RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13959
(248 letters)
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 147
Score = 158 bits (400), Expect = 1e-49
Identities = 71/137 (51%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 99 GNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVI 158
GN +P+ +PEG VCN+E GD G+ ARASG A ++ H D VKLPSG K +
Sbjct: 1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRL 58
Query: 159 PSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
RA +G+VAGGGR DKP +KAG H+K KA+ WP VRGVAMN V+HP GGG QH
Sbjct: 59 DPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQH 118
Query: 219 IGKASTVKRGTSAGRKV 235
GK ++ R GRKV
Sbjct: 119 PGKPKSISRNAPPGRKV 135
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 147
Score = 111 bits (279), Expect = 2e-31
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 98 IGNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKV 157
+GN +P+ +P GT+V +E + +LARA+G A + + ++LPSG +
Sbjct: 1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR--EGDYVILRLPSGELRK 58
Query: 158 IPSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQ 217
+ A VG V + + KAGR+ + P VRG AMNPV+HPHGGG +
Sbjct: 59 VHGECYATVGAVGNADHKNIVLGKAGRSRWL-----GRRPHVRGAAMNPVDHPHGGGEGR 113
Query: 218 HIGKASTV 225
Sbjct: 114 APRGRPPA 121
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein
L2 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 108 bits (272), Expect = 2e-30
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 99 GNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVI 158
GN +P+ +P G+ V N+E K G G+LAR++G Y ++A D ++L SG + +
Sbjct: 2 GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKV 59
Query: 159 PSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
+ RA +G V + + + KAG A + R P VRG AMNPV+HPHGGG ++
Sbjct: 60 EADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDHPHGGGEGRN 114
Query: 219 IGKASTVKRGTSA-GRK 234
GK G G+K
Sbjct: 115 FGKHPVTPWGVQTKGKK 131
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 84.0 bits (208), Expect = 1e-21
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 2 GRVIRAQRKGAG-SVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAV 60
GR I+ QR+G G S FR+ + K + R ++ + G V DI HDP R AP+A
Sbjct: 1 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVE---DGDVIAGTVVDIEHDPARSAPVAA 57
Query: 61 VHFRNPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQ 97
V F + + L +APEG+ G + G A +
Sbjct: 58 VEFEDGDRR-----LILAPEGVGVGDELQVGVSAEIA 89
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein
L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 75.2 bits (185), Expect = 1e-18
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 99 GNVMPVGGMPEGTIVCNLEEKTGDRGRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVI 158
GN +P+ +P GT+V N+E K G G+L RA+G A V+ + K V+L SG ++I
Sbjct: 1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK--EGKYVIVRLASGEVRMI 58
Query: 159 PSANRAMVGIV 169
RA VG V
Sbjct: 59 LGKCRATVGEV 69
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 51.2 bits (123), Expect = 9e-10
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 28 KLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQF 87
+ R +DF + G V I +DP R A +A++++ + K IAP+ + G
Sbjct: 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKR-----YIIAPKNLKVGME 55
Query: 88 VYCGKKATLQI 98
+ G A ++I
Sbjct: 56 IMSGPDADIKI 66
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
protein L2 {Escherichia coli [TaxId: 562]}
Length = 64
Score = 49.3 bits (118), Expect = 5e-09
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 30 RSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFVY 89
R +DF + VV + +DP R A +A+V +++ + +AP+G+ G +
Sbjct: 2 RIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKD-----GERRYILAPKGLKAGDQIQ 56
Query: 90 CGKKA 94
G A
Sbjct: 57 SGVDA 61
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal
protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Length = 95
Score = 40.5 bits (95), Expect = 2e-05
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 5 IRAQRKGAGSVFRSHNKHRKGAPKLRSLDFAERHGYLKGVVRDIIHDPGRGAPLAVVHFR 64
I ++ G G K + V I +DP R A +A++H+
Sbjct: 17 ITSRFIGGGHKRLYRIIDFKR----------RDKSGVNAKVAAIEYDPNRSARIALLHYA 66
Query: 65 NPYKFKTNKELFIAPEGMYTGQFVYCGKKATLQI 98
+ K +APEG+ G V G +A ++
Sbjct: 67 D-----GEKRYILAPEGLTVGATVNAGPEAEPKL 95
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 125
Score = 39.1 bits (91), Expect = 9e-05
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 18 SHNKHRKGAPKLRSLDFAER-HGYLKGVVRDIIHDPGRGAPLAVVHFRNPYKFKTNKELF 76
+ R +DF + V I +DP R A +A++H+ + K
Sbjct: 50 VRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVD-----GEKRYI 104
Query: 77 IAPEGMYTGQFVYCGKKA 94
IAP+G+ GQ V G A
Sbjct: 105 IAPDGLQVGQQVVAGPDA 122
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 135
Score = 28.6 bits (64), Expect = 0.42
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 92 KKATLQIG---NVMPVGGMPEGTIVC---------NLEEKTGDRGRLARASGNYATVIAH 139
KKA ++ MP+G + + I G ++ S + T+I H
Sbjct: 22 KKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIPH 81
Query: 140 NPDTKRTRV 148
+ K+ +
Sbjct: 82 DFGMKKPPL 90
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 26.8 bits (58), Expect = 2.1
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 138 AHNPDTKRTRVKLPSGAKKVI--PSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNC 195
H D + T +LP+G A + +G+ G + G +H A
Sbjct: 3 PHPQDLEFT--RLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLT 60
Query: 196 WPKVRGVAMNPVEHPHGGGNHQHIGKASTV 225
+ GG + +
Sbjct: 61 TKGASSFKITRGIEAVGGKLSVTSTRENMA 90
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 26.1 bits (56), Expect = 3.4
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 149 KLPSGAKKVI---PSANRAMVGIVAGGGRIDKPILKAGRAHYKYKAKRNCW 196
+L +G PSA+ A VG+V G G ++ G ++ +
Sbjct: 5 QLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKE 55
>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter
heparinus (Flavobacterium heparinum) [TaxId: 984]}
Length = 101
Score = 24.4 bits (53), Expect = 6.5
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 51 DPGRGAPLAVVHFRNPYKFKTNKELFIAPEGMYTGQFV 88
DP + AV+ R+ KTN+ P+ + G V
Sbjct: 61 DPLQKEKTAVLSIRDLKTGKTNRVKIDFPQQEFAGATV 98
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14)
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 24.7 bits (54), Expect = 6.9
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 124 GRLARASGNYATVIAHNPDTKRTRVKLPSGAKKVIPSANRAMVGIVAGGGRI 175
GRL + I + + K ++L S +VG V I
Sbjct: 27 GRLEKIHPTGKMFILSDGEGKNGTIELMEPL-DEEISGIVEVVGRVTAKATI 77
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId:
5386]}
Length = 145
Score = 24.5 bits (53), Expect = 9.2
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 197 PKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVSV 237
P + +NP + +GG ++ + + ++ G KV V
Sbjct: 88 PDETALVINPQYYNNGGRDYVREKQLAEYSVTSAIGTKVEV 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 939,946
Number of extensions: 44500
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 17
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)