Query psy13959
Match_columns 248
No_of_seqs 124 out of 1110
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 15:57:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_B 60S ribosomal protein L 100.0 8E-112 3E-116 757.9 18.4 247 1-247 1-247 (261)
2 4a17_A RPL8; eukaryotic riboso 100.0 7E-111 2E-115 752.4 18.3 247 1-247 1-248 (264)
3 3jyw_B 60S ribosomal protein L 100.0 5E-110 2E-114 740.4 7.6 243 2-244 1-243 (243)
4 3j21_B 50S ribosomal protein L 100.0 2E-106 8E-111 716.2 18.0 238 1-247 1-239 (239)
5 1vq8_A 50S ribosomal protein L 100.0 2E-105 8E-110 709.7 17.7 236 1-246 1-237 (240)
6 3v2d_D 50S ribosomal protein L 100.0 1.4E-86 4.8E-91 599.4 18.4 211 9-234 40-253 (276)
7 3r8s_C 50S ribosomal protein L 100.0 1.2E-86 4.1E-91 598.6 16.5 210 9-234 39-250 (271)
8 3bbo_E Ribosomal protein L2; l 100.0 2.4E-86 8.3E-91 596.5 -0.8 209 11-234 38-249 (269)
9 1giy_D 50S ribosomal protein L 100.0 1.3E-81 4.5E-86 537.8 18.9 178 28-212 1-178 (178)
10 1rl2_A Protein (ribosomal prot 100.0 1.9E-58 6.6E-63 380.8 13.2 137 28-171 1-137 (137)
11 2ftc_B Mitochondrial ribosomal 100.0 1.6E-54 5.3E-59 357.0 14.9 131 45-183 1-136 (136)
12 2cqa_A RUVB-like 2; TIP48, TIP 71.6 8.5 0.00029 29.3 5.7 51 35-91 8-72 (95)
13 1oei_A Major prion protein; oc 53.6 5.9 0.0002 23.1 1.4 12 208-219 6-17 (26)
14 2dhx_A Poly (ADP-ribose) polym 35.9 9.1 0.00031 29.6 0.4 62 42-112 37-99 (104)
15 1yat_A FK506 binding protein; 22.2 1.1E+02 0.0039 22.2 4.5 44 76-119 66-110 (113)
16 3sgi_A DNA ligase; HET: DNA AM 21.2 86 0.0029 31.0 4.5 106 32-140 321-451 (615)
No 1
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=8.3e-112 Score=757.95 Aligned_cols=247 Identities=70% Similarity=1.213 Sum_probs=242.9
Q ss_pred CCccccccccCCCCcceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccC
Q psy13959 1 MGRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPE 80 (248)
Q Consensus 1 mgk~~~~qr~Grg~~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~e 80 (248)
|||+|++||+|+|++||+++||+.|.++||+|||+|++..++++|++|||||||||+||||.|.|++.|+.+++||||||
T Consensus 1 Mg~~i~~qr~G~g~~fra~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlV~~~dg~~~k~~k~yIlApe 80 (261)
T 3iz5_B 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80 (261)
T ss_dssp CCSCCHHHHSSSCTTTSCCTTTSCCCCCCCCCCSCCBSSSSEEEEEEEEEETTTTEEEEEEECCCCSSSCCCCCEEECBT
T ss_pred CCCcchhhcCCCCCCccCccccccCCcccCceecccccCCccEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEecc
Confidence 99999999999999999999999999999999999998889999999999999999999999999988888899999999
Q ss_pred CCCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcC
Q psy13959 81 GMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPS 160 (248)
Q Consensus 81 g~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~ 160 (248)
||++||+|+++.++++++||+|||.+||+||.|||||+.||+||+|||||||||+|++|+.|+++++|||||||+|+|++
T Consensus 81 Gl~vGd~I~sG~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~ 160 (261)
T 3iz5_B 81 GMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPS 160 (261)
T ss_dssp TCBTTCEEEBSTTCCSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECSSCSSCEEEECTTSCEEEECT
T ss_pred CCCCCCEEEeCCCCCCCCCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEeccCCCEEEEECCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999867889999999999999999
Q ss_pred CCceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeeee
Q psy13959 161 ANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLL 240 (248)
Q Consensus 161 ~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~~ 240 (248)
+|+||||+|||.+|.+++|+|||++||++++++++||+||||||||||||||||||||+|+||||+|+||||||||+|||
T Consensus 161 ~CrATIG~Vsn~~~~~k~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGGGe~q~iG~pstv~r~appG~KvG~iaa 240 (261)
T 3iz5_B 161 SCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240 (261)
T ss_dssp TCEEEESCBSSTTTTTSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCTTCCSSSCCCSSCSEECSSSCTTTCCSEETC
T ss_pred CCcEEEEEecCCccccceecccchhhhhhhccCCCCCccceeeeCCccCCCCCCCCCCCCCCCcccCCCCCcceeceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccc
Q psy13959 241 YIQGSSR 247 (248)
Q Consensus 241 ~rtg~~~ 247 (248)
|||||+|
T Consensus 241 rrtG~~~ 247 (261)
T 3iz5_B 241 RRTGRLR 247 (261)
T ss_dssp SCCSSSS
T ss_pred ccccccc
Confidence 9999876
No 2
