Query psy1396
Match_columns 66
No_of_seqs 81 out of 111
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 15:58:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r39_A FIXG-related protein; s 96.3 0.023 7.8E-07 35.2 7.4 50 5-56 36-85 (118)
2 3hs8_A Adaptor protein complex 93.9 0.093 3.2E-06 37.4 4.9 50 6-55 74-127 (273)
3 1kyf_A Alpha-adaptin C; protei 91.5 0.41 1.4E-05 33.3 5.5 50 6-55 48-101 (247)
4 2g30_A AP-2 complex subunit be 75.5 6.5 0.00022 27.6 5.5 49 5-53 60-110 (258)
5 1ifr_A Lamin A/C; immunoglobul 70.1 13 0.00044 23.5 5.5 40 3-50 18-68 (121)
6 3idu_A Uncharacterized protein 69.2 3.8 0.00013 26.0 2.8 39 13-53 4-42 (127)
7 2lll_A Lamin-B2; immunoglobuli 67.8 14 0.00049 24.0 5.4 40 3-50 33-83 (139)
8 2e27_L Anti-ciguatoxin antibod 67.4 4.3 0.00015 23.7 2.6 28 26-53 1-28 (119)
9 2hr0_B Complement C3 alpha' ch 67.4 11 0.00039 29.9 5.7 48 6-54 101-154 (915)
10 2kzb_A Autophagy-related prote 67.1 4.9 0.00017 26.2 3.0 58 6-63 26-97 (118)
11 3idu_A Uncharacterized protein 66.5 22 0.00074 22.5 6.1 47 5-54 38-84 (127)
12 3hrz_B Cobra venom factor; ser 65.4 26 0.0009 23.9 6.6 48 6-54 102-154 (252)
13 2q20_A VK1 O18/O8 germline lig 59.4 11 0.00038 21.1 3.3 28 27-54 2-29 (109)
14 2vzs_A CSXA, EXO-beta-D-glucos 58.2 24 0.00083 28.8 6.2 43 3-45 684-729 (1032)
15 1ufg_A Lamin A, nuclear lamin; 58.2 27 0.00092 23.0 5.5 40 3-50 49-99 (151)
16 4acq_A Alpha-2-macroglobulin; 57.8 43 0.0015 28.4 7.8 49 6-55 789-840 (1451)
17 2kzk_A Uncharacterized protein 57.1 6.1 0.00021 25.4 2.0 34 6-44 22-56 (107)
18 1xf1_A C5A peptidase, SCP; hyd 56.0 8.1 0.00028 31.1 3.0 34 33-66 543-585 (926)
19 3mnm_A ADP-ribosylation factor 55.5 35 0.0012 21.2 5.5 50 6-55 37-87 (123)
20 1r4x_A Gamma1-COP, coatomer ga 52.6 45 0.0015 23.9 6.2 51 6-56 64-115 (275)
21 1i3g_L Antibody FV fragment; a 51.4 17 0.00057 20.5 3.2 28 26-53 2-29 (111)
22 2pn5_A TEP1R, thioester-contai 50.9 42 0.0015 27.6 6.5 49 6-55 686-742 (1325)
23 3bfo_A Mucosa-associated lymph 50.3 26 0.0009 18.5 3.8 27 27-53 2-28 (91)
24 3zy7_A AP-1 complex subunit ga 50.0 43 0.0015 20.7 5.3 50 6-55 35-85 (122)
25 2xt1_B Camelid VHH 9; viral pr 48.6 26 0.0009 20.2 3.8 26 27-53 2-27 (121)
26 1pzd_A Coatomer gamma subunit; 46.8 55 0.0019 23.7 6.0 51 6-56 111-162 (322)
27 1jhl_L IGG1-kappa D11.15 FV (l 46.4 22 0.00077 19.6 3.2 26 29-54 2-27 (108)
28 3dcd_A Galactose mutarotase re 46.1 23 0.00079 24.6 3.8 43 18-60 249-297 (307)
29 1yyc_A LEA protein, putative l 45.8 56 0.0019 21.7 5.5 46 11-56 75-121 (174)
30 2zex_A S-layer associated mult 45.6 13 0.00046 22.7 2.3 25 36-60 53-77 (147)
31 3bqo_B TERF1-interacting nucle 44.5 5.5 0.00019 20.0 0.3 15 37-51 2-16 (26)
32 1xiw_D Immunoglobulin heavy ch 43.5 40 0.0014 19.2 4.1 23 32-54 4-26 (122)
33 1w8o_A Bacterial sialidase; 3D 43.3 53 0.0018 23.9 5.5 49 5-55 378-426 (601)
34 2b39_A C3; thioester, immune d 43.1 57 0.002 27.7 6.3 48 6-54 848-901 (1661)
35 2ys4_A Hydrocephalus-inducing 43.1 51 0.0017 19.5 6.3 44 5-53 46-89 (122)
36 3prx_B Cobra venom factor; imm 42.9 55 0.0019 28.4 6.2 48 6-54 834-886 (1642)
37 2zez_A Family 16 CBM-2, S-laye 42.9 18 0.00061 23.2 2.6 32 29-60 38-74 (144)
38 1euw_A Dutpase, deoxyuridine 5 41.9 50 0.0017 21.2 4.7 28 37-64 40-70 (152)
39 3vta_A Cucumisin; subtilisin-l 41.9 78 0.0027 24.1 6.4 45 21-66 557-602 (621)
40 3u1j_A Serine protease subunit 41.3 15 0.00053 20.4 1.9 23 15-37 26-48 (51)
41 3tpk_A Immunoglobulin heavy ch 41.0 57 0.0019 19.5 5.0 28 28-56 5-32 (136)
42 3k1k_C Enhancer; nanobody, ant 40.9 32 0.0011 20.2 3.4 27 27-54 2-28 (123)
43 2je8_A Beta-mannosidase; glyco 40.6 51 0.0017 26.2 5.4 45 4-48 667-715 (848)
44 4fxk_B Complement C4-A alpha c 40.6 46 0.0016 25.6 5.0 49 6-55 174-225 (767)
45 1i3u_A Antibody VHH LAMA domai 40.3 30 0.001 19.9 3.2 23 32-54 4-26 (127)
46 1eeq_A Kappa-4 immunoglobulin 39.9 32 0.0011 19.2 3.2 27 29-55 2-28 (114)
47 1i8k_A Epidermal growth factor 39.3 29 0.00099 19.2 2.9 25 29-53 2-26 (107)
48 3dmm_C T-cell surface glycopro 39.0 34 0.0012 22.0 3.5 29 25-53 6-34 (166)
49 1zvh_A Immunoglobulin heavy ch 38.6 55 0.0019 19.3 4.2 23 33-55 5-27 (134)
50 1mfa_H IGG1-lambda Se155-4 FAB 38.5 49 0.0017 18.7 3.9 23 32-54 4-26 (120)
51 3bj9_1 Immunoglobulin IOTA cha 38.1 24 0.00081 19.7 2.4 23 32-54 2-24 (116)
52 1mqk_L Antibody 7E2 FV fragmen 38.1 34 0.0012 19.6 3.1 27 28-54 1-27 (120)
53 3qbt_B Inositol polyphosphate 37.8 27 0.00091 21.9 2.8 23 34-56 80-102 (140)
54 1dlf_L Anti-dansyl immunoglobu 37.7 36 0.0012 19.0 3.1 27 29-55 2-28 (113)
55 1qfw_M FV, antibody (anti beta 37.6 32 0.0011 19.0 2.9 25 29-53 2-26 (108)
56 2fp7_A Serine protease subunit 37.2 16 0.00054 20.6 1.5 21 17-37 30-50 (54)
57 2v44_A NCAM2, neural cell adhe 36.7 43 0.0015 19.4 3.5 26 28-53 2-27 (189)
58 3b9v_A Heavy chain variable do 36.6 45 0.0015 18.8 3.5 23 32-54 4-26 (120)
59 3i6s_A Subtilisin-like proteas 36.2 72 0.0025 24.8 5.5 42 25-66 582-625 (649)
60 1gyu_A Adapter-related protein 35.9 83 0.0028 19.9 5.2 49 6-54 53-102 (140)
61 3but_A Uncharacterized protein 35.5 84 0.0029 19.9 6.4 44 12-56 32-77 (136)
62 1j05_H T84.66 antibody, anti-C 35.5 58 0.002 18.4 3.9 23 32-54 4-26 (121)
63 3r8b_B G5-8, enterotoxin type 35.4 40 0.0014 19.6 3.2 29 27-55 4-32 (125)
64 2cir_A Hexose-6-phosphate muta 35.2 48 0.0016 22.3 3.9 31 18-56 260-290 (297)
65 2ywz_A NEW antigen receptor va 35.0 60 0.0021 18.1 4.1 26 30-55 2-27 (111)
66 2ijo_A Polyprotein; WEST NIle 34.8 17 0.00057 20.9 1.3 25 16-40 25-49 (58)
67 3g9a_B Minimizer; antibody com 34.5 38 0.0013 21.0 3.1 28 26-54 1-28 (139)
68 2yc1_A Single chain antibody f 34.3 44 0.0015 18.7 3.1 23 32-54 4-26 (117)
69 3ts3_A Capsid polyprotein; vir 34.1 12 0.0004 26.4 0.7 12 54-65 80-91 (208)
70 2coq_A NEW antigen receptor va 34.1 55 0.0019 18.1 3.5 24 31-54 3-26 (108)
71 2v5t_A NCAM2, N-CAM 2, neural 33.2 37 0.0013 19.4 2.8 27 27-53 1-27 (189)
72 4ffy_L DENV1-E111 single chain 33.0 38 0.0013 19.5 2.8 28 28-55 1-28 (126)
73 2hta_A Putative enzyme related 32.6 58 0.002 22.3 4.1 30 18-55 278-307 (309)
74 3iy0_H FAB 14, heavy domain; c 32.5 56 0.0019 18.7 3.5 23 32-54 4-26 (120)
75 1zvy_A Immunoglobulin heavy ch 32.4 44 0.0015 20.0 3.1 22 33-54 5-26 (136)
76 3nre_A Aldose 1-epimerase; str 32.3 55 0.0019 22.4 3.9 22 35-56 269-290 (291)
77 1j05_L T84.66 antibody, anti-C 32.1 44 0.0015 18.5 2.9 27 29-55 2-28 (111)
78 3mwx_A Aldose 1-epimerase; str 31.7 36 0.0012 23.5 2.9 24 34-57 301-324 (326)
79 1n4x_H Immunoglobulin heavy ch 31.6 62 0.0021 18.2 3.5 23 32-54 4-26 (120)
80 1div_A Ribosomal protein L9; r 31.5 27 0.00092 22.8 2.1 17 50-66 77-93 (149)
81 2xzz_A Protein-glutamine gamma 31.4 88 0.003 18.8 5.4 46 5-51 25-70 (102)
82 2d7t_H Anti polyhydroxybutyrat 31.3 58 0.002 19.4 3.5 23 32-54 4-26 (139)
83 3tqz_A Deoxyuridine 5'-triphos 30.9 90 0.0031 20.2 4.6 24 35-58 41-64 (155)
84 1iu1_A Gamma1-adaptin; coated 30.7 1.1E+02 0.0036 19.5 5.2 50 6-55 59-109 (146)
85 1a2y_B IGG1-kappa D1.3 FV (hea 30.7 49 0.0017 18.6 2.9 23 32-54 4-26 (116)
86 3r8s_H 50S ribosomal protein L 30.5 27 0.00092 22.8 2.0 17 50-66 78-94 (149)
87 1sq2_N Novel antigen receptor; 30.3 45 0.0015 18.8 2.7 25 31-55 3-27 (113)
88 3u6r_H Antibody 1:7 (heavy cha 29.9 82 0.0028 19.4 4.1 27 29-55 4-30 (149)
89 3os7_A Galactose mutarotase-li 29.9 39 0.0013 23.6 2.9 22 35-56 319-340 (341)
90 3knb_A Titin; IG-like, titin, 29.7 73 0.0025 17.5 3.6 24 30-53 7-30 (100)
91 2ggv_A NS2B, non-structural pr 29.6 18 0.00061 20.7 0.8 21 17-37 26-46 (56)
92 4do4_A Alpha-N-acetylgalactosa 29.5 87 0.003 21.7 4.6 46 6-51 321-384 (400)
93 2d9c_A Signal-regulatory prote 29.0 30 0.001 19.9 1.8 29 26-54 6-34 (136)
94 3cu7_A Complement C5; Mg domai 28.5 41 0.0014 28.6 3.1 48 6-54 843-902 (1676)
95 1yc7_A Anti-VSG immunoglobulin 28.2 79 0.0027 18.3 3.7 21 33-53 5-25 (124)
96 1kxv_C Camelid VHH domain CAB1 28.0 81 0.0028 17.8 3.6 21 33-53 5-25 (121)
97 2yzj_A 167AA long hypothetical 27.7 1.3E+02 0.0043 19.5 5.1 34 31-64 66-101 (169)
98 1nct_A Titin; cell adhesion, g 27.7 56 0.0019 18.0 2.8 26 28-53 14-39 (106)
99 3uzq_A Anti-dengue MAB 4E11; d 27.6 45 0.0015 20.7 2.6 25 28-52 1-25 (253)
100 1xo8_A AT1G01470; structural g 27.5 45 0.0016 21.2 2.6 46 11-56 52-98 (151)
101 3moq_A NEW antigen receptor va 27.3 84 0.0029 18.6 3.7 26 30-55 2-27 (126)
102 1msp_A MSP, major sperm protei 27.2 1.1E+02 0.0038 18.7 6.0 46 5-53 30-75 (126)
103 2p26_A Integrin beta-2; hybrid 27.0 38 0.0013 24.0 2.4 21 34-54 77-99 (280)
104 1rjc_A 1D2L19, camelid heavy c 26.9 40 0.0014 20.2 2.2 23 32-54 4-26 (137)
105 3lh2_H FV 4E10 heavy chain; ep 26.9 80 0.0027 19.1 3.6 25 28-53 3-27 (137)
106 1lk3_L 9D7 light chain; antige 26.4 74 0.0025 18.9 3.4 24 29-53 2-25 (210)
107 2yz1_A Tyrosine-protein phosph 26.3 47 0.0016 18.5 2.3 28 27-54 6-33 (120)
108 1dlf_H Anti-dansyl immunoglobu 26.2 67 0.0023 18.3 3.0 21 33-53 5-25 (124)
109 2p45_B Antibody CAB-RN05; seMe 26.1 72 0.0025 18.0 3.1 26 28-54 3-28 (123)
110 2i24_N NEW antigen receptor PB 26.1 61 0.0021 18.9 2.9 24 31-54 3-26 (121)
111 1tvd_A T cell receptor, ES204 25.9 66 0.0023 17.9 2.9 25 30-54 2-26 (116)
112 1nqb_A Single-chain antibody f 25.6 1.3E+02 0.0044 18.9 4.5 33 22-54 115-147 (256)
113 3cx2_A Myosin-binding protein 25.1 62 0.0021 17.7 2.7 24 30-53 6-29 (108)
114 2yc1_B Single chain antibody f 25.0 77 0.0026 19.4 3.3 29 26-54 14-42 (146)
115 3d9a_L Light chain of hyhel10 25.0 74 0.0025 18.8 3.1 25 29-53 2-26 (213)
116 2jju_A Signal regulatory prote 25.0 41 0.0014 19.3 1.9 27 28-54 3-29 (127)
117 1nbq_A JAM, junctional adhesio 24.9 55 0.0019 18.9 2.5 28 26-53 2-29 (209)
118 3esu_F Antibody 14B7* light ch 24.9 84 0.0029 19.2 3.5 27 27-53 3-29 (250)
119 3t0v_A Immunoglobulin variable 24.8 27 0.00092 20.6 1.1 24 32-55 4-27 (123)
120 3nn8_A Engineered SCFV, heavy 24.7 91 0.0031 17.8 3.5 23 32-54 4-26 (122)
121 2otu_A FV light chain variable 24.7 64 0.0022 18.0 2.7 24 30-54 4-27 (115)
122 3k25_A SLR1438 protein; struct 24.5 80 0.0027 21.4 3.6 22 35-56 267-288 (289)
123 3qyc_A VH domain of IGG molecu 24.2 94 0.0032 18.9 3.6 27 28-55 3-29 (146)
124 1aqc_A X11; PTB domain; 2.30A 24.2 30 0.001 22.5 1.3 45 16-66 63-107 (172)
125 1g1c_A Immunoglobulin-like dom 24.0 86 0.0029 16.3 3.6 23 31-53 8-30 (99)
126 1kxt_B Immunoglobulin VHH frag 23.9 56 0.0019 18.9 2.4 22 33-54 5-26 (127)
127 3oc8_A Toxin coregulated pilus 23.7 23 0.0008 23.4 0.7 18 48-65 50-67 (137)
128 3v0a_C Llama antibody F12; bot 23.7 99 0.0034 18.7 3.6 29 25-54 7-35 (152)
129 3lqw_A Deoxyuridine 5'-triphos 23.4 99 0.0034 20.3 3.8 23 35-57 53-75 (163)
