Query psy13952
Match_columns 445
No_of_seqs 239 out of 357
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 15:49:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3188|consensus 100.0 4.7E-80 1E-84 580.9 13.9 190 214-444 52-243 (246)
2 KOG3188|consensus 100.0 1.6E-70 3.4E-75 516.6 11.0 170 1-171 74-245 (246)
3 PF01956 DUF106: Integral memb 100.0 6.9E-31 1.5E-35 234.8 10.0 118 214-392 51-168 (168)
4 PF01956 DUF106: Integral memb 100.0 2.4E-29 5.3E-34 224.9 8.9 85 31-117 84-168 (168)
5 KOG3312|consensus 98.5 4.9E-07 1.1E-11 83.9 8.1 82 34-118 85-167 (186)
6 KOG3312|consensus 83.2 5.6 0.00012 38.0 7.7 76 273-391 89-165 (186)
7 COG1422 Predicted membrane pro 77.8 8.2 0.00018 37.8 7.1 76 35-115 116-197 (201)
8 PF01397 Terpene_synth: Terpen 31.4 22 0.00047 33.8 0.9 34 213-251 91-124 (183)
9 COG1422 Predicted membrane pro 27.3 1.1E+02 0.0024 30.2 4.9 20 370-389 177-196 (201)
10 cd00684 Terpene_cyclase_plant_ 18.5 1E+02 0.0023 33.4 3.1 34 212-249 98-131 (542)
No 1
>KOG3188|consensus
Probab=100.00 E-value=4.7e-80 Score=580.93 Aligned_cols=190 Identities=57% Similarity=1.023 Sum_probs=182.8
Q ss_pred hhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccccccCCCCC--CCCCCCCchHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy13952 214 PLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLTQKRTAP--ASNPMTDPSMMTEMLKGNLTNVLPMIVIGGWINW 291 (445)
Q Consensus 214 ~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~~~~~~~~~--~~npmtDPs~m~~mmKgn~~~~~P~~vi~~wIn~ 291 (445)
-.++||+.||+||++|+++||.+||+||+++|+|||++.|+.++ +++|++||+|||||||||+.|+||||+|||||||
T Consensus 52 q~l~rAr~Lr~ng~~l~~~Sf~aRk~yl~~~e~g~l~~~k~~~~~~~~~~~~DpsmlmdmmKgNm~~viPqtii~~WiN~ 131 (246)
T KOG3188|consen 52 QYLIRARLLRENGNFLPPQSFAARKEYLNNEETGYLKKAKQQAAGEAPPPFNDPSMLMDMMKGNMANVIPQTIIGGWINW 131 (246)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhhcccccccccccccccCCCCCCCCCHHHHHHHHhhhHHHHhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998877654 7789999999999999999999999999999999
Q ss_pred HhhhceeecccccccccchhhhhhcccccccccccccccCCccccccccchhhhcccCCCcCCCCccccCCCccchhhhh
Q psy13952 292 MFSGFVTTKVPFPLTLRFKPMLQRGWINWMFSGFVTTKVPFPLTLRFKPMLQRDILGNATFSPTGIELLSLDPAWVSSAS 371 (445)
Q Consensus 292 fFsGFV~~KvPFPLT~rFK~MLQr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~l~~LD~~wVSS~S 371 (445)
||||||++|||||||+|||+|||| ||++.|||++||||+|
T Consensus 132 fFSGFv~~kvPFPLTlrFK~MlQ~----------------------------------------Gi~l~~LDv~wVSS~S 171 (246)
T KOG3188|consen 132 FFSGFVTTKVPFPLTLRFKSMLQR----------------------------------------GIDLQDLDVSWVSSAS 171 (246)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHc----------------------------------------CchhhhcchhHhhhhH
Confidence 999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhhHHHHHHHhCCcchhhhHHHHHhhccCCCCCCCCCHHHHHHHHHHhhccccccccccchHHhhhc
Q psy13952 372 WYFLNVFGLRSIYALVLGENNAADQSRQFQDQMSGAAVQMPVDPKAAFKAEWEALEIYQHQSALEGLAAEMID 444 (445)
Q Consensus 372 WYFLn~fGL~~iy~L~lg~~naad~~~~~~~qm~g~~~~~~~d~~k~fkae~e~L~i~~h~~~l~~~e~~~l~ 444 (445)
|||||+|||||||+|+|||+|||||++.+++ |.|.++++|+|+.||||+|||+|+|++|||+|.++|+|++.
