BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13961
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 388/439 (88%), Gaps = 2/439 (0%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
MGKEK+HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVL 60
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
DKLKAERERGITIDIALWKFET K+ VT+IDAPGHRDFIKNMITGTSQADCA+LI+A G
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
GEFEAGISK+GQTREHALLAFTLGV+QLIV VNKMDS + + E+RF+EI KE S +IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK--WDESRFQEIVKETSNFIKK 178
Query: 181 IGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
+GYNP TV FVPISGW+GDNM+E + PW+KGW E K G GK L+EA+DAI PSR
Sbjct: 179 VGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
PT+KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM+VTFAPA +TTEVKSVEMHHE L+
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLE 298
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPV 360
+ VPGDNVGFNVKNVSVKE+RRG V GD+K PPK F A VIVLNHPGQIS GY+PV
Sbjct: 299 QGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPV 358
Query: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPP 420
LDCHTAHIAC+F E+ EK DRR+GK E++PK LKSGDAA++ VPSKPMCVE+FSE+PP
Sbjct: 359 LDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPP 418
Query: 421 LGRFAVRDMRQTVAVGVIK 439
LGRFAVRDMRQTVAVGVIK
Sbjct: 419 LGRFAVRDMRQTVAVGVIK 437
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 314/435 (72%), Gaps = 13/435 (2%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EK H+N+VVIGHVD GKST GHL+Y+ G I+++ +++ E++A+ GK SFK+AW+LDK+
Sbjct: 3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKM 62
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
K ERERGITID+ KFET K+ TIIDAPGHRDF+KNMITG SQAD A+L+V+A GEF
Sbjct: 63 KEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 122
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
EAG+S GQTREH LLA T+G++Q+IV VNKMD+ + Y + R+E + + ++K +GY
Sbjct: 123 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGY 182
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTE 243
+ F+P+S W GDN++E S MPW+ +G L+EALD + PP++P +
Sbjct: 183 QVDKIPFIPVSAWKGDNLIERSPNMPWY------------NGPTLVEALDQLQPPAKPVD 230
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAV 303
KPLR+P+Q+VY I G GTVPVGRVETGV++ G V F P + EV+S+EMH++ LQ+A
Sbjct: 231 KPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAE 290
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDC 363
PGDN+GF V+ VS +++RG VAG PP ++F A++ V+ HP I+ GYTPV+
Sbjct: 291 PGDNIGFAVRGVSKSDIKRGDVAGHLD-KPPTVAEEFEARIFVIWHPSAITVGYTPVIHV 349
Query: 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGR 423
HTA ++ + EIK K D +TG+ E+NP+ LK+GDAAI+ P KP+ VE FSE P LGR
Sbjct: 350 HTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGR 409
Query: 424 FAVRDMRQTVAVGVI 438
FA+RDM +TV +G++
Sbjct: 410 FAMRDMNRTVGIGIV 424
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 314/435 (72%), Gaps = 13/435 (2%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EK H+N+VVIGHVD GKST GHL+Y+ G I+++ +++ E++A+ GK SFK+AW+LDK+
Sbjct: 6 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKM 65
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
K ERERGITID+ KFET K+ TIIDAPGHRDF+KNMITG SQAD A+L+V+A GEF
Sbjct: 66 KEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 125
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
EAG+S GQTREH LLA T+G++Q+IV VNKMD+ + Y + R+E + + ++K +GY
Sbjct: 126 EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGY 185
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTE 243
+ F+P+S W GDN++E S MPW+ +G L+EALD + PP++P +
Sbjct: 186 QVDKIPFIPVSAWKGDNLIERSPNMPWY------------NGPTLVEALDQLQPPAKPVD 233
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAV 303
KPLR+P+Q+VY I G GTVPVGRVETGV++ G V F P + EV+S+EMH++ LQ+A
Sbjct: 234 KPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAE 293
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDC 363
PGDN+GF V+ VS +++RG VAG PP ++F A++ V+ HP I+ GYTPV+
Sbjct: 294 PGDNIGFAVRGVSKSDIKRGDVAGHLD-KPPTVAEEFEARIFVIWHPSAITVGYTPVIHV 352
Query: 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGR 423
HTA ++ + EIK K D +TG+ E+NP+ LK+GDAAI+ P KP+ VE FSE P LGR
Sbjct: 353 HTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGR 412
Query: 424 FAVRDMRQTVAVGVI 438
FA+RDM +TV +G++
Sbjct: 413 FAMRDMNRTVGIGIV 427
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 312/435 (71%), Gaps = 13/435 (2%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+K H+N++VIGHVD GKST G L+ G ID++T+++ E+ A+++GK S K+A++LD+L
Sbjct: 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 62
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
K ERERG+TI++ +FET K++ TIIDAPGHRDF+KNMITG SQAD A+L+V+A GE+
Sbjct: 63 KEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEY 122
