Query psy13952
Match_columns 445
No_of_seqs 239 out of 357
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 15:49:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0c_A Aminoacyl-tRNA syntheta 13.9 38 0.0013 37.3 -0.0 16 84-101 495-510 (878)
2 2ong_A 4S-limonene synthase; m 11.6 82 0.0028 32.9 1.6 33 213-249 99-131 (543)
3 2j5c_A 1,8-cineole synthase; t 9.7 1.1E+02 0.0036 32.4 1.6 29 214-246 127-155 (569)
4 4arc_A Leucine--tRNA ligase; l 7.7 1.1E+02 0.0038 33.9 0.9 12 365-377 512-523 (880)
5 1n1b_A (+)-bornyl diphosphate 7.3 1.3E+02 0.0045 31.5 1.2 30 213-246 102-131 (549)
6 3m00_A Aristolochene synthase; 6.5 1.5E+02 0.0053 31.2 1.2 26 211-236 105-130 (550)
7 3g4d_A (+)-delta-cadinene synt 6.4 1.6E+02 0.0053 31.2 1.2 25 212-236 111-135 (554)
8 3vg8_G Hypothetical protein TT 6.3 1.4E+02 0.0049 26.0 0.6 15 179-193 4-18 (116)
9 3n0f_A Isoprene synthase; terp 6.2 1.6E+02 0.0056 31.0 1.2 25 212-236 108-132 (555)
10 1nd7_A WW domain-containing pr 5.0 84 0.0029 31.2 -1.8 32 65-97 132-166 (374)
No 1
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=13.89 E-value=38 Score=37.33 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=12.1
Q ss_pred CCCCCchhhhhhHHHHHH
Q psy13952 84 LLSLDPAWVSSASWYFLN 101 (445)
Q Consensus 84 l~dLDvswVSSlSWYFLn 101 (445)
+..|| .|++| ||||+.
T Consensus 495 tDtmD-twfdS-sw~~~~ 510 (878)
T 2v0c_A 495 TDTMD-TFFDS-SWYYLR 510 (878)
T ss_dssp CCEEC-HHHHH-TSHHHH
T ss_pred ccccc-ccccc-cchhhh
Confidence 45556 59999 899984
No 2
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=11.56 E-value=82 Score=32.87 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=25.0
Q ss_pred hhhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccc
Q psy13952 213 FPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYF 249 (445)
Q Consensus 213 ~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~ 249 (445)
.-|.+|+++||++|..+|++.|.. |.++++.+.
T Consensus 99 ~~~al~FRlLR~hGy~vs~dvf~~----Fk~~~g~F~ 131 (543)
T 2ong_A 99 YSTSLAFRLLREHGFQVAQEVFDS----FKNEEGEFK 131 (543)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGG----GBCTTSSBC
T ss_pred HHHHHHHHHHHHcCCCccHHHHhc----ccCCCCCcc
Confidence 357899999999999999998864 555443333
No 3
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=9.65 E-value=1.1e+02 Score=32.37 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=23.8
Q ss_pred hhHHhHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q psy13952 214 PLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEV 246 (445)
Q Consensus 214 ~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~ 246 (445)
-|.+|+++||++|..+|++.|.. |.++++
T Consensus 127 ~~al~FRlLR~hGy~Vs~dvF~~----Fkd~~G 155 (569)
T 2j5c_A 127 STALRFRLLRQYDFSVSQEVFDC----FKNAKG 155 (569)
T ss_dssp HHHHHHHHHHHTTCCCCGGGGGG----GBCSSS
T ss_pred hhhHHhHHHHhcCCCcCHHHHhc----ccCCCC
Confidence 57899999999999999998864 555444
No 4
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=7.75 E-value=1.1e+02 Score=33.94 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=9.8
Q ss_pred cchhhhhHHHHHH
Q psy13952 365 AWVSSASWYFLNV 377 (445)
Q Consensus 365 ~wVSS~SWYFLn~ 377 (445)
.|++| ||||+-+
T Consensus 512 tw~dS-swy~~r~ 523 (880)
T 4arc_A 512 TFMES-SWYYARY 523 (880)
T ss_dssp TTTGG-GTHHHHT
T ss_pred CcccC-cHHHHhh
Confidence 69999 7999753
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=7.35 E-value=1.3e+02 Score=31.46 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=24.2
Q ss_pred hhhHHhHHHHhhcCCCCCHHHHHHHHHHhhcccc
Q psy13952 213 FPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEV 246 (445)
Q Consensus 213 ~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~ 246 (445)
.-|.+|+++||++|..+|++.|.. |.++++
T Consensus 102 ~~~al~FRlLR~hGy~Vs~dvf~~----Fk~~~g 131 (549)
T 1n1b_A 102 YFTALGFRLLRQHGFNISQDVFNC----FKNEKG 131 (549)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGG----GBCTTS
T ss_pred hhchhhhhHHHhcCCCcCHHHHhh----ccCCCC
Confidence 357899999999999999998864 555444
No 6
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=6.50 E-value=1.5e+02 Score=31.24 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.9
Q ss_pred cChhhHHhHHHHhhcCCCCCHHHHHH
Q psy13952 211 VPFPLTLRFKPMLQRGKYLTRSAFQM 236 (445)
Q Consensus 211 ~~~~~~~R~~~lr~~g~~l~~~aF~~ 236 (445)
--.-+.+|+++||++|..+|++.|..
