RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13952
(445 letters)
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 116 bits (294), Expect = 4e-31
Identities = 48/87 (55%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 31 SMMTEMLKGNLTNVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRGIELLSLDPA 90
MM +M+K N ++P I+I GWIN FSGFV K+PFPLT RFK MLQRG++ LD
Sbjct: 84 EMMMDMMKPNFAIMIPQILIFGWINSFFSGFVVAKLPFPLTGRFKGMLQRGVD--GLDVT 141
Query: 91 WVSSASWYFLNVFGLRSIYALVLGENN 117
VSS SWYFL FGLR + +LG N
Sbjct: 142 DVSSISWYFLCSFGLRQVIQKLLGFAN 168
Score = 100 bits (250), Expect = 7e-25
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 61/175 (34%)
Query: 218 RFKPMLQRGKYLTRSAFQMRRYYFNDEEVGYFLTQKRTAPASNPMTDPSMMTEMLKGNLT 277
R + + + G L+ F+ R+ +++ MM +M+K N
Sbjct: 55 RARELRKNGDKLSPKKFEKRQEELMEDQKE-------------------MMMDMMKPNFA 95
Query: 278 NVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRGWINWMFSGFVTTKVPFPLTLR 337
++P I+I GWIN FSGFV K+PFPLT R
Sbjct: 96 IMIPQILIFGWINSF-----------------------------FSGFVVAKLPFPLTGR 126
Query: 338 FKPMLQRDILGNATFSPTGIELLSLDPAWVSSASWYFLNVFGLRSIYALVLGENN 392
FK MLQR + G LD VSS SWYFL FGLR + +LG N
Sbjct: 127 FKGMLQRGVDG-------------LDVTDVSSISWYFLCSFGLRQVIQKLLGFAN 168
Score = 78.8 bits (195), Expect = 2e-17
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 141 KAAFKAEWEALEIYQHQSALEGLAA---EMIEVDMTDPSMMTEMLKGNLTNVLPMIVIGG 197
+ + L + + + E++E MM +M+K N ++P I+I G
Sbjct: 49 EKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQK---EMMMDMMKPNFAIMIPQILIFG 105
Query: 198 WINWMFSGFVTTKVPFPLTLRFKPMLQRG 226
WIN FSGFV K+PFPLT RFK MLQRG
Sbjct: 106 WINSFFSGFVVAKLPFPLTGRFKGMLQRG 134
>gnl|CDD|222064 pfam13351, DUF4099, Protein of unknown function (DUF4099). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences. The C-terminal repeat
region of this family is DUF4098, pfam13345.
Length = 84
Score = 31.3 bits (72), Expect = 0.17
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 148 WEALEIYQHQSALEGLAAEMIEVDMTDPSMMTEMLKGNLTNVLPM-IVIGG 197
WE LE G+ E +E P + ++L+G T ++P+ I I G
Sbjct: 8 WETLEKL-------GITKEKLE----KPGDLDKLLQGEKTPLVPISINIEG 47
>gnl|CDD|222152 pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is
related to the Glyoxalase domain pfam00903.
Length = 174
Score = 29.2 bits (66), Expect = 2.7
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 82 IELLSLDPAWVSSASWYFLNVFGLRS---IYALVLGENNAADQSRQFQDQMSGAAVQMPV 138
+ELL++DP + + + L + L ++ + + + G V
Sbjct: 49 LELLAIDPEAPAPDGGRWFGLDRLAGGPGLSGWALRTDDIDAVAARLRAA--GLDFGGRV 106
Query: 139 DPKAAFKAEWEALEIYQHQSALEGLAAEMIEVDMTDPSMM 178
P W GL +I+ + P+
Sbjct: 107 RP-DGGDLRWRLAVPADGDLPAGGLLPFLIQWGTSHPAAR 145
>gnl|CDD|163619 cd00844, MPP_Dbr1_N, Dbr1 RNA lariat debranching enzyme, N-terminal
metallophosphatase domain. Dbr1 is an RNA lariat
debranching enzyme that hydrolyzes 2'-5' phosphodiester
bonds at the branch points of excised intron lariats.
This alignment model represents the N-terminal
metallophosphatase domain of Dbr1. This domain belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 29.1 bits (66), Expect = 3.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 336 LRFKPMLQRDILGNATFSPTGIELL-SLDPAWVSSA 370
LR KP ++DI SP ELL L P + SA
Sbjct: 188 LRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSA 223
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 29.0 bits (65), Expect = 6.6
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 192 MIVIGGWINWMFSGFVTTKVPFPLTLRFKPML-QRGKYLTRSAFQMRRYYFNDEEVG-YF 249
M++ GG I W G +P P + ++PM G+ L ++ D+ +
Sbjct: 446 MVLKGGLIAWAIMGDPNASIPTPQPVLYRPMFGAYGRALQSTSITFVSQAAYDKGIKERL 505
Query: 250 LTQKRTAPASN 260
QK P N
Sbjct: 506 GLQKLLLPVHN 516
Score = 28.6 bits (64), Expect = 7.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 47 MIVIGGWINWMFSGFVTTKVPFPLTLRFKPML-QRGIELLSLDPAWVSSASW 97
M++ GG I W G +P P + ++PM G L S +VS A++
Sbjct: 446 MVLKGGLIAWAIMGDPNASIPTPQPVLYRPMFGAYGRALQSTSITFVSQAAY 497
>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 572
Score = 28.6 bits (64), Expect = 7.3
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 263 TDPSMMTEMLKGNLTNVLPMIVIGGWINWMFSGFVTTKVPFPLTLRFKP---MLQRGWIN 319
D S+ T ML LT L I G +NW + PL + P + +
Sbjct: 415 EDKSLTTPML--LLT--LGAITSGSALNWWLPTPQEEPI-LPLQYKLLPLLVVTLGALLA 469
Query: 320 WMFSGFVTTKVPF 332
W+F+ TK P
Sbjct: 470 WLFTTPNITKTPL 482
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.423
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,346,790
Number of extensions: 2261934
Number of successful extensions: 2042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2039
Number of HSP's successfully gapped: 15
Length of query: 445
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 345
Effective length of database: 6,502,202
Effective search space: 2243259690
Effective search space used: 2243259690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)