Your job contains 1 sequence.
>psy1396
MDQNNYKVLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENG
IIFGNI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1396
(66 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0008635 - symbol:betaCop "beta-coatomer protein" s... 274 1.2e-22 1
UNIPROTKB|Q5ZIA5 - symbol:COPB1 "Coatomer subunit beta" s... 259 4.8e-21 1
UNIPROTKB|A0JN39 - symbol:COPB1 "Coatomer subunit beta" s... 259 4.8e-21 1
UNIPROTKB|E2R9A2 - symbol:COPB1 "Coatomer subunit beta" s... 259 4.8e-21 1
UNIPROTKB|P53618 - symbol:COPB1 "Coatomer subunit beta" s... 259 4.8e-21 1
UNIPROTKB|D2SW95 - symbol:COPB1 "Coatomer subunit beta" s... 259 4.8e-21 1
MGI|MGI:1917599 - symbol:Copb1 "coatomer protein complex,... 259 4.8e-21 1
RGD|620861 - symbol:Copb1 "coatomer protein complex, subu... 259 4.8e-21 1
ZFIN|ZDB-GENE-030219-38 - symbol:copb1 "coatomer protein ... 259 4.8e-21 1
WB|WBGene00021292 - symbol:copb-1 species:6239 "Caenorhab... 213 4.1e-16 1
TAIR|locus:2125259 - symbol:AT4G31490 species:3702 "Arabi... 188 1.8e-13 1
POMBASE|SPBC146.14c - symbol:sec26 "coatomer beta subunit... 177 2.7e-12 1
ASPGD|ASPL0000052724 - symbol:AN1177 species:162425 "Emer... 174 5.8e-12 1
DICTYBASE|DDB_G0284735 - symbol:copB "coatomer protein co... 169 1.9e-11 1
CGD|CAL0000129 - symbol:SEC26 species:5476 "Candida albic... 147 4.4e-09 1
UNIPROTKB|Q5A6M6 - symbol:SEC26 "Coatomer subunit beta" s... 147 4.4e-09 1
SGD|S000002646 - symbol:SEC26 "Essential beta-coat protei... 141 2.0e-08 1
>FB|FBgn0008635 [details] [associations]
symbol:betaCop "beta-coatomer protein" species:7227
"Drosophila melanogaster" [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=ISS;NAS] [GO:0030126 "COPI vesicle coat"
evidence=ISS;NAS] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0010883 "regulation of lipid storage" evidence=IDA] [GO:0000902
"cell morphogenesis" evidence=IMP] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0005794
GO:GO:0006886 GO:GO:0006911 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198 EMBL:AE014298
GO:GO:0000902 eggNOG:COG5096 GO:GO:0030126 GO:GO:0010883
PANTHER:PTHR10635 GeneTree:ENSGT00390000005270 OMA:DFEWENK
EMBL:L31852 EMBL:AF145656 RefSeq:NP_523400.1 UniGene:Dm.2883
ProteinModelPortal:P45437 SMR:P45437 DIP:DIP-23112N IntAct:P45437
MINT:MINT-846029 STRING:P45437 PaxDb:P45437
EnsemblMetazoa:FBtr0074576 GeneID:32820 KEGG:dme:Dmel_CG6223
CTD:32820 FlyBase:FBgn0008635 InParanoid:P45437 OrthoDB:EOG4MGQP7
PhylomeDB:P45437 GenomeRNAi:32820 NextBio:780558 Bgee:P45437
GermOnline:CG6223 Uniprot:P45437
Length = 964
Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 52/59 (88%), Positives = 56/59 (94%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T DTLQNCTLELATLGDLKLVERP PVVLAPHDFCNIKANVKV+STENGIIFGNI
Sbjct: 758 IVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNI 816
>UNIPROTKB|Q5ZIA5 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9031 "Gallus
gallus" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198 eggNOG:COG5096
GO:GO:0030126 HOGENOM:HOG000207417 PANTHER:PTHR10635 CTD:1315
GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380 OMA:DFEWENK
OrthoDB:EOG4KPT94 EMBL:AJ720879 IPI:IPI00599398
RefSeq:NP_001006467.1 UniGene:Gga.3647 ProteinModelPortal:Q5ZIA5
