RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13950
(110 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 97.9 bits (244), Expect = 2e-25
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 13 SIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDP-EMSICLRNKRLSDIT 71
S LF+RAI SG+ALS W++ P +Y +A C +D E+ CL+ K ++
Sbjct: 234 SEKGLFQRAIAQSGTALSSWAVSFQPAKYARILATKVGCNVSDTVELVECLQKKPYKELV 293
Query: 72 AVDIESPRFKTAFGPIIDGNVIPNDPEQ 99
D++ R+ AFGP+IDG+VIP+DP+
Sbjct: 294 DQDVQPARYHIAFGPVIDGDVIPDDPQI 321
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 86.3 bits (214), Expect = 3e-21
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 16 DLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDP-EMSICLRNKRLSDITAV- 73
L KRAI SG L W++ PL + ++A+ CP D +M+ CL+ +T
Sbjct: 211 GLIKRAISQSGVGLCPWAIQQDPLFWAKRIAEKVGCPVDDTSKMAGCLKITDPRALTLAY 270
Query: 74 ------DIESPRFKTAFGPIIDGNVIPNDPEQ 99
+F P+IDG+ IP+DP
Sbjct: 271 KLPLGSTEYPKLHYLSFVPVIDGDFIPDDPVN 302
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 85.5 bits (212), Expect = 4e-21
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 16 DLFKRAILLSGSALSLWSLVT--HPLQYTLQVAQHFNCPETDPEMSI-CLRNKRLSDITA 72
DLF+RAIL SGS W+ V+ + +++ ++ NC E I CLR K+ ++
Sbjct: 217 DLFRRAILQSGSPNCPWASVSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELID 276
Query: 73 VDIE----SPRFKTAFGPIIDGNVIPNDPEQ 99
V+ F+ +F P+IDG P E
Sbjct: 277 VEWNVLPFDSIFRFSFVPVIDGEFFPTSLES 307
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 84.0 bits (208), Expect = 2e-20
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 16 DLFKRAILLSGSALSLWSLVT--HPLQYTLQVAQHFNCPETDPEMSI-CLRNKRLSDITA 72
LF RAIL SGS + W++ + TL +A+ C + I CLRNK +I
Sbjct: 215 SLFTRAILQSGSFNAPWAVTSLYEARNRTLNLAKLTGCSRENETEIIKCLRNKDPQEILL 274
Query: 73 VDIE----SPRFKTAFGPIIDGNVIPNDPEQ 99
+ FGP +DG+ + + P+
Sbjct: 275 NEAFVVPYGTPLSVNFGPTVDGDFLTDMPDI 305
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 80.9 bits (200), Expect = 2e-19
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 17 LFKRAILLSGSALSLWSLVT--HPLQYTLQVAQHFNCP-----ETDPEMSICLRNKRLSD 69
LF RA+L SG+ W+ V+ + +A+ CP D E+ CLR + D
Sbjct: 221 LFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGCPPGGAGGNDTELIACLRTRPAQD 280
Query: 70 ITAVDIE----SPRFKTAFGPIIDGNVIPNDPEQ 99
+ + F+ +F P++DG+ + + PE
Sbjct: 281 LVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEA 314
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 80.6 bits (199), Expect = 2e-19
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 16 DLFKRAILLSGSALSLWSLVTH--PLQYTLQVAQHFNCP----ETDPEMSI-CLRNKRLS 68
L KR ++ SG+ + WS +T ++ + NC +T+P + C+R+
Sbjct: 255 GLVKRGMMQSGTMNAPWSHMTSEKAVEIGKALINDCNCNASMLKTNPAHVMSCMRSVDAK 314
Query: 69 DITAVDIESPR--FKTAFGPIIDGNVIPNDPEQ 99
I+ S P IDG +P DP
Sbjct: 315 TISVQQWNSYSGILSFPSAPTIDGAFLPADPMT 347
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 75.5 bits (186), Expect = 1e-17
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 17 LFKRAILLSGSALSLWSLVTH-PLQYTLQVAQHFNCPETDPEMSI-CLRNKRLSDITAVD 74
LF RAI SG AL+ + Q+A C T + + CLR K ++