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=6.8e-111 Score=752.43 Aligned_cols=247 Identities=62% Similarity=1.090 Sum_probs=241.2
Q ss_pred CCccccccccCCC-CcceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEcc
Q psy13959 1 MGRVIRAQRKGAG-SVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAP 79 (248)
Q Consensus 1 mgk~~~~qr~Grg-~~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~ 79 (248)
|||+|++||+|+| ++||+++||+.|.++||+|||+|++..++++|++|||||||||+||||.|.|++.|+.+++|||||
T Consensus 1 Mg~~i~~qr~G~g~~~fr~~~~~r~g~~~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~YIlAp 80 (264)
T 4a17_A 1 MGRVIRAQRKGRANGVYKSHKSGRIAPAQYRVYDFAERQGYIRGCIRDIVHEPGRGAPLAEVAFRDPYRYKTNKEHFIAA 80 (264)
T ss_dssp -CCCCHHHHTTCSSSSCCCCCTTCCCCCCCCCCCHHHHHSEEEEEEEEEECCTTCSSCEEEEEEECTTSSCEEEEEEECB
T ss_pred CCCcchhhcCCCCCCceeCCccccccccccceeeecccCCCcCEEEEEEEECCCCCceEEEEEecCCCcccceEEEEEee
Confidence 9999999999995 899999999999999999999999888999999999999999999999999998888899999999
Q ss_pred CCCCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEc
Q psy13959 80 EGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIP 159 (248)
Q Consensus 80 eg~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (248)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||+|||||||||+|++|+.|+++++|||||||+|+|+
T Consensus 81 eGl~vGd~I~sg~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~ 160 (264)
T 4a17_A 81 EGQYSGQYVYCGLKAQIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIP 160 (264)
T ss_dssp TTCBTTCEEEEESSCCCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred cCCccccEEEECCCCCCCcCCcccHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred CCCceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeee
Q psy13959 160 SANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLL 239 (248)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~ 239 (248)
++|+||||+|||.++.+++|+|||++||++++++++||+||||||||||||||||||||+|+||||+|+||||||||+||
T Consensus 161 ~~CrATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNPVDHPHGGGe~q~iG~pstv~r~appG~KvG~ia 240 (264)
T 4a17_A 161 GSCRATVGIVAGGGRTDKPILKAGNQFHKYARKRKSWPRVRGVAMNPVDHPHGGGNHQHIGHPATVSKWASAGQKVGLRA 240 (264)
T ss_dssp TTCEEEESCBSSTTGGGSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTTTCSSCCSSSCCCCSCSEECTTCCGGGCCSEES
T ss_pred ccCcEEEEeccCCccccceeeecchhhhhhhccCCCCCCccceeeCCccCCCCCCCCCCCCCCCCccCCCCCcceeceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccc
Q psy13959 240 LYIQGSSR 247 (248)
Q Consensus 240 ~~rtg~~~ 247 (248)
||||||+|
T Consensus 241 arrTG~~~ 248 (264)
T 4a17_A 241 ARRTGLVR 248 (264)
T ss_dssp CSCCSCCC
T ss_pred cccccccc
Confidence 99999876
No 3
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=5.5e-110 Score=740.40 Aligned_cols=243 Identities=66% Similarity=1.168 Sum_probs=239.0
Q ss_pred CccccccccCCCCcceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCC
Q psy13959 2 GRVIRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEG 81 (248)
Q Consensus 2 gk~~~~qr~Grg~~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg 81 (248)
||+|++||+|+|++||+++||+.|..+||+|||+|++..++++|++|||||||||+||||.|.|++.|+.+++|||||||
T Consensus 1 g~~i~~qr~G~g~~fr~~~~~r~g~~~yR~iDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~yIlApeG 80 (243)
T 3jyw_B 1 GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEG 80 (243)
T ss_dssp CCCCTTTTTSSCSTTCCCSSSSCCCSCCCCCCSCCSSCSSCCBBCCCCEETTTTEECCBBCCSSCCSSSSCCCBCCCCTT
T ss_pred CCccceecCCCCCcccCCccccccchhcceeeecccCCCcCEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEeecC
Confidence 79999999999999999999999999999999999988899999999999999999999999999888889999999999
Q ss_pred CCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCC
Q psy13959 82 MYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSA 161 (248)
Q Consensus 82 ~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~ 161 (248)
|++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+.|+++++|||||||+|+|+++
T Consensus 81 l~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~ 160 (243)
T 3jyw_B 81 VHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSD 160 (243)
T ss_dssp CCSSCBCCCSTTCCCCBTCEEESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSC
T ss_pred CccccEEEECCCCCCCcCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999998778899999999999999999
Q ss_pred CceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeeeee
Q psy13959 162 NRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLLLY 241 (248)
Q Consensus 162 c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~~~ 241 (248)
|+||||+|||.++.+++|+|||++||++++++++||+||||||||||||||||||||+|+||||+|+||||||||+||||
T Consensus 161 c~ATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNpVDHPHGGGe~q~iG~pstv~r~appg~kvG~iaar 240 (243)
T 3jyw_B 161 ARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAAR 240 (243)
T ss_dssp CEEEESCCSCCCSSSSCCSCSTTTTTSTTTSCSCCSCCCTTTSCTTTSTTCCTTTTCCSSCSEECSSCCSSSSCSEESCS
T ss_pred CeEEEEeccCCccccceecccChhhhhhhccCCCCCccCceeeCCccCCCCCCCCCCCCCCCCcCCCCCCcceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q psy13959 242 IQG 244 (248)
Q Consensus 242 rtg 244 (248)
|||
T Consensus 241 rtG 243 (243)
T 3jyw_B 241 RTG 243 (243)
T ss_dssp SCC
T ss_pred cCC
Confidence 998
No 4
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-106 Score=716.17 Aligned_cols=238 Identities=45% Similarity=0.810 Sum_probs=232.6
Q ss_pred CCccccccccCCC-CcceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEcc
Q psy13959 1 MGRVIRAQRKGAG-SVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAP 79 (248)
Q Consensus 1 mgk~~~~qr~Grg-~~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~ 79 (248)
|||+|++||+||| ++||+++|++.|..+||.|||+ ++..++++|++|||||||||+||||+|+|| +++|||||
T Consensus 1 mg~~i~~qr~G~g~~~f~~~~~~~~~~~~yR~iDf~-r~~~i~g~V~~IeyDPnRsA~IALV~~~dg-----ek~YIlAp 74 (239)
T 3j21_B 1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYT-QEKTLRGVVEEIMHDPGRTAPVARVKFENG-----IEKLIIAP 74 (239)
T ss_dssp CCCCCHHHHHTTTCGGGCCCSSSCCCCCCCCSTTCS-TTCCEEEEEEEEEEETTTTEEEEEEEESSS-----CEEEECCB
T ss_pred CCCcchhhccCCCCCceeCCcccccchhhcceeccc-cCCCccEEEEEEEECCCCCeeEEEEEecCC-----CEEEEEcc
Confidence 9999999999999 7999999999999999999999 567899999999999999999999999997 78999999
Q ss_pred CCCCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEc
Q psy13959 80 EGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIP 159 (248)
Q Consensus 80 eg~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (248)
|||++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+
T Consensus 75 eGl~vGd~I~sG~~a~i~~GN~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k~--~~~~~vrLPSGe~r~v~ 152 (239)
T 3j21_B 75 EGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSRE--PDKVIVQLPSGELKAFN 152 (239)
T ss_dssp TTCCTTCEEEESSSSCSSTTCEEETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEEC--SSCEEEECTTSCEEEEC
T ss_pred ccCccccEEEECCCCCCCcCCEeeccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEec--CCEEEEEcCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999996 77999999999999999
Q ss_pred CCCceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeee
Q psy13959 160 SANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLL 239 (248)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~ 239 (248)
++|+||||+|||.+|.+++|+|||++||++++++++||+||||||||||||||| .+||+|+||||+|+||||||||+||
T Consensus 153 ~~c~AtIG~Vsn~~~~~~~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGG-g~~~~Grps~vsr~appg~kvG~ia 231 (239)
T 3j21_B 153 PMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGG-KEHHPGKPTTTSRRAPPGRKVGHIA 231 (239)
T ss_dssp TTCEEEESCBSCCSTTTSCCCSHHHHHHHHTSSCCCCSCCCSTTSCTTTCSSCC-SSSSCSSCSCBCSSCCTTSCCSSBT
T ss_pred ccCeEEEeeccCcccccceeeecChhhccchhhcCCCceecceeeccccCCCCC-CCCCCCccCCcCCCCCCcceeeeee
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred eeeecccc
Q psy13959 240 LYIQGSSR 247 (248)
Q Consensus 240 ~~rtg~~~ 247 (248)
||||||++
T Consensus 232 arrtG~~~ 239 (239)
T 3j21_B 232 ARRTGRRK 239 (239)
T ss_dssp CSCCSSCC
T ss_pred eccccCCC
Confidence 99999874
No 5
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=2.3e-105 Score=709.73 Aligned_cols=236 Identities=44% Similarity=0.767 Sum_probs=230.2
Q ss_pred CCccccccccCCCC-cceeccccccCCCceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEcc
Q psy13959 1 MGRVIRAQRKGAGS-VFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAP 79 (248)
Q Consensus 1 mgk~~~~qr~Grg~-~~r~~~~~~ggg~kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~ 79 (248)
|||+|++||+|+|+ +||+++|++.|..+||.|| | +..++++|++|||||||||+||||.|.|+ +++|||||
T Consensus 1 Mgk~i~~qr~G~g~~~fr~~~~~~~~~~~yR~iD--R-~~~i~g~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp 72 (240)
