RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13951
(130 letters)
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 72.4 bits (176), Expect = 1e-16
Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 10 SPDSSRTYRRHSVLVIIHGESYSFGSGNIYDGFVLASYANMVVVTFNFRLGILGFLRPGV 69
+P R V+V IHG G+ + YDG LA++ N+VVVT +RLGI GF
Sbjct: 103 TPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFF-STG 161
Query: 70 GSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSPL 123
+ N+G +DQVAAL+W++DNI FGG+P SVT+ G G S++ L+LSPL
Sbjct: 162 DEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPL 215
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 69.0 bits (167), Expect = 2e-15
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 22 VLVIIHGESYSFGSGN--IYDGFVLASYANMVVVTFNFRLGILGFLRPG------VGSST 73
+L+ I+G + GS IY+ ++A+ N++V +F +R+G GFL
Sbjct: 141 ILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEA 200
Query: 74 VTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
N G+ DQ A++W+KDN FGG+P +TL G G++S+N ++SP
Sbjct: 201 PGNVGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSP 249
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 63.2 bits (152), Expect = 2e-13
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 10 SPDSSRTYRRHSVLVIIHGESYSFGSGNIYDG-----FVLASYANMVVVTFNFRLGILGF 64
P ++ + V+V I+G ++ +GS Y G + +V V+ N+R G GF
Sbjct: 112 RPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGF 171
Query: 65 LR-PGVGSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSPL 123
L + + TN G+ DQ L+W+ DNI +FGGDP V + G GA S+ +++
Sbjct: 172 LGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYG 231
Query: 124 LSPSY 128
+Y
Sbjct: 232 GDNTY 236
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 62.5 bits (150), Expect = 4e-13
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 13 SSRTYRRHSVLVIIHGESYSFGSGN--IYDGFVLASYANMVVVTFNFRLGILGFLRPGVG 70
R VL+ I+G + G+ + +YDG LA V+V+ N+R+G GFL
Sbjct: 105 YPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGS 164
Query: 71 SSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLML 120
N G++DQ ALQW+++NI FGGDP SVTL G GAAS+ +L
Sbjct: 165 REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHIL 214
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 61.0 bits (146), Expect = 1e-12
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 10 SPDSSRTYRRHSVLVIIHGESYSFGSGNIYDG--FVLASYANMVVVTFNFRLGILGFLR- 66
P ++ + + V + I G Y+ S Y+G + AS +V VTFN+R+G LGFL
Sbjct: 87 KPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLAS 146
Query: 67 PGVGSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
V + N G++DQ AL+W+K IE FGGDP + + G GA S+ + + +
Sbjct: 147 EKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAY 202
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 60.9 bits (146), Expect = 1e-12
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 10 SPDSSRTYRRHSVLVIIHGESYSFGSGNIYDGFVLASYA-----NMVVVTFNFRLGILGF 64
P ++ V++ I G + GS I+ + + + ++ V N+R+ GF
Sbjct: 104 RPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGF 163
Query: 65 L-RPGVGSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
L + + N G+ DQ +QW+ DNI FGGDP+ VT+ G G+ S+ ++
Sbjct: 164 LAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWN 222
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 54.3 bits (129), Expect = 3e-10
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 12 DSSRTYRRHSVLVIIHGESYSFGSGN--------IYDGFVLASYANMVVVTFNFRLGILG 63
V++ I+G ++ G+ +YDG +A+ N++VVTFN+R+G LG
Sbjct: 90 GRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLG 149
Query: 64 FLRPGVGSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLML 120
F S+ N+G+ DQ A+ W+K NIE FGGDP +TL G G AS++ L
Sbjct: 150 F-LSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTL 205
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 53.9 bits (128), Expect = 4e-10
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 18 RRHSVLVIIHGESYSFGSGNIY--DGFVLASYANMVVVTFNFRLGILGFL-RPGVGSSTV 74