STRING:Q5ZIA5 PRIDE:Q5ZIA5 Ensembl:ENSGALT00000009679 GeneID:423063
KEGG:gga:423063 InParanoid:Q5ZIA5 NextBio:20825590 Uniprot:Q5ZIA5
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>UNIPROTKB|A0JN39 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198
GO:GO:0005793 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 EMBL:BC126502 IPI:IPI00712785
RefSeq:NP_001071475.1 UniGene:Bt.22486 STRING:A0JN39 PRIDE:A0JN39
Ensembl:ENSBTAT00000008616 GeneID:535533 KEGG:bta:535533 CTD:1315
GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380 InParanoid:A0JN39
OMA:DFEWENK OrthoDB:EOG4KPT94 NextBio:20876774 Uniprot:A0JN39
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>UNIPROTKB|E2R9A2 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9615 "Canis
lupus familiaris" [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016192 GO:GO:0005198 GO:GO:0030126 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 OMA:DFEWENK EMBL:AAEX03012936
RefSeq:XP_534069.3 Ensembl:ENSCAFT00000013410 GeneID:476866
KEGG:cfa:476866 Uniprot:E2R9A2
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>UNIPROTKB|P53618 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9606 "Homo
sapiens" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030126 "COPI
vesicle coat" evidence=ISS] [GO:0006891 "intra-Golgi
vesicle-mediated transport" evidence=ISS] [GO:0000139 "Golgi
membrane" evidence=TAS] [GO:0005798 "Golgi-associated vesicle"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
[GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0005829 GO:GO:0005886 GO:GO:0019048
GO:GO:0006886 EMBL:CH471064 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198 GO:GO:0006891
GO:GO:0005793 eggNOG:COG5096 GO:GO:0030126 GO:GO:0048205
GO:GO:0006890 HOGENOM:HOG000207417 PANTHER:PTHR10635 CTD:1315
HOVERGEN:HBG005380 OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AF084457
EMBL:AF111807 EMBL:AL136593 EMBL:BC037280 EMBL:X82103
IPI:IPI00295851 PIR:A55136 PIR:T46913 RefSeq:NP_001137533.1
RefSeq:NP_001137534.1 RefSeq:NP_057535.1 UniGene:Hs.339278
ProteinModelPortal:P53618 SMR:P53618 DIP:DIP-265N IntAct:P53618
MINT:MINT-1151935 STRING:P53618 PhosphoSite:P53618 DMDM:116241311
PaxDb:P53618 PeptideAtlas:P53618 PRIDE:P53618 DNASU:1315
Ensembl:ENST00000249923 Ensembl:ENST00000439561 GeneID:1315
KEGG:hsa:1315 UCSC:uc001mlg.2 GeneCards:GC11M014436
H-InvDB:HIX0009466 HGNC:HGNC:2231 HPA:CAB012338 MIM:600959
neXtProt:NX_P53618 PharmGKB:PA26747 InParanoid:P53618 ChiTaRS:COPB1
GenomeRNAi:1315 NextBio:5379 ArrayExpress:P53618 Bgee:P53618
CleanEx:HS_COPB1 Genevestigator:P53618 GermOnline:ENSG00000129083
Uniprot:P53618
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>UNIPROTKB|D2SW95 [details] [associations]
symbol:COPB1 "Coatomer subunit beta" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005198 "structural molecule activity" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198
GO:GO:0005793 GO:GO:0030126 PANTHER:PTHR10635 CTD:1315
EMBL:FJ865397 RefSeq:NP_001165837.1 UniGene:Ssc.2442
GeneID:100337660 KEGG:ssc:100337660 Uniprot:D2SW95
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>MGI|MGI:1917599 [details] [associations]
symbol:Copb1 "coatomer protein complex, subunit beta 1"