Sbjct: 221 LFHRAISESGVALTSVLVKKGDVKPLAEQIAITAGCKTTTSAVMVHCLRQKTEEELLETT 280
Query: 75 IESPR-----------FKTAFGPIIDGNVIPNDPEQ 99
++ + G +IDG ++ PE+
Sbjct: 281 LKMKFLSLDLQGDPRESQPLLGTVIDGMLLLKTPEE 316
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 69.7 bits (171), Expect = 2e-15
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQ--YTLQVAQHFNCPETDP-EMSICLRNKRLSDITAV 73
LF+RAIL+SG++ S + + TDP E+ L +
Sbjct: 222 LFRRAILMSGTSSSAFFTTNPVFAQYINKLFVTNIGITATDPEEIHQKLIEMPAEKLNEA 281
Query: 74 DIESPRFK--TAFGPIIDGN------VIPNDPEQ 99
+ T F P+++ ++ DPEQ
Sbjct: 282 NRFLLEQFGLTTFFPVVESPINGVTTILDGDPEQ 315
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 66.9 bits (164), Expect = 1e-14
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVDIE 76
LF+RA+L SGS L + T ++ D E L + ++ +
Sbjct: 212 LFRRAMLQSGSGSLLLRSPETAMAMTERILDKAGIRPGDRE---RLLSIPAEELLRAALS 268
Query: 77 SPRFKTAFGPIIDGNVIPNDPEQ 99
+GP++DG V+ P +
Sbjct: 269 LGPG-VMYGPVVDGRVLRRHPIE 290
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 63.1 bits (154), Expect = 3e-13
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVDIE 76
LF AI+ S + ++ Q+ + C + CLR + ++ I +
Sbjct: 214 LFIGAIVESSFWPTQRTVSEMEFQFE-RFVNDTGCSSARDSLE-CLREQDIATIQKGNTG 271
Query: 77 SPRFKT--------AFGPIIDGNVIPNDPEQ 99
SP F P+ DG+++P++
Sbjct: 272 SPFPGGSSSPLPDWYFLPVTDGSLVPDELYN 302
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 62.5 bits (152), Expect = 5e-13
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 17 LFKRAILLSGSALSLWSL-VTHPLQYTLQVAQHFNCPETDPEMSI--CLRNKRLSDITAV 73
LF AIL SG L P + AQ+ C + CLR+K S +
Sbjct: 241 LFHSAILQSGGPLPYHDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDA 300
Query: 74 DIESP--------RFKTAFGPIIDGNVIPNDPEQ 99
FGP DGN+IP+ +
Sbjct: 301 QNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYE 334
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 62.5 bits (152), Expect = 5e-13
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 17 LFKRAILLSGSALSLWSL-VTHPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVDI 75
LF+ I+ SG+ + + T+ + C +++ CLR+ +
Sbjct: 233 LFRAGIMQSGAMVPSDPVDGTYGNEIYDLFVSSAGCGSASDKLA-CLRSASSDTLLDATN 291
Query: 76 ESP------RFKTAFGPIIDGNVIPNDPEQ 99
+P + ++ P DG I +D +
Sbjct: 292 NTPGFLAYSSLRLSYLPRPDGKNITDDMYK 321
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 62.3 bits (152), Expect = 7e-13
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 17 LFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSICLRNK------RLSDI 70
LF++AI+ SG++ ++ Q E+ + L + +D
Sbjct: 207 LFQKAIMESGASRTMTK--EQAASTAAAFLQVLGINESQLD---RLHTVAAEDLLKAADQ 261
Query: 71 TAVDIESPRFKTAFGPIIDGNVIPNDPEQ 99
+ + F+ F P +D +P +PE+
Sbjct: 262 LRIAEKENIFQLFFQPALDPKTLPEEPEK 290
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.095
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 27/72 (37%)
Query: 20 RAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETD----PEMSICLRNKRLSDITAVDI 75
+ +++SG SL+ L + + D P S +R
Sbjct: 375 KNLVVSGPPQSLYGLNLT-------LRKAKAPSGLDQSRIP-FS-----ER--------- 412
Query: 76 ESPRFKTAFGPI 87