130 2h32_A Immunoglobulin IOTA cha 23.4 57 0.0019 18.9 2.4 25 31-55 3-27 (126)
131 2c5d_C AXL oncogene, tyrosine- 23.3 99 0.0034 17.9 3.4 25 29-53 3-27 (195)
132 1moe_A Anti-CEA MAB T84.66; an 23.2 83 0.0028 19.0 3.2 25 29-53 2-26 (240)
133 1mqk_H Antibody 7E2 FV fragmen 23.2 76 0.0026 18.2 2.9 22 32-53 4-25 (127)
134 2x1q_A Gelsolin nanobody; cont 23.1 55 0.0019 18.9 2.3 23 32-54 4-26 (127)
135 1z9l_A Vesicle-associated memb 23.1 1.3E+02 0.0045 18.1 5.6 46 5-53 32-77 (128)
136 3q1n_A Galactose mutarotase re 22.8 99 0.0034 21.1 3.8 37 18-54 251-293 (294)
137 3k0w_A Mucosa-associated lymph 22.8 62 0.0021 19.6 2.5 29 24-52 14-42 (218)
138 3h6x_A Dutpase; jelly-roll bet 22.7 62 0.0021 21.0 2.6 21 35-55 35-55 (148)
139 1q0x_L FAB 9B1, light chain; a 22.7 95 0.0033 18.3 3.3 24 29-53 2-25 (212)
140 1waa_A Titin; metal binding pr 22.6 89 0.003 17.0 3.0 24 29-52 6-29 (93)
141 1jtp_A Single-domain antibody; 22.5 86 0.0029 18.9 3.1 22 33-54 5-26 (148)
142 3bp6_A Programmed cell death p 22.4 1E+02 0.0034 17.3 3.3 23 32-54 3-25 (117)
143 2oi9_C V beta, T cell receptor 22.3 90 0.0031 17.9 3.1 24 29-52 2-25 (121)
144 1pew_A JTO2, A lambda-6 type i 22.1 97 0.0033 17.0 3.1 21 30-51 3-23 (109)
145 1dqt_A CTLA4, cytotoxic T lymp 22.1 1.1E+02 0.0038 16.9 3.9 21 33-53 4-24 (117)
146 2y0o_A Probable D-lyxose ketol 21.8 1.3E+02 0.0043 20.0 4.1 20 31-50 122-141 (175)
147 3knb_B Obscurin-like protein 1 21.7 1.2E+02 0.004 17.0 3.6 24 30-53 15-38 (107)
148 1p4b_L Antibody variable light 21.6 1.1E+02 0.0038 18.1 3.5 27 27-54 5-31 (135)
149 1h5b_A Murine T cell receptor 20.9 82 0.0028 17.4 2.6 24 30-53 3-26 (113)
150 2xx6_A SPBC2 prophage-derived 20.7 73 0.0025 20.2 2.6 20 36-55 30-49 (142)
151 1svz_A Immunoglobulin;, single 20.6 98 0.0033 18.9 3.1 25 29-53 2-26 (247)
152 4gjt_B Poliovirus receptor-rel 20.0 64 0.0022 18.3 2.1 23 32-54 4-26 (123)
No 1
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=96.35 E-value=0.023 Score=35.16 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=41.9
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
.+-|+|.|.++ |..+|++.-++++++.. |+.+.++|++...+...|.+..
T Consensus 36 tlki~Nkt~~~-~~~~l~v~g~~~l~~~g-~~~i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 36 TLKVINKTQQV-QEYNLDVKGLNDVSWYG-KQTIQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEECSSSC-EEEEEEEESCSSCEEES-CCEEEECTTCEEEEEEEEEECG
T ss_pred EEEEEECCCCC-EEEEEEEeCCcccEEeC-CCcEEECCCCEEEEEEEEEECh
Confidence 46789999999 78888888777799886 4579999999999988887743
No 2
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=93.87 E-value=0.093 Score=37.44 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=42.8
Q ss_pred EEEEecCcccccceEEEEEecC----CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLG----DLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~G----dLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+++.|+|...|+|+++++.... .|++-.+|.+-+++|++.......+++.
T Consensus 74 L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~ 127 (273)
T 3hs8_A 74 IFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECI 127 (273)
T ss_dssp EEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEEC
T ss_pred EEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEc
Confidence 6889999999999999998766 4787778888899999998888777764
No 3
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=91.53 E-value=0.41 Score=33.26 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=42.4
Q ss_pred EEEEecCcccccceEEEEEecC----CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLG----DLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~G----dLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+++-|.|+..|+|+++++..-+ .|++--+|.+-+++|+++......+...
T Consensus 48 l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~~I~~~~q~qq~i~v~~~ 101 (247)
T 1kyf_A 48 IFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECI 101 (247)
T ss_dssp EEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCSCBCTTCEEEEEEEEEEC
T ss_pred EEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCceeCCCcEEEEEEEEEEc
Confidence 6788999999999999997754 4888778888889999999888877764
No 4
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=75.49 E-value=6.5 Score=27.62 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=36.0
Q ss_pred eEEEEecCcccccceEEEEEecC-CeEEecCCCc-eEeCCCCeEEEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLG-DLKLVERPQP-VVLAPHDFCNIKANVK 53 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~G-dLklverpq~-~tL~P~~~~~i~a~iK 53 (66)
++.+.|++...+.++.|.|-... .|....-++. -.|+|+++..+...+.
T Consensus 60 ~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 60 EMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp EEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred EEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 68899999999999999997665 5655543322 4599998776655544
No 5
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=70.09 E-value=13 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=25.7
Q ss_pred cceEEEEecCcccccceEEEEEecCCeEEecC-----------CCceEeCCCCeEEEEE
Q psy1396 3 QNNYKVLSVTGDTLQNCTLELATLGDLKLVER-----------PQPVVLAPHDFCNIKA 50 (66)
Q Consensus 3 ~~~~llvNqT~~tLQNl~vElat~GdLklver-----------pq~~tL~P~~~~~i~a 50 (66)
..-+-|.|.+.+.. .+|+-+|..+ |..++|.|++..+|.+
T Consensus 18 g~fV~l~N~s~~~~--------~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtIws 68 (121)
T 1ifr_A 18 GKFVRLRNKSNEDQ--------SMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWA 68 (121)
T ss_dssp SSEEEEEECSSSCE--------ECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEEEE
T ss_pred CCEEEEEeCCCCcc--------ccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEEEe
Confidence 44566788776432 4555555433 5678899999876665
No 6
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=69.21 E-value=3.8 Score=26.03 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=29.3
Q ss_pred cccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 13 GDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 13 ~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++|.|+.+ ++...||.+ +--.|-.+.+++...++++||
T Consensus 4 ~~~~~n~~~-~~~~pDL~V-~is~P~~v~~G~~~ti~vtV~ 42 (127)
T 3idu_A 4 YDKLSNLAT-TFEFPDLTV-EIKGPDVVGVNKLAEYEVHVK 42 (127)
T ss_dssp CBTTBCC---CCSSCCEEE-EEESCSEECTTCCEEEEEEEE
T ss_pred ccceeeEee-eccCCCeEE-EecCCCcccCCCEEEEEEEEE
Confidence 478888888 488899988 443455889999999998887
No 7
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.84 E-value=14 Score=23.97 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=25.6
Q ss_pred cceEEEEecCcccccceEEEEEecCCeEEec-----------CCCceEeCCCCeEEEEE
Q psy1396 3 QNNYKVLSVTGDTLQNCTLELATLGDLKLVE-----------RPQPVVLAPHDFCNIKA 50 (66)
Q Consensus 3 ~~~~llvNqT~~tLQNl~vElat~GdLklve-----------rpq~~tL~P~~~~~i~a 50 (66)
..-+-|.|.+.+.. .+|+-+|.. =|..++|.|++..+|.+
T Consensus 33 GefV~L~N~s~~~~--------~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIws 83 (139)
T 2lll_A 33 GKFVQLKNNSDKDQ--------SLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVWA 83 (139)
T ss_dssp CSEEEEEECSSSCE--------ECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEEE
T ss_pred CCEEEEEECCCCcc--------ccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEEe
Confidence 44566778765433 345555443 36779999999877665
No 8
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=67.40 E-value=4.3 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=22.3
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
+|+.++...|+.++..+++.+.+.+.+.
T Consensus 1 ~~~~~v~q~p~~v~v~~G~~vtL~C~~~ 28 (119)
T 2e27_L 1 MADIQMTQSPSSLSASLGGKVTITCKAN 28 (119)
T ss_dssp ---CCEEEECSEEEEETTCCEEEEEEES
T ss_pred CCcceeEecCCeEEEeCCCCEEEEEEeC
Confidence 5788888889999999999999999875
No 9
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=67.37 E-value=11 Score=29.94 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=38.8
Q ss_pred EEEEecCc-ccccceEEEEEecCCeEEec-----CCCceEeCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTG-DTLQNCTLELATLGDLKLVE-----RPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~-~tLQNl~vElat~GdLklve-----rpq~~tL~P~~~~~i~a~iKV 54 (66)
+.|.|.+. +. ++++|+|...+++.+.. .++.++|.|++...+.-.|+.
T Consensus 101 ~~v~N~~~~~~-~~v~v~l~~~~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~i~~ 154 (915)
T 2hr0_B 101 AVLYNYRQNQE-LKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVP 154 (915)
T ss_dssp EEEEECCSSCC-EEEEEEECCCTTEECSCCSSSCEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEcCCCCee-EEEEEEEecCCceEeecCCCCcceeEEEECCCCeEEEEEEEEE
Confidence 46889888 65 57999999888888764 347899999999988877775
No 10
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=67.13 E-value=4.9 Score=26.21 Aligned_cols=58 Identities=17% Similarity=0.433 Sum_probs=36.5
Q ss_pred EEEEecCccccc-ceEEEEEecCCeEEecCC--CceEeCCCCeEEEE-----------EEEEEeceeceEEE
Q psy1396 6 YKVLSVTGDTLQ-NCTLELATLGDLKLVERP--QPVVLAPHDFCNIK-----------ANVKVASTENGIIF 63 (66)
Q Consensus 6 ~llvNqT~~tLQ-Nl~vElat~GdLklverp--q~~tL~P~~~~~i~-----------a~iKVsStetGvIf 63 (66)
+-|.|.|+..|- |++++|++.||---++.- .++-|+|.+.+..+ .++||-..+-.+||
T Consensus 26 F~lyNntn~~lpGnCtl~fs~~g~~ptv~si~mGPHEigik~~ke~~~fp~~~~~~~~~t~~i~nq~ge~i~ 97 (118)
T 2kzb_A 26 FQLFNNTNSVLAGNCKLKFTDAGDKPTTQIIDMGPHEIGIKEYKEYRYFPYALDLEAGSTIEIENQYGEVIF 97 (118)
T ss_dssp EEEEECSSSCCCSSCEECCCSSSSSCCCCCEECCSCCCCTTCCEEEEECSCCCCCCTTCCEEEECTTSSEEE
T ss_pred EEEecCCceeccCccEEEEecCCCCceEEEEecCccccccCcceEEEEccccCCcccCCeEEEEecCCcEEE
Confidence 567899988874 899999999974333221 23333444455544 35666666666665
No 11
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=66.51 E-value=22 Score=22.45 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=36.7
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
...+.|.-.....+..|+|+--|. ++... .+.|+|+++..+..+.+.
T Consensus 38 ~vtV~N~G~~~a~~~~V~lyvng~--~v~t~-~v~La~G~s~tv~f~~~~ 84 (127)
T 3idu_A 38 EVHVKNLGGIGVPSTKVRVYINGT--LYKNW-TVSLGPKEEKVLTFNWTP 84 (127)
T ss_dssp EEEEEECSSSCEEEEEEEEEETTE--EEEEE-EEEECTTCEEEEEEEECC
T ss_pred EEEEEECCCCccCCcEEEEEECCE--EEeeE-EeccCCCCeEEEEEEEEc
Confidence 356789888899999999998664 34333 457999999999888874
No 12
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=65.35 E-value=26 Score=23.87 Aligned_cols=48 Identities=6% Similarity=-0.054 Sum_probs=36.2
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecC-----CCceEeCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVER-----PQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklver-----pq~~tL~P~~~~~i~a~iKV 54 (66)
..+.|.+++.+ .++++|....++..... .+.+.+.|++.+.+.-.|+.