species:10090 "Mus musculus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=ISO;IDA] [GO:0005798
"Golgi-associated vesicle" evidence=ISO] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISO]
[GO:0015031 "protein transport" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=ISO] [GO:0030137 "COPI-coated vesicle"
evidence=IDA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
MGI:MGI:1917599 GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198
EMBL:CH466531 GO:GO:0006891 GO:GO:0005793 eggNOG:COG5096
GO:GO:0030137 GO:GO:0030126 HOGENOM:HOG000207417 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380
OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AF231925 EMBL:AK149828
EMBL:AK152222 EMBL:AK161544 EMBL:AK172214 EMBL:BC030837
IPI:IPI00120503 RefSeq:NP_203534.1 UniGene:Mm.277024
ProteinModelPortal:Q9JIF7 SMR:Q9JIF7 DIP:DIP-42642N IntAct:Q9JIF7
MINT:MINT-1489518 STRING:Q9JIF7 PhosphoSite:Q9JIF7 PaxDb:Q9JIF7
PRIDE:Q9JIF7 Ensembl:ENSMUST00000033012 GeneID:70349 KEGG:mmu:70349
InParanoid:Q3T9Y4 NextBio:331414 Bgee:Q9JIF7 CleanEx:MM_COPB1
Genevestigator:Q9JIF7 GermOnline:ENSMUSG00000030754 Uniprot:Q9JIF7
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>RGD|620861 [details] [associations]
symbol:Copb1 "coatomer protein complex, subunit beta 1"
species:10116 "Rattus norvegicus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005793
"endoplasmic reticulum-Golgi intermediate compartment"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISO;IDA]
[GO:0005798 "Golgi-associated vesicle" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0006890 "retrograde vesicle-mediated
transport, Golgi to ER" evidence=TAS] [GO:0006891 "intra-Golgi
vesicle-mediated transport" evidence=IDA] [GO:0030126 "COPI vesicle
coat" evidence=IDA] [GO:0030137 "COPI-coated vesicle" evidence=ISO]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
RGD:620861 GO:GO:0005783 GO:GO:0005886 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0005198 GO:GO:0006891 GO:GO:0005793
eggNOG:COG5096 GO:GO:0030126 GO:GO:0006890 HOGENOM:HOG000207417
PANTHER:PTHR10635 CTD:1315 GeneTree:ENSGT00390000005270
HOVERGEN:HBG005380 OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:X57228
EMBL:BC061882 IPI:IPI00211812 PIR:S13520 RefSeq:NP_542959.1
UniGene:Rn.4327 ProteinModelPortal:P23514 IntAct:P23514
STRING:P23514 PRIDE:P23514 Ensembl:ENSRNOT00000016292 GeneID:114023
KEGG:rno:114023 UCSC:RGD:620861 InParanoid:P23514 NextBio:618175
Genevestigator:P23514 GermOnline:ENSRNOG00000012000 Uniprot:P23514
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>ZFIN|ZDB-GENE-030219-38 [details] [associations]
symbol:copb1 "coatomer protein complex, subunit beta
1" species:7955 "Danio rerio" [GO:0030117 "membrane coat"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0030126 "COPI
vesicle coat" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0030903
"notochord development" evidence=IMP] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 ZFIN:ZDB-GENE-030219-38
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016192 GO:GO:0005198 eggNOG:COG5096
GO:GO:0030126 GO:GO:0030903 HOGENOM:HOG000207417 PANTHER:PTHR10635
CTD:1315 GeneTree:ENSGT00390000005270 HOVERGEN:HBG005380
OMA:DFEWENK OrthoDB:EOG4KPT94 EMBL:AY294010 EMBL:BC081657
