RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13956
         (83 letters)



>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family. 
          Length = 510

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 26  KNTRKPKTDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
            N   P       G+++PY  G PL       K  Y+  E++ S  ++ + +NFA++G
Sbjct: 417 INKLWPPWMGVSHGDDLPYVFGNPLMR-----KLLYSEEEEILSRRMMGYWTNFAKTG 469


>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
          Length = 650

 Score = 27.8 bits (62), Expect = 0.50
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 34  DQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWV 76
           D S+      YF+GV +   L +   KYT  ++     ++ WV
Sbjct: 443 DVSLQARIAAYFIGVAIGSTLGFLAYKYTEPDRPPRRFLIPWV 485


>gnl|CDD|112622 pfam03818, MadM, Malonate/sodium symporter MadM subunit. 
          Length = 60

 Score = 25.9 bits (57), Expect = 1.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 7/30 (23%)

Query: 54 LSYYKSKYTTREKLHSEVI-------LTWV 76
          +SY  SKY T+ +LH   I       L +V
Sbjct: 26 VSYLLSKYLTKGRLHGSAIAITLGLVLAYV 55


>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
          Provisional.
          Length = 275

 Score = 24.4 bits (53), Expect = 7.9
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 23 KRRKNTRKP-------KTDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLHS 69
          + R   R P       + ++ V   ++P  LG+ LDG+  + ++    RE  H 
Sbjct: 15 RTRSAARGPLYWGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHE 68


>gnl|CDD|226174 COG3648, COG3648, Uricase (urate oxidase) [Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 299

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 15/71 (21%), Positives = 28/71 (39%)

Query: 9   GSRTAVVDNNSNTEKRRKNTRKPKTDQSVSGEEVPYFLGVPLDGDLSYYKSKYTTREKLH 68
               A V         R  T++ +  +  SG E  Y L V   G  ++   ++TT  + H
Sbjct: 124 THDLAFVRQMPERRTARVETQRGRRFEVTSGIEDLYVLKVTGSGFENFILDEFTTLPETH 183

Query: 69  SEVILTWVSNF 79
              + T+++  
Sbjct: 184 DRPLFTYLNAK 194


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.127    0.355 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,959,048
Number of extensions: 294690
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 8
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)