T Consensus 102 ~~V~Ny~~~~~-~v~V~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p 154 (252)
T 3hrz_B 102 AILHNYVNEDI-YVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVP 154 (252)
T ss_dssp EEEEECSSSCE-EEEEEECCCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEcccCceE-EEEEEEEcCCceEeecCCCCceEEEEEECCCCeEEEEEEEEe
Confidence 56789988774 48888887777776542 34588999999988887765
No 13
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=59.37 E-value=11 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
|+.++...|+.++..+++.+.+.+.++-
T Consensus 2 ~~~~v~q~p~~~~v~~G~~v~L~C~~~~ 29 (109)
T 2q20_A 2 TDIQMTQSPSSLSASVGDRVTITCQASQ 29 (109)
T ss_dssp CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred CCccEEeeCCEEEecCCCcEEEEEeecc
Confidence 6778888899999999999999998753
No 14
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=58.18 E-value=24 Score=28.76 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=32.9
Q ss_pred cceEEEEecCcccccceEEEE--EecCCeEEecCCCc-eEeCCCCe
Q psy1396 3 QNNYKVLSVTGDTLQNCTLEL--ATLGDLKLVERPQP-VVLAPHDF 45 (66)
Q Consensus 3 ~~~~llvNqT~~tLQNl~vEl--at~GdLklverpq~-~tL~P~~~ 45 (66)
..++.++|-+.+.+.++++++ .....-.+.++... ++++|+++
T Consensus 684 ~~~v~vvNd~~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~~~~~ 729 (1032)
T 2vzs_A 684 NRSVVVINQTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGA 729 (1032)
T ss_dssp TCEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEEEEEEECSTTE
T ss_pred CCEEEEECCCCcccCCCEEEEEEEeCCCCEeeeeeeeeEEeCCCce
Confidence 457899999999988655554 56666677776667 88999988
No 15
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=58.15 E-value=27 Score=22.98 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=25.2
Q ss_pred cceEEEEecCcccccceEEEEEecCCeEEe-----------cCCCceEeCCCCeEEEEE
Q psy1396 3 QNNYKVLSVTGDTLQNCTLELATLGDLKLV-----------ERPQPVVLAPHDFCNIKA 50 (66)
Q Consensus 3 ~~~~llvNqT~~tLQNl~vElat~GdLklv-----------erpq~~tL~P~~~~~i~a 50 (66)
..-+-|.|...+.. .+|+-+|. .=|..++|.|++..+|.+
T Consensus 49 GefV~L~N~s~~~~--------~L~GW~L~r~vdg~~~~~y~Fp~~~~L~pg~tVtIws 99 (151)
T 1ufg_A 49 GKFVRLRNKSNEDQ--------SMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWA 99 (151)
T ss_dssp SSEEEEEECSSSCE--------ECSSCEEEEEETTSCCEEEECCTTCEECTTCEEEEEE
T ss_pred CCEEEEEECCCCcc--------ccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEEe
Confidence 34566778765432 44555543 336678899999876665
No 16
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=57.83 E-value=43 Score=28.44 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=39.8
Q ss_pred EEEEecCcccccceEEEEEecCCeEEec---CCCceEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVE---RPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklve---rpq~~tL~P~~~~~i~a~iKVs 55 (66)
+.|.|.+.+. +.++|+|...+++.+.. .++.++|.|++...+.-.|+..
T Consensus 789 ~~V~N~~~~~-~~v~V~l~~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~v~p~ 840 (1451)
T 4acq_A 789 ATVLNYLPKC-IRVSVQLEASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPK 840 (1451)
T ss_dssp EEEEECSSSC-EEEEEEECCCTTEEEEESCSCCCCEEECTTEEEEEEEEEEEC
T ss_pred EEEEeccCcc-EEEEEEEEcCCCeEeecCCCCceEEEECCCCeEEEEEEEEEC
Confidence 4678888765 57999999999999875 3689999999999888777754
No 17
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=57.05 E-value=6.1 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=26.3
Q ss_pred EEEEecCcccc-cceEEEEEecCCeEEecCCCceEeCCCC
Q psy1396 6 YKVLSVTGDTL-QNCTLELATLGDLKLVERPQPVVLAPHD 44 (66)
Q Consensus 6 ~llvNqT~~tL-QNl~vElat~GdLklverpq~~tL~P~~ 44 (66)
+.+.|.|+..| -|+++||+..| ..-+.+..+||+
T Consensus 22 F~L~N~TN~ii~GNC~~~Fs~~~-----~~~~~I~MGPHE 56 (107)
T 2kzk_A 22 FILYNKTNIIIPGNCTFEFSSQI-----SEVFSIKMGPHE 56 (107)
T ss_dssp EEEECCSSSCCCSSCEEEBCCSS-----SCCBCCBCCSSC
T ss_pred EEEecCCceEecCcceEEEecCC-----CcEEEEecCccc
Confidence 67889999887 49999999988 334456677775
No 18
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=55.96 E-value=8.1 Score=31.11 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=25.9
Q ss_pred cCCCceEeCCCCeEEEEEEEEEece--------ec-eEEEEeC
Q psy1396 33 ERPQPVVLAPHDFCNIKANVKVAST--------EN-GIIFGNI 66 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iKVsSt--------et-GvIfG~I 66 (66)
..|+.+||.|++++.++.+++.+.. .. .+.||+|
T Consensus 543 ~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i 585 (926)
T 1xf1_A 543 TSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFV 585 (926)
T ss_dssp CCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEE
T ss_pred ccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEE
Confidence 4677899999999999999987621 12 3678875
No 19
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=55.48 E-value=35 Score=21.25 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecCCCce-EeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVERPQPV-VLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklverpq~~-tL~P~~~~~i~a~iKVs 55 (66)
+.+.|.+...+.|+.++.|.-=.+||==.|+.= +|+|++...+.=.+||.
T Consensus 37 ~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~ 87 (123)
T 3mnm_A 37 SFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIE 87 (123)
T ss_dssp EEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEEE
T ss_pred EEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEEe
Confidence 567799999999999999998888887777754 49998544444444444
No 20
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=52.60 E-value=45 Score=23.89 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=37.5
Q ss_pred EEEEecCcc-cccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 6 YKVLSVTGD-TLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 6 ~llvNqT~~-tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
+-+.|.=++ .|.||+|++.+...++.+..-+.=.|.|++...+...+|-..
T Consensus 64 F~i~NTL~dq~LenVsV~~~~~d~~~~~~~ipi~~L~~~~~g~~yV~l~~~~ 115 (275)
T 1r4x_A 64 FDCTNTLNDQTLENVTVQMEPTEAYEVLXYVPARSLPYNQPGTCYTLVALPK 115 (275)
T ss_dssp EEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECTTCCEEEEEEEECCS
T ss_pred EEeEEccCcEEEeeEEEEEEcCCCceEEEeeeccccCCCCCccEEEEEEcCC
Confidence 345555444 689999999887766666666666789988888888888653
No 21
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=51.45 E-value=17 Score=20.45 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=23.1
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.|+.+|...|+.++..+++.+.+.+.+.
T Consensus 2 ~~~~~v~q~p~~~~~~~G~~v~L~C~~~ 29 (111)
T 1i3g_L 2 YKDIVLTQSHKFMSTSVGDRVSITCKAS 29 (111)
T ss_dssp --CCCEEESCSEEECCTTCCEEEEEEES
T ss_pred CccceEEEeCCEEEEcCCCCEEEEEEeC
Confidence 3677888889999999999999999875
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=50.95 E-value=42 Score=27.56 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred EEEEecCcccccceEEEEEecC-CeEEecC-------CCceEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLG-DLKLVER-------PQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~G-dLklver-------pq~~tL~P~~~~~i~a~iKVs 55 (66)
+.|.|.+.+. ++++++|...+ .+++++. .+.++|+|++...+.-.|+..
T Consensus 686 ~~v~N~~~~~-~~v~v~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~v~f~i~~~ 742 (1325)
T 2pn5_A 686 FTLFNNLGAE-YIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKAR 742 (1325)
T ss_dssp EEEEECSSSC-EEEEEEEECGGGCEEETTSCTTCCEEEEEEEECTTCCEEEEEEEEEC
T ss_pred EEEEeCCCCc-EEEEEEEeecCCceEEeccCCCCCcceEEEEECCCCeEEEEEEEEEc
Confidence 4678988877 46999997664 5888775 467899999999888777763
No 23
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=50.25 E-value=26 Score=18.52 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.0
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
|.+++...|+..+...++...+.+.+.
T Consensus 2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~ 28 (91)
T 3bfo_A 2 SKLQICVEPTSQKLMPGSTLVLQCVAV 28 (91)
T ss_dssp CCCEEEECCCCEEECTTSCEEEECEEE
T ss_pred CceEEEECCCccEecCCCcEEEEEEec
Confidence 567888888888999999988888753
No 24
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=50.01 E-value=43 Score=20.69 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=37.5
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecCCCc-eEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVERPQP-VVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklverpq~-~tL~P~~~~~i~a~iKVs 55 (66)
+.+.|.+...+.|+.++.|.-=.+||==.|+. -+|.|++...|.=.+||.
T Consensus 35 ~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~ 85 (122)
T 3zy7_A 35 IQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVL 85 (122)
T ss_dssp EEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEE
T ss_pred EEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEE
Confidence 56789999999999999999888888777776 558885544444444443
No 25
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=48.61 E-value=26 Score=20.24 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=21.1
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
+++.|.. |+.++..+++.+.+.+.++
T Consensus 2 ~~~~v~q-p~~~~v~~G~~vtL~C~~s 27 (121)
T 2xt1_B 2 AQVQLVE-SGGGLVQAGGSLRLSCAAS 27 (121)
T ss_dssp CCSEEEE-ECCEEEETTCCEEEEEEEE
T ss_pred CcceEEc-CCCEEEeCCCCEEEEEEec
Confidence 4556554 7789999999999999986
No 26
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=46.83 E-value=55 Score=23.74 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=38.7
Q ss_pred EEEEecCcc-cccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 6 YKVLSVTGD-TLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 6 ~llvNqT~~-tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
|-+.|.=++ .|.||+|++.+...+..+..-+.=.|.|++...+...+|-..
T Consensus 111 F~~~NTL~dq~LenV~V~~~~~~~~~~~~~ip~~~L~~~~~g~~yv~~~~~~ 162 (322)
T 1pzd_A 111 FDCTNTLNDQTLENVTVQMEPSEAYEVLCYVPARSLPYNQPGTCYTLVALPK 162 (322)
T ss_dssp EEEEECCTTEEEEEEEEEEEESSSCEEEEEECEEEECBTCCEEEEEEEECCS
T ss_pred EEEEEccCceEEeeEEEEEecCCCceEEEEEEHhHCCCCCCeeEEEEEEecC
Confidence 345555444 689999999987668877777777799988888888888653
No 27
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=46.38 E-value=22 Score=19.58 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.2
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iKV 54 (66)
.++...|..++..+++.+.+.+.+.-
T Consensus 2 ~~v~q~p~~~~~~~G~~v~L~C~~~~ 27 (108)
T 1jhl_L 2 IELTQSPSYLVASPGETITINCRASK 27 (108)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESS
T ss_pred CceeccCCeeEEcCCCCEEEEeEECC
Confidence 46777788899999999999998753
No 28
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=46.09 E-value=23 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.022 Sum_probs=31.0
Q ss_pred ceEEEEEe-cCC-----eEEecCCCceEeCCCCeEEEEEEEEEeceece
Q psy1396 18 NCTLELAT-LGD-----LKLVERPQPVVLAPHDFCNIKANVKVASTENG 60 (66)
Q Consensus 18 Nl~vElat-~Gd-----Lklverpq~~tL~P~~~~~i~a~iKVsStetG 60 (66)
-|+||=.+ ..| -.+-+|+....|+|+++.....+|.+.+....
T Consensus 249 fvciEP~tg~~Da~n~~~~~~~k~gl~~L~PGe~~~~~~~i~~~~~~~~ 297 (307)
T 3dcd_A 249 YVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMTYHSTTDE 297 (307)
T ss_dssp EEEEEEEESCCCBTTCCSBGGGCTTCEEECTTCEEEEEEEEEEECSSCS
T ss_pred EEEEccccCCCCCCCCCCchhccCCCEEECCCCEEEEEEEEEEEECCcc
Confidence 46777654 111 22346778899999999999999999876554
No 29
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=45.79 E-value=56 Score=21.68 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=37.0
Q ss_pred cCcccccceEEEEEecC-CeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 11 VTGDTLQNCTLELATLG-DLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 11 qT~~tLQNl~vElat~G-dLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
-..-.+..+..+|.-.| .+-=-+.|+..++.+++...+...++|+.
T Consensus 75 ~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~v~~ 121 (174)
T 1yyc_A 75 SQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAY 121 (174)
T ss_dssp SSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEEESH
T ss_pred CCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEEEEH
Confidence 45567888999997766 33345788899999999999999999974
No 30
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*
Probab=45.60 E-value=13 Score=22.71 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceEeCCCCeEEEEEEEEEeceece
Q psy1396 36 QPVVLAPHDFCNIKANVKVASTENG 60 (66)
Q Consensus 36 q~~tL~P~~~~~i~a~iKVsStetG 60 (66)
|.+++.|+..-++.+-+|+...++|
T Consensus 53 Q~v~v~~~~~Y~ls~wvk~~~~g~~ 77 (147)
T 2zex_A 53 QDIPLKPNTTYILGAWAKFDSKPAG 77 (147)
T ss_dssp EECCCCTTCEEEEEEEEEESSCCSS
T ss_pred EEEEECCCCEEEEEEEEEeccCCCc
Confidence 5778999999999999999887766
No 31
>3bqo_B TERF1-interacting nuclear factor 2; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens}
Probab=44.51 E-value=5.5 Score=19.97 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=12.0
Q ss_pred ceEeCCCCeEEEEEE
Q psy1396 37 PVVLAPHDFCNIKAN 51 (66)
Q Consensus 37 ~~tL~P~~~~~i~a~ 51 (66)
.++|+|-+.+++++.
T Consensus 2 ~FNLAPLGrR~i~s~ 16 (26)
T 3bqo_B 2 HFNLAPLGRRRVQSQ 16 (26)
T ss_pred ccccccccccccccc
Confidence 378999999988764
No 32
>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B
Probab=43.50 E-value=40 Score=19.19 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.3
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.++..+++.+.+.+.+.-
T Consensus 4 v~qp~~~~~~~G~~vtL~C~~~~ 26 (122)
T 1xiw_D 4 LQQSGPELVKPGASMKISCKASG 26 (122)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEeCCCcEEEEEEeeC
Confidence 45588889999999999999863
No 33
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=43.31 E-value=53 Score=23.93 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=37.2
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
.+.|.|+...++.+..+++....+...=+ ....+.|++...++.+|.+.