T 1vq8_A 1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVE--D-GDVIAGTVVDIEHDPARSAPVAAVEFEDG-----DRRLILAP 72 (240)
T ss_dssp -CCCCHHHHHTTCCGGGSCCGGGCCCCCCCCCCC--S-SSCCEEEEEEEEEETTTTEEEEEEEETTS-----CEEEECCB
T ss_pred CCccchhhccCCCCCcccCcCccccCchhceeee--c-cCCccEEEEEEEECCCCceeEEEEEecCC-----CEEEEEec
Confidence 99999999999997 9999999999999999999 6 67899999999999999999999999997 68999999
Q ss_pred CCCCcCcEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEc
Q psy13959 80 EGMYTGQFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIP 159 (248)
Q Consensus 80 eg~~vGd~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~ 159 (248)
|+|++||+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+
T Consensus 73 ~gl~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke--~~~~~vrLPSGe~r~v~ 150 (240)
T 1vq8_A 73 EGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHD--RNVAVVKLPSGEMKRLD 150 (240)
T ss_dssp TTCBTTCEEEBSTTCCSCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECC--SSCEEEECTTSCEEEEC
T ss_pred CCCccCeEEEECCCccccccccccccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEec--CCEEEEECCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999995 77999999999999999
Q ss_pred CCCceeEEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCeeeeee
Q psy13959 160 SANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSVLL 239 (248)
Q Consensus 160 ~~c~AtIG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~kvg~i~ 239 (248)
++|+||||+|||.+|.+++|+|||++||++++++++||+||||||||||||||||||||+|+||||+|+||||||||+||
T Consensus 151 ~~crAtIG~Vsn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNPVDHPHGGGeg~~~Gr~stv~r~appG~KvG~ia 230 (240)
T 1vq8_A 151 PQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIA 230 (240)
T ss_dssp TTCEEEESCBTTTTTTTSCCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEET
T ss_pred chheeeEEEecCcchhccccccCccccccccccCCCCCceeeeeeccccCCCCCCCCCCCCCCCCccCCCCCccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccc
Q psy13959 240 LYIQGSS 246 (248)
Q Consensus 240 ~~rtg~~ 246 (248)
||||||+
T Consensus 231 arrtGr~ 237 (240)
T 1vq8_A 231 SKRTGRG 237 (240)
T ss_dssp CSCCSSC
T ss_pred ecccCCC
Confidence 9999986
No 6
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=1.4e-86 Score=599.39 Aligned_cols=211 Identities=33% Similarity=0.513 Sum_probs=199.4
Q ss_pred ccCCCCcceeccccccCCCc--eeeeeccc-ccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcC
Q psy13959 9 RKGAGSVFRSHNKHRKGAPK--LRSLDFAE-RHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTG 85 (248)
Q Consensus 9 r~Grg~~~r~~~~~~ggg~k--yr~IDf~r-~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vG 85 (248)
..||++++|++++|+||||| ||+|||+| ++..++++|++|||||||||+||||.|+|| +++||||||||++|
T Consensus 40 ~~GRNn~GrIt~rhrGGGhKr~yR~IDf~R~~k~~i~g~V~~IeyDPnRsA~IAlv~~~dg-----~k~yIlAp~gl~~G 114 (276)
T 3v2d_D 40 TGGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDG-----EKRYIIAPDGLQVG 114 (276)
T ss_dssp CTTBCTTSCBSSSSBCCCCCCEEECCCCCCGGGTTCCEEEEEEECCTTSSSCEEEEEETTS-----CEEEEECBTTCCTT
T ss_pred cCCcCCCCCEEEeecCCCcccceEEeeeccccCCCCCEEEEEEEECCCCCceEEEEEeCCC-----CEEEEEeeCCCcCC
Confidence 35788999999999999985 99999999 777899999999999999999999999997 78999999999999
Q ss_pred cEEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCcee
Q psy13959 86 QFVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAM 165 (248)
Q Consensus 86 d~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~At 165 (248)
|+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+ +++++|+|||||+++|+++|+||
T Consensus 115 d~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~--~~~~~vrLPSGe~r~i~~~c~At 192 (276)
T 3v2d_D 115 QQVVAGPDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGRE--GDYVILRLPSGELRKVHGECYAT 192 (276)
T ss_dssp CEECBSTTCCSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEEE--TTEEEEECTTSCEEEEETTCEEE
T ss_pred CEEEeCCCCCCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEec--CCEEEEECCCCCeEEEcccCeEE
Confidence 9999999999999999999999999999999999999999999999999999996 67999999999999999999999
Q ss_pred EEeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCe
Q psy13959 166 VGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 234 (248)
Q Consensus 166 IG~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~k 234 (248)
||+|||.+|.+++|+|||++||+ ++||+||||||||||||||||||++.|.+..++ |||+.