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
EAG+S GQTREH +LA T+G+ QLIV VNKMD TEPPY E R++EI +VS +++ G+
Sbjct: 123 EAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTE 243
N V FVP+ GDN+ S+ M W+ G +E E LD + P +P +
Sbjct: 183 NTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLE------------EYLDQLELPPKPVD 230
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAV 303
KPLR+P+QDVY I G+GTVPVGRVE+GV+K G + F PA EV+S+E HH + +A
Sbjct: 231 KPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAE 290
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDC 363
PGDN+GFNV+ V K+++RG V G +PP +FTA++IV+ HP ++NGYTPVL
Sbjct: 291 PGDNIGFNVRGVEKKDIKRGDVVGHPN-NPPTVADEFTARIIVVWHPTALANGYTPVLHV 349
Query: 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGR 423
HTA +AC+ +E+ K D RTG+ E+NP+ LK GD AI+ P KP+CVE ++EFPPLGR
Sbjct: 350 HTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGR 409
Query: 424 FAVRDMRQTVAVGVI 438
FA+RDM +TV VG+I
Sbjct: 410 FAMRDMGKTVGVGII 424
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 164/434 (37%), Positives = 254/434 (58%), Gaps = 16/434 (3%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+K H+N+V IGHVD+GKST G ++Y G +DKRT+EK+E+EA+E + ++ +W LD
Sbjct: 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 73
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
+ ER++G T+++ FET K + TI+DAPGH+ F+ NMI G SQAD AVL+++A GEF
Sbjct: 74 QEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF 133
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
E G K GQTREHA+LA T GVK LIV +NKMD +S R+EE K+++ ++KK+G+
Sbjct: 134 ETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 193
Query: 184 NPAT-VAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPT 242
NP + F+P SG G N+ E SD PW+ G I LD + +R
Sbjct: 194 NPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLP------------FIPYLDNLPNFNRSV 241
Query: 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEA 302
+ P+RLP+ D YK +GTV +G++E+G I G + P EV +
Sbjct: 242 DGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFV 299
Query: 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLD 362
PG+N+ +K + +E+ GF+ D ++ + + F Q++++ H I GY VL
Sbjct: 300 APGENLKIRLKGIEEEEILPGFILCDP-SNLCHSGRTFDVQIVIIEHKSIICPGYNAVLH 358
Query: 363 CHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLG 422
HT + + D+++G+ ++ P+ +K I L + +C+E+F +FP +G
Sbjct: 359 IHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMG 418
Query: 423 RFAVRDMRQTVAVG 436
RF +RD +T+A+G
Sbjct: 419 RFTLRDEGKTIAIG 432
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/442 (37%), Positives = 257/442 (58%), Gaps = 23/442 (5%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI-GY 183
AG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GY
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 184 NPAT-VAFVPISGWHGDNMLEVSDK--MPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
N T V ++P+S + G N+ + D PW++ G L+E LD++ R
Sbjct: 221 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------GPSLLEYLDSMTHLER 268
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSV-EMHHEAL 299
P +P+ YK +GT+ G++E G IK V P N T EV ++ + E +
Sbjct: 269 KVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEI 326
Query: 300 QEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTP 359
++ GD V V+ +++ G+V +K +P AT F AQ+ +L P ++ GY+
Sbjct: 327 SSSICGDQVRLRVRG-DDSDVQTGYVLTSTK-NPVHATTRFIAQIAILELPSILTTGYSC 384
Query: 360 VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFP 419
V+ HTA FA++ K D +T + +++ P G I L P+C+E F ++
Sbjct: 385 VMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQ 443
Query: 420 PLGRFAVRDMRQTVAVG-VIKV 440
+GRF +RD TVAVG V+K+
Sbjct: 444 YMGRFTLRDQGTTVAVGKVVKI 465
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/438 (37%), Positives = 238/438 (54%), Gaps = 32/438 (7%)
Query: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 68 ERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 127
RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY-IKKIGYNPA 186
+NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ +
Sbjct: 298 LENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTS 355
Query: 187 TVAFVPISGWHGDNMLE--VSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEK 244
V FVPIS G N+++ SD W+K G L+ ALD ++PP +P K
Sbjct: 356 NVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKPYRK 403
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHE-ALQEAV 303
PLRL + DVY+ TV GRVE G ++ ++ + VK+V + + + AV
Sbjct: 404 PLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAV 462
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDC 363
GD V + ++ V +LR G + + + +P + + F A++ + G I +G T VL
Sbjct: 463 AGDTVTLQLADIEVNQLRPGDILSNYE-NPVRRVRSFVAEIQTFDIHGPILSGSTLVLHL 521
Query: 364 --HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPL 421
