Query psy13955
Match_columns 74
No_of_seqs 130 out of 1012
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 15:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.8 4.2E-21 9.1E-26 131.5 5.5 68 2-74 433-508 (601)
2 cd00312 Esterase_lipase Estera 99.7 5.5E-17 1.2E-21 110.7 6.5 66 3-74 384-460 (493)
3 PF00135 COesterase: Carboxyle 99.6 7.4E-16 1.6E-20 105.0 4.3 60 10-74 427-495 (535)
4 COG2272 PnbA Carboxylesterase 99.5 1.1E-14 2.3E-19 100.1 6.2 70 2-74 369-444 (491)
5 KOG1516|consensus 98.2 5E-06 1.1E-10 57.9 5.7 63 4-74 424-499 (545)
6 COG2238 RPS19A Ribosomal prote 52.1 6.3 0.00014 23.8 0.5 8 67-74 31-38 (147)
7 PF06296 DUF1044: Protein of u 37.4 50 0.0011 19.3 2.7 38 29-71 67-104 (120)
8 PHA02277 hypothetical protein 30.0 45 0.00098 19.9 1.7 22 53-74 6-27 (150)
9 PF10642 Tom5: Mitochondrial i 30.0 78 0.0017 15.6 2.4 13 50-62 7-19 (49)
10 PRK09333 30S ribosomal protein 29.2 20 0.00043 21.8 0.2 9 66-74 30-38 (150)
11 cd02639 R3H_RRM R3H domain of 28.7 90 0.002 15.9 2.7 19 49-67 23-41 (60)
12 PF08756 YfkB: YfkB-like domai 28.5 76 0.0016 19.3 2.5 31 30-65 30-60 (153)
13 PF02315 MDH: Methanol dehydro 28.4 93 0.002 17.4 2.7 17 58-74 68-84 (93)
14 PF13137 DUF3983: Protein of u 25.5 72 0.0016 14.5 1.6 14 61-74 19-33 (34)
15 PF13869 NUDIX_2: Nucleotide h 25.1 13 0.00028 23.4 -1.2 21 54-74 21-41 (188)
16 KOG1689|consensus 24.7 51 0.0011 20.8 1.4 22 53-74 46-67 (221)
17 PF14293 YWFCY: YWFCY protein 22.5 83 0.0018 16.3 1.7 11 64-74 47-57 (61)
18 PF09936 Methyltrn_RNA_4: SAM- 22.4 1E+02 0.0022 19.4 2.4 17 53-69 51-67 (185)
19 PF07888 CALCOCO1: Calcium bin 20.9 43 0.00094 24.5 0.6 25 16-40 89-113 (546)
20 PF11294 DUF3095: Protein of u 20.6 1.2E+02 0.0026 21.2 2.7 13 27-39 63-75 (373)
21 PF08588 DUF1769: Protein of u 20.2 1.4E+02 0.0031 15.1 2.4 8 36-43 5-12 (56)
22 PF03369 Herpes_UL3: Herpesvir 20.1 67 0.0015 19.0 1.2 11 12-22 112-122 (134)
No 1
>KOG4389|consensus
Probab=99.83 E-value=4.2e-21 Score=131.51 Aligned_cols=68 Identities=26% Similarity=0.406 Sum_probs=61.3
Q ss_pred HHHHHhHh-cCCCeeEEEecCC-------CCCCCCCcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHhccc
Q psy13955 2 IVDENSHH-LTCGGIIYLFCPL-------ETDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARS 73 (74)
Q Consensus 2 ~~~a~~~a-~~~~~y~Y~f~~~-------~~~Ga~H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nFakt 73 (74)
+++|++++ +++.||+|.|+|+ .|+|++||.||-|+||.|+.. ..+++++|+.+|++||++|+|||||
T Consensus 433 ~e~A~~~~~~g~~v~~YyFthrsSa~pWP~WmGVmHGYEIEyvFG~PL~~-----s~nYt~~E~~ls~rim~~WanFAkt 507 (601)
T KOG4389|consen 433 NEFADALAEQGASVYYYYFTHRSSANPWPKWMGVMHGYEIEYVFGIPLNY-----SRNYTKEEKILSRRIMRYWANFAKT 507 (601)
T ss_pred HHHHHHHHHhcCcEEEEEEeccccCCCchhhhcCcccceEEEEecccccc-----cccccHHHHHHHHHHHHHHHHHhhc
Confidence 56888888 5789999999994 689999999999999999862 4678999999999999999999999
Q ss_pred C
Q psy13955 74 G 74 (74)
Q Consensus 74 G 74 (74)
|