T Consensus 193 IG~Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGVAMNPVDHPHGGGeGr~~~g~~p~s---pwG~~ 253 (276)
T 3v2d_D 193 VGAVGNADHKNIVLGKAGRSRWL-----GRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPAS---PWGWQ 253 (276)
T ss_dssp ESCBSCGGGGGCCCCSHHHHHHT-----TBCCCCCGGGSCTTTCTTCCCSSCCCCCSSCBC---TTSCB
T ss_pred EEeecCcchhhcEeccCcccccC-----CCCCccCeEecCCccCCCcCcCCCCCCCCCCcC---ccccc
Confidence 99999999999999999999999 579999999999999999999998765455566 77764
No 7
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=1.2e-86 Score=598.58 Aligned_cols=210 Identities=33% Similarity=0.595 Sum_probs=198.3
Q ss_pred ccCCCCcceeccccccCCCc--eeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcCc
Q psy13959 9 RKGAGSVFRSHNKHRKGAPK--LRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQ 86 (248)
Q Consensus 9 r~Grg~~~r~~~~~~ggg~k--yr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vGd 86 (248)
..||++++|++++|+||||| ||+|||+|++.+++++|++|||||||||+||||.|+|| +++||||||+|++||
T Consensus 39 ~~GRNn~GrIt~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~~~dg-----~k~YIlAp~gl~~Gd 113 (271)
T 3r8s_C 39 SGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGD 113 (271)
T ss_dssp CTTBCTTSCBSSTTBCCCCCCCEECBCCSCCCBSCCEEEEEEEECTTSSSEEEEEEETTS-----CEEEEECBTTCCSSC
T ss_pred CCCcCCCCCEEEeecCCCcCcceEEEeeccccCCCCEEEEEEEECCCCceeEEEEEecCC-----CEEEEEeeCCCcCCC
Confidence 35788999999999999985 99999999988899999999999999999999999997 789999999999999
Q ss_pred EEEEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeE
Q psy13959 87 FVYCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMV 166 (248)
Q Consensus 87 ~I~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtI 166 (248)
+|+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+ +++++|+|||||+|+|+++|+|||
T Consensus 114 ~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~--~~~~~vrLPSGe~r~i~~~c~ATI 191 (271)
T 3r8s_C 114 QIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARD--GAYVTLRLRSGEMRKVEADCRATL 191 (271)
T ss_dssp BCCBSSSSCSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEECS--TTEEEEECTTSCEEEEETTCEEEE
T ss_pred EEEECCCCCCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEec--CCEEEEECCCCCeEEEcccCeEEE
Confidence 999999999999999999999999999999999999999999999999999995 789999999999999999999999
Q ss_pred EeeecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCCCCCCCccccCCCCCCCe
Q psy13959 167 GIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRK 234 (248)
Q Consensus 167 G~vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~~~g~ps~v~r~a~pg~k 234 (248)
|+|||.+|.+++|+|||++||+ ++||+||||||||||||||||||++.|++ .++ |||+.
T Consensus 192 G~Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGVAMNPVDHPHGGGeGk~ggr~-p~t---PWG~~ 250 (271)
T 3r8s_C 192 GEVGNAEHMLRVLGKAGAARWR-----GVRPTVRGTAMNPVDHPHGGGEGRNFGKH-PVT---PWGVQ 250 (271)
T ss_dssp SCBSCSGGGGCCCCSHHHHHTT-----TBCCCCCGGGSCTTTCSSCCCSSSCCCSC-CBC---TTSCB
T ss_pred EeecCcchhhcEecccccccCC-----CCCCccCeEeeCCccCCccCcCCCCCCCC-CCC---ccccc
Confidence 9999999999999999999999 67999999999999999999998855554 344 88864
No 8
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.4e-86 Score=596.51 Aligned_cols=209 Identities=35% Similarity=0.587 Sum_probs=198.2
Q ss_pred CCCCcceeccccccCCCc--eeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcCcEE
Q psy13959 11 GAGSVFRSHNKHRKGAPK--LRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFV 88 (248)
Q Consensus 11 Grg~~~r~~~~~~ggg~k--yr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vGd~I 88 (248)
||++++|++++|++|||| ||+|||+|++..++++|++|||||||+|+||||.|.|+ +++||||||+|++||+|
T Consensus 38 GRNn~Grit~rhrGGGhKr~yR~IDf~r~~~~i~g~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp~gl~~Gd~I 112 (269)
T 3bbo_E 38 GRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTI 112 (269)
T ss_dssp SCSCCSSCCCSCCCCCSCCCCCCCCCSCCCCSCCCCCCCCCCCSSSCSCCCCCCCSSC-----CCCCCCCCSSCSSCCCC
T ss_pred ccCCCCCEEEEecCCccccccceeeecccCCCccEEEEEEEECCCCCeeEEEEEeCCC-----CEEEEEchhhcccccEE