+F F P+
Sbjct: 413 -KLKFSNRFLPV 423
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 28.7 bits (64), Expect = 0.35
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 44 QVAQHFNCPETDPEMSICLRNK-RLSDI-TAVDIESPRFKTA 83
+ + + + R+K ++ D ++S + K
Sbjct: 119 KACERLGLRGAGVQAAENARDKNKMRDAFNKAGVKSIKNKRV 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.42
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 26/51 (50%)
Query: 10 ETSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFNCPETDPEMSI 60
E ++ K+ L S L L++ ++ P ++I
Sbjct: 18 EKQAL----KK---LQAS-LKLYA------------------DDSAPALAI 42
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase,
family F/10 of glycosyl hydrolases,
glycosyltransferase; 1.40A {Clostridium thermocellum}
SCOP: c.1.8.3
Length = 347
Score = 26.6 bits (59), Expect = 1.7
Identities = 4/43 (9%), Positives = 15/43 (34%)
Query: 8 AQETSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFN 50
+++ D + + G+ ++ Y + + F+
Sbjct: 22 TISGNALRDYAEARGIKIGTCVNYPFYNNSDPTYNSILQREFS 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.1
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 28/104 (26%)
Query: 16 DLFKRAILLSGSALSLWSLVTHPLQYTLQVA------------QHFNCPETDPEMSICLR 63
L + + L L T+P + ++ +H NC + + L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 64 NKRLSDITAVDIESPRFKTAFGPIIDGNVIPND---PEQCMTVY 104
+E ++ F +V P P +++
Sbjct: 365 V----------LEPAEYRKMF---DRLSVFPPSAHIPTILLSLI 395
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 26.5 bits (59), Expect = 2.3
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 50 NCPE-TDPEMSICLRNKRLSDITAVD 74
N P M C RN + IT +D
Sbjct: 437 NAPIPEPRNMQFCQRNPQPHIITILD 462
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase,
hemicellulose, xylan degradation; HET: XYS AHR; 1.43A
{Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A*
1ur2_A* 2cnc_A*
Length = 378
Score = 25.3 bits (55), Expect = 4.6
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 8 AQETSSIFDLFKRAILLSGSALSLWSLVTHPLQYTLQVAQHFN 50
A E + + +K L+ G+AL+ + +A+ FN
Sbjct: 21 AAEQTGLKSAYKDNFLI-GAALNATIASGADERLNTLIAKEFN 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 24.8 bits (53), Expect = 8.6
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 23 LLSGSA---LSLWSLVTHPLQYTLQVAQHFNCPETDPEMSICLRNKRLSDITAVDIESPR 79
L+ +A + + SL + + T+ V +TD + L + + DI+ +
Sbjct: 72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131
Query: 80 FKT 82
+
Sbjct: 132 LSS 134
>2qtq_A Transcriptional regulator, TETR family; transcription regulator,
DNA/RNA-binding 3-helical bundle FO turn helix motif,
HTH motif; HET: MSE; 1.85A {Novosphingobium
aromaticivorans} PDB: 2rha_A*
Length = 213
Score = 24.6 bits (54), Expect = 9.2
Identities = 2/31 (6%), Positives = 8/31 (25%)
Query: 28 ALSLWSLVTHPLQYTLQVAQHFNCPETDPEM 58
++ L + F+ ++
Sbjct: 164 YFTVTGAADRFFSARLVLKHCFDQDTLTEQL 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,703,747
Number of extensions: 86346
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 24
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)