T Consensus 172 WYFLnvfGLrsiysLiLG~~Naadq~~~~~~-M~G~~~~~p~d~~ka~~~e~e~lqi~~h~~al~~ve~~~~a 243 (246)
T KOG3188|consen 172 WYFLNVFGLRSIYSLILGEENAADQTQAMMD-MTGFAMAMPQDASKAFKAEWEALQIIQHEWALIDVEKRLLA 243 (246)
T ss_pred HHHHHHhhhHHHHHHHhcccccccHHHHHHH-hcccccCCccchHHHHHhHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999999999877 88999999999999999999999999999999999999974
No 2
>KOG3188|consensus
Probab=100.00 E-value=1.6e-70 Score=516.56 Aligned_cols=170 Identities=62% Similarity=1.071 Sum_probs=160.2
Q ss_pred CccccccccccccccccCCCC--CCCCCCCCchHHHHHHhhhhhhHHHHHHHHHHHHHhhccceeeeecCCChhhhhHHh
Q psy13952 1 MRRYYFNDEEVGYFLTQKRTA--PASNPMTDPSMMTEMLKGNLTNVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKPML 78 (445)
Q Consensus 1 ~RK~yf~~~e~G~lk~~k~~~--~p~NPmtDPs~Mm~MMKgNm~~mIPq~vIm~WIN~FFSGFVv~KLPFPLT~rFK~ML 78 (445)
+||+||+++|+|||++.|++. ++++||+||++|||||||||.|+||||+||+|||+||||||++|||||||.|||+||
T Consensus 74 aRk~yl~~~e~g~l~~~k~~~~~~~~~~~~DpsmlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~Ml 153 (246)
T KOG3188|consen 74 ARKEYLNNEETGYLKKAKQQAAGEAPPPFNDPSMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSML 153 (246)
T ss_pred HHHHHhhcccccccccccccccCCCCCCCCCHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 599999999999998876543 357889999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCchhhhhhHHHHHHHhhhHHHHHHHhCCcchhhhhHHHHHhccCCCCCCCCCHHHHHHHHHHhhccccccc
Q psy13952 79 QRGIELLSLDPAWVSSASWYFLNVFGLRSIYALVLGENNAADQSRQFQDQMSGAAVQMPVDPKAAFKAEWEALEIYQHQS 158 (445)
Q Consensus 79 QRGIel~dLDvswVSSlSWYFLnlFGLr~Vy~LlLG~dnaad~~~~mq~qm~g~~~~~~~D~~K~FkaE~EnLei~~He~ 158 (445)
||||++.||||+||||+||||||+|||||||+||||++|+|||++.|++ |+|.++++++|+.|+|++|||+|++++|+|
T Consensus 154 Q~Gi~l~~LDv~wVSS~SWYFLnvfGLrsiysLiLG~~Naadq~~~~~~-M~G~~~~~p~d~~ka~~~e~e~lqi~~h~~ 232 (246)
T KOG3188|consen 154 QRGIDLQDLDVSWVSSASWYFLNVFGLRSIYSLILGEENAADQTQAMMD-MTGFAMAMPQDASKAFKAEWEALQIIQHEW 232 (246)
T ss_pred HcCchhhhcchhHhhhhHHHHHHHhhhHHHHHHHhcccccccHHHHHHH-hcccccCCccchHHHHHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988765 888777788999999999999999999999
Q ss_pred ccccHHHHHHhhc
Q psy13952 159 ALEGLAAEMIEVD 171 (445)
Q Consensus 159 ~Ld~iE~RLL~~~ 171 (445)
+|.++|+|++..+
T Consensus 233 al~~ve~~~~a~~ 245 (246)
T KOG3188|consen 233 ALIDVEKRLLAQF 245 (246)
T ss_pred hhhhHHHHHHHhh
Confidence 9999999999754
No 3
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=99.97 E-value=6.9e-31 Score=234.84 Aligned_cols=118 Identities=42% Similarity=0.757 Sum_probs=112.1
Q ss_pred hhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccccccCCCCCCCCCCCCchHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q psy13952 214 PLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLTQKRTAPASNPMTDPSMMTEMLKGNLTNVLPMIVIGGWINWMF 293 (445)
Q Consensus 214 ~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~~~~~~~~~~~npmtDPs~m~~mmKgn~~~~~P~~vi~~wIn~fF 293 (445)
-+..|++.++.++..++.++|+.|+.++++.+.+. |++|||+|+.+++|+++|++|||+||
T Consensus 51 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~~~mK~~~~~~v~~i~i~~wi~~~f 111 (168)
T PF01956_consen 51 EFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM-------------------MMMMMKPMFVTMVPQIPIFYWINYFF 111 (168)
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999999999865554 89999999999999999999999999
Q ss_pred hhceeecccccccccchhhhhhcccccccccccccccCCccccccccchhhhcccCCCcCCCCccccCCCccchhhhhHH
Q psy13952 294 SGFVTTKVPFPLTLRFKPMLQRGWINWMFSGFVTTKVPFPLTLRFKPMLQRDILGNATFSPTGIELLSLDPAWVSSASWY 373 (445)