Confidence 788999999999999984 99999999988899999999999999999999999997 68899999999999999
Q ss_pred EEecccccccCCcccccCCCCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeEEe
Q psy13959 89 YCGKKATLQIGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGI 168 (248)
Q Consensus 89 ~~g~~~~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~ 168 (248)
+++.++++++||+|||.+||+||.|||||+.||+||||||||||||+|++|+ +++++|+|||||+|+|+++|+||||+
T Consensus 113 ~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke--~~~~~vrLPSGe~r~v~~~c~AtIG~ 190 (269)
T 3bbo_E 113 VSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKE--GKSATLKLPSGEVRLISKNCSATVGQ 190 (269)
T ss_dssp CCSSSCCCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSSC--STTCCCBCSTTCBCCCCSSCEECSCC
T ss_pred EECCCCCCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEec--CCEEEEECCCCCEEEEchhhheeEee
Confidence 9999999999999999999999999999999999999999999999999995 77999999999999999999999999
Q ss_pred eecCCccccceeccccchhhhhhcCCCCceeceeecCCCCCCCCCCCCC-CCCCCccccCCCCCCCe
Q psy13959 169 VAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQ-HIGKASTVKRGTSAGRK 234 (248)
Q Consensus 169 vsn~~~~~~~lgKAG~~r~~~~~~~~~rP~VRGvAMNpvDHPhGGg~~~-~~g~ps~v~r~a~pg~k 234 (248)
|||.+|.+++|+|||++||+ ++||+||||||||||||||||||+ ++|++..++ |||+.
T Consensus 191 Vsn~~~~~~~lgKAGr~rw~-----g~rP~VRGvAMNPVDHPHGGGeGr~~~Gr~~p~t---pWG~~ 249 (269)
T 3bbo_E 191 VGNVGVNQKRLGRAGSKRWL-----GKRPVVRGVVMNPVDHPHGGGEGRAPIGRKSPTT---PWGYP 249 (269)
T ss_dssp CCCSHHHHSCCCSSSSSSTT-----TCSCSCCCCCSCTTTSSSCCSSSCCCTTSSCCSS---SCCCS
T ss_pred ecCchhhhcchhhhhhcccC-----CCCCcccceeeccccCCCCcCCCcCCCCCCCCCC---CCccC
Confidence 99999999999999999999 479999999999999999999986 567764455 88854
No 9
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=1.3e-81 Score=537.77 Aligned_cols=178 Identities=42% Similarity=0.702 Sum_probs=174.2
Q ss_pred ceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcCcEEEEecccccccCCcccccCC
Q psy13959 28 KLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGM 107 (248)
Q Consensus 28 kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vGd~I~~g~~~~~~~Gn~lpL~~I 107 (248)
+||+|||+|++..++++|++|||||||||+||||.|.|| +++||||||||++||+|++++++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDP~RsA~IAlv~y~dg-----~~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (178)
T 1giy_D 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (178)
T ss_pred CCceeecccccCCccEEEEEEEECCCCCeEEEEEEecCC-----CEEEEECccCCccccEEEECCCCccccCCCcccccC
Confidence 599999999988899999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeEEeeecCCccccceeccccchh
Q psy13959 108 PEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAGRAHY 187 (248)
Q Consensus 108 P~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~lgKAG~~r~ 187 (248)
|+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+++|+||||+|||.+|.+++|+|||++||
T Consensus 76 P~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~ke--~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r~ 153 (178)
T 1giy_D 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE--GKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHH 153 (178)
T ss_pred CCCCEEEeEeccCCCCeEEEEeCCCeEEEEEec--CCeEEEECCCCCEEEEcccCcEEEEEecCcchhcCeecccchhhc
Confidence 999999999999999999999999999999995 779999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceeceeecCCCCCCCC
Q psy13959 188 KYKAKRNCWPKVRGVAMNPVEHPHG 212 (248)
Q Consensus 188 ~~~~~~~~rP~VRGvAMNpvDHPhG 212 (248)
++|+|+++||+||||||||||||||
T Consensus 154 ~gk~k~~~rP~VRGvAMNpvDHPHG 178 (178)
T 1giy_D 154 KMKARGTKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred CCCccCCcCCccceeeeCCccCCCC
Confidence 9999999999999999999999998
No 10
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=1.9e-58 Score=380.76 Aligned_cols=137 Identities=35% Similarity=0.579 Sum_probs=132.6
Q ss_pred ceeeeecccccCCceEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcCcEEEEecccccccCCcccccCC
Q psy13959 28 KLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQIGNVMPVGGM 107 (248)
Q Consensus 28 kyr~IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vGd~I~~g~~~~~~~Gn~lpL~~I 107 (248)
+||+|||+|++..++++|++|||||||||+||||.|.|| +++||||||||++||+|++++++++++||+|||.+|
T Consensus 1 ~yR~iDf~r~~~~i~~~V~~IeyDPnRsA~IAlv~y~dg-----~k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~i 75 (137)
T 1rl2_A 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENI 75 (137)
T ss_dssp CCSCBCSSCCCTTCCEEEEEEEEEGGGTEEEEEEEETTS-----CEEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGS
T ss_pred CCceEecccccCCccEEEEEEEECCCCCEEEEEEEeCCC-----CEEEEEecccCccceEEEECCccccccCCEeehhhC
Confidence 599999999988899999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CCCCeeeeeeeecCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeEEeeec
Q psy13959 108 PEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAG 171 (248)
Q Consensus 108 P~Gt~I~NIE~~pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn 171 (248)
|+||.|||||+.||+||||||||||||+|++|+ +++++|||||||+|+|+++|+||||+|||
T Consensus 76 P~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke--~~~~~vrLPSGe~r~v~~~c~AtIG~VsN 137 (137)
T 1rl2_A 76 PVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE--GKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp CTTCEEESEESSTTSCEEESSSSSCCEEEEEEE--TTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred CCCCEEEEEEccCCCCcEEEEeCCCeEEEEEEc--CCEEEEECCCCCeEEECCcCcEEEEEccC
Confidence 999999999999999999999999999999996 77999999999999999999999999997
No 11
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=1.6e-54 Score=356.96 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=125.0
Q ss_pred EEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCcCcEEEEecc-----cccccCCcccccCCCCCCeeeeeeee
Q psy13959 45 VRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKK-----ATLQIGNVMPVGGMPEGTIVCNLEEK 119 (248)
Q Consensus 45 V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~vGd~I~~g~~-----~~~~~Gn~lpL~~IP~Gt~I~NIE~~ 119 (248)
|++||||||||||||||.+.| +++||||||||++||+|+++.+ +++++||+|||.+||+||.|||||++
T Consensus 1 V~~IeyDPnRsA~IAlv~~~~------~k~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~ 74 (136)
T 2ftc_B 1 VIQVRYDPCRSADIALVAGGS------RKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESE 74 (136)
T ss_pred CEEEEECCCCCcEEEEEECCC------eeEEEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEecc
Confidence 689999999999999996532 4899999999999999999887 79999999999999999999999999
Q ss_pred cCCCceEeecCCCeEEEEeecCCCCeEEEEccCCceEEEcCCCceeEEeeecCCccccceeccc
Q psy13959 120 TGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRIDKPILKAG 183 (248)
Q Consensus 120 pg~ggklaRsAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~AtIG~vsn~~~~~~~lgKAG 183 (248)
||+||||||||||||+|++|+ +++++|||||||+|+|+++|+||||+|||.+|.++++||||
T Consensus 75 pG~gg~laRsAGt~a~ii~ke--~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG 136 (136)
T 2ftc_B 75 PGRGAQYIRAAGTCGVLLRKV--NGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred CCCCcEEEEeCCCeEEEEEec--CCEEEEECCCCCeEEECcCCcEEEEEecChhhccceeccCC
Confidence 999999999999999999995 77999999999999999999999999999999999999998
No 12
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=71.55 E-value=8.5 Score=29.34 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred ccccCCceEEEEEEEeCCCccc------ceEEEEecCCCccCCceEEEEccC--------CCCcCcEEEEe
Q psy13959 35 AERHGYLKGVVRDIIHDPGRGA------PLAVVHFRNPYKFKTNKELFIAPE--------GMYTGQFVYCG 91 (248)
Q Consensus 35 ~r~~~~~~g~V~~I~yDP~Rsa------~IAlv~~~dg~~~~~~~~yilA~e--------g~~vGd~I~~g 91 (248)
+...+.++|.|.+|..|-.++. .|-| +-.| .++.|=|.++ ++.+||+|+.-
T Consensus 8 kE~keVyEGEV~ei~~~~~~~~~~~~~~~itL-kT~d-----~ek~l~lg~~i~e~L~kekV~~GDVI~Id 72 (95)
T 2cqa_A 8 KEETEIIEGEVVEIQIDRPATGTGSKVGKLTL-KTTE-----METIYDLGTKMIESLTKDKVQAGDVITID 72 (95)
T ss_dssp CCCCSEEEEEEEEEEEECTTSSSSSCEEEEEE-ECSS-----SEEEEEECSHHHHHHHHTTCCTTSEEEEE
