RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13956
(83 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 50.2 bits (120), Expect = 5e-09
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G+EVPY LG+P+ G + ++ + + S V++T+ +NFA++G
Sbjct: 456 GDEVPYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNFAKTG 500
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 42.7 bits (101), Expect = 2e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G E+ + G+PL +L YT E+ S I+ + + FA++G
Sbjct: 441 GYEIEFVFGLPLVKEL-----NYTAEEEALSRRIMHYWATFAKTG 480
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 41.7 bits (98), Expect = 4e-06
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G+E+ YF G PL+ L Y E+ + +L+ V FA++G
Sbjct: 481 GDEIEYFFGQPLNNSLQY-----RPVERELGKRMLSAVIEFAKTG 520
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 41.6 bits (98), Expect = 5e-06
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G E+ + G+PLD L YTT E++ ++ ++ + +NFAR+G
Sbjct: 448 GYEIEFIFGLPLDPSL-----NYTTEERIFAQRLMKYWTNFARTG 487
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 40.8 bits (96), Expect = 9e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G E+ + G+PL+ +YT E++ S I+ +NFA+ G
Sbjct: 439 GYEIEFVFGLPLERRD-----QYTKAEEILSRSIVKRWANFAKYG 478
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 38.9 bits (91), Expect = 4e-05
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
+++ Y G P L Y +++ S+ ++ + +NFAR+G
Sbjct: 436 ADDLQYVFGKPFATPL-----GYRAQDRTVSKAMIAYWTNFARTG 475
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 38.5 bits (90), Expect = 5e-05
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
G+E+ G P K + E S++++ + +NFAR+G
Sbjct: 450 GDELFSVFGAPF------LKEGASEEEIRLSKMVMKFWANFARNG 488
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 35.4 bits (82), Expect = 7e-04
Identities = 4/45 (8%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
E++ Y ++ + ++++NF +
Sbjct: 450 IEDLTYVFRTNSMLGGHA-SFPPHDKDDHMKYWMTSFITNFMKYS 493
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 33.5 bits (77), Expect = 0.003
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
E+P G G LS S Y T V + + +F ++
Sbjct: 425 TFELPAIFGAGSTGTLS-SDSSYLTYNAAIIPVTMHYFISFVQTL 468
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 31.1 bits (71), Expect = 0.021
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILT-WVSNFARSG 83
E+P+ G LDG K++ T K S I + W+ FA++G
Sbjct: 400 ALELPFVFG-NLDGLERMAKAEITDEVKQLSHTIQSAWI-TFAKTG 443
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.22
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 25/67 (37%)
Query: 25 RKNTRKPKTDQSVSGEEVPY----------FL--GVPLDGDLSYYKSKY--TTREKLHSE 70
RK DQS +P+ FL P + S + ++ +
Sbjct: 394 RKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASP-------FHSHLLVPASDLINKD 442
Query: 71 VILTWVS 77
++ VS
Sbjct: 443 LVKNNVS 449
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 26.3 bits (58), Expect = 1.3
Identities = 4/45 (8%), Positives = 12/45 (26%), Gaps = 16/45 (35%)
Query: 39 GEEVPYFLGVPLDGDLSYYKSKYTTREKLHSEVILTWVSNFARSG 83
++ + + G + Y + ++ FA
Sbjct: 450 ANDIVWQDYLLGSGSVIY--NNA-------------FI-AFATDL 478
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.355
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,138,663
Number of extensions: 51401
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 13
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)