++ K + K R + K I L P+C+ E P L
Sbjct: 522 GRTVTSVSLKIVTVNNKRSRHIA--------SRKRALVRISFLDGLFPLCLA--EECPAL 571
Query: 422 GRFAVRDMRQTVAVGVIK 439
GRF +R TVA G++K
Sbjct: 572 GRFILRRSGDTVAAGIVK 589
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 44/370 (11%)
Query: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
H++ VV+GHVD+GKST G L+Y +++ + K ++E++ MGK SFK+AW++D+ E
Sbjct: 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 226
Query: 67 RERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
RERG+T+ I F T + TI+DAPGHRDF+ N I G SQAD A+L V T FE+G
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA 186
+GQT+EH LLA +LG+ LI+ +NKMD+ + +S+ RFEEIK ++ Y+ IG+
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED 344
Query: 187 TVAFVPISGWHGDNM--LEVSDKM-PWFKGWAI------------ERKEG-KADGKCLIE 230
+ +VPISG+ G+ + +E +D++ W+ G + + EG D L
Sbjct: 345 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 404
Query: 231 ALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVK 290
L+ I PS+ T L L G++E+G I+PG +T P+ + V
Sbjct: 405 VLEII--PSKKTSNDLAL--------------VSGKLESGSIQPGESLTIYPSEQSCIVD 448
Query: 291 SVEM--------HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTA 342
+++ +HE A+ GD V ++ ++++ G +A S + Q F
Sbjct: 449 KIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVL 508
Query: 343 QVIV--LNHP 350
++ +N P
Sbjct: 509 ELTTFDMNRP 518
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 44/370 (11%)
Query: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
H++ VV+GHVD+GKST G L+Y +++ + K ++E++ MGK SFK+AW++D+ E
Sbjct: 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 92
Query: 67 RERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
RERG+T+ I F T + TI+DAPGHRDF+ N I G SQAD A+L V T FE+G
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA 186
+GQT+EH LLA +LG+ LI+ +NKMD+ + +S+ RFEEIK ++ Y+ IG+
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVDIGFFED 210
Query: 187 TVAFVPISGWHGDNM--LEVSDKM-PWFKG-----------WAIERK-EG-KADGKCLIE 230
+ +VPISG+ G+ + +E +D++ W+ G + I ++ EG D L
Sbjct: 211 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 270
Query: 231 ALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVK 290
L+ I PS+ T L L G++E+G I+PG +T P+ + V
Sbjct: 271 VLEII--PSKKTSNDLAL--------------VSGKLESGSIQPGESLTIYPSEQSCIVD 314
Query: 291 SVEM--------HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTA 342
+++ +HE A+ GD V ++ ++++ G +A S + Q F
Sbjct: 315 KIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVL 374
Query: 343 QVIV--LNHP 350
++ +N P
Sbjct: 375 ELTTFDMNRP 384
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 196/366 (53%), Gaps = 42/366 (11%)
Query: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
H++ VV+GHVD+GKST G L+Y +++ + K ++E++ GK SFK+AW+ D+ E
Sbjct: 33 HLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEE 92
Query: 67 RERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
RERG+T+ I F T + TI+DAPGHRDF+ N I G SQAD A+L V T FE+G
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESG 152
Query: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA 186
+GQT+EH LLA +LG+ LI+ NK D+ + +S+ RFEEIK ++ Y+ IG+
Sbjct: 153 FDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVD--WSQQRFEEIKSKLLPYLVDIGFFED 210
Query: 187 TVAFVPISGWHGDNM--LEVSDKM-PWFKGWAI------------ERKEG-KADGKCLIE 230
+ +VPISG+ G+ + +E +D++ W+ G + + EG D L
Sbjct: 211 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLFS 270
Query: 231 ALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVK 290
L+ I PS+ T L L G++E+G I+PG +T P+ + V
Sbjct: 271 VLEII--PSKKTSNDLAL--------------VSGKLESGSIQPGESLTIYPSEQSCIVD 314
Query: 291 SVEM--------HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTA 342
+++ +HE A+ GD V ++ ++++ G +A S + Q F
Sbjct: 315 KIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVL 374
Query: 343 QVIVLN 348
++ +
Sbjct: 375 ELTTFD 380
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 216/461 (46%), Gaps = 92/461 (19%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + K +R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEE---MHKNPKTKRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNG 356
+ LQE + GDNVG ++ VS +E+ RG VL PG I
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQ---------------------VLAKPGSI--- 310
Query: 357 YTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPK-ALKSGDAAIIVLVPS-------- 407
TP HT A + KE+ R TG T P+ ++ D +V +P
Sbjct: 311 -TP----HTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPG 365
Query: 408 ----------KPMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
KP+ +E RFA+R+ +TV GV+
Sbjct: 366 DNVTFTVELIKPVALEEGL------RFAIREGGRTVGAGVV 400