T Consensus 508 G 508 (601)
T KOG4389|consen 508 G 508 (601)
T ss_pred C
Confidence 8
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.69 E-value=5.5e-17 Score=110.73 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=53.0
Q ss_pred HHHHhHhc--CCCeeEEEecCC---------CCCCCCCcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13955 3 VDENSHHL--TCGGIIYLFCPL---------ETDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFA 71 (74)
Q Consensus 3 ~~a~~~a~--~~~~y~Y~f~~~---------~~~Ga~H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nFa 71 (74)
..|+.+++ +.+||+|+|+|+ ...|++|++||+|+||.+... ...+++|++++++|+++|+|||
T Consensus 384 ~~a~~~~~~~~~~vY~Y~F~~~~~~~~~~~~~~~Ga~H~~Dl~ylFg~~~~~------~~~~~~d~~ls~~m~~~w~nFa 457 (493)
T cd00312 384 YFLAQHRKAGGSPVYAYVFDHRSSLSVGRWPPWLGTVHGDEIFFVFGNPLLK------EGLREEEEKLSRTMMKYWANFA 457 (493)
T ss_pred HHHHHHHhccCCCeEEEEeccCCcCCccccCCCCCcccCCceeeecCCCCCC------CCCCcHHHHHHHHHHHHHHHHh
Confidence 45666653 689999999984 346999999999999987542 1234778999999999999999
Q ss_pred ccC
Q psy13955 72 RSG 74 (74)
Q Consensus 72 ktG 74 (74)
|+|
T Consensus 458 ktG 460 (493)
T cd00312 458 KTG 460 (493)
T ss_pred hhC
Confidence 997
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.60 E-value=7.4e-16 Score=104.96 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=50.1
Q ss_pred cCCCeeEEEecCCC---------CCCCCCcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy13955 10 LTCGGIIYLFCPLE---------TDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 74 (74)
Q Consensus 10 ~~~~~y~Y~f~~~~---------~~Ga~H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nFaktG 74 (74)
.+.++|+|+|+|+. +.|++|++|++|+||.+... ....+++|+.+++.|+++|+||||+|
T Consensus 427 ~~~~vY~Y~F~~~~~~~~~~~~~~~ga~H~~Dl~ylFg~~~~~-----~~~~~~~~~~ls~~m~~~w~nFak~G 495 (535)
T PF00135_consen 427 GGSPVYLYRFDYPPPFIFSPDPPWRGACHGDDLPYLFGNPFLS-----PPNPTEDDRKLSDQMQRYWTNFAKTG 495 (535)
T ss_dssp TTSCEEEEEEHHSSTTSTECSETTGTSBTTTTHHHHTTGCCHC-----HHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccceeecccccccccccccccccccchhhhhhhcCCCccc-----ccccccHHHHHHHHHHHHHHhcCCCC
Confidence 46899999999942 56999999999999987642 11127899999999999999999997
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.55 E-value=1.1e-14 Score=100.12 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHHHHhHhcCCCeeEEEecCC------CCCCCCCcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy13955 2 IVDENSHHLTCGGIIYLFCPL------ETDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 74 (74)
Q Consensus 2 ~~~a~~~a~~~~~y~Y~f~~~------~~~Ga~H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nFaktG 74 (74)
++.|+.|+.+.|+|+|+|+++ ...||+|+.||+++||++...+ .....+++++++|++|...|+||||+|
T Consensus 369 ~~~a~a~~~~ap~w~Yrf~~~~~~~~~~~~gA~H~~El~~Vfg~~~~~~---~~~~~~~~~~~~s~~~~~~w~nFArtg 444 (491)
T COG2272 369 IRLAQAQSAGAPTWLYRFDYAPDTVRVPGFGAPHATELSLVFGNLVALG---SAAQTARATAKLSRQMQDAWANFARTG 444 (491)