T Consensus 378 ~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~t~~~~vt~~ 426 (601)
T 1w8o_A 378 PVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPLMPGRQAKGQVTITVP 426 (601)
T ss_dssp EEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCBCTTCEEEEEEEEECC
T ss_pred EEEEECCCceeccCceEEEecCCCcEEec--cccccCCCCceEEEEEEecC
Confidence 46688998889999999988877776655 35668888888776666664
No 34
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=43.12 E-value=57 Score=27.75 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=38.1
Q ss_pred EEEEecCc-ccccceEEEEEecCCeEEec-----CCCceEeCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTG-DTLQNCTLELATLGDLKLVE-----RPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~-~tLQNl~vElat~GdLklve-----rpq~~tL~P~~~~~i~a~iKV 54 (66)
..|.|.+. +. ++++++|...+++.+.. ..+.++|.|++...+.-.|+.
T Consensus 848 ~~V~N~~~~~~-~~v~v~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p 901 (1661)
T 2b39_A 848 AILYNYREAEN-LKVRVELLYNPAFCSLATAKKRHQQTITIPARSSVAVPYVIVP 901 (1661)
T ss_dssp EEEEECCTTCC-EEEEEEECCCTTEECSSCSSCCCEEEEEECTTCEEEEEEEEEE
T ss_pred EEEEcCCCCcc-EEEEEEEcCCCCeEeecCCCCcceEEEEECCCCcEEEEEEEEE
Confidence 46789887 65 56999999888888764 346889999999988877765
No 35
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.11 E-value=51 Score=19.54 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=30.9
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.+.|-|.... ....++.......+ .|....|.|+++..++.+++
T Consensus 46 ~~~l~N~g~~---~~~f~~~~~~~F~i--~P~~g~L~pg~~~~i~V~F~ 89 (122)
T 2ys4_A 46 ILLVRNIGNK---NAVFHIKTCRPFSI--EPAIGTLNVGESMQLEVEFE 89 (122)
T ss_dssp EEEEECCSSS---CEEEEEECCTTEEE--ESSEEEECTTCEEEEEEEEC
T ss_pred EEEEEECCCC---CEEEEEecCCCeEE--ECCcCEECCCCEEEEEEEEE
Confidence 3556664443 34566666667776 58889999999999887764
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=42.87 E-value=55 Score=28.44 Aligned_cols=48 Identities=6% Similarity=-0.098 Sum_probs=38.4
Q ss_pred EEEEecCcccccceEEEEEecCCeEEec-----CCCceEeCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVE-----RPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklve-----rpq~~tL~P~~~~~i~a~iKV 54 (66)
..|.|.+++. +.++|+|...+++.... ..+.+++.|++...+.-.|+.
T Consensus 834 v~VfNy~~~~-~~V~V~L~~s~~~~~~~~~~~~~~q~v~v~a~~~~~v~f~i~p 886 (1642)
T 3prx_B 834 AILHNYVNED-IYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVP 886 (1642)
T ss_dssp EEEEECSSSC-EEEEEEECCCTTEEESCCSSSCCEEEEEECSSEEEEEEEEEEE
T ss_pred EEEEcCCCCc-EEEEEEEEcCCCeEeeccCCCcceeEEEECCCCeEEEEEEEEE
Confidence 5678988865 67999999888988874 246889999999988877765
No 37
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}
Probab=42.87 E-value=18 Score=23.18 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred eEEecCC-----CceEeCCCCeEEEEEEEEEeceece
Q psy1396 29 LKLVERP-----QPVVLAPHDFCNIKANVKVASTENG 60 (66)
Q Consensus 29 Lklverp-----q~~tL~P~~~~~i~a~iKVsStetG 60 (66)
||+-.++ |.++|.|+-.-.+.+-+|+++...+
T Consensus 38 lk~s~~~~~~~~Q~V~l~PnttYtLSa~vk~~~~~g~ 74 (144)
T 2zez_A 38 FKLSGGKQAGMGQKVALKPNTTYILGAWGKFTAKPGT 74 (144)
T ss_dssp EEECTTSCEEEEEECCCCTTCEEEEEEEEEESSCCSS
T ss_pred eEEecCCcccEEEEEEECCCCEEEEEEEEEEcccCCc
Confidence 5555555 5788999999999999999974444
No 38
>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, mercury derivative; 1.05A {Escherichia coli} SCOP: b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A* 2hr6_A* 2hrm_A* 1rnj_A* 1syl_A*
Probab=41.93 E-value=50 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.6
Q ss_pred ceEeCCCCeEEEEEEEEEecee---ceEEEE
Q psy1396 37 PVVLAPHDFCNIKANVKVASTE---NGIIFG 64 (66)
Q Consensus 37 ~~tL~P~~~~~i~a~iKVsSte---tGvIfG 64 (66)
++.|.|+++..+.+-+++.-.+ .|.|++
T Consensus 40 ~~~l~Pg~~~lv~Tg~~i~iP~~g~~~~i~p 70 (152)
T 1euw_A 40 AVELAPGDTTLVPTGLAIHIADPSLAAMMLP 70 (152)
T ss_dssp CEEECTTCEEEEEEEEEEECCCTTEEEEEEE
T ss_pred CEEECCCCEEEEEcceEEECCCCCEEEEEEe
Confidence 4899999999999999997655 455554
No 39
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=41.86 E-value=78 Score=24.11 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=31.3
Q ss_pred EEEEecCCeEEecCCCceEe-CCCCeEEEEEEEEEeceeceEEEEeC
Q psy1396 21 LELATLGDLKLVERPQPVVL-APHDFCNIKANVKVASTENGIIFGNI 66 (66)
Q Consensus 21 vElat~GdLklverpq~~tL-~P~~~~~i~a~iKVsStetGvIfG~I 66 (66)
+.+..--+++|--.|..+++ ++++.+.++.+++-. ...+..||.+
T Consensus 557 ~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l 602 (621)
T 3vta_A 557 AMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASL 602 (621)
T ss_dssp EEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEE
T ss_pred EEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEE
Confidence 33333345777778888888 567888888888754 4567888864
No 40
>3u1j_A Serine protease subunit NS2B; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_A
Probab=41.32 E-value=15 Score=20.43 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=19.3
Q ss_pred cccceEEEEEecCCeEEecCCCc
Q psy1396 15 TLQNCTLELATLGDLKLVERPQP 37 (66)
Q Consensus 15 tLQNl~vElat~GdLklverpq~ 37 (66)
+-.++.|.+-..|+++++++|..
T Consensus 26 ~s~rldV~~d~~G~f~l~~~~~~ 48 (51)
T 3u1j_A 26 VSHNLMITVDDDGTMRIKDDETE 48 (51)
T ss_pred CcceEEEEECCCCCeEeccCCCc
Confidence 34678899999999999999864
No 41
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=40.96 E-value=57 Score=19.50 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=21.5
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
+++|.+.| +.+..+++.+.+.++++-.+
T Consensus 5 ~~~l~q~~-~~~v~~G~~vtL~C~~s~~~ 32 (136)
T 3tpk_A 5 EVQLVESG-GGSVQPGGSLRLSCTASGYT 32 (136)
T ss_dssp CEEEEEEC-CEEECTTCCEEEEEEEEESG
T ss_pred cEEEEeeC-CEEEccCCCEEEEEEEcccc
Confidence 45666655 58899999999999987543
No 42
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=40.93 E-value=32 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=20.6
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
.+++|.+.|. ++..+++.+.+.+++.-
T Consensus 2 ~~v~l~q~~~-~~v~~G~~vtL~C~~s~ 28 (123)
T 3k1k_C 2 AQVQLVESGG-ALVQPGGSLRLSCAASG 28 (123)
T ss_dssp -CCEEEEECC-CEECTTCCEEEEEEEES
T ss_pred CcceEEecCC-EEECCCCCEEEEEEeeC
Confidence 4566666665 78999999999999864
No 43
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Probab=40.56 E-value=51 Score=26.19 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=32.4
Q ss_pred ceEEEEecCcccccc--eEEEEEecCCeEEecCC--CceEeCCCCeEEE
Q psy1396 4 NNYKVLSVTGDTLQN--CTLELATLGDLKLVERP--QPVVLAPHDFCNI 48 (66)
Q Consensus 4 ~~~llvNqT~~tLQN--l~vElat~GdLklverp--q~~tL~P~~~~~i 48 (66)
-++.++|-+.+.++. |.+++.....-.+.+.- ..++++|++...+
T Consensus 667 ~~v~vvNd~~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~v~~~~~~~v 715 (848)
T 2je8_A 667 LSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEVPANTSKCV 715 (848)
T ss_dssp EEEEEEECCSSCEEEEEEEEEEEETTSCEEEEEEEEEEEEECTTEEEEE
T ss_pred EEEEEEECCcccccCcEEEEEEEeCCCcEEEEEeeeeeEEECCCceEEE
Confidence 478999999999886 55556665554555555 5678888887765
No 44
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=40.55 E-value=46 Score=25.59 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=37.0
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecC---CCceEeCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVER---PQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklver---pq~~tL~P~~~~~i~a~iKVs 55 (66)
..|.|.+.+. ..++|.|...+++.+... .+.+++.|++...+.-.|+..
T Consensus 174 ~~V~N~~~~~-~~v~v~l~~~~~~~~~~~~~~~~~~~v~a~~~~~v~f~i~~~ 225 (767)
T 4fxk_B 174 PVLYNYLDKN-LTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPT 225 (767)
T ss_dssp CEEEECSSSC-EEEEEEECCCTTEECSSSSCCCEEEEECSSCEEECCEEEEEC
T ss_pred EEEEECCCCC-EEEEEEEEecCCeEEecCCceeEEEEEcCCCeEEEEEEEEEC
Confidence 4678888765 468999998888887643 457889999988877666543
No 45
>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A
Probab=40.28 E-value=30 Score=19.93 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=19.2
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.++++-
T Consensus 4 v~qp~~~~v~~G~~vtL~C~~s~ 26 (127)
T 1i3u_A 4 LQESGGGLVQAGDSLKLSCEASG 26 (127)
T ss_dssp EEEESCEECCTTCCEEEEEEEES
T ss_pred EECCCCEEEeCCCcEEEEEEecC
Confidence 44588899999999999999863
No 46
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=39.85 E-value=32 Score=19.25 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
++|...|+.++..+++.+.+.+.++-+
T Consensus 2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~ 28 (114)
T 1eeq_A 2 IVLTQSPDSLAVSLGERATINCKSSQS 28 (114)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred CceEecCCeEEEcCCCeEEEEEEcCCC
Confidence 566777889999999999999987643
No 47
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=39.29 E-value=29 Score=19.20 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++...|..++..+++.+.+.+.+.
T Consensus 2 ~~v~q~p~~~~~~~G~~v~L~C~~~ 26 (107)
T 1i8k_A 2 IELTQSPASLSVATGEKVTIRCMTS 26 (107)
T ss_dssp CCEEEECSEEECCTTCCEEEEEEES
T ss_pred CceEeCCCeEEecCCCCEEEEEEEC
Confidence 4566778889999999999999875
No 48
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=39.03 E-value=34 Score=21.95 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=24.3
Q ss_pred ecCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 25 TLGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 25 t~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
-.|...|...|..++..+++...+.++++
T Consensus 6 ~~gs~~v~Q~P~~v~v~~G~sVtL~C~~s 34 (166)
T 3dmm_C 6 KPQAPELRIFPKKMDAELGQKVDLVCEVL 34 (166)
T ss_dssp ---CCEEEEECSCBCCCTTCCEEEEEEEE
T ss_pred ccCCccEEEeCCeEEEcCCCCEEEEEEEe
Confidence 35778888999999999999999999987
No 49
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E
Probab=38.56 E-value=55 Score=19.28 Aligned_cols=23 Identities=0% Similarity=-0.194 Sum_probs=19.2
Q ss_pred cCCCceEeCCCCeEEEEEEEEEe
Q psy1396 33 ERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iKVs 55 (66)
+.|+.++..+++.+.+.+++.-+
T Consensus 5 ~qp~~~~v~~G~~vtL~C~~s~~ 27 (134)
T 1zvh_A 5 VESGGGSVQAGGSLRLSCAASGY 27 (134)
T ss_dssp EEECCEEECTTCCEEEEEEEEES
T ss_pred EcCCCEEEccCCCEEEEEEeCCC
Confidence 44788999999999999998743
No 50
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=38.52 E-value=49 Score=18.68 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.3
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.++..+++.+.+.+.+.-
T Consensus 4 v~qp~~~~~~~G~~v~L~C~~~~ 26 (120)
T 1mfa_H 4 VQQSGTVVARPGASVKMSCKASG 26 (120)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEeCCCCEEEEEEeeC
Confidence 45588899999999999999863
No 51
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=38.13 E-value=24 Score=19.73 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.6
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.++..+++.+.+.+++.-
T Consensus 2 v~q~~~~~~~~G~~v~L~C~~~~ 24 (116)
T 3bj9_1 2 LHQPPAMSSALGTTIRLTCTLRN 24 (116)
T ss_dssp EECCSEEEEETTCCEEEEEEECS
T ss_pred EecCCcEEEcCCCcEEEEEEeec
Confidence 56677888889999999888764
No 52
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=38.06 E-value=34 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=22.1
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
+.++...|+.++..+++.+.+.+.++-
T Consensus 1 ~~~v~q~p~~~~v~~G~~v~L~C~~~~ 27 (120)
T 1mqk_L 1 DIELTQTPVSLSASVGETVTITCRASE 27 (120)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred CCceEecCCeEEEcCCCcEEEEEEeCC
Confidence 356777788999999999999998753
No 53
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=37.83 E-value=27 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCCceEeCCCCeEEEEEEEEEec
Q psy1396 34 RPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 34 rpq~~tL~P~~~~~i~a~iKVsS 56 (66)
.|..-+|.|+++..|..++.|+.
T Consensus 80 ~P~~G~L~Pge~~~I~v~~~v~~ 102 (140)
T 3qbt_B 80 EPFEGYLEPNETVDISLDVYVSK 102 (140)
T ss_dssp ESCEEEECTTCEEEEEEEECBCH
T ss_pred CCcccccCCCCeeEEEEEEEEcc
Confidence 48899999999999999999865
No 54
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=37.70 E-value=36 Score=19.00 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=22.0
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
.+|...|+.++..+++.+.+.+.+.-+
T Consensus 2 ~~v~q~p~~~~v~~G~~v~L~C~~~~~ 28 (113)
T 1dlf_L 2 VVMTQTPLSLPVSLGNQASISCRSSQS 28 (113)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred CcEEEeCCEEEEcCCCCEEEEEEcccc
Confidence 456677889999999999999987543
No 55
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=37.59 E-value=32 Score=19.04 Aligned_cols=25 Identities=8% Similarity=0.331 Sum_probs=20.8
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++...|+.++..+++.+.+.+.+.