IPI:IPI00639577 RefSeq:NP_001002013.1 UniGene:Dr.77150
ProteinModelPortal:Q66HV4 STRING:Q66HV4 PRIDE:Q66HV4
Ensembl:ENSDART00000079042 GeneID:338138 KEGG:dre:338138
InParanoid:Q6JWU8 NextBio:20812553 Bgee:Q66HV4 Uniprot:Q66HV4
Length = 953
Score = 259 (96.2 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 50/59 (84%), Positives = 54/59 (91%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T DTLQNCTLELATLGDLKLVE+P P+ LAPHDF NIKANVKVASTENGIIFGNI
Sbjct: 745 VVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNI 803
>WB|WBGene00021292 [details] [associations]
symbol:copb-1 species:6239 "Caenorhabditis elegans"
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0030117
"membrane coat" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0030126 "COPI vesicle coat"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0032940 "secretion by cell"
evidence=IMP] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0008340 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0032940 GO:GO:0016192
GO:GO:0005198 GO:GO:0000003 eggNOG:COG5096 GO:GO:0030126
HOGENOM:HOG000207417 PANTHER:PTHR10635 GeneTree:ENSGT00390000005270
OMA:DFEWENK EMBL:FO080207 PIR:T33907 RefSeq:NP_494441.1
ProteinModelPortal:Q9TYL9 SMR:Q9TYL9 STRING:Q9TYL9 PaxDb:Q9TYL9
EnsemblMetazoa:Y25C1A.5 GeneID:173656 KEGG:cel:CELE_Y25C1A.5
UCSC:Y25C1A.5.1 CTD:173656 WormBase:Y25C1A.5 InParanoid:Q9TYL9
NextBio:880553 Uniprot:Q9TYL9
Length = 971
Score = 213 (80.0 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 41/59 (69%), Positives = 50/59 (84%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T DTLQN +LELAT+GDLKLV++P PV LAP+DF NIKA VKVASTENG+IF I
Sbjct: 754 IVNQTSDTLQNVSLELATVGDLKLVDKPTPVTLAPNDFSNIKATVKVASTENGVIFSTI 812
>TAIR|locus:2125259 [details] [associations]
symbol:AT4G31490 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006886 "intracellular
protein transport" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA] [GO:0030276 "clathrin
binding" evidence=ISS] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 GO:GO:0005829
GO:GO:0006886 EMBL:CP002687 GenomeReviews:CT486007_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0016020 GO:GO:0016192 GO:GO:0005198
eggNOG:COG5096 GO:GO:0030126 EMBL:AL080283 EMBL:AL161579
EMBL:AK228881 IPI:IPI00528352 PIR:T10679 RefSeq:NP_194877.2
UniGene:At.47266 ProteinModelPortal:Q9SV20 SMR:Q9SV20 IntAct:Q9SV20
STRING:Q9SV20 PaxDb:Q9SV20 PRIDE:Q9SV20 EnsemblPlants:AT4G31490.1
GeneID:829276 KEGG:ath:AT4G31490 TAIR:At4g31490
HOGENOM:HOG000207417 InParanoid:Q9SV20 OMA:NDIHVDI PhylomeDB:Q9SV20
ProtClustDB:CLSN2685858 Genevestigator:Q9SV20 PANTHER:PTHR10635
Uniprot:Q9SV20
Length = 948
Score = 188 (71.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 39/59 (66%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V++ T +TLQN LELAT+GDLKLVERPQ LAP IKAN+KV+STE G+IFGNI
Sbjct: 746 VINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNI 804
>POMBASE|SPBC146.14c [details] [associations]
symbol:sec26 "coatomer beta subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006886 "intracellular protein transport"
evidence=IC] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=ISS]
[GO:0030134 "ER to Golgi transport vesicle" evidence=IC]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
