BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13952
         (445 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
 pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
          Length = 915

 Score = 33.9 bits (76), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 96  SWYFLNVFGLRSIYALVLGENNAADQSRQFQDQMSGAAVQMPVDPKAAFKAEWEALEIYQ 155
           S    ++ G   + A+ LGE    ++ R +QD++S AAV  P         E  AL  + 
Sbjct: 652 SRLMRSLSGEGGMAAVALGEAAVRERLRPWQDRLSVAAVNGP--RSVVVSGEPGALRAFS 709

Query: 156 HQSALEGLAAEMIEVDMTDPSMMTEMLKGNL 186
              A EG+    I+VD    S   E ++  L
Sbjct: 710 EDCAAEGIRVRDIDVDYASHSPQIERVREEL 740



 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 371 SWYFLNVFGLRSIYALVLGENNAADQSRQFQDQMSGAAVQMPVDPKAAFKAEWEALEIYQ 430
           S    ++ G   + A+ LGE    ++ R +QD++S AAV  P         E  AL  + 
Sbjct: 652 SRLMRSLSGEGGMAAVALGEAAVRERLRPWQDRLSVAAVNGP--RSVVVSGEPGALRAFS 709

Query: 431 HQSALEGLAAEMIDF 445
              A EG+    ID 
Sbjct: 710 EDCAAEGIRVRDIDV 724


>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
           Eya2 Eya Domain
          Length = 559

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 201 WMFSGFVTTKVPFPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLTQK-----RT 255
           W+ + +V  +      LR +P+   GKY  R  F + R  ++ EE  Y   +K     R 
Sbjct: 457 WLKAHYVEAE-----KLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLRE 511

Query: 256 APASNPMTDPSMMTEM 271
             A NP   P    E+
Sbjct: 512 WYAHNPYPSPREKREL 527


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,065,084
Number of Sequences: 62578
Number of extensions: 514195
Number of successful extensions: 1166
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 3
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)