T Consensus 2 ~~v~q~p~~~~v~~G~~v~L~C~~~ 26 (108)
T 1qfw_M 2 IELTQSPKSMSMSVGERVTLSCKAS 26 (108)
T ss_dssp CCEEEECSCEECCTTCCEEEEEEES
T ss_pred CcEEEeCCeEEEcCCCCEEEEeeeC
Confidence 4566778889999999999999875
No 56
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=37.16 E-value=16 Score=20.62 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=14.3
Q ss_pred cceEEEEEecCCeEEecCCCc
Q psy1396 17 QNCTLELATLGDLKLVERPQP 37 (66)
Q Consensus 17 QNl~vElat~GdLklverpq~ 37 (66)
.++.|.+-..|++++++.|.+
T Consensus 30 ~rldV~~d~~G~f~l~~ee~~ 50 (54)
T 2fp7_A 30 ERVDVRLDDDGNFQLMNDPGA 50 (54)
T ss_dssp CEEEEEECTTSCEEEC-----
T ss_pred ceEEEEECCCCCEEEccCCCC
Confidence 568888999999999998764
No 57
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=36.72 E-value=43 Score=19.36 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=22.0
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.|++...|+.+++..++...+.+.+.
T Consensus 2 ~l~~~~~~~~~~v~~G~~v~L~C~~~ 27 (189)
T 2v44_A 2 LLQVTISLSKVELSVGESKFFTCTAI 27 (189)
T ss_dssp EEEEEESCSEEEEETTCCEEEEEEEE
T ss_pred ceEEEecCCceEEecCCcEEEEEEee
Confidence 47888889999999999998888774
No 58
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=36.64 E-value=45 Score=18.76 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=19.0
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.+.++-
T Consensus 4 v~qp~~~~~~~G~~vtL~C~~~~ 26 (120)
T 3b9v_A 4 LVESGGGLVQPGGSLRLSCAASG 26 (120)
T ss_dssp EEEECCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEeCCccEEEEEEeeC
Confidence 34588899999999999999863
No 59
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=36.18 E-value=72 Score=24.78 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=30.8
Q ss_pred ecCCeEEecCCCceEeC-CCCeEEEEEEEEEece-eceEEEEeC
Q psy1396 25 TLGDLKLVERPQPVVLA-PHDFCNIKANVKVAST-ENGIIFGNI 66 (66)
Q Consensus 25 t~GdLklverpq~~tL~-P~~~~~i~a~iKVsSt-etGvIfG~I 66 (66)
.-..++|--.|..+... +++.+.++.+++.... ..+..||.+
T Consensus 582 ~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l 625 (649)
T 3i6s_A 582 APKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSI 625 (649)
T ss_dssp CCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEE
T ss_pred cCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEE
Confidence 34468888889999984 8999999999987643 455788874
No 60
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=35.88 E-value=83 Score=19.93 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=35.2
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecCCCceE-eCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVERPQPVV-LAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklverpq~~t-L~P~~~~~i~a~iKV 54 (66)
+.+.|.+...+.|+.++.|.-=.+||-=.|+.=+ |.|++...|.=.++|
T Consensus 53 ~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I 102 (140)
T 1gyu_A 53 IQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV 102 (140)
T ss_dssp EEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEE
T ss_pred EEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEE
Confidence 4567999999999999999888888777776444 777554434444444
No 61
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=35.52 E-value=84 Score=19.86 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=33.3
Q ss_pred CcccccceEEEEEecCCeEEec--CCCceEeCCCCeEEEEEEEEEec
Q psy1396 12 TGDTLQNCTLELATLGDLKLVE--RPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 12 T~~tLQNl~vElat~GdLklve--rpq~~tL~P~~~~~i~a~iKVsS 56 (66)
..-.++.+..++.-. ++++.+ ..+.++++|++...++..+.++.
T Consensus 32 ~~l~i~gl~y~v~ln-g~~la~G~s~~~~~I~~~g~~~v~v~~~i~~ 77 (136)
T 3but_A 32 VPIVVSGYHYTIEMN-GVKVADGYENSPVTVKPASATTLKFSLRLNN 77 (136)
T ss_dssp SCEEEEEEEEEEEET-TEEEEEEEECCCEEECTTCEEEEEEEEEEEH
T ss_pred cceeeeceEEEEEEC-CEEEEeeeecCceEECCCCcEEEEEEEEEch
Confidence 344567776666654 578776 47899999999999999988864
No 62
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=35.47 E-value=58 Score=18.37 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=19.0
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.+...+++.+.+.+.+.-
T Consensus 4 v~qp~~~~~~~G~~vtL~C~~~~ 26 (121)
T 1j05_H 4 LQQSGAELVEPGASVKLSCTASG 26 (121)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEeCCCcEEEEEEecC
Confidence 45588889999999999998863
No 63
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=35.45 E-value=40 Score=19.56 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=24.2
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
.+.+|.-.|..++..+++...+.+++.-+
T Consensus 4 ~~~~V~Q~p~~~~v~~G~~vtL~C~~~~~ 32 (125)
T 3r8b_B 4 LEAAVTQSPRNKVAVTGEKVTLSCKQTNS 32 (125)
T ss_dssp -CCEEEEECSEEEEETTCCEEEEEEEESC
T ss_pred ccCcEEecCCeEEEcCCCcEEEEEEECCC
Confidence 47788888999999999999999998643
No 64
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=35.16 E-value=48 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=23.8
Q ss_pred ceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 18 NCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 18 Nl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
-|+||=... ...+.|+|++..+....+++.+
T Consensus 260 ~vClEp~~~--------~~~~~L~pGe~~~~~~~~~~~~ 290 (297)
T 2cir_A 260 MICIEPGHV--------HDFISLAPGKKWNAYQLLCKEE 290 (297)
T ss_dssp EEEEEEEEE--------EEEEEECTTCEEEEEEEEECC-
T ss_pred EEEECceEC--------CCCEEECCCCeEEEEEEEEEEe
Confidence 477776653 3457899999999999999964
No 65
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=35.03 E-value=60 Score=18.07 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=19.4
Q ss_pred EEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+|...|+.++..+++.+.+.+.+.-+
T Consensus 2 ~v~q~p~~~~~~~G~~v~L~C~~~~~ 27 (111)
T 2ywz_A 2 WVDQTPRTITKETGESLTIKCVLKDH 27 (111)
T ss_dssp EEEEECSEEEECTTCCEEEEEEEESC
T ss_pred eeEECCCcEEEccCCCEEEEeEECCC
Confidence 34556778888888888888887643
No 66
>2ijo_A Polyprotein; WEST NIle virus, protease, aprotinin, BPTI, NS2B, NS3, flavivirus, serine protease; 2.30A {West nile virus}
Probab=34.82 E-value=17 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=15.7
Q ss_pred ccceEEEEEecCCeEEecCCCceEe
Q psy1396 16 LQNCTLELATLGDLKLVERPQPVVL 40 (66)
Q Consensus 16 LQNl~vElat~GdLklverpq~~tL 40 (66)
-.++.|.+-..|++++++.|.+-..
T Consensus 25 s~rldV~~d~~G~f~L~~ee~~~~~ 49 (58)
T 2ijo_A 25 SERVDVRLDDDGNFQLMNDPGAPWA 49 (58)
T ss_dssp CCEEEEEECTTSCEEETC-------
T ss_pred cceEEEEECCCCCEEEccCCCCceE
Confidence 3568888999999999998875443
No 67
>3g9a_B Minimizer; antibody complex, chromophore, luminescence, photoprotein, fluorescent protein/immune system complex, nanobody; HET: GYS; 1.61A {Lama pacos} SCOP: b.1.1.1
Probab=34.50 E-value=38 Score=20.98 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=20.0
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
+++++|.+.| ..+..+++...+.++..-
T Consensus 1 ~~~v~l~Qs~-~v~v~~G~sVtL~C~~s~ 28 (139)
T 3g9a_B 1 MADVQLQESG-GGSVQAGGSLRLSCAASG 28 (139)
T ss_dssp ---CCEEEES-CEEECTTCCEEEEEEECS
T ss_pred CCceeEEcCC-CEEEecCCCEEEEEEEcC
Confidence 3466666655 589999999999998753
No 68
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=34.27 E-value=44 Score=18.67 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=19.0
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.++++-
T Consensus 4 v~qp~~~~~~~G~~vtL~C~~~~ 26 (117)
T 2yc1_A 4 LVESGGGLVQPGGSLRLSCTGSG 26 (117)
T ss_dssp EEEECCEEECTTCCEEEEEEEES
T ss_pred EEcCCCEEEcCCCeEEEEEEecC
Confidence 34588899999999999999863
No 69
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=34.14 E-value=12 Score=26.44 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.6
Q ss_pred EeceeceEEEEe
Q psy1396 54 VASTENGIIFGN 65 (66)
Q Consensus 54 VsStetGvIfG~ 65 (66)
.+-|.||||||.
T Consensus 80 lDvTqTGViFgq 91 (208)
T 3ts3_A 80 LDVTQTGVLFGQ 91 (208)
T ss_dssp EECTTTCEEEEC
T ss_pred eeeeecceEecc
Confidence 356899999994
No 70
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=34.11 E-value=55 Score=18.09 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=18.5
Q ss_pred EecCCCceEeCCCCeEEEEEEEEE
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iKV 54 (66)
+...|+.++..+++.+.+.+.+.-
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~ 26 (108)
T 2coq_A 3 VDQTPRIATKETGESLTINCVLRD 26 (108)
T ss_dssp EEEECSEEEECTTCCEEEEEEECC
T ss_pred eEeCCceEEEcCCCCEEEEeEeCC
Confidence 445677888889999888888754
No 71
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=33.21 E-value=37 Score=19.43 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=21.8
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
|.+++...|++.++..++...+.+.+.
T Consensus 1 s~~~~~~~~~~~~v~~G~~v~l~C~~~ 27 (189)
T 2v5t_A 1 SMLTFREVVSPQEFKQGEDAEVVCRVS 27 (189)
T ss_dssp CCCEEEECCSSEEEETTSCEEECCEEE
T ss_pred CCceeeccCCCEEEeCCCcEEEEEEEc
Confidence 456788888888888999888888764
No 72
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=33.00 E-value=38 Score=19.46 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=22.5
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+++|...|+.++..+++.+.+.+.+.-+
T Consensus 1 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~ 28 (126)
T 4ffy_L 1 NIVLTQSPASLAVSLGQRATISCRASES 28 (126)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSC
T ss_pred CCcEEeCCCeEEEeCCCCEEEEEecCCC
Confidence 3567777888999999999999987543
No 73
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=32.62 E-value=58 Score=22.27 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=24.0
Q ss_pred ceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 18 NCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 18 Nl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
-|+||=.+. ...+.|+|++..+.+..+++.
T Consensus 278 ~vClEp~~~--------~~~~~L~PGe~~~~~~~~~~~ 307 (309)
T 2hta_A 278 FVCVETVYA--------TAPQQATEEKPSRLAQTICVA 307 (309)
T ss_dssp EEEEEEEEE--------EEEEEEBTTBCEEEEEEEEEE
T ss_pred EEEECeeec--------CCCEEECCCCeEEEEEEEEEe
Confidence 478887664 445789999999999999884
No 74
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=32.46 E-value=56 Score=18.68 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=18.7
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.+++.-
T Consensus 4 v~q~~~~~v~~G~~vtL~C~~s~ 26 (120)
T 3iy0_H 4 LQQSGTELVAPGGGVKLSCGASG 26 (120)
T ss_dssp EEECCCEEECSSCCEEEEEEEES
T ss_pred EEecCCEEecCCCCEEEEEEeEC
Confidence 34566799999999999999763
No 75
>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1
Probab=32.39 E-value=44 Score=19.96 Aligned_cols=22 Identities=0% Similarity=-0.170 Sum_probs=18.6
Q ss_pred cCCCceEeCCCCeEEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iKV 54 (66)
+.|+.+...+++.+.+.+++.-
T Consensus 5 ~qp~~~~v~~G~~vtL~C~~s~ 26 (136)
T 1zvy_A 5 VESGGGSVQAGGSLRLSCAASG 26 (136)
T ss_dssp EEECCEECCTTCCEEEEEEEES
T ss_pred EcCCCEEEeCCCCEEEEEEecC
Confidence 4478899999999999999863
No 76
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Probab=32.30 E-value=55 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.0
Q ss_pred CCceEeCCCCeEEEEEEEEEec
Q psy1396 35 PQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVsS 56 (66)
|..+.|.|++..+.+..+++++
T Consensus 269 ~~~~~L~PGe~~~~~~~~~~~~ 290 (291)
T 3nre_A 269 GDLIALAPGESTTSEMSLRVEW 290 (291)
T ss_dssp TTCEEECTTCEEEEEEEEEEEE
T ss_pred CCCEEECCCCEEEEEEEEEEEe
Confidence 3468899999999999999975
No 77
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=32.14 E-value=44 Score=18.45 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=21.4
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
.+|...|+.++..+++.+.+.+.+.-+
T Consensus 2 ~~v~q~p~~~~~~~G~~v~L~C~~~~~ 28 (111)
T 1j05_L 2 IVLTQSPASLAVSLGQRATMSCRAGES 28 (111)
T ss_dssp CCEEEECSEEECCTTSCEEEEEEESSC
T ss_pred CcEEEeCCEEEEeCCCCEEEEeecCCC
Confidence 456667888999999999999987543
No 78
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=31.65 E-value=36 Score=23.50 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.8
Q ss_pred CCCceEeCCCCeEEEEEEEEEece
Q psy1396 34 RPQPVVLAPHDFCNIKANVKVAST 57 (66)
Q Consensus 34 rpq~~tL~P~~~~~i~a~iKVsSt 57 (66)
+...+.|+|++.......|++..+
T Consensus 301 ~~g~~~L~PGe~~~~~~~i~~~~~ 324 (326)
T 3mwx_A 301 LTGLQVLEPGEETTAKSSITIELN 324 (326)
T ss_dssp HHCCEEECTTCEEEEEEEEEEEEC
T ss_pred ccCCeEECCCCeEEEEEEEEEEec
Confidence 345688999999999999998643
No 79
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=31.60 E-value=62 Score=18.16 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.8
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.++..+++.+.+.+.++-
T Consensus 4 v~qp~~~~~~~G~~vtL~C~~~~ 26 (120)
T 1n4x_H 4 LQQSGPELKKPGETVKISCKATN 26 (120)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEcCCCeEEEEEEecC
Confidence 34577889999999999999763
No 80
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=31.47 E-value=27 Score=22.76 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.2
Q ss_pred EEEEEeceeceEEEEeC
Q psy1396 50 ANVKVASTENGIIFGNI 66 (66)
Q Consensus 50 a~iKVsStetGvIfG~I 66 (66)
..|+...-|.|-+||.|
T Consensus 77 v~i~~k~g~~gklfGSV 93 (149)
T 1div_A 77 VTIPAKAGEGGRLFGSI 93 (149)
T ss_dssp EEEEECBCGGGEEEEEE
T ss_pred EEEEEEeCCCCcEEeec
Confidence 56777888999999986
No 81
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=31.39 E-value=88 Score=18.83 Aligned_cols=46 Identities=11% Similarity=-0.004 Sum_probs=32.6
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKAN 51 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~ 51 (66)
.+.+.|-=+.+|+|+.+-+--.|=++-.... .=.++|++..+++-.