PomBase:SPBC146.14c GO:GO:0005829 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077 GO:GO:0005198
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006888
eggNOG:COG5096 GO:GO:0030126 GO:GO:0030134 HOGENOM:HOG000207417
PANTHER:PTHR10635 OMA:DFEWENK PIR:T39428 RefSeq:NP_595403.1
ProteinModelPortal:Q9UUF7 STRING:Q9UUF7 EnsemblFungi:SPBC146.14c.1
GeneID:2539798 KEGG:spo:SPBC146.14c OrthoDB:EOG483HCN
NextBio:20800947 Uniprot:Q9UUF7
Length = 940
Score = 177 (67.4 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 12 TGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
T TLQN +++LATLGDLK+VERP P+ L PH F +++A VKV+STE+ +IFGNI
Sbjct: 749 TDTTLQNLSVDLATLGDLKVVERPPPMNLGPHAFKSVQATVKVSSTESAVIFGNI 803
>ASPGD|ASPL0000052724 [details] [associations]
symbol:AN1177 species:162425 "Emericella nidulans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0016192 EMBL:AACD01000016 EMBL:BN001308
GO:GO:0005198 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 OMA:DFEWENK OrthoDB:EOG483HCN RefSeq:XP_658781.1
ProteinModelPortal:Q5BE53 STRING:Q5BE53
EnsemblFungi:CADANIAT00001449 GeneID:2876954 KEGG:ani:AN1177.2
Uniprot:Q5BE53
Length = 950
Score = 174 (66.3 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 34/59 (57%), Positives = 46/59 (77%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T +TLQN ++E ATLGDLK+VERP L P DF N++A VKV+ST+ G+IFGNI
Sbjct: 748 LVNQTLETLQNLSVEFATLGDLKVVERPTTHNLGPRDFLNVQATVKVSSTDTGVIFGNI 806
>DICTYBASE|DDB_G0284735 [details] [associations]
symbol:copB "coatomer protein complex beta subunit"
species:44689 "Dictyostelium discoideum" [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IEA;IDA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0030117 "membrane coat" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0000139 "Golgi membrane" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 dictyBase:DDB_G0284735
GO:GO:0005794 GO:GO:0048471 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 PROSITE:PS50077
GenomeReviews:CM000153_GR GO:GO:0016192 GO:GO:0005198
EMBL:AAFI02000071 eggNOG:COG5096 GO:GO:0030126 PANTHER:PTHR10635
OMA:DFEWENK EMBL:AF247143 EMBL:U62960 RefSeq:XP_638375.1
ProteinModelPortal:Q23924 STRING:Q23924 PRIDE:Q23924
EnsemblProtists:DDB0191250 GeneID:8624744 KEGG:ddi:DDB_G0284735
ProtClustDB:CLSZ2430217 Uniprot:Q23924
Length = 912
Score = 169 (64.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
V + T DTLQN TLEL TLGDLK+ ER P +AP + + KA++KV+ST+NG+I G I
Sbjct: 705 VFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPREKTSAKASIKVSSTDNGVIMGTI 763
>CGD|CAL0000129 [details] [associations]
symbol:SEC26 species:5476 "Candida albicans" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0030126 "COPI vesicle coat"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR002553 InterPro:IPR011710 InterPro:IPR016024
InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727
CGD:CAL0000129 GO:GO:0005886 GO:GO:0006886 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016192 GO:GO:0005198
eggNOG:COG5096 GO:GO:0030126 EMBL:AACQ01000055 EMBL:AACQ01000054
HOGENOM:HOG000207417 PANTHER:PTHR10635 RefSeq:XP_717391.1
RefSeq:XP_717483.1 ProteinModelPortal:Q5A6M6 STRING:Q5A6M6
GeneID:3640891 GeneID:3641005 KEGG:cal:CaO19.528
KEGG:cal:CaO19.8161 Uniprot:Q5A6M6
