RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1396
         (66 letters)



>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
          HET: NAD; 2.27A {Pseudomonas putida}
          Length = 398

 Score = 29.9 bits (68), Expect = 0.030
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 27 GDLKLVERPQPVVLAPHDFCNIKANVKVAST 57
           DL++   P P +   +        +KV ST
Sbjct: 12 RDLRVETVPYPKLEHNNRKLEHAVILKVVST 42


>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
          metal-binding, oxidoreductase, PSI-2, protein structure
          initiative; 2.09A {Thermotoga maritima}
          Length = 404

 Score = 26.2 bits (58), Expect = 0.70
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 7/35 (20%)

Query: 27 GDLKLVERPQPVVLAPHDFCNIKANVKVASTENGI 61
           ++++ E P+P +  P +       +KV +   GI
Sbjct: 40 PEVRVEEVPEPRIEKPTE-----IIIKVKAC--GI 67


>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
          binding-site; 1.87A {Escherichia coli}
          Length = 346

 Score = 26.0 bits (58), Expect = 0.71
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 7/35 (20%)

Query: 27 GDLKLVERPQPVVLAPHDFCNIKANVKVASTENGI 61
          G +++ E   P +    +       VK+AS+  G+
Sbjct: 10 GIVRVAESVIPEIKHQDE-----VRVKIASS--GL 37


>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
          {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
          Length = 398

 Score = 25.3 bits (56), Expect = 1.3
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 27 GDLKLVERPQPVVLAPHD-FCNIKANVKVAST 57
          G +++ +   P +  P          +KV ST
Sbjct: 12 GKVEVQKIDYPKMQDPRGKKIEHGVILKVVST 43


>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
           protein, structural genomics, joint center for
           structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
           difficile}
          Length = 352

 Score = 25.2 bits (56), Expect = 1.6
 Identities = 4/44 (9%), Positives = 10/44 (22%), Gaps = 6/44 (13%)

Query: 27  GDLK-----LVERPQPVV-LAPHDFCNIKANVKVASTENGIIFG 64
            +        +     +  L       +   + V S     +F 
Sbjct: 244 EEFIHGIYNAINSDSTIFILDTGKEPRVTKMIDVLSGWTENVFA 287


>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
           protein, NPPSFA, national on protein structural and
           functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
           2dec_A* 2df8_A 2cb0_A*
          Length = 325

 Score = 24.8 bits (55), Expect = 2.2
 Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 6/33 (18%)

Query: 27  GDLK-----LVERPQPVV-LAPHDFCNIKANVK 53
            +++     + +    VV +    F   +  VK
Sbjct: 223 FEVRHGFKAIADEKTLVVLMVEEPFEWHEKLVK 255


>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
           glucosamine-6-phosphate deamina PSI, protein structure
           initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
          Length = 342

 Score = 23.6 bits (52), Expect = 5.3
 Identities = 3/23 (13%), Positives = 8/23 (34%), Gaps = 5/23 (21%)

Query: 27  GDLK-----LVERPQPVVLAPHD 44
            + +     LV++   V +    
Sbjct: 248 LEYRHGPKALVKKGTLVFMQKVS 270


>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
          oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
          {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
          Length = 366

 Score = 23.5 bits (51), Expect = 5.7
 Identities = 2/34 (5%), Positives = 11/34 (32%), Gaps = 7/34 (20%)

Query: 28 DLKLVERPQPVVLAPHDFCNIKANVKVASTENGI 61
           +++ +  +  + +          ++      GI
Sbjct: 12 GVQVKDVDEKKLDSYGK-----IKIRTIYN--GI 38


>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD;
          1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
          1pl6_A* 3qe3_A
          Length = 356

 Score = 22.9 bits (50), Expect = 8.8
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 8/35 (22%)

Query: 27 GDLKLVERPQPVVLAPHDFCNIKANVKVASTENGI 61
          GDL+L   P P    P++       +++ S   GI
Sbjct: 17 GDLRLENYPIP-EPGPNE-----VLLRMHSV--GI 43


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0780    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 931,063
Number of extensions: 40289
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 9
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)