Q Consensus 294 sGFV~~KvPFPLT~rFK~MLQr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~l~~LD~~wVSS~SWY 373 (445)
+|||++|+|||||.+||.|+|| |+ +++|++||||+|||
T Consensus 112 ~g~vv~klPFpl~~~f~~~~qr----------------------------------------gl--~~~d~~~~s~i~wY 149 (168)
T PF01956_consen 112 SGFVVAKLPFPLTGRFKSMLQR----------------------------------------GL--EGLDVSYVSSISWY 149 (168)
T ss_pred hhcceEEeeccccHHHhHHhhc----------------------------------------CC--CCCcccHhHHHHHH
Confidence 9999999999999999999999 99 99999999999999
Q ss_pred HHHHhhhHHHHHHHhCCcc
Q psy13952 374 FLNVFGLRSIYALVLGENN 392 (445)
Q Consensus 374 FLn~fGL~~iy~L~lg~~n 392 (445)
|||.||+|++++++||++|
T Consensus 150 fL~s~~~~~vi~k~lg~~n 168 (168)
T PF01956_consen 150 FLCSFGLRQVIRKLLGENN 168 (168)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999987
No 4
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=99.96 E-value=2.4e-29 Score=224.89 Aligned_cols=85 Identities=56% Similarity=0.946 Sum_probs=82.7
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHhhccceeeeecCCChhhhhHHhhccccCCCCCchhhhhhHHHHHHHhhhHHHHH
Q psy13952 31 SMMTEMLKGNLTNVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRGIELLSLDPAWVSSASWYFLNVFGLRSIYA 110 (445)
Q Consensus 31 s~Mm~MMKgNm~~mIPq~vIm~WIN~FFSGFVv~KLPFPLT~rFK~MLQRGIel~dLDvswVSSlSWYFLnlFGLr~Vy~ 110 (445)
.+|++|||+|+.++||+++|++|||+||+|||++|+|||||.+||.|+|||+ +++|++||||+||||||.||+|++++
T Consensus 84 ~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl--~~~d~~~~s~i~wYfL~s~~~~~vi~ 161 (168)
T PF01956_consen 84 EMMMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGL--EGLDVSYVSSISWYFLCSFGLRQVIR 161 (168)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCC--CCCcccHhHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhCCcc
Q psy13952 111 LVLGENN 117 (445)
Q Consensus 111 LlLG~dn 117 (445)
++||++|
T Consensus 162 k~lg~~n 168 (168)
T PF01956_consen 162 KLLGENN 168 (168)
T ss_pred HHhCCCC
Confidence 9999986
No 5
>KOG3312|consensus
Probab=98.47 E-value=4.9e-07 Score=83.89 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=75.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhccceeeeecCCChhhhhHHhhccccCCCC-CchhhhhhHHHHHHHhhhHHHHHHH
Q psy13952 34 TEMLKGNLTNVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRGIELLSL-DPAWVSSASWYFLNVFGLRSIYALV 112 (445)
Q Consensus 34 m~MMKgNm~~mIPq~vIm~WIN~FFSGFVv~KLPFPLT~rFK~MLQRGIel~dL-DvswVSSlSWYFLnlFGLr~Vy~Ll 112 (445)
+=-||.-++.-+.-+++++-.|..|.|-||+||||-...--+.|.||++-..|. |||++ ..|.||-..+|...+.+
T Consensus 85 l~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~TDCSfi---FLYiLCtmsiRqNlQK~ 161 (186)
T KOG3312|consen 85 LFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDMTDCSFI---FLYILCTMSIRQNLQKI 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCccchHHH---HHHHHHHHHHHHHHHHH
Confidence 445788888888899999999999999999999998888899999999999998 99998 99999999999999999
Q ss_pred hCCcch
Q psy13952 113 LGENNA 118 (445)
Q Consensus 113 LG~dna 118 (445)
||-...
T Consensus 162 LGfaPs 167 (186)
T KOG3312|consen 162 LGFAPS 167 (186)
T ss_pred hCcCCc
Confidence 998543
No 6
>KOG3312|consensus
Probab=83.15 E-value=5.6 Score=37.96 Aligned_cols=76 Identities=28% Similarity=0.444 Sum_probs=51.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhceeecccc-cccccchhhhhhcccccccccccccccCCccccccccchhhhcccCCC
Q psy13952 273 KGNLTNVLPMIVIGGWINWMFSGFVTTKVPF-PLTLRFKPMLQRGWINWMFSGFVTTKVPFPLTLRFKPMLQRDILGNAT 351 (445)
Q Consensus 273 Kgn~~~~~P~~vi~~wIn~fFsGFV~~KvPF-PLT~rFK~MLQr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
|.-.+--+--+++++-.|..|-|=|++|+|| |++. .|- +-.|.+.|.