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 216/461 (46%), Gaps = 92/461 (19%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + K +R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEE---MHKNPKTKRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNG 356
+ LQE + GDNVG ++ VS +E+ RG VL PG I
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQ---------------------VLAKPGSI--- 310
Query: 357 YTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPK-ALKSGDAAIIVLVPS-------- 407
TP HT A + KE+ R TG T P+ ++ D +V +P
Sbjct: 311 -TP----HTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPG 365
Query: 408 ----------KPMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
KP+ +E RFA+R+ +TV GV+
Sbjct: 366 DNVTFTVELIKPVALEEGL------RFAIREGGRTVGAGVV 400
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 211/448 (47%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L + E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTFVTAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + K +R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEE---MHKNPKTKRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + + + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDVTGVV-------------RLPQGVEMVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK--FEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTK--FEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 208/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVTAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDVTGVVQ-------------LPPGVEMVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVTAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y E E ++ G +DK
Sbjct: 8 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAA------ENPNVEVKDYGD--------IDK 53
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 54 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 113
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 114 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 163
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 164 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 215
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 216 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHR 275
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 276 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 333
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 334 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 379
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 380 ALEEGL------RFAIREGGRTVGAGVV 401
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 210/448 (46%), Gaps = 66/448 (14%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L + E E ++ G +DK
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAALTFVTAA------ENPNVEVKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 APEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV ++V +NK+D + P + ++ EV + +
Sbjct: 113 MP-------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDAILP-PS 239
+ V + G +L + + R E + K L++A+D +P P
Sbjct: 163 FPGDEVPVI-----RGSALLALEQ---MHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH
Sbjct: 215 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL------NHP 350
+ LQE + GDNVG ++ VS +E+ RG V + P F A V VL H
Sbjct: 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT--KFEASVYVLKKEEGGRHT 332
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
G S GY P T + ++ + + GD + KP+
Sbjct: 333 GFFS-GYRPQFYFRTTDV-TGVVQLPPGVE------------MVMPGDNVTFTVELIKPV 378
Query: 411 CVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+E RFA+R+ +TV GV+
Sbjct: 379 ALEEGL------RFAIREGGRTVGAGVV 400
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 205/443 (46%), Gaps = 70/443 (15%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T + K E G FK +D
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDNAP 45
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ER RGITI+ A ++ T+ + D PGH D++KNMITGT+ D +L+VAA G
Sbjct: 46 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
QTREH LLA +GV+ ++V VNK D+ + E ++ E+ + + GY
Sbjct: 106 -------QTREHLLLARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGYK 155
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPTE 243
+ G + + + P ++++ L++A+D +P P+R E
Sbjct: 156 GEETPIIV-----GSALCALEQRDPELGLKSVQK---------LLDAVDTYIPVPTRDLE 201
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFA--PANLTTEVKSVEMHHEALQE 301
KP LP++ VY I G GTV G +E G++K G F N+ T V +EM H++L
Sbjct: 202 KPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDR 261
Query: 302 AVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQISN 355
A GDN+G V+ + ++LRRG V + P Q AQV +L H +S+
Sbjct: 262 AEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPH--QKVEAQVYILTKEEGGRHKPFVSH 319
Query: 356 GYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415
+ PV+ T +AC+ K + G+ + L+ +PM +E