T ss_pred HHHHHhcccCCCeeEEEeccCCcccccccCCCccccceeeeeccccccc---cccccchHHHHHHHHHHHHHHHHHhcC
Confidence 567777777899999999995 3579999999999999875221 123457778899999999999999997
No 5
>KOG1516|consensus
Probab=98.17 E-value=5e-06 Score=57.88 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=45.0
Q ss_pred HHHhHhc-CCCeeEEEecCC------------CCCCCCCcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHh
Q psy13955 4 DENSHHL-TCGGIIYLFCPL------------ETDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNF 70 (74)
Q Consensus 4 ~a~~~a~-~~~~y~Y~f~~~------------~~~Ga~H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nF 70 (74)
.++.+.. +.++|+|.|++. ...|+.|++|+.|+|+.+.... ....++.|..+ +.+|+||
T Consensus 424 ~~~~~~~~~~~~~~y~f~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~f 495 (545)
T KOG1516|consen 424 LLRLRREYGNPVYLYSFDYDNPVNFGRPGEKDPDTGVEHADDLRYLFGENFLKR----PVMKSSFEKKL----IELWTNF 495 (545)
T ss_pred HHHHHHhcCCCeEEEEEEecCcccccccccccCccCCcccccceeecccccccc----CCCCChHHHHH----HHHHHHH
Confidence 3344443 369999999993 1248999999999999865321 22335566655 9999999
Q ss_pred cccC
Q psy13955 71 ARSG 74 (74)
Q Consensus 71 aktG 74 (74)
|++|
T Consensus 496 a~~g 499 (545)
T KOG1516|consen 496 AKTG 499 (545)
T ss_pred HhhC
Confidence 9987
No 6
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=52.10 E-value=6.3 Score=23.81 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=7.5
Q ss_pred HHHhcccC
Q psy13955 67 VSNFARSG 74 (74)
Q Consensus 67 w~nFaktG 74 (74)
|++|+|||
T Consensus 31 wa~~vKTG 38 (147)
T COG2238 31 WADIVKTG 38 (147)
T ss_pred hhhhhhcc
Confidence 99999998
No 7
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.42 E-value=50 Score=19.27 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=27.0
Q ss_pred CcCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13955 29 SGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFA 71 (74)
Q Consensus 29 H~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~~w~nFa 71 (74)
+++.+-|+++.+-.. ..+.|++|++.-+.+...+.++.
T Consensus 67 ~~~~~~~l~~y~K~~-----~~nis~~El~~lk~la~~l~~~~ 104 (120)
T PF06296_consen 67 QEDRIFFLYIYAKNE-----KANISDKELKALKKLAKELLNLS 104 (120)
T ss_pred eCCEEEEEEEEcccc-----cCCCCHHHHHHHHHHHHHHHHhC
Confidence 466667776654321 45679999988888888888764
No 8
>PHA02277 hypothetical protein
Probab=30.05 E-value=45 Score=19.88 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHhcccC
Q psy13955 53 TTREKLHSEVILTWVSNFARSG 74 (74)
Q Consensus 53 ~~~d~~~s~~~~~~w~nFaktG 74 (74)
+..-+.+|..=++.|.+|.-||
T Consensus 6 sth~K~iS~~Dm~~W~e~V~tg 27 (150)
T PHA02277 6 STHTKGISQADMEKWIEAVVQG 27 (150)
T ss_pred hHHHhhccHHHHHHHHHHHHhC
Confidence 4556678888899999999876
No 9
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=30.01 E-value=78 Score=15.56 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHHH
Q psy13955 50 SKYTTREKLHSEV 62 (74)
Q Consensus 50 ~~~~~~d~~~s~~ 62 (74)
...|+||+++.+.