T Consensus 89 Ksmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~-----iqg-------------------------lSHRnL~Gd-- 136 (186)
T KOG3312|consen 89 KSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISI-----IQG-------------------------LSHRNLKGD-- 136 (186)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHH-----Hhc-------------------------ccccCCCCC--
Confidence 3333344456788999999999999999999 7653 232 222333332
Q ss_pred cCCCCccccCCCccchhhhhHHHHHHhhhHHHHHHHhCCc
Q psy13952 352 FSPTGIELLSLDPAWVSSASWYFLNVFGLRSIYALVLGEN 391 (445)
Q Consensus 352 ~~~~Gi~l~~LD~~wVSS~SWYFLn~fGL~~iy~L~lg~~ 391 (445)
|..=-|=+--|.||-..+|-=.+-+||=.
T Consensus 137 -----------D~TDCSfiFLYiLCtmsiRqNlQK~LGfa 165 (186)
T KOG3312|consen 137 -----------DMTDCSFIFLYILCTMSIRQNLQKILGFA 165 (186)
T ss_pred -----------CccchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 22223446678888888999899999874
No 7
>COG1422 Predicted membrane protein [Function unknown]
Probab=77.84 E-value=8.2 Score=37.81 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=52.4
Q ss_pred HHHhhhh----hhHHHHHHHHHHHHHhhccceeeeec--CCChhhhhHHhhccccCCCCCchhhhhhHHHHHHHhhhHHH
Q psy13952 35 EMLKGNL----TNVLPMIVIGGWINWMFSGFVTTKVP--FPLTLRFKPMLQRGIELLSLDPAWVSSASWYFLNVFGLRSI 108 (445)
Q Consensus 35 ~MMKgNm----~~mIPq~vIm~WIN~FFSGFVv~KLP--FPLT~rFK~MLQRGIel~dLDvswVSSlSWYFLnlFGLr~V 108 (445)
+|||.++ .-+++.+.+..|+-++-++--..+-| +-+..-|-.+.+.++ ..--.-|+ -|||||-+..+.+
T Consensus 116 elmk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gWi---~WYfLcS~~vs~i 190 (201)
T COG1422 116 ELMKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAV--FGDFLGWI---GWYFLCSFVVSQI 190 (201)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccc--cccchHHH---HHHHHHHHHHHHH
Confidence 4556554 44567888889999988766554444 223344556666666 22234677 9999999999999
Q ss_pred HHHHhCC
Q psy13952 109 YALVLGE 115 (445)
Q Consensus 109 y~LlLG~ 115 (445)
.+.+++-
T Consensus 191 lrk~l~i 197 (201)
T COG1422 191 LRKVLNI 197 (201)
T ss_pred HHHHHhc
Confidence 9999864
No 8
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=31.36 E-value=22 Score=33.83 Aligned_cols=34 Identities=32% Similarity=0.647 Sum_probs=22.6
Q ss_pred hhhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccccc
Q psy13952 213 FPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLT 251 (445)
Q Consensus 213 ~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~~~ 251 (445)
.-+.+|+++||++|.++|+.-|.. |.+++++ |+.
T Consensus 91 ~~~AL~FRLLRqhGy~VS~DvF~~----F~d~~g~-F~~ 124 (183)
T PF01397_consen 91 YTTALRFRLLRQHGYYVSSDVFNK----FKDEKGN-FKE 124 (183)
T ss_dssp HHHHHHHHHHHHTT----GGGGGG----GBETTSS-BSG
T ss_pred hHHHHHHHHHHHcCCcccHHHHhC----cccCCCc-cch
Confidence 457899999999999999998863 5555444 654
No 9
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.28 E-value=1.1e+02 Score=30.18 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=17.5
Q ss_pred hhHHHHHHhhhHHHHHHHhC
Q psy13952 370 ASWYFLNVFGLRSIYALVLG 389 (445)
Q Consensus 370 ~SWYFLn~fGL~~iy~L~lg 389 (445)
+-|||||-+....|.+-+++
T Consensus 177 i~WYfLcS~~vs~ilrk~l~ 196 (201)
T COG1422 177 IGWYFLCSFVVSQILRKVLN 196 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999888875
No 10
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=18.45 E-value=1e+02 Score=33.41 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=26.0
Q ss_pred ChhhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccc
Q psy13952 212 PFPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYF 249 (445)
Q Consensus 212 ~~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~ 249 (445)
-.-+.+++++||++|..+|.+.|.. |.++++.|.
T Consensus 98 l~~~al~FRlLR~~Gy~vs~dvf~~----F~~~~g~f~ 131 (542)
T cd00684 98 LYTTALGFRLLRQHGYNVSSDVFKK----FKDEDGKFK 131 (542)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHhh----hcCCCCCcC
Confidence 3567899999999999999999875 554444443
Done!