BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1396
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2
SV=2
Length = 964
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816
>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura
GN=betaCop PE=3 SV=2
Length = 965
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 759 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 817
>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1
Length = 953
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1
Length = 953
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1
Length = 953
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1
Length = 953
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1
Length = 953
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3
Length = 953
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1
Length = 953
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1
Length = 953
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1
SV=2
Length = 948
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T +TLQN LELAT+GDLKLVERPQ LAP IKAN+KV+STE G+IFGNI
Sbjct: 746 VINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNI 804
>sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2
SV=2
Length = 948
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T +TLQN LELAT+GDLKLVERPQ LAP IKAN+KV+STE G+IFGNI
Sbjct: 746 VINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNI 804
>sp|Q53PC7|COPB1_ORYSJ Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica
GN=Os11g0174000 PE=2 SV=1
Length = 953
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T +TLQN LELAT+GDLKLV+RPQ LAP I+AN+KV+STE G+IFGNI
Sbjct: 750 VINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNI 808
>sp|Q0JNK5|COPB2_ORYSJ Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica
GN=Os01g0281400 PE=3 SV=1
Length = 950
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T +TLQN LELAT+GDLKLV+RPQ LAP I+AN+KV+STE G+IFGNI
Sbjct: 748 IINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNI 806
>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec26 PE=3 SV=1
Length = 940
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 12 TGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
T TLQN +++LATLGDLK+VERP P+ L PH F +++A VKV+STE+ +IFGNI
Sbjct: 749 TDTTLQNLSVDLATLGDLKVVERPPPMNLGPHAFKSVQATVKVSSTESAVIFGNI 803
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2
Length = 912
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V + T DTLQN TLEL TLGDLK+ ER P +AP + + KA++KV+ST+NG+I G I
Sbjct: 705 VFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPREKTSAKASIKVSSTDNGVIMGTI 763
>sp|Q9U4N3|COPB_TOXGO Coatomer subunit beta OS=Toxoplasma gondii PE=2 SV=2
Length = 1103
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 41/59 (69%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T D+LQN T+E +T GDLKLVERP PV LAP + A +KV STE GII G +
Sbjct: 855 VVNRTQDSLQNVTVEPSTHGDLKLVERPAPVSLAPGQQAVLHAPIKVRSTEAGIILGYV 913
>sp|Q6FM46|COPB_CANGA Coatomer subunit beta OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC26 PE=3
SV=1
Length = 972
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 12 TGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
T +TL+N ++ ATLGDLK+VE P + PH F + VKV+S + G+IFGNI
Sbjct: 765 TKETLKNFHVQFATLGDLKIVENPPATNVVPHGFHRVSVTVKVSSADTGVIFGNI 819
>sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC26 PE=1 SV=2
Length = 973
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 12 TGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
T +TL+N ++ ATLGDLK+++ PQ + PH F VKV+S + G+IFGNI
Sbjct: 766 TKETLKNLHVQFATLGDLKIIDTPQKTNVIPHGFHKFTVTVKVSSADTGVIFGNI 820
>sp|Q9NFU6|COPB_TRYBB Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1
Length = 982
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFG 64
++ + + T + L++ ++EL LG +KL ERPQ + PH I+ +KV S E G+I
Sbjct: 765 DWYIANCTANVLRDVSIELTPLGSMKLCERPQVHTIQPHGSVRIRTALKVGSPETGVICA 824
Query: 65 NI 66
++
Sbjct: 825 SV 826
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,341,363
Number of Sequences: 539616
Number of extensions: 685907
Number of successful extensions: 1488
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 21
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)