RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13950
(110 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 80.5 bits (199), Expect = 4e-19
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 16 DLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSI--CLRNKRLSDITAV 73
LF RAIL+SGSALS W++ ++P Q ++A+ CP D + CLR K ++
Sbjct: 207 GLFHRAILMSGSALSPWAITSNPRQRAKRLAKLLGCPGEDSSAELLECLRKKSAEELLDA 266
Query: 74 DIESPRFK--TAFGPIIDGNVIPNDPEQ 99
+ FGP++DG+ +P DPE+
Sbjct: 267 QLLLLEEVGFFPFGPVVDGDFLPKDPEE 294
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 68.9 bits (169), Expect = 4e-15
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 16 DLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSI-CLRNK---RLSDIT 71
LF RAI SGSALS W++ + ++A+ C +T + CLR+K L D T
Sbjct: 201 GLFHRAISQSGSALSPWAIQENARGRAKRLARLLGCNDTSSAELLDCLRSKSAEELLDAT 260
Query: 72 A-VDIESPRFKTAFGPIIDGNVIPNDPEQ 99
+ + S FGP++DG+ IP+DPE+
Sbjct: 261 RKLLLFSYSPFLPFGPVVDGDFIPDDPEE 289
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 35.9 bits (83), Expect = 0.002
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQYTLQ---VAQHFNCPETDPEMSICLRNKRLSDITAV 73
LF RAI LSG+A S VT + + A+ PE + LR D+
Sbjct: 206 LFHRAIALSGAA----SRVTSREEAREKAAAFARALGIPEATLD---KLRALSAEDLVKA 258
Query: 74 ---DIESPRFKTAFGPIIDGNVIPNDP 97
I +GP++ +++P DP
Sbjct: 259 RLPLIGRTFGAVPYGPVLGDSLLPRDP 285
>gnl|CDD|222998 PHA03140, PHA03140, helicase-primase primase subunit; Provisional.
Length = 772
Score = 28.4 bits (63), Expect = 0.70
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 5 RKGAQETSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDP 56
R+ A S +F+L + + SG + V L + F+C TD
Sbjct: 228 RERAGRLSDVFNLREYRVCTSGGR----ATVVRVL-----LPVGFDCLVTDA 270
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 26.3 bits (58), Expect = 4.3
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQYTLQVAQH--FNCPETDPEMSICLRNKRLSDITAVD 74
L+ + L A+ LW ++ L Y + +Q N + +M R + VD
Sbjct: 83 LYPESAELYEHAMKLWEGLSQDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVD 142
Query: 75 IE--SPRFKTAFGPIID 89
E SP PI+D
Sbjct: 143 AELLSPEQVRRVIPILD 159
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 26.1 bits (57), Expect = 4.7
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 57 EMSICLRNKRLSDITAVDIESPRFKTAFGPIIDGNVIPNDPEQCMT 102
E S R + D S FK A + D DPE+ M
Sbjct: 429 ERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIML 474
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 26.0 bits (57), Expect = 4.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 74 DIESPRFKTAFGPIIDGNVIPNDP 97
D++ FGP+ +GN P DP
Sbjct: 94 DLDPAEGPLRFGPLANGNYQPGDP 117
>gnl|CDD|107251 cd01538, PBP1_ABC_xylose_binding, Periplasmic xylose-binding
component of the ABC-type transport systems that belong
to a family of pentose/hexose sugar-binding proteins of
the type I periplasmic binding protein (PBP1)
superfamily. Periplasmic xylose-binding component of
the ABC-type transport systems that belong to a family
of pentose/hexose sugar-binding proteins of the type I
periplasmic binding protein (PBP1) superfamily, which
consists of two alpha/beta globular domains connected by
a three-stranded hinge. This Venus flytrap-like domain
undergoes a transition from an open to a closed
conformational state upon ligand binding. Moreover, the
periplasmic xylose-binding protein is homologous to the
ligand-binding domain of eukaryotic receptors such as
glutamate receptor (GluR) and DNA-binding
transcriptional repressors such as LacI and GalR.
Length = 288
Score = 25.6 bits (57), Expect = 6.9
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 87 IIDGNVIPNDPEQCMTVYRDI 107
I++G Q MTVY+DI
Sbjct: 233 IVEG-------TQTMTVYKDI 246
>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16.
Length = 82
Score = 24.6 bits (54), Expect = 7.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 6 KGAQETSSIFDLFKRAILLS 25
KGAQ T +++D+ K+A +
Sbjct: 59 KGAQPTETVYDILKKAEVFK 78
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 25.3 bits (56), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 9 QETSSIFDLFKRAILLSG 26
Q S +F LF R +LLS
Sbjct: 202 QPRSDLFRLFDRILLLSS 219
>gnl|CDD|178701 PLN03156, PLN03156, GDSL esterase/lipase; Provisional.
Length = 351
Score = 25.1 bits (55), Expect = 9.3
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 22 ILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMS-ICLRNKRLSDITAVDIESPRF 80
++ S ++ +P Y +V C EM +C RN + T D + F
Sbjct: 268 LVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRN---NPFTCSDADKYVF 324
Query: 81 KTAFGP------IIDGNVIP 94
+F P II +V+
Sbjct: 325 WDSFHPTEKTNQIIANHVVK 344
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,602,709
Number of extensions: 453110
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 19
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)