Sbjct: 320 -FMPVMFSLTWDMACRIILPPGK-------------ELAMPGEDLKLTLILRQPMILEKG 365
Query: 416 SEFPPLGRFAVRDMRQTVAVGVI 438
RF +RD +T+ G++
Sbjct: 366 Q------RFTLRDGNRTIGTGLV 382
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 180/351 (51%), Gaps = 40/351 (11%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T L Y + R +E ++ G +DK
Sbjct: 7 RTKRHVNVGTIGHVDHGKTTLTAALTY-VAAAENRNVE-----VKDYGD--------IDK 52
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
+ ER RGITI+ A ++ET+K + + +D GH D+IKNMITG +Q D A+L+V+A G
Sbjct: 53 AREERARGITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGR 112
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV+ ++V +NK+D + + ++ EV + +
Sbjct: 113 MR-------QTREHILLARQVGVRYIVVFMNKVDMVDDREL---LDLVEMEVRDLLNQYE 162
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC--LIEALDA-ILPPS 239
+ V + G +L + + K +R E + K L++A+D I
Sbjct: 163 FRGDEVRVIR-----GSALLALEE---MHKNRKTKRGENEWVDKIWELLDAIDEYIRTRV 214
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEMHH 296
R +K + ++DV+ I G GTV GR+E G +K G +V A T V VEMH
Sbjct: 215 RDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLARETRKTVVTGVEMHR 274
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL 347
+ LQE + GDNVG ++ VS +E+ RG V + S + T+ F A V +L
Sbjct: 275 KTLQEGIAGDNVGLLLRGVSREEVERGQVLA-KRGSITRHTK-FEASVYIL 323
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 202/445 (45%), Gaps = 70/445 (15%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
++K H+N+ IGHVD GK+T T + K E G FK +D
Sbjct: 10 RDKPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDN 54
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ER RGITI+ A ++ T+ + D PGH D++KN ITGT+ D +L+VAA G
Sbjct: 55 APEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDG- 113
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LLA +GV+ ++V VNK D+ + E ++ E+ + + G
Sbjct: 114 ------PXPQTREHLLLARQIGVEHVVVYVNKADAVQ---DSEXVELVELEIRELLTEFG 164
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241
Y + G + + + P ++++ L++A+D +P P+R
Sbjct: 165 YKGEETPIIV-----GSALCALEQRDPELGLKSVQK---------LLDAVDTYIPVPTRD 210
Query: 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFA--PANLTTEVKSVEMHHEAL 299
EKP LP++ VY I G GTV G +E G++K G F N+ T V +E H++L
Sbjct: 211 LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEXFHKSL 270
Query: 300 QEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQI 353
A GDN+G V+ + ++LRRG V + P Q AQV +L H +
Sbjct: 271 DRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQPH--QKVEAQVYILTKEEGGRHKPFV 328
Query: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVE 413
S+ + PV T AC+ K + G+ + L+ +P +E
Sbjct: 329 SH-FXPVXFSLTWDXACRIILPPGK-------------ELAXPGEDLKLTLILRQPXILE 374
Query: 414 SFSEFPPLGRFAVRDMRQTVAVGVI 438
RF +RD +T+ G++
Sbjct: 375 KGQ------RFTLRDGNRTIGTGLV 393
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 204/444 (45%), Gaps = 39/444 (8%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVL 60
+ K + + G+VD GKST G L++ I + +E +++++ G A ++
Sbjct: 20 ERKEXLRFLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLV 79
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
D L+AERE+GITID+A F T+K I D PGH + +N TG S D A+++V A
Sbjct: 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARY 139
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
G QTR H+ +A LG+K ++V +NK D + E FE IK + + +
Sbjct: 140 G-------VQTQTRRHSYIASLLGIKHIVVAINKXDLN--GFDERVFESIKADYLKFAEG 190
Query: 181 IGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
I + P T AFVP S GDN++ S++ PW+ G+ L E L+ + S
Sbjct: 191 IAFKPTTXAFVPXSALKGDNVVNKSERSPWYA------------GQSLXEILETVEIASD 238
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
LR P+Q V + G + +G++ G + P+ ++ VKS+ L+
Sbjct: 239 RNYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELE 298
Query: 301 EAVPGDNVGFNVKNVSVKELRRG--FVAGDSKASPPKATQDFTAQVI-VLNHPGQISNGY 357
+A PG V ++ ++ RG V D + P+ + F A ++ P Y
Sbjct: 299 QAGPGQAVTLTXEDEI--DISRGDLLVHAD---NVPQVSDAFDAXLVWXAEEPXLPGKKY 353
Query: 358 TPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENP-KALKSGDAAIIVLVPSKPMCVESFS 416
+ T+++ A I + D T EE P +L+ + + + P+ ++ +S
Sbjct: 354 D--IKRATSYVPGSIASITHRVDV---NTLEEGPASSLQLNEIGRVKVSLDAPIALDGYS 408
Query: 417 EFPPLGRFAVRD--MRQTVAVGVI 438
G F V D TVA G I
Sbjct: 409 SNRTTGAFIVIDRLTNGTVAAGXI 432
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 196/446 (43%), Gaps = 74/446 (16%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 48
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 109 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 161
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 162 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 198
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 199 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 258
