSIFDLFKRAILLSGSALS 30 (110)
Q Consensus 3 ~~~~ga~~s----p~s~gLF~raI~~SG~~~~ 30 (110)
|-|.||.+. =...++|.++|++||....
T Consensus 105 GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~ 136 (207)
T COG0400 105 GFSQGANIALSLGLTLPGLFAGAILFSGMLPL 136 (207)
T ss_pred ecChHHHHHHHHHHhCchhhccchhcCCcCCC
Confidence 667788763 4456799999999997644
No 24
>KOG3824|consensus
Probab=24.90 E-value=2.2e+02 Score=21.20 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHhcCCCCCccccccCHHHHH-HHHHHHcCCCCChHHHHHHHhcCChHHHHhhhhcCC-------CCCCcceecccCC
Q psy13950 20 RAILLSGSALSLWSLVTHPLQYT-LQVAQHFNCPETDPEMSICLRNKRLSDITAVDIESP-------RFKTAFGPIIDGN 91 (110)
Q Consensus 20 raI~~SG~~~~~~~~~~~~~~~~-~~~a~~~gc~~~~~~~l~cLr~~~~~~l~~a~~~~~-------~~~~~f~PvvDg~ 91 (110)
|+|++++-....-+..+..+-+. ..-.+.++|+- +...-+++.+++++....+- .+.+.-.-|.=|.
T Consensus 254 R~ILEtrmavpGKSi~EhNEviGMdaAmkyiN~sL-----vski~~itI~DiLE~HRRVLG~vDPvEaGrfRttQVyVG~ 328 (472)
T KOG3824|consen 254 RAILETRMAVPGKSIREHNEVIGMDAAMKYINCSL-----VSKIHDITIDDILEMHRRVLGNVDPVEAGRFRTTQVYVGR 328 (472)
T ss_pred HHHHhhcccCCCcChHHhhhhhhHHHHHHHhhhHh-----hhhccceeHHHHHHHHHHHhcCCCcccccceeeeeEEecC
Confidence 78999987664444332222232 33456777753 56666788888888776531 1112222344578
Q ss_pred CCCcCHHHHHHh
Q psy13950 92 VIPNDPEQCMTV 103 (110)
Q Consensus 92 ~lp~~P~~~~~~ 103 (110)
.+|-+|.+...+
T Consensus 329 hiPp~P~dv~~q 340 (472)
T KOG3824|consen 329 HIPPSPEDVMEQ 340 (472)
T ss_pred CCCCChHHHHHH
Confidence 889888877654
No 25
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=23.84 E-value=54 Score=18.67 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.4
Q ss_pred HHHHHHhcCCCC
Q psy13950 18 FKRAILLSGSAL 29 (110)
Q Consensus 18 F~raI~~SG~~~ 29 (110)
|+.|+++||.+.
T Consensus 42 Yk~AVl~Sg~p~ 53 (77)
T PF14829_consen 42 YKNAVLQSGDPN 53 (77)
T ss_dssp HHHHHHHTT-TT
T ss_pred HHHHHHhCCCCC
Confidence 789999999763
No 26
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=23.71 E-value=11 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCCCCCCcccc---Ccch-hhHHHHHHhcCCCCC
Q psy13950 1 MWRDRKGAQET---SSIF-DLFKRAILLSGSALS 30 (110)
Q Consensus 1 ~~~~~~ga~~s---p~s~-gLF~raI~~SG~~~~ 30 (110)
|||||=|..++ =... ..|++.++.|++.++
T Consensus 141 i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw 174 (264)
T COG2819 141 IIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW 174 (264)
T ss_pred eeeecchhHHHHHHHhcCcchhceeeeecchhhh
Confidence 69999998875 3344 789999999998764
No 27
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=22.57 E-value=50 Score=13.20 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=6.4
Q ss_pred hHHHHHHhc
Q psy13950 17 LFKRAILLS 25 (110)
Q Consensus 17 LF~raI~~S 25 (110)
-+++||.+|
T Consensus 6 ~L~~Al~~S 14 (18)
T PF02809_consen 6 DLQRALEMS 14 (18)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 467788777
No 28
>COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=60 Score=22.75 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHcCCCCChHHHHHHHhcCChHHHHhhhhc
Q psy13950 37 HPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVDIE 76 (110)
Q Consensus 37 ~~~~~~~~~a~~~gc~~~~~~~l~cLr~~~~~~l~~a~~~ 76 (110)
+......++.+.++-+ +=|.|.-+.++|++.+..
T Consensus 109 ~~~~v~~~ilrf~~tD------lLcYra~sp~eLv~rQ~e 142 (264)
T COG5387 109 DSQAVFEQILRFLDTD------LLCYRAESPFELVERQNE 142 (264)
T ss_pred cHHHHHHHHHHHccCC------eeEecCCCHHHHHHHHHh
Confidence 4456667777776643 448999999999988864
No 29
>PF03077 VacA2: Putative vacuolating cytotoxin; InterPro: IPR004311 Proteins containing this domain include a number of Helicobacter pylori outer membrane proteins with multiple copies of this small conserved region.
Probab=21.13 E-value=41 Score=18.21 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=7.9
Q ss_pred CCCCCCcccc
Q psy13950 2 WRDRKGAQET 11 (110)
Q Consensus 2 ~~~~~ga~~s 11 (110)
|+.+|||+++
T Consensus 27 ~~tGGgA~l~ 36 (60)
T PF03077_consen 27 WGTGGGATLN 36 (60)
T ss_pred cccCCCeEEE
Confidence 7788888875
No 30
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=21.12 E-value=1.4e+02 Score=15.89 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHhcCChHHHHhh
Q psy13950 39 LQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAV 73 (110)
Q Consensus 39 ~~~~~~~a~~~gc~~~~~~~l~cLr~~~~~~l~~a 73 (110)
...++.++++.| + ++.+++.+.++|.+.
T Consensus 13 ~~~ak~L~~~f~--s-----l~~l~~a~~e~L~~i 40 (64)
T PF12826_consen 13 EKTAKLLAKHFG--S-----LEALMNASVEELSAI 40 (64)
T ss_dssp HHHHHHHHHCCS--C-----HHHHCC--HHHHCTS
T ss_pred HHHHHHHHHHcC--C-----HHHHHHcCHHHHhcc
Confidence 467778888877 2 777888888887654
No 31
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=20.83 E-value=1.4e+02 Score=20.56 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=12.2
Q ss_pred CCCccccCcchhhHHHH
Q psy13950 5 RKGAQETSSIFDLFKRA 21 (110)
Q Consensus 5 ~~ga~~sp~s~gLF~ra 21 (110)
+||.+++|....|.+++
T Consensus 108 SggSNlgpsnp~L~~~v 124 (222)
T PRK13994 108 SGATNRSADNEELIQWV 124 (222)
T ss_pred ccccCCCCCCHHHHHHH
Confidence 67788888877776544
No 32
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=20.63 E-value=59 Score=14.31 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=7.2
Q ss_pred hhHHHHHHhc
Q psy13950 16 DLFKRAILLS 25 (110)
Q Consensus 16 gLF~raI~~S 25 (110)
..+++||.+|
T Consensus 4 e~Lq~Ai~lS 13 (26)
T smart00726 4 EDLQLALELS 13 (26)
T ss_pred HHHHHHHHHh
Confidence 3467888887
Done!