Length = 952
Score = 147 (56.8 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T TL+N ++E ATLGDLK+V++P + PH F ++ +KV S + G+IFGNI
Sbjct: 743 LVNQTTTTLRNLSVEFATLGDLKVVDKPTTANIGPHGFYKVQTTIKVTSADTGVIFGNI 801
>UNIPROTKB|Q5A6M6 [details] [associations]
symbol:SEC26 "Coatomer subunit beta" species:237561
"Candida albicans SC5314" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR002553 InterPro:IPR011710
InterPro:IPR016024 InterPro:IPR016460 Pfam:PF01602 Pfam:PF07718
PIRSF:PIRSF005727 CGD:CAL0000129 GO:GO:0005886 GO:GO:0006886
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016192
GO:GO:0005198 eggNOG:COG5096 GO:GO:0030126 EMBL:AACQ01000055
EMBL:AACQ01000054 HOGENOM:HOG000207417 PANTHER:PTHR10635
RefSeq:XP_717391.1 RefSeq:XP_717483.1 ProteinModelPortal:Q5A6M6
STRING:Q5A6M6 GeneID:3640891 GeneID:3641005 KEGG:cal:CaO19.528
KEGG:cal:CaO19.8161 Uniprot:Q5A6M6
Length = 952
Score = 147 (56.8 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T TL+N ++E ATLGDLK+V++P + PH F ++ +KV S + G+IFGNI
Sbjct: 743 LVNQTTTTLRNLSVEFATLGDLKVVDKPTTANIGPHGFYKVQTTIKVTSADTGVIFGNI 801
>SGD|S000002646 [details] [associations]
symbol:SEC26 "Essential beta-coat protein of the COPI
coatomer" species:4932 "Saccharomyces cerevisiae" [GO:0005198
"structural molecule activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0030117 "membrane coat" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=IEA;IGI;ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000139 "Golgi membrane"
evidence=IEA] [GO:0030663 "COPI-coated vesicle membrane"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0031410
"cytoplasmic vesicle" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0030135
"coated vesicle" evidence=ISS] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IMP] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR002553
InterPro:IPR011710 InterPro:IPR016024 InterPro:IPR016460
Pfam:PF01602 Pfam:PF07718 PIRSF:PIRSF005727 SGD:S000002646
GO:GO:0006886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0005198 EMBL:BK006938 GO:GO:0006888
EMBL:Z49701 eggNOG:COG5096 GO:GO:0030126 HOGENOM:HOG000207417
PANTHER:PTHR10635 GeneTree:ENSGT00390000005270 OrthoDB:EOG483HCN
EMBL:U11236 PIR:S54534 RefSeq:NP_010524.3 RefSeq:NP_010529.3
ProteinModelPortal:P41810 DIP:DIP-6467N IntAct:P41810
MINT:MINT-429001 STRING:P41810 PaxDb:P41810 PeptideAtlas:P41810
EnsemblFungi:YDR238C GeneID:851824 GeneID:851830 KEGG:sce:YDR238C
KEGG:sce:YDR243C CYGD:YDR238c KO:K12858 OMA:TEFRSMW NextBio:969701
Genevestigator:P41810 GermOnline:YDR238C Uniprot:P41810
Length = 973
Score = 141 (54.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 8 VLSVTGDTLQNCTLELATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTENGIIFGNI 66
+++ T +TL+N ++ ATLGDLK+++ PQ + PH F VKV+S + G+IFGNI
Sbjct: 762 LVNQTKETLKNLHVQFATLGDLKIIDTPQKTNVIPHGFHKFTVTVKVSSADTGVIFGNI 820
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 66 66 0.00091 102 3 11 22 0.45 28
29 0.48 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 476 (51 KB)
Total size of DFA: 85 KB (2065 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 7.61u 0.09s 7.70t Elapsed: 00:00:16
Total cpu time: 7.61u 0.09s 7.70t Elapsed: 00:00:17
Start: Thu Aug 15 11:28:05 2013 End: Thu Aug 15 11:28:22 2013