+ V+V IHG ++ G+G+ DG LA+ ++VVT N+RLG GFL +
Sbjct: 94 QNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYS 153
Query: 75 TNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
N G++DQ AAL+W+++NI FGGDP +VT+ G G SI L+ P
Sbjct: 154 DNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMP 201
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 52.8 bits (125), Expect = 9e-10
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 16 TYRRHSVLVIIHGESYSFGSGN--IYDGFVLASYANMVVVTFNFRLGILGFLRPGVGSST 73
+ +V+V I+G + GS +Y+G LA +V+V+ ++R+G GFL
Sbjct: 102 RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEA 161
Query: 74 VTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
N G++DQ ALQW+ DNI+ FGGDP +VT+ G G AS+ +LSP
Sbjct: 162 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSP 210
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 35.1 bits (79), Expect = 0.001
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 15 RTYR---RHSVLVIIHGESYSFGSGNIYDGFVL--ASYANMVVVTFNFRLGILGFLRPGV 69
R Y+ VLV HG + S +D A +N VV+ ++RL
Sbjct: 71 RVYQQKPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHKF---- 126
Query: 70 GSSTVTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGH 108
+ D A +W+ +N E DP+ + + G
Sbjct: 127 ------PAAVYDCYDATKWVAENAEELRIDPSKIFVGGD 159
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 33.7 bits (75), Expect = 0.003
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 22 VLVIIHGESYSFGSGNIYDGFVLASYANMVVVTFNFRLGILGFLRPGVGSSTVTNFGIMD 81
VL+ IHG ++ G+ D F + + N + T + D
Sbjct: 80 VLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVE--------YRLAPETTFPGPVND 131
Query: 82 QVAALQWIKDNIEHFGGDPTSVTLMGHGTGAASINFLMLSP 122
AAL +I + E G DP+ + + G G +L
Sbjct: 132 CYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKA 172
>g1h8d.1 b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [TaxId:
9606]}
Length = 289
Score = 25.4 bits (54), Expect = 2.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 60 GILGFLRPGVGSSTVTNFGIMDQVAA-LQWIKDNIEHFGGDPTSVTLM 106
GI+ + G G +G V +WI+ I+ FG SV ++
Sbjct: 245 GIVSW---GEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGCS--SVLIV 287
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 24.9 bits (52), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 104 TLMGHGTGAASINFLMLSPLLSPSYD 129
T+ GH I L ++PL+S SYD
Sbjct: 8 TISGH---NKGITALTVNPLISGSYD 30
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 23.5 bits (51), Expect = 3.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 82 QVAALQWIKDNIEHFGGDPTSVTLMGH 108
Q I+D+I G PT +
Sbjct: 7 QQEVFDLIRDHISQTGMPPTRAEIAQR 33
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma
constant domain 2, CH2-gamma {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 103
Score = 23.8 bits (51), Expect = 6.0
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 74 VTNFGIMDQVAALQWIKDNIEHFGGDPTSVTLMGHGT 110
V + D W D++E + + T
Sbjct: 25 VVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNST 61
>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 225
Score = 23.8 bits (50), Expect = 7.1
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 10 SPDSSRTYRRHSVLVIIHGESYSFGSGNIYDGFVLASYAN----------MVVVTFNFRL 59
+ T V + + G I +G V A +N +V
Sbjct: 132 QENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPLVCDGMLQ 191
Query: 60 GILGFLRPGVGSSTVTNFGIMDQVAA-LQWIKDNIE 94
GI + G G+ ++ WIK ++
Sbjct: 192 GITSWGSDPCGKPEK--PGVYTKICRYTTWIKKTMD 225
>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
[TaxId: 1931]}
Length = 258
Score = 23.9 bits (51), Expect = 7.3
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 1 FQPNLPEALSPDSSRTYRRHSVLVIIHGESYSFGSGNIYDGFVLASYAN 49
+++ + HS ++++ G+S G N + L +
Sbjct: 146 NITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHP 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.417
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,635
Number of extensions: 22329
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 20
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)