RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13952
         (445 letters)



>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 125

 Score = 25.8 bits (56), Expect = 6.9
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 239 YYFNDEEVGYFLTQKRTAPASNPMTDPSMMTEMLKGNLTNVLPMIVIGGWINWMFSGFVT 298
           +   +   G    + R A  ++  T+  +      G L   L +   GGW N+      +
Sbjct: 38  FNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNY---EEKS 94

Query: 299 TKVPFP---LTLRFKPMLQRGW-INWM 321
             +        L           I++ 
Sbjct: 95  CSITNTTGQHDLYLV--FSGPVNIDYF 119


>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 451

 Score = 26.1 bits (57), Expect = 9.0
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 117 NAADQSRQFQDQMSGAAVQMPVDPKAAFKAEWEALEIYQHQSALEGLAAEMIEVDMTDPS 176
           NA  +S +   +    A    +   + +  +        H+ A  G      E++     
Sbjct: 214 NALWKSHEHFKEHGCVASDHALLEPSVYYVDENRARAV-HEKAFSGEKLTQDEINDYKAF 272

Query: 177 MMTEMLKGNLTNVLPMIV 194
           MM +  K N        +
Sbjct: 273 MMVQFGKMNQETNWVTQL 290


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,732,720
Number of extensions: 79806
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 5
Length of query: 445
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,199,356
Effective search space: 428170092
Effective search space used: 428170092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)