Query psy13952
Match_columns 445
No_of_seqs 239 out of 357
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 15:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13952.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13952hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n1ba1 a.102.4.1 (A:64-270) ( 33.7 7.7 0.00056 34.2 1.8 36 212-251 87-122 (207)
2 d5easa1 a.102.4.1 (A:24-220) 5 21.4 16 0.0012 31.8 1.5 34 212-250 81-114 (197)
3 d1e0ca1 c.46.1.2 (A:1-135) Sul 7.9 60 0.0044 23.9 1.1 26 187-214 108-134 (135)
4 d1vi0a2 a.121.1.1 (A:78-194) H 4.8 2.4E+02 0.018 19.8 3.0 39 72-115 51-94 (117)
5 d2cqna1 a.159.2.1 (A:743-806) 3.8 1.9E+02 0.014 21.1 1.6 21 72-92 6-26 (64)
6 d1u7ba1 d.131.1.2 (A:1-126) Pr 3.2 64 0.0047 24.9 -1.7 21 348-368 26-46 (126)
7 d1v6ga2 g.39.1.3 (A:42-81) Act 3.1 1.4E+02 0.01 20.0 0.2 11 63-73 5-15 (40)
8 d1q90d_ f.32.1.1 (D:) Subunit 2.8 1.4E+02 0.01 24.7 -0.1 13 371-383 75-88 (156)
9 d1iz5a1 d.131.1.2 (A:2-120) Pr 2.8 86 0.0062 23.9 -1.4 20 349-368 27-46 (119)
10 d1jb0f_ f.23.16.1 (F:) Subunit 2.7 1.8E+02 0.013 24.1 0.5 33 175-207 46-85 (141)
No 1
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}
Probab=33.67 E-value=7.7 Score=34.17 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.2
Q ss_pred ChhhHHhHHHHhhcCCCCCHHHHHHHHHHhhccccccccc
Q psy13952 212 PFPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLT 251 (445)
Q Consensus 212 ~~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~~~ 251 (445)
..-+.+|+++||++|..+|...|.. |.+++++-|+.
T Consensus 87 L~~~AL~FRLLRqhGy~VS~dvF~~----F~d~~g~~fk~ 122 (207)
T d1n1ba1 87 LYFTALGFRLLRQHGFNISQDVFNC----FKNEKGIDFKA 122 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGGG----GBCTTSSSBCG
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH----hccCCCCchhh
Confidence 3567899999999999999999964 66665556653
No 2
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=21.41 E-value=16 Score=31.83 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=26.5
Q ss_pred ChhhHHhHHHHhhcCCCCCHHHHHHHHHHhhcccccccc
Q psy13952 212 PFPLTLRFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFL 250 (445)
Q Consensus 212 ~~~~~~R~~~lr~~g~~l~~~aF~~Rk~y~~~~~~g~~~ 250 (445)
..-+.+|+++||++|..+|...|.. |.+ +.|.|+
T Consensus 81 l~~~AL~FRLLRqhGy~Vs~dvF~~----Fkd-~~G~f~ 114 (197)
T d5easa1 81 LCTSALQFRLLRQHGFNISPEIFSK----FQD-ENGKFK 114 (197)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGGG----GBC-TTSSBC
T ss_pred HHHHHHHHHHHHHcCcccCHHHHhh----hcc-CCCCcc
Confidence 3467899999999999999999864 555 445554
No 3
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=7.87 E-value=60 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=20.3
Q ss_pred cccchhhhhhhhhhhhhhcc-cccccChh
Q psy13952 187 TNVLPMIVIGGWINWMFSGF-VTTKVPFP 214 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 214 (445)
.|| -++=|||-.|--.|+ ++|.+|.|
T Consensus 108 ~~V--~~l~GG~~~W~~~g~p~~~~~p~P 134 (135)
T d1e0ca1 108 QRY--HYLNGGLTAWLAEDRPLSRELPAP 134 (135)
T ss_dssp CCE--EEETTHHHHHHHTTCCCBCCCCCC
T ss_pred CCE--EEecChHHHHHHCCCCCCCCCCCC
Confidence 465 366799999998887 77778876
No 4
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=4.82 E-value=2.4e+02 Score=19.77 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=25.0
Q ss_pred hhhhHHhhccccC----CCCCchhhhhhHHHHHHHhhhHH-HHHHHhCC
Q psy13952 72 LRFKPMLQRGIEL----LSLDPAWVSSASWYFLNVFGLRS-IYALVLGE 115 (445)
