RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1396
         (66 letters)



>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr
          virus [TaxId: 10376]}
          Length = 113

 Score = 23.6 bits (51), Expect = 1.5
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 24 ATLGDLKLVERPQPVVLAPHDFCNIKANVKVASTEN 59
          A++G L LV     ++L P     +   +     E 
Sbjct: 18 ASVGRLTLVN-KTTILLRPMKTTTVDLGLYARPPEG 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 222,627
Number of extensions: 7103
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)