T Consensus 25 ~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~ 70 (102)
T 2xzz_A 25 QIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQS 70 (102)
T ss_dssp EEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEE
T ss_pred EEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEE
Confidence 4678899999999999888777754432221 234999998766543
No 82
>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}
Probab=31.29 E-value=58 Score=19.41 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=19.3
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.+...+++.+.+.+++.-
T Consensus 4 l~qp~~~~v~~G~~vtL~C~~s~ 26 (139)
T 2d7t_H 4 LVQSGAEVKKPGASVKVSCKASG 26 (139)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EECCCCEEEcCCCCEEEEEEEeC
Confidence 45688889999999999999863
No 83
>3tqz_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; purines, pyrimidines, nucleosides, nucleotides; 1.75A {Coxiella burnetii}
Probab=30.89 E-value=90 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=20.5
Q ss_pred CCceEeCCCCeEEEEEEEEEecee
Q psy1396 35 PQPVVLAPHDFCNIKANVKVASTE 58 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVsSte 58 (66)
+..++|.|+++..+.+-+++.=-+
T Consensus 41 ~~~~~i~Pg~~~lV~Tgi~i~iP~ 64 (155)
T 3tqz_A 41 DEPLKIEPDETCLISTGLAIYLGH 64 (155)
T ss_dssp SSCEEECTTCEEEEEEEEEEECCC
T ss_pred CCCEEECCCCEEEEECCcEEEcCC
Confidence 367999999999999999997653
No 84
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=30.72 E-value=1.1e+02 Score=19.53 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=36.6
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecCCCceE-eCCCCeEEEEEEEEEe
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVERPQPVV-LAPHDFCNIKANVKVA 55 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklverpq~~t-L~P~~~~~i~a~iKVs 55 (66)
+...|.+...+.|+.++.|.-=.+|+-=.|+.=+ |.|++...|.=.++|.
T Consensus 59 ~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~ 109 (146)
T 1iu1_A 59 IQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVL 109 (146)
T ss_dssp EEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEE
T ss_pred EEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEe
Confidence 4567998999999999999888888877776444 8886654444445443
No 85
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=30.70 E-value=49 Score=18.57 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.5
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
+..|+.+...+++.+.+.++++-
T Consensus 4 v~q~~~~~~~~G~~vtL~C~~~~ 26 (116)
T 1a2y_B 4 LQESGPGLVAPSQSLSITCTVSG 26 (116)
T ss_dssp EEEECCSEECTTSCEEEEEEEES
T ss_pred EEcCCCEEEeCCCcEEEEEEEcC
Confidence 44577788999999999998864
No 86
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=30.52 E-value=27 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=14.1
Q ss_pred EEEEEeceeceEEEEeC
Q psy1396 50 ANVKVASTENGIIFGNI 66 (66)
Q Consensus 50 a~iKVsStetGvIfG~I 66 (66)
..|+..+-|.|-+||.|
T Consensus 78 v~i~~k~g~~gklfGSV 94 (149)
T 3r8s_H 78 VTIASKAGDEGKLFGSI 94 (149)
T ss_dssp EEEEECBCTTSEEEEEE
T ss_pred EEEEEEcCCCCceEccc
Confidence 46777888999999986
No 87
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=30.25 E-value=45 Score=18.83 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.8
Q ss_pred EecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iKVs 55 (66)
|...|+.++..+++.+.+.+.++-+
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~ 27 (113)
T 1sq2_N 3 VDQTPRSVTKETGESLTINCVLRDA 27 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSC
T ss_pred eEeCCccEEEecCCCEEEEEEECCC
Confidence 4456778888888888888887543
No 88
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=29.92 E-value=82 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.4
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
..|...|+.++..+++.+.+.++++-.
T Consensus 4 v~l~qqp~~v~v~~G~sVtL~C~~s~~ 30 (149)
T 3u6r_H 4 VQLLEQSGAEVKKPGSSVKVSCQVFGD 30 (149)
T ss_dssp CEEEEECCCEEECTTCCEEEEEEEEES
T ss_pred cEEEecCCCEEEcCCCCEEEEeEeeCC
Confidence 445546888999999999999997753
No 89
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}
Probab=29.87 E-value=39 Score=23.62 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=18.6
Q ss_pred CCceEeCCCCeEEEEEEEEEec
Q psy1396 35 PQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVsS 56 (66)
+..+.|+|++..+.+.+|.|.+
T Consensus 319 ~g~~~L~PGe~~~~~~~i~v~~ 340 (341)
T 3os7_A 319 SGFKTLKPNESWSGVCKLYIEN 340 (341)
T ss_dssp HCCEEECTTCEEEEEEEEEEEE
T ss_pred cCceEECCCCEEEEEEEEEEEe
Confidence 3567899999999999998864
No 90
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=29.69 E-value=73 Score=17.55 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=15.8
Q ss_pred EEecCCCceEeCCCCeEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iK 53 (66)
++...|+.+++..++...+.+.+.
T Consensus 7 ~i~~~p~~~~v~~G~~~~l~C~~~ 30 (100)
T 3knb_A 7 KIEALPSDISIDEGKVLTVACAFT 30 (100)
T ss_dssp EECCCCSEEEEETTSEEEEEEEEE
T ss_pred EEEeCCCcEEEeCCCeEEEEEEEE
Confidence 345566677777777777776653
No 91
>2ggv_A NS2B, non-structural protein 2B; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus}
Probab=29.59 E-value=18 Score=20.65 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=17.8
Q ss_pred cceEEEEEecCCeEEecCCCc
Q psy1396 17 QNCTLELATLGDLKLVERPQP 37 (66)
Q Consensus 17 QNl~vElat~GdLklverpq~ 37 (66)
.++.|.+-..|++++++.|.+
T Consensus 26 ~rldV~~d~~G~f~L~~ee~~ 46 (56)
T 2ggv_A 26 ERVDVRLDDDGNFQLMNDPGA 46 (56)
T ss_dssp ECCCEEECTTSCEEETTCTTC
T ss_pred ceEEEEECCCCCEEEcccCCC
Confidence 467788999999999998875
No 92
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=29.55 E-value=87 Score=21.75 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEEEecCcccccceEEEEEecC---Ce--EE-----------ecCCC--ceEeCCCCeEEEEEE
Q psy1396 6 YKVLSVTGDTLQNCTLELATLG---DL--KL-----------VERPQ--PVVLAPHDFCNIKAN 51 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~G---dL--kl-----------verpq--~~tL~P~~~~~i~a~ 51 (66)
+.++|...+.=+.+++.|..+| +- ++ +.... .++|+||+.+-+|.+
T Consensus 321 va~~N~~~~~~~~~~~~l~~lGl~~~~~y~vrDlw~~~~~g~~~~~~~~~~~v~phg~~l~~lt 384 (400)
T 4do4_A 321 LVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLY 384 (400)
T ss_dssp EEEEECCSSSCEEEEEEGGGGTCCTTCEEEEEETTTCCEEEEECTTCEEEEEECTTCEEEEEEE
T ss_pred EEEEECCCCCcEEEEEEHHHcCCCCCCeEEEEECcCCceeccccCCceEEEEECCCeEEEEEEE
Confidence 4578976666788888887665 11 22 22222 356999998877753
No 93
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.03 E-value=30 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=23.5
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
.++.+|...|+.++..+++.+.+.+.+.-
T Consensus 6 ~~~~~v~q~p~~~~v~~G~~v~L~C~~~~ 34 (136)
T 2d9c_A 6 SGELQVIQPEKSVSVAAGESATLRCAMTS 34 (136)
T ss_dssp CSCCCEECCCSEEEEETTSCEEECCEESC
T ss_pred cCCeEEEecCcEEEEcCCCCEEEEEEEcC
Confidence 45777777788899999999999988753
No 94
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=28.52 E-value=41 Score=28.61 Aligned_cols=48 Identities=6% Similarity=-0.059 Sum_probs=38.0
Q ss_pred EEEEecCcccccceEEEEEecCCeEEecC------------CCceEeCCCCeEEEEEEEEE
Q psy1396 6 YKVLSVTGDTLQNCTLELATLGDLKLVER------------PQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 6 ~llvNqT~~tLQNl~vElat~GdLklver------------pq~~tL~P~~~~~i~a~iKV 54 (66)
..|.|.+.+. ++++++|...+++.+... .+.++|+|++...+.-.|+.
T Consensus 843 ~~V~N~~~~~-~~v~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p 902 (1676)
T 3cu7_A 843 GTVYNYRTSG-MQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSSSHLVTFTVLP 902 (1676)
T ss_dssp EEEEECSSSC-BCCCCEECCCTTEECSSCC----------CCCCCCBCTTEEEECCEEEEE
T ss_pred EEEEcCCCCc-EEEEEEEecCCCeEEeccccccccccccceeEEEEECCCCeEEEEEEEEE
Confidence 4688998877 469999988888887653 36889999999888777764
No 95
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=28.24 E-value=79 Score=18.30 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=18.1
Q ss_pred cCCCceEeCCCCeEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iK 53 (66)
..|+.++..+++.+.+.+++.
T Consensus 5 ~qp~~~~~~~G~~vtL~C~~s 25 (124)
T 1yc7_A 5 VESGGGSVQAGGSLRLSCAVS 25 (124)
T ss_dssp EEECCEEECTTCCEEEEEEEE
T ss_pred ECCCCEEEecCCCEEEEEEEe
Confidence 457889999999999999886
No 96
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=27.96 E-value=81 Score=17.80 Aligned_cols=21 Identities=0% Similarity=-0.102 Sum_probs=17.7
Q ss_pred cCCCceEeCCCCeEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iK 53 (66)
..|+.++..+++.+.+.+.++
T Consensus 5 ~q~~~~~~~~G~~vtL~C~~~ 25 (121)
T 1kxv_C 5 VESGGGTVPAGGSLRLSCAAS 25 (121)
T ss_dssp EEECCEEECTTCCEEEEEEEE
T ss_pred EcCCCEEEcCCCcEEEEEEec
Confidence 447788999999999999886
No 97
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A
Probab=27.73 E-value=1.3e+02 Score=19.48 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=24.1
Q ss_pred EecCCCceEeCCCCeEEEEEEEEEe--ceeceEEEE
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVKVA--STENGIIFG 64 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iKVs--StetGvIfG 64 (66)
.++....+.|.|+++.-+.+..++. .--.|.+++
T Consensus 66 ~i~~~~~~~L~Pg~~~lv~T~e~i~iP~~~~~~i~~ 101 (169)
T 2yzj_A 66 EIEFKERAILSANHTYLFESCEEFNMPADLAVLITL 101 (169)
T ss_dssp EEECSSEEEECTTEEEEEEEEEEEECCTTEEEEEEE
T ss_pred EecCCCcEEECCCcEEEEEEeeEEEcCCCcEEEEEE
Confidence 3444567899999999999998774 333455543
No 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=27.69 E-value=56 Score=17.97 Aligned_cols=26 Identities=4% Similarity=0.286 Sum_probs=20.2
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iK 53 (66)
-.+++..|+.+++..++...+.+.+.
T Consensus 14 ~~~i~~~p~~~~v~~G~~v~L~C~~~ 39 (106)
T 1nct_A 14 AARILTKPRSMTVYEGESARFSCDTD 39 (106)
T ss_dssp CCEEEECCCCEEESSSSCEECCEEEE
T ss_pred CCEEEECCCCEEEeCCCcEEEEEEEE
Confidence 35677888888888888888887664
No 99
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=27.58 E-value=45 Score=20.72 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=20.4
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANV 52 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~i 52 (66)
+++++..|+.++...++.+.+.+.+
T Consensus 1 ~i~~~~~p~~~~v~~G~~v~L~C~~ 25 (253)
T 3uzq_A 1 EVKLLEQSGAELVKPGASVRLSCTA 25 (253)
T ss_dssp --CCEEECCCEEECTTCCEEEEEEE
T ss_pred CceeEecCCCeeecCCCcEEEEEEe
Confidence 4677888999999999999999985
No 100
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=27.45 E-value=45 Score=21.21 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=34.5
Q ss_pred cCcccccceEEEEEecC-CeEEecCCCceEeCCCCeEEEEEEEEEec
Q psy1396 11 VTGDTLQNCTLELATLG-DLKLVERPQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 11 qT~~tLQNl~vElat~G-dLklverpq~~tL~P~~~~~i~a~iKVsS 56 (66)
-..-.+..+..+|.-.| .+---+.|+..++.+++...+...++|+.
T Consensus 52 ~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~v~~ 98 (151)
T 1xo8_A 52 SHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPY 98 (151)
T ss_dssp SSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCCEEH
T ss_pred CCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEEEEH
Confidence 34556778888886555 23334678889999999999999998874
No 101
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=27.26 E-value=84 Score=18.64 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=19.9
Q ss_pred EEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+|...|+.++..+++...+.+.+.-+
T Consensus 2 ~V~Q~p~~v~v~~G~svtL~C~~s~~ 27 (126)
T 3moq_A 2 WVDQTPRTATKETGESLTINCVLRDA 27 (126)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESC
T ss_pred ceEECCceEEEeCCCCEEEEEEeecC
Confidence 34556778888999999998887654
No 102
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=27.24 E-value=1.1e+02 Score=18.66 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=37.1
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.+-|.|.|. +.|..-+-|-..-+.+-||..=.|.|+++..|..+.+
T Consensus 30 ~l~l~N~s~---~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q 75 (126)
T 1msp_A 30 HIKITNAGG---RRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCD 75 (126)
T ss_dssp EEEEEECSS---SCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred EEEEECCCC---CeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEec
Confidence 356777766 5788888888888899999999999999988876653
No 103
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=27.05 E-value=38 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCce--EeCCCCeEEEEEEEEE
Q psy1396 34 RPQPV--VLAPHDFCNIKANVKV 54 (66)
Q Consensus 34 rpq~~--tL~P~~~~~i~a~iKV 54 (66)
+||.+ .|.|++.+++..+|+-
T Consensus 77 ~PQ~v~l~LRpGd~vsF~V~vry 99 (280)
T 2p26_A 77 SPQKVTLYLRPGQAAAFNVTFRR 99 (280)
T ss_dssp ECSEEEEEECTTCCEEEEEEECC
T ss_pred ccceEEEEecCCCeEEEEEEEEe
Confidence 57754 4899999999888873
No 104
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K
Probab=26.87 E-value=40 Score=20.15 Aligned_cols=23 Identities=0% Similarity=-0.088 Sum_probs=18.5
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.+++.-
T Consensus 4 v~qp~~~~v~~G~~vtL~C~~s~ 26 (137)
T 1rjc_A 4 LQASGGGSVQAGQSLRLSCATSG 26 (137)
T ss_dssp TCCBCCEEECTTCCEEEEEECC-
T ss_pred EEecCCEEEecCCCEEEEEEecC
Confidence 45588899999999999998753
No 105
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=26.86 E-value=80 Score=19.13 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=19.5
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iK 53 (66)
+.+|...|+.. ..+++.+.+.++++
T Consensus 3 ~~~v~Q~p~~~-v~~G~sVtL~C~~s 27 (137)
T 3lh2_H 3 QVQLVQSGAEV-KRPGSSVTVSCKAS 27 (137)
T ss_dssp -CEEEECCCEE-ECSSCCEEEEEEEE
T ss_pred ceeEEECCCEE-EcCCCCEEEEEEec
Confidence 56666766666 99999999999986
No 106
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=26.41 E-value=74 Score=18.87 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.4
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
+++.. |+.++...|+...+.+.+.