T ss_pred EEEEEEEEEEEEEEEEeecCCCCcceEEEEEE-EecC-----CcEEEeCCHHHHHHHHHcCceeCCEEEEE
Confidence 3345678999999998877543 3333 3333 3677777764 89999998853
No 13
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=53.61 E-value=5.9 Score=23.09 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q psy13959 208 EHPHGGGNHQHI 219 (248)
Q Consensus 208 DHPhGGg~~~~~ 219 (248)
-|||||+-+|+-
T Consensus 6 gqp~gg~wgqph 17 (26)
T 1oei_A 6 GQPHGGGWGQPH 17 (26)
T ss_dssp SSTTSSSSTTTC
T ss_pred CCccCCcCCCCC
Confidence 478877765443
No 14
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.87 E-value=9.1 Score=29.62 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=34.9
Q ss_pred eEEEEEEEeCCCcccceEEEEecCCCccCCceEEEEccCCCCc-CcEEEEecccccccCCcccccCCCCCCe
Q psy13959 42 KGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYT-GQFVYCGKKATLQIGNVMPVGGMPEGTI 112 (248)
Q Consensus 42 ~g~V~~I~yDP~Rsa~IAlv~~~dg~~~~~~~~yilA~eg~~v-Gd~I~~g~~~~~~~Gn~lpL~~IP~Gt~ 112 (248)
-|.|.+++|+| .+ |+|.|.|.... .-||+-+.... |..+.-. -........+-|+.+|.||-
T Consensus 37 GG~V~~v~~~~-~~---AvItF~d~~va----~rVL~k~~H~L~~~~LsV~-P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 37 GGPVLSWQRLG-CG---GVLTFREPADA----ERVLAQADHELHGAQLSLR-PAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CCCEEEEEEET-TE---EEEEESSHHHH----HHHHTCSCCBSSSSBCEEE-ECCCCCCCCCCCCSCCCCCC
T ss_pred CceeeEEEEcC-Cc---EEEEEcChHHH----HHHhcCCcceecCeEEEEE-cCCCCCcceEeeecCCCCCC
Confidence 37899999999 44 57778774210 01222211111 1111111 13456777889999999984
No 15
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=22.19 E-value=1.1e+02 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=28.2
Q ss_pred EEccCCCCcCcEEEEecccccccCCcccccCCCCC-Ceeeeeeee
Q psy13959 76 FIAPEGMYTGQFVYCGKKATLQIGNVMPVGGMPEG-TIVCNLEEK 119 (248)
Q Consensus 76 ilA~eg~~vGd~I~~g~~~~~~~Gn~lpL~~IP~G-t~I~NIE~~ 119 (248)
--|-.+|++|+....--..+..-|+.-.-..||.+ +.++.||+.
T Consensus 66 e~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~ 110 (113)
T 1yat_A 66 DVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110 (113)
T ss_dssp HHHGGGCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEE
T ss_pred HHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCCCCeEEEEEEEE
Confidence 44578999999987655444444543322347776 567777764
No 16
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=21.24 E-value=86 Score=31.01 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=44.3
Q ss_pred eecccccCCceEEEEEEEeCCCcccceEEEEecCCCc----------cCCceEEEEccCCCCcCcEEEEecc--c-----
Q psy13959 32 LDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYK----------FKTNKELFIAPEGMYTGQFVYCGKK--A----- 94 (248)
Q Consensus 32 IDf~r~~~~~~g~V~~I~yDP~Rsa~IAlv~~~dg~~----------~~~~~~yilA~eg~~vGd~I~~g~~--~----- 94 (248)
|=||...+...-+|.+|+...+||.-|.-|...++.. ..|.. .|.-.++.+||.|..-.- .
T Consensus 321 iA~Kfpaee~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d--~i~~~di~iGD~V~V~rAGdVIP~V~ 398 (615)
T 3sgi_A 321 IAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNAS--EIKRKGVLIGDTVVIRKAGDVIPEVL 398 (615)
T ss_dssp EEEECCCSEEEEECCEECCCBCSSSCBCCBEECCCEECSSSEECCCBCCSTT--TTTTTCCCBTCEEEEECCSSSSCCCC
T ss_pred EEEcCCCceeEEEEEEEEEecCCCceeeEEEEEEeEEECCEEEEEecCCCHH--HHHHcCCCCCCEEEEEEcCCCcccee
Confidence 4444444455678999999999996655443333310 11111 356788999999986431 1
Q ss_pred ----ccccCCcccccCCCCCCeeeeeeeec-CCC--ceEeecC-CCeEEEEeec
Q psy13959 95 ----TLQIGNVMPVGGMPEGTIVCNLEEKT-GDR--GRLARAS-GNYATVIAHN 140 (248)
Q Consensus 95 ----~~~~Gn~lpL~~IP~Gt~I~NIE~~p-g~g--gklaRsA-Gt~A~Ii~k~ 140 (248)
+..+++..|+ .+|.-+.+|+=++.+ -+| ..+|-.. .+-|+++.+.
T Consensus 399 ~vv~~~R~~~~~~~-~~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~~~~l 451 (615)
T 3sgi_A 399 GPVVELRDGSEREF-IMPTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRERV 451 (615)
T ss_dssp EECTTCCCCCCBCC-CCC------------------------------------
T ss_pred eeccccCCCCCccC-CCCCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHHHHHH
Confidence 2245666554 689999999988876 344 4455543 4777887653
Done!