T Consensus 7 ~qpS~eE~k~~e~ 19 (49)
T PF10642_consen 7 PQPSEEEIKAAEA 19 (49)
T ss_pred CCCCHHHHHHHHH
Confidence 3458888766543
No 10
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=29.15 E-value=20 Score=21.81 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=7.5
Q ss_pred HHHHhcccC
Q psy13955 66 WVSNFARSG 74 (74)
Q Consensus 66 ~w~nFaktG 74 (74)
=|++|+|||
T Consensus 30 ~W~~~vKTg 38 (150)
T PRK09333 30 EWAAFVKTG 38 (150)
T ss_pred cchhhhccc
Confidence 389999987
No 11
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.71 E-value=90 Score=15.85 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy13955 49 KSKYTTREKLHSEVILTWV 67 (74)
Q Consensus 49 ~~~~~~~d~~~s~~~~~~w 67 (74)
+...|++|+++...+...+
T Consensus 23 p~~ls~~eRriih~la~~l 41 (60)
T cd02639 23 PSSLSPAERRIVHLLASRL 41 (60)
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 4567999999888877654
No 12
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=28.54 E-value=76 Score=19.32 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=20.7
Q ss_pred cCchhhhcCCcCCCCCCccCCCCCHHHHHHHHHHHH
Q psy13955 30 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILT 65 (74)
Q Consensus 30 ~~dl~y~F~~~~~~~~~~~~~~~~~~d~~~s~~~~~ 65 (74)
-.|+.-|||+... ++-...++|+++.+++.+
T Consensus 30 d~~~WMLFGTLPf-----y~Cs~~eeD~~Ll~RL~~ 60 (153)
T PF08756_consen 30 DPNVWMLFGTLPF-----YPCSDDEEDLALLKRLRS 60 (153)
T ss_pred CCCeeEEeccccc-----ccCCCCHHHHHHHHHHHh
Confidence 4677889997321 244457889988877653
No 13
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=28.39 E-value=93 Score=17.35 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcccC
Q psy13955 58 LHSEVILTWVSNFARSG 74 (74)
Q Consensus 58 ~~s~~~~~~w~nFaktG 74 (74)
.|-+|=...+.||.+||
T Consensus 68 ~me~RN~kR~~~fkkTG 84 (93)
T PF02315_consen 68 AMEERNAKRVENFKKTG 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 46667778899999998
No 14
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=25.52 E-value=72 Score=14.48 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=8.5
Q ss_pred HHHHHHHHH-hcccC
Q psy13955 61 EVILTWVSN-FARSG 74 (74)
Q Consensus 61 ~~~~~~w~n-FaktG 74 (74)
.++-..|-| |++.|
T Consensus 19 ~rv~kAWRNiFvqag 33 (34)
T PF13137_consen 19 YRVDKAWRNIFVQAG 33 (34)
T ss_pred HHHHHHHHHHHHHcc
Confidence 566777777 44443
No 15
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=25.13 E-value=13 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q psy13955 54 TREKLHSEVILTWVSNFARSG 74 (74)
Q Consensus 54 ~~d~~~s~~~~~~w~nFaktG 74 (74)
++|..+.+++.++-.||.+.|
T Consensus 21 ekd~s~~~rl~rl~~~y~~~G 41 (188)
T PF13869_consen 21 EKDPSVAARLQRLKENYEKEG 41 (188)
T ss_dssp -SSSSHHHHHHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHHhC
Confidence 345668888999999999877
No 16
>KOG1689|consensus
Probab=24.73 E-value=51 Score=20.79 Aligned_cols=22 Identities=5% Similarity=0.213 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHhcccC
Q psy13955 53 TTREKLHSEVILTWVSNFARSG 74 (74)
Q Consensus 53 ~~~d~~~s~~~~~~w~nFaktG 74 (74)
-+.|..+++++.++=.+|.|-|
T Consensus 46 ~eKD~svadrf~rmk~ey~k~g 67 (221)
T KOG1689|consen 46 REKDESVADRFARMKIEYMKEG 67 (221)
T ss_pred hhccchHHHHHHHHHHHHHhhh
Confidence 3456778899999888887755
No 17
>PF14293 YWFCY: YWFCY protein
Probab=22.50 E-value=83 Score=16.25 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=6.4
Q ss_pred HHHHHHhcccC
Q psy13955 64 LTWVSNFARSG 74 (74)
Q Consensus 64 ~~~w~nFaktG 74 (74)
-++..||.|||
T Consensus 47 DrIL~n~~rt~ 57 (61)
T PF14293_consen 47 DRILLNFQRTG 57 (61)
T ss_pred HHHHHHHHhhc
Confidence 34556666664
No 18
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=22.39 E-value=1e+02 Score=19.44 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy13955 53 TTREKLHSEVILTWVSN 69 (74)
Q Consensus 53 ~~~d~~~s~~~~~~w~n 69 (74)
-++.+.++++++.+|.+
T Consensus 51 l~~Q~~l~~ril~hW~~ 67 (185)
T PF09936_consen 51 LEAQRELAERILGHWQE 67 (185)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccc
Confidence 46778999999999975
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.86 E-value=43 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.741 Sum_probs=21.4
Q ss_pred EEEecCCCCCCCCCcCchhhhcCCc
Q psy13955 16 IYLFCPLETDQSVSGEEVPYFLGVP 40 (74)
Q Consensus 16 ~Y~f~~~~~~Ga~H~~dl~y~F~~~ 40 (74)
+|.|.|-.-.|...|.-.||.|..|
T Consensus 89 ~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 89 FYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred eEEEEEECCCccEEEecCCcccCCC
Confidence 6888887777989999999999865
No 20
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=20.60 E-value=1.2e+02 Score=21.20 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=11.0
Q ss_pred CCCcCchhhhcCC
Q psy13955 27 SVSGEEVPYFLGV 39 (74)
Q Consensus 27 a~H~~dl~y~F~~ 39 (74)
+..+.|+||+||-
T Consensus 63 ~~~~~~~PFvFGG 75 (373)
T PF11294_consen 63 ALGGRDFPFVFGG 75 (373)
T ss_pred cccCCCCCeEecC
Confidence 4578999999984
No 21
>PF08588 DUF1769: Protein of unknown function (DUF1769); InterPro: IPR013897 This entry is found in fungal proteins with unknown function.
Probab=20.21 E-value=1.4e+02 Score=15.09 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=5.1
Q ss_pred hcCCcCCC
Q psy13955 36 FLGVPLDG 43 (74)
Q Consensus 36 ~F~~~~~~ 43 (74)
+||+-+..
T Consensus 5 ~FGndFd~ 12 (56)
T PF08588_consen 5 LFGNDFDR 12 (56)
T ss_pred eecCccCc
Confidence 67776653
No 22
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=20.14 E-value=67 Score=19.04 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=9.2
Q ss_pred CCeeEEEecCC
Q psy13955 12 CGGIIYLFCPL 22 (74)
Q Consensus 12 ~~~y~Y~f~~~ 22 (74)
.|||.|+|.-.
T Consensus 112 VPVfv~EF~a~ 122 (134)
T PF03369_consen 112 VPVFVYEFSAV 122 (134)
T ss_pred ceEEEEEEecc
Confidence 68999999853
Done!