T Consensus 2 ~~v~q-p~~~~v~~G~~v~L~C~~~ 25 (210)
T 1lk3_L 2 TVLTQ-PPALTVSPGEKLTISCKAS 25 (210)
T ss_dssp CCEEC-CSEEEECTTSCEEEEEEES
T ss_pred ccEEC-CCcEEEcCCCCEEEEeeCC
Confidence 45666 8999999999999998853
No 107
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=26.32 E-value=47 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
.+.++...|+.++..+++.+.+.+.+.-
T Consensus 6 ~~~~v~q~p~~~~~~~G~~v~L~C~~~~ 33 (120)
T 2yz1_A 6 KELKVTQPEKSVSVAAGDSTVLNCTLTS 33 (120)
T ss_dssp -CCCEECCSSEEEECTTCCEEECCEESC
T ss_pred ccEEEECCCceEEEeCCCCEEEEeEECC
Confidence 3667777788888999999988888653
No 108
>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*
Probab=26.25 E-value=67 Score=18.32 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=17.7
Q ss_pred cCCCceEeCCCCeEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iK 53 (66)
+.|+.++..+++.+.+.+++.
T Consensus 5 ~q~~~~~~~~G~~vtL~C~~~ 25 (124)
T 1dlf_H 5 EESGGGLVQPGGSMKLSCATS 25 (124)
T ss_dssp EEECCCEECTTCCEEEEEEEE
T ss_pred EccCCEEEcCCCCEEEEeECC
Confidence 446788999999999999886
No 109
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=26.12 E-value=72 Score=18.02 Aligned_cols=26 Identities=4% Similarity=0.050 Sum_probs=19.8
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|. .|+.++..+++.+.+.+.+.-
T Consensus 3 ~~~v~-q~~~~~~~~G~~vtL~C~~~~ 28 (123)
T 2p45_B 3 QVQMV-ESGGGLVQAGGSLRLSCAASG 28 (123)
T ss_dssp CCEEE-EECCEEEETTCCEEEEEEEES
T ss_pred ceEEE-ccCCEEEeCCCCEEEEEEecC
Confidence 34444 466789999999999998863
No 110
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=26.07 E-value=61 Score=18.91 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=18.1
Q ss_pred EecCCCceEeCCCCeEEEEEEEEE
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iKV 54 (66)
|...|..++..+++.+.+.+.+.-
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~ 26 (121)
T 2i24_N 3 VDQTPQRITKETGESLTINCVVRD 26 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEECS
T ss_pred cEECCcEEEEecCCcEEEEeEccC
Confidence 445577888888888888888753
No 111
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=25.93 E-value=66 Score=17.85 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=19.6
Q ss_pred EEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iKV 54 (66)
++...|+.++..+++.+.+.+.+.-
T Consensus 2 ~v~q~p~~~~~~~G~~vtL~C~~~~ 26 (116)
T 1tvd_A 2 KVTQSSPDQTVASGSEVVLLCTYDT 26 (116)
T ss_dssp EEECCSCCEEEETTCCEEECCEEEC
T ss_pred ceecCCCcEEEecCCeEEEEeEeEc
Confidence 3556688888889999999888763
No 112
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=25.59 E-value=1.3e+02 Score=18.94 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=24.5
Q ss_pred EEEecCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 22 ELATLGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 22 Elat~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
.|......++...|+.+++.+++...+.+.+.-
T Consensus 115 ~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 147 (256)
T 1nqb_A 115 TVTVSSDIELTQTPLSLPVSLGDQASISCRSSQ 147 (256)
T ss_dssp EEEECCCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred eeeecccccEEecCcEEEEecCCcEEEEeEecC
Confidence 333445566777788889999999999998643
No 113
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=25.07 E-value=62 Score=17.66 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=18.8
Q ss_pred EEecCCCceEeCCCCeEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iK 53 (66)
..+.+|+.++...|+.+.+.+.+.
T Consensus 6 ~f~~~p~~~~v~~G~~v~L~C~~~ 29 (108)
T 3cx2_A 6 LFVMRPQDGEVTVGGSITFSARVA 29 (108)
T ss_dssp SCSBCCCCEEEETTCCEEEEEEEE
T ss_pred EEEeCCCcEEEeCCCCEEEEEEEC
Confidence 356778888888888888888775
No 114
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=25.05 E-value=77 Score=19.37 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=23.3
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
..+.+|...|+.++..+++.+.+.++++-
T Consensus 14 ~~~~~v~q~p~~v~v~~G~sVtL~C~~s~ 42 (146)
T 2yc1_B 14 GSEIVLTQSPATLSVSPGERATLSCRASQ 42 (146)
T ss_dssp -CCCCEEEECSEEEECTTSCEEEEEEESS
T ss_pred cccceEEEeCCEEEEecCCCEEEEEEECC
Confidence 34667778888999999999999998753
No 115
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=25.01 E-value=74 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
+++...|+.++...|+...+.+.+.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~ 26 (213)
T 3d9a_L 2 IVLTQSPATLSVTPGNSVSLSCRAS 26 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEES
T ss_pred ceEEeCCccEEEeCCCcEEEEEECC
Confidence 4567778889999999998888753
No 116
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=24.98 E-value=41 Score=19.27 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=21.4
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
+++|...|+.++..+++.+.+.+.+.-
T Consensus 3 ~~~v~q~p~~~~v~~G~~vtL~C~~~~ 29 (127)
T 2jju_A 3 ELQVIQPEKSVSVAAGESATLRCAMTS 29 (127)
T ss_dssp CCCEECCCSEEEEETTSCEEECCEESC
T ss_pred ceEEEeeCCeEEEeCCCCEEEEEEEeC
Confidence 456777778899999999999888753
No 117
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=24.94 E-value=55 Score=18.94 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=24.0
Q ss_pred cCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 26 LGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 26 ~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
+|.+.+...|+.+++..++...+.+.+.
T Consensus 2 ~~~~~i~~~~~~~~v~~G~~v~L~C~~~ 29 (209)
T 1nbq_A 2 MGSVTVHSSEPEVRIPENNPVKLSCAYS 29 (209)
T ss_dssp CCCCEEECSCSBCCEETTCCCEEECEEE
T ss_pred cceEEEEcCCCceEEEcCCCEEEEEEEe
Confidence 5778888899999999999999988865
No 118
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=24.90 E-value=84 Score=19.20 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
+++++...|+.++...++.+.+.+.+.
T Consensus 3 ~~~~v~~~p~~~~v~~G~~v~L~C~~~ 29 (250)
T 3esu_F 3 KDIVLIQSTSSLSASLGDRVTISCRAS 29 (250)
T ss_dssp -CCCEECSCSEEEECTTCCEEEEEEES
T ss_pred cceeEEecCCEEEeeCCCcEEEEEEec
Confidence 567888899999999999999998764
No 119
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=24.84 E-value=27 Score=20.59 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=19.4
Q ss_pred ecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKVs 55 (66)
+..|+.++..+++.+.+.+++.-+
T Consensus 4 v~Qp~~v~v~~G~~vtL~C~~s~~ 27 (123)
T 3t0v_A 4 LTQSPSVSGTPGQKVTIFCSGSSS 27 (123)
T ss_dssp BEECCCEEECTTCCEEEEEECCTT
T ss_pred cCccCeEEEcCCCCEEEEEecCCC
Confidence 556888999999999999987543
No 120
>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}
Probab=24.74 E-value=91 Score=17.83 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=19.1
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++...+.+.++-
T Consensus 4 l~q~~~~~v~~G~~vtL~C~~s~ 26 (122)
T 3nn8_A 4 LQQSGPEDVKPGASVKISCKASG 26 (122)
T ss_dssp EEECCCEEECTTCCEEEEEEEES
T ss_pred EEcCCCeEEeCCCcEEEEEEEEC
Confidence 45677889999999999999864
No 121
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=24.69 E-value=64 Score=18.02 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=19.4
Q ss_pred EEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iKV 54 (66)
+|.. |+.++..+++.+.+.+++.-
T Consensus 4 ~v~q-p~~~~~~~G~~v~L~C~~~~ 27 (115)
T 2otu_A 4 VLTQ-SSSASFSLGASAKLTCTLSS 27 (115)
T ss_dssp CEEE-CCCEECCTTCCEEEEEEECG
T ss_pred eEEc-CCCEEECCCCCEEEEEEecC
Confidence 3444 88999999999999998764
No 122
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=24.47 E-value=80 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.6
Q ss_pred CCceEeCCCCeEEEEEEEEEec
Q psy1396 35 PQPVVLAPHDFCNIKANVKVAS 56 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVsS 56 (66)
...+.|+|+++.....+|.|..
T Consensus 267 ~~~~~L~PGe~~~~~~~i~v~~ 288 (289)
T 3k25_A 267 EQLAWVEPYSSRSAWVNFQVST 288 (289)
T ss_dssp TTCEEECTTEEEEEEEEEEEEC
T ss_pred CCcEEECCCCeEEEEEEEEEEe
Confidence 3568899999999999998853
No 123
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*
Probab=24.20 E-value=94 Score=18.94 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.0
Q ss_pred CeEEecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 28 DLKLVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 28 dLklverpq~~tL~P~~~~~i~a~iKVs 55 (66)
+.+|...| ..+..+++.+.+.++++-+
T Consensus 3 ~v~v~Q~~-~~~v~~G~svtL~C~~s~~ 29 (146)
T 3qyc_A 3 QVQLVESG-GGLIKPGGSLRLSCAASGV 29 (146)
T ss_dssp -CEEEEEC-CEEECTTCCEEEEEEEESS
T ss_pred ceEEEeeC-CEEECCCCCEEEEEEeeCC
Confidence 45565555 5689999999999998643
No 124
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=24.16 E-value=30 Score=22.47 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=30.3
Q ss_pred ccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEEEeceeceEEEEeC
Q psy1396 16 LQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66 (66)
Q Consensus 16 LQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iKVsStetGvIfG~I 66 (66)
.++|.|.+++ ..+|+++.-..-.|.-|.-++|..- ++.+-+||+|
T Consensus 63 ~~~V~L~IS~-~gikv~d~~t~~il~~~~l~~ISf~-----aD~~~~FayI 107 (172)
T 1aqc_A 63 MTEVDLFILT-QRIKVLNADTQETMMDHPLRTISYI-----ADIGNIVVLM 107 (172)
T ss_dssp -CEEEEEECS-SEEEEEETTTCCEEEEEEGGGEEEE-----EEETTEEEEE
T ss_pred CcEEEEEEEC-CeEEEEeCCCCceEeccccceEEEE-----eeCCcEEEEE
Confidence 6788888875 5689998766555666665665554 2556678875
No 125
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=24.01 E-value=86 Score=16.30 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=14.4
Q ss_pred EecCCCceEeCCCCeEEEEEEEE
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iK 53 (66)
+...|+..+...++...+.+.+.
T Consensus 8 ~~~~~~~~~v~~G~~v~l~C~~~ 30 (99)
T 1g1c_A 8 IFERIQSQTVGQGSDAHFRVRVV 30 (99)
T ss_dssp EEECCCCEEEETTSCEEEEEEEE
T ss_pred eEecCcceEEcCCCcEEEEEEEE
Confidence 44556666666677666666554
No 126
>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1
Probab=23.91 E-value=56 Score=18.91 Aligned_cols=22 Identities=0% Similarity=-0.185 Sum_probs=17.7
Q ss_pred cCCCceEeCCCCeEEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iKV 54 (66)
+.|+.++..+++.+.+.+.+.-
T Consensus 5 ~qp~~~~~~~G~~vtL~C~~s~ 26 (127)
T 1kxt_B 5 VASGGGSVQAGGSLRLSCAASG 26 (127)
T ss_dssp EEECCEECCTTCCEEEEEEEC-
T ss_pred ECCCCEEEeCCCCEEEEeEecC
Confidence 4477889999999999998763
No 127
>3oc8_A Toxin coregulated pilus biosynthesis protein F; immunoglobulin-like fold, cell adhesion; 2.10A {Vibrio cholerae}
Probab=23.73 E-value=23 Score=23.40 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=13.1
Q ss_pred EEEEEEEeceeceEEEEe
Q psy1396 48 IKANVKVASTENGIIFGN 65 (66)
Q Consensus 48 i~a~iKVsStetGvIfG~ 65 (66)
.+.-+-|-|.|+||||.-
T Consensus 50 ~tvlvgvp~~etgviydp 67 (137)
T 3oc8_A 50 FKVLVGVPHAETGVIYDP 67 (137)
T ss_dssp EEEEEECCCTTTCCCSSC
T ss_pred EEEEEccCCCccceEech
Confidence 344456689999999853
No 128
>3v0a_C Llama antibody F12; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Lama glama}
Probab=23.72 E-value=99 Score=18.70 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=22.2
Q ss_pred ecCCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 25 TLGDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 25 t~GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
..++.+|...| .++..+++...+.+++.-
T Consensus 7 ~~~~~~v~Q~~-~~~v~~G~~vtL~C~~s~ 35 (152)
T 3v0a_C 7 PNSQVQLVESG-GGLVQPGGSLRLSCAASG 35 (152)
T ss_dssp --CCCEEEEEC-CCBCSSCSEEEEEEEEES
T ss_pred cccceEEEEcC-CEEEccCCCEEEEEEecC
Confidence 45777877765 577999999999999864
No 129
>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica}
Probab=23.44 E-value=99 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.2
Q ss_pred CCceEeCCCCeEEEEEEEEEece
Q psy1396 35 PQPVVLAPHDFCNIKANVKVAST 57 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVsSt 57 (66)
+..+.|.|+++..|.+-+++.=-
T Consensus 53 ~~~~~l~Pg~~~lV~Tgi~i~iP 75 (163)
T 3lqw_A 53 NTNFIIQPHERFLVSTGVSVQIP 75 (163)
T ss_dssp SSCEEECTTCEEEEEEEEEEECC
T ss_pred CCCEEECCCCEEEEEcCCEEECC
Confidence 35699999999999999998543
No 130
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=23.35 E-value=57 Score=18.93 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=19.7
Q ss_pred EecCCCceEeCCCCeEEEEEEEEEe
Q psy1396 31 LVERPQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a~iKVs 55 (66)
++..|+.++..+|+.+.+.+.+.-+
T Consensus 3 ~~~qp~~v~v~~G~~vtL~C~~s~~ 27 (126)
T 2h32_A 3 VLHQPPAMSSALGTTIRLTCTLRND 27 (126)
T ss_dssp SEECCSEEEEETTCCEEEEEEECTT
T ss_pred ceECCCCEEECCCCCEEEEEEecCC
Confidence 4566888889999999999987643
No 131
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=23.29 E-value=99 Score=17.92 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.0
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
++++..|+.+++..++...+.+.+.