Q Consensus 72 ~rFK~MLQRGIel----~dLDvswVSSlSWYFLnlFGLr~-Vy~LlLG~ 115 (445)
..+++.+++|++- +|+|+..+.++-+-. +++ +++.++.+
T Consensus 51 ~~~~~ii~~g~~~G~ir~d~d~~~~a~~i~g~-----i~~~~~~w~~~~ 94 (117)
T d1vi0a2 51 NILDGILTEGIQSGEIKEGLDVRLARQMIFGT-----IDETVTTWVMND 94 (117)
T ss_dssp HHHHHHHHHHHHTTCBCTTCCHHHHHHHHHHH-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH-----HHHHHHHHHhcC
Confidence 4678889999864 789998885543322 344 35556543
No 5
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.80 E-value=1.9e+02 Score=21.08 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=15.3
Q ss_pred hhhhHHhhccccCCCCCchhh
Q psy13952 72 LRFKPMLQRGIELLSLDPAWV 92 (445)
Q Consensus 72 ~rFK~MLQRGIel~dLDvswV 92 (445)
..||.||..-...-|.+.+|=
T Consensus 6 ~aFknmLk~~~Ppi~~~s~We 26 (64)
T d2cqna1 6 SAFKSMLKQAAPPIELDAVWE 26 (64)
T ss_dssp HHHHHHHHTCSSCCCTTCCHH
T ss_pred HHHHHHHHHcCCCCCCcCcHH
Confidence 469999977666666677774
No 6
>d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.23 E-value=64 Score=24.92 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=17.8
Q ss_pred cCCCcCCCCccccCCCccchh
Q psy13952 348 GNATFSPTGIELLSLDPAWVS 368 (445)
Q Consensus 348 ~~~~~~~~Gi~l~~LD~~wVS 368 (445)
.|.+|++.||.+..+|.+-|+
T Consensus 26 ~~~~~~~~Gi~iq~mD~shv~ 46 (126)
T d1u7ba1 26 ACWDISSSGVNLQSMDSSHVS 46 (126)
T ss_dssp EEEEEETTEEEEEEECTTSSE
T ss_pred EEEEEcCCeEEEEEECCCcEE
Confidence 356789999999999998776
No 7
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.06 E-value=1.4e+02 Score=20.05 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=8.1
Q ss_pred eeeecCCChhh
Q psy13952 63 TTKVPFPLTLR 73 (445)
Q Consensus 63 v~KLPFPLT~r 73 (445)
+.|.|||.-.|
T Consensus 5 vCr~pFP~GDR 15 (40)
T d1v6ga2 5 VCRLPFPPGDR 15 (40)
T ss_dssp SSCCCCCSSSC
T ss_pred ccCCCCCCCCe
Confidence 56788887666
No 8
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.79 E-value=1.4e+02 Score=24.65 Aligned_cols=13 Identities=54% Similarity=1.242 Sum_probs=10.0
Q ss_pred hHHHHHHhh-hHHH
Q psy13952 371 SWYFLNVFG-LRSI 383 (445)
Q Consensus 371 SWYFLn~fG-L~~i 383 (445)
=||||-++. ||+|
T Consensus 75 EWYFL~~yaiLR~i 88 (156)
T d1q90d_ 75 EWYFYPVFQILRVV 88 (156)
T ss_dssp CGGGHHHHHHHHHC
T ss_pred chhhHHHHHHHHhC
Confidence 399999888 6664
No 9
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.78 E-value=86 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.9
Q ss_pred CCCcCCCCccccCCCccchh
Q psy13952 349 NATFSPTGIELLSLDPAWVS 368 (445)
Q Consensus 349 ~~~~~~~Gi~l~~LD~~wVS 368 (445)
|..|++.||.+..+|.+-|+
T Consensus 27 ~l~~~~~Gi~iq~mD~shv~ 46 (119)
T d1iz5a1 27 AFKVTEDGISMRAMDPSRVV 46 (119)
T ss_dssp EEEECSSEEEEEEECTTSSE
T ss_pred EEEEecCeEEEEEeCCCcEE
Confidence 45688999999999998775
No 10
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=2.70 E-value=1.8e+02 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.774 Sum_probs=21.6
Q ss_pred ChhhHHhhhccccc----cch---hhhhhhhhhhhhhccc
Q psy13952 175 PSMMTEMLKGNLTN----VLP---MIVIGGWINWMFSGFV 207 (445)
Q Consensus 175 ~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~ 207 (445)
.+++.-...|++.. ++| .+-|.|||-|.--.++
T Consensus 46 DGLPHLIvdG~~~HaGef~iPg~lFLYIAGwIGWaGR~YL 85 (141)
T d1jb0f_ 46 DGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYL 85 (141)
T ss_dssp TSSBCBCCSSCGGGTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeecCCCcccchhhhHHHHHHHHHhhhhhhhhHHHH
Confidence 56666666666654 345 3568999999765554
Done!