T Consensus 105 dl~~~al~FRLLR~hGy~VS~dvf~~ 130 (550)
T 3m00_A 105 DLCTSALQFRLLRQHGFNISPEIFSK 130 (550)
T ss_dssp SHHHHHHHHHHHHHTTCCCCGGGGGG
T ss_pred CHHHHHHHHHHHHhcCCCCChHHhhh
Confidence 34568899999999999999988864
No 7
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=6.45 E-value=1.6e+02 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=21.6
Q ss_pred ChhhHHhHHHHhhcCCCCCHHHHHH
Q psy13952 212 PFPLTLRFKPMLQRGKYLTRSAFQM 236 (445)
Q Consensus 212 ~~~~~~R~~~lr~~g~~l~~~aF~~ 236 (445)
-.-+.+|+++||++|..+|++.|..
T Consensus 111 l~~~al~FRlLR~hGy~VS~dvf~~ 135 (554)
T 3g4d_A 111 LYTTSIRFRLLREHGYNVSCDVFNK 135 (554)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGGG
T ss_pred HHHHHHHHHHHHhcCCCCChhHHhh
Confidence 4568899999999999999988864
No 8
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=6.28 E-value=1.4e+02 Score=25.98 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=9.0
Q ss_pred HHhhhccccccchhh
Q psy13952 179 TEMLKGNLTNVLPMI 193 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~ 193 (445)
.|.|||||-|++|-+
T Consensus 4 ~~~~~~~lp~fiPGm 18 (116)
T 3vg8_G 4 SEALKGALPNFIPGL 18 (116)
T ss_dssp -----CCCCCCBTTT
T ss_pred hHhhhccCccccccc
Confidence 588999999999964
No 9
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=6.17 E-value=1.6e+02 Score=31.02 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred ChhhHHhHHHHhhcCCCCCHHHHHH
Q psy13952 212 PFPLTLRFKPMLQRGKYLTRSAFQM 236 (445)
Q Consensus 212 ~~~~~~R~~~lr~~g~~l~~~aF~~ 236 (445)
-.-+.+|+++||++|..+|++.|..
T Consensus 108 L~~~Al~FRLLR~hGy~VS~dvF~~ 132 (555)
T 3n0f_A 108 LHATALSFRLLRQHGFEVSQEAFSG 132 (555)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGGG
T ss_pred HHHHHHHHHHHHhcCCCcChHHHhc
Confidence 3567899999999999999988864
No 10
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=5.04 E-value=84 Score=31.16 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=23.5
Q ss_pred eecCCChhhhhHHhhccccC---CCCCchhhhhhHH
Q psy13952 65 KVPFPLTLRFKPMLQRGIEL---LSLDPAWVSSASW 97 (445)
Q Consensus 65 KLPFPLT~rFK~MLQRGIel---~dLDvswVSSlSW 97 (445)
-+|||+ .-+|.+|.+-+.+ .++|..+..|+-|
T Consensus 132 d~~f~~-~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~ 166 (374)
T 1nd7_A 132 DTGFSL-PFYKRMLSKKLTIKDLESIDTEFYNSLIW 166 (374)
T ss_dssp CCCCCH-HHHHHHTTCCCCHHHHHTTCHHHHHHHHH
T ss_pred CCcCCH-HHHHHHhCCCCCHHHHHHhhHHHHHhhhh
Confidence 367775 4689999887754 4558888888766
Done!