T Consensus 3 ~~~~~~p~~~~v~~G~~v~l~C~~~ 27 (195)
T 2c5d_C 3 SPFVGNPGNITGARGLTGTLRCQLQ 27 (195)
T ss_dssp CSEEECCCCEEECTTCCEEEEEEEE
T ss_pred CeeccChhheEEecCCcEEEecccc
Confidence 4567789999999999999988876
No 132
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=23.21 E-value=83 Score=19.03 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=20.4
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++...|+.++...++...+.+.+.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~ 26 (240)
T 1moe_A 2 IVLTQSPASLAVSLGQRATMSCRAG 26 (240)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEES
T ss_pred CceEeeCCeEEecCCCCEEEEEeCC
Confidence 4667788889999999999988764
No 133
>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H
Probab=23.16 E-value=76 Score=18.20 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=18.3
Q ss_pred ecCCCceEeCCCCeEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iK 53 (66)
+..|+.++..+++.+.+.+++.
T Consensus 4 v~q~~~~~~~~G~~vtL~C~~s 25 (127)
T 1mqk_H 4 LQESGGDLVQPGGSLKLSCAAS 25 (127)
T ss_dssp EEEECCCEECTTCCEEEEEEEE
T ss_pred EECCCCEEEcCCCCEEEEEEeC
Confidence 3457788999999999999886
No 134
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=23.11 E-value=55 Score=18.90 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=16.8
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++..+++.+.+.+.++-
T Consensus 4 v~qp~~~~v~~G~~vtL~C~~s~ 26 (127)
T 2x1q_A 4 LQESGGGLVQPGGSLRLSCAASG 26 (127)
T ss_dssp CCEECCEEECTTCCEEEEEC---
T ss_pred EECCCCEEEcCCCCEEEEEEeCC
Confidence 34578889999999999998763
No 135
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=23.11 E-value=1.3e+02 Score=18.07 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEecCcccccceEEEEEecCCeEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 5 NYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 5 ~~llvNqT~~tLQNl~vElat~GdLklverpq~~tL~P~~~~~i~a~iK 53 (66)
.+-|.|.|. +.|..-+-|-..-+-.-||..=.|+|+++..|..+.+
T Consensus 32 ~l~L~N~s~---~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~ 77 (128)
T 1z9l_A 32 NLKLQNPSD---RKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ 77 (128)
T ss_dssp EEEEECCSS---SCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEEC
T ss_pred EEEEECCCC---CeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEEC
Confidence 356777765 6788888888888888999999999999988877654
No 136
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}
Probab=22.84 E-value=99 Score=21.05 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=25.5
Q ss_pred ceEEEEEe-cCCe-----EEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 18 NCTLELAT-LGDL-----KLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 18 Nl~vElat-~GdL-----klverpq~~tL~P~~~~~i~a~iKV 54 (66)
-|+||=.+ ..|- .+-+|+..+.|+|+++.+...+|.|
T Consensus 251 ~vciEP~tg~~Da~n~~~~~~~k~g~~~L~pGe~~~~~~~I~i 293 (294)
T 3q1n_A 251 FIAVEPFDGLPDQAGEPTDWYTKLGNTTLSAGANKQLALKVEL 293 (294)
T ss_dssp EEEEEEEESCCCBSSSCCBTTTCTTCEEECTTCEEEEEEEEEE
T ss_pred EEEEeCcCCCCCCCCCCCchhccCCCEEECCCCEEEEEEEEEE
Confidence 46777653 2221 2245667889999999999888876
No 137
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=22.82 E-value=62 Score=19.57 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=22.0
Q ss_pred EecCCeEEecCCCceEeCCCCeEEEEEEE
Q psy1396 24 ATLGDLKLVERPQPVVLAPHDFCNIKANV 52 (66)
Q Consensus 24 at~GdLklverpq~~tL~P~~~~~i~a~i 52 (66)
.--+.+++...|+.+++..++...+.+.+
T Consensus 14 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~ 42 (218)
T 3k0w_A 14 LVPRGSKITVNPESKAVLAGQFVKLCCRA 42 (218)
T ss_dssp -----CCEEECCCCEEEETTSBEEEECEE
T ss_pred ccCCCCEEEECCCCeEEeCCCcEEEEeee
Confidence 33457889999999999999999998875
No 138
>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus mutans}
Probab=22.71 E-value=62 Score=20.96 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.3
Q ss_pred CCceEeCCCCeEEEEEEEEEe
Q psy1396 35 PQPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 35 pq~~tL~P~~~~~i~a~iKVs 55 (66)
|..++|.|+++..|.+-+++.
T Consensus 35 ~~~~~i~Pg~~~lv~Tgi~i~ 55 (148)
T 3h6x_A 35 AERTEISAGAIVLVPTGVKAY 55 (148)
T ss_dssp SSCEEECTTCEEEEECCEEEE
T ss_pred CCCeEECCCCEEEEECCeEEE
Confidence 357999999999999999884
No 139
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=22.68 E-value=95 Score=18.34 Aligned_cols=24 Identities=4% Similarity=0.171 Sum_probs=19.1
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++.. |+.++...++.+.+.+.+.
T Consensus 2 ~~v~~-p~~~~v~~G~~v~L~C~~~ 25 (212)
T 1q0x_L 2 AVVTQ-ESALTTSPGETVTLTCRSS 25 (212)
T ss_dssp CCEEE-CSEEEECTTCCEEEEEEES
T ss_pred ceEEC-CCeEeecCCCCEEEEEEec
Confidence 45666 8888999999998888764
No 140
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=22.57 E-value=89 Score=17.05 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=14.3
Q ss_pred eEEecCCCceEeCCCCeEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANV 52 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~i 52 (66)
.+++..|+.+++..++.+.+.+.+
T Consensus 6 ~~~~~~~~~~~v~~G~~v~l~C~v 29 (93)
T 1waa_A 6 IEVEKPLYGVEVFVGETAHFEIEL 29 (93)
T ss_dssp CCEEECCCCEEEETTSCEEEEEEE
T ss_pred cEeeccCcceEEeCCCCEEEEEEE
Confidence 345555666666666666666554
No 141
>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A
Probab=22.54 E-value=86 Score=18.90 Aligned_cols=22 Identities=0% Similarity=-0.130 Sum_probs=18.1
Q ss_pred cCCCceEeCCCCeEEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iKV 54 (66)
+.|+.++..+++.+.+.+++.-
T Consensus 5 ~qp~~~~v~~G~svtL~C~~s~ 26 (148)
T 1jtp_A 5 QASGGGSVQAGGSLRLSCAASG 26 (148)
T ss_dssp EEECCEEEETTCCEEEEEEEES
T ss_pred EecCCEEEecCCCEEEEEEEeC
Confidence 4477889999999999998763
No 142
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=22.38 E-value=1e+02 Score=17.34 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=18.4
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
...|+.++..+|+.+.+.+++.-
T Consensus 3 ~q~p~~~~v~~G~~vtL~C~~~~ 25 (117)
T 3bp6_A 3 TFYPAWLTVSEGANATFTCSLSN 25 (117)
T ss_dssp EEECSEEEECTTCCEEEEEEESS
T ss_pred eecCCcEEEeCCCCEEEEeEeec
Confidence 34577888999999999998763
No 143
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=22.29 E-value=90 Score=17.90 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=19.1
Q ss_pred eEEecCCCceEeCCCCeEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANV 52 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~i 52 (66)
.+|.-.|+.++..+++.+.+.++.
T Consensus 2 ~~v~q~p~~v~v~~G~~vtL~C~~ 25 (121)
T 2oi9_C 2 AAVTQSPRNKVAVTGEKVTLSCNQ 25 (121)
T ss_dssp CSEEEECSEEEEETTCCEEEEEEE
T ss_pred CceEeCCCeEEecCCCcEEEEEEe
Confidence 345556888999999999999984
No 144
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=22.15 E-value=97 Score=16.98 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred EEecCCCceEeCCCCeEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKAN 51 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~ 51 (66)
++.. |+.++..+++.+.+.+.
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~ 23 (109)
T 1pew_A 3 MLNQ-PHSVSESPGKTVTISCT 23 (109)
T ss_dssp CEEC-CSEEEECTTSCEEEEEE
T ss_pred eEEC-CCCEEEcCCCCEEEEEE
Confidence 3444 88999999999999998
No 145
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=22.07 E-value=1.1e+02 Score=16.93 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.3
Q ss_pred cCCCceEeCCCCeEEEEEEEE
Q psy1396 33 ERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 33 erpq~~tL~P~~~~~i~a~iK 53 (66)
..|+.+...+++.+.+.++..
T Consensus 4 q~p~~~~~~~G~~v~L~C~~~ 24 (117)
T 1dqt_A 4 TQPSVVLASSHGVASFPCEYS 24 (117)
T ss_dssp ECCSEEECCTTSCEEEEEEEE
T ss_pred eCCceEEEeCCCeEEEEEEee
Confidence 468889999999999999876
No 146
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=21.82 E-value=1.3e+02 Score=20.04 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=15.1
Q ss_pred EecCCCceEeCCCCeEEEEE
Q psy1396 31 LVERPQPVVLAPHDFCNIKA 50 (66)
Q Consensus 31 lverpq~~tL~P~~~~~i~a 50 (66)
++..=..++|.|+..+.++|
T Consensus 122 ~L~pGesvtIppg~~H~f~a 141 (175)
T 2y0o_A 122 ELEPGGQYTIPPNTKHWFQA 141 (175)
T ss_dssp EECTTCEEEECTTCCEEEEE
T ss_pred EECCCCEEEECCCCcEEEEe
Confidence 34444488899999999988
No 147
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=21.74 E-value=1.2e+02 Score=16.99 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=17.1
Q ss_pred EEecCCCceEeCCCCeEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iK 53 (66)
+++..|+.++...++...+.+.+.
T Consensus 15 ~f~~~p~~~~v~~G~~~~l~C~~~ 38 (107)
T 3knb_B 15 CFLRFPRPVRVVSGAEAELKCVVL 38 (107)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEE
T ss_pred EEEeCCCcEEEeCCCcEEEEEEEE
Confidence 356677777777788777777653
No 148
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=21.56 E-value=1.1e+02 Score=18.15 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=20.6
Q ss_pred CCeEEecCCCceEeCCCCeEEEEEEEEE
Q psy1396 27 GDLKLVERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 27 GdLklverpq~~tL~P~~~~~i~a~iKV 54 (66)
++.+|. .|+.++..+++.+.+.+++.-
T Consensus 5 ~~~~v~-q~~~v~v~~G~~vtL~C~~~~ 31 (135)
T 1p4b_L 5 ADAVVT-QESALTTSPGETVTLTCRSST 31 (135)
T ss_dssp CCCCEE-CCSEEEECTTCEEEEEEEETT
T ss_pred CceeEE-ECCcEEEcCCCCEEEEEEecC
Confidence 444544 467799999999999998753
No 149
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=20.86 E-value=82 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=18.9
Q ss_pred EEecCCCceEeCCCCeEEEEEEEE
Q psy1396 30 KLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 30 klverpq~~tL~P~~~~~i~a~iK 53 (66)
++...|+.++..+++.+.+.+.++
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~ 26 (113)
T 1h5b_A 3 QVEQSPSALSLHEGTDSALRCNFT 26 (113)
T ss_dssp SEEEECSEEEEETTCCEEEEEEES
T ss_pred ceEECCCEEEEecCCcEEEEEEEC
Confidence 455667888888888888888875
No 150
>2xx6_A SPBC2 prophage-derived deoxyuridine 5'-triphospha nucleotidohydrolase YOSS; 1.74A {Bacillus subtilis} PDB: 2baz_A 2xy3_A* 2y1t_A* 2xcd_A 2xce_A*
Probab=20.73 E-value=73 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.5
Q ss_pred CceEeCCCCeEEEEEEEEEe
Q psy1396 36 QPVVLAPHDFCNIKANVKVA 55 (66)
Q Consensus 36 q~~tL~P~~~~~i~a~iKVs 55 (66)
..++|.|+++..+.+-+++.
T Consensus 30 ~~~~i~Pg~~~lv~Tg~~i~ 49 (142)
T 2xx6_A 30 EDVAIKKDEFKLVPLGVAME 49 (142)
T ss_dssp SCEEECTTCEEEEECCEEEE
T ss_pred CCeEECCCCEEEEEcCEEEE
Confidence 45899999999999998884
No 151
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=20.65 E-value=98 Score=18.92 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.6
Q ss_pred eEEecCCCceEeCCCCeEEEEEEEE
Q psy1396 29 LKLVERPQPVVLAPHDFCNIKANVK 53 (66)
Q Consensus 29 Lklverpq~~tL~P~~~~~i~a~iK 53 (66)
.++...|+.++...++.+.+.+.+.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~ 26 (247)
T 1svz_A 2 ILMTQTPLYLPVSLGDQASISCRSS 26 (247)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEES
T ss_pred CcEEecCCeEEecCCCCEEEEEeCC
Confidence 4677778889999999999988864
No 152
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=20.04 E-value=64 Score=18.29 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=19.4
Q ss_pred ecCCCceEeCCCCeEEEEEEEEE
Q psy1396 32 VERPQPVVLAPHDFCNIKANVKV 54 (66)
Q Consensus 32 verpq~~tL~P~~~~~i~a~iKV 54 (66)
++.|+.++...|+.+.+.+.+.-
T Consensus 4 v~~p~~vtv~~G~~v~L~C~~~~ 26 (123)
T 4gjt_B 4 LETSDVVTVVLGQDAKLPCFYRG 26 (123)
T ss_dssp EECCSEEECCTTSEEEECCEECC
T ss_pred EEcCCEEEEEcCCCEEEEEEEeC
Confidence 46789999999999999998754
Done!