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 259 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 314
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412
+TP + + ++ + E + + GD +V+ P+ +
Sbjct: 315 EGGRHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAM 368
Query: 413 ESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ RFA+R+ +TV GV+
Sbjct: 369 DDGL------RFAIREGGRTVGAGVV 388
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 196/446 (43%), Gaps = 74/446 (16%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 48
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 109 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 161
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 162 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 198
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 199 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 258
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 259 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 314
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412
+TP + + ++ + E + + GD +V+ P+ +
Sbjct: 315 EGGRHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAM 368
Query: 413 ESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ RFA+R+ +TV GV+
Sbjct: 369 DDGL------RFAIREGGRTVGAGVV 388
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 196/446 (43%), Gaps = 74/446 (16%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 49
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 110 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 162
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 163 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 199
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 259
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 260 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 315
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412
+TP + + ++ + E + + GD +V+ P+ +
Sbjct: 316 EGGRHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAM 369
Query: 413 ESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ RFA+R+ +TV GV+
Sbjct: 370 DDGL------RFAIREGGRTVGAGVV 389
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 196/446 (43%), Gaps = 74/446 (16%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 48
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 109 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 161
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 162 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 198
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 199 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 258
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 259 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 314
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412
+TP + + ++ + E + + GD +V+ P+ +
Sbjct: 315 EGGRHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAM 368
Query: 413 ESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ RFA+R+ +TV GV+
Sbjct: 369 DDGL------RFAIREGGRTVGAGVV 388
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 196/446 (43%), Gaps = 74/446 (16%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 49
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 110 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 162
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 163 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 199
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 200 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 259
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 260 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 315
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412
+TP + + ++ + E + + GD +V+ P+ +
Sbjct: 316 EGGRHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAM 369
Query: 413 ESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ RFA+R+ +TV GV+
Sbjct: 370 DDGL------RFAIREGGRTVGAGVV 389
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 194/441 (43%), Gaps = 68/441 (15%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T + A+ G + + + D
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVL--------------AKTYGGAARAFDQI-DNAP 45
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA G
Sbjct: 46 EEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 105
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
QTREH LL +GV +IV +NK D + E +E+ G
Sbjct: 106 -------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG-- 156
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAILP-PS 239
D P +G A++ EG A+ + L LD+ +P P
Sbjct: 157 ---------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 195
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSVEMHHE 297
R +KP LP++DV+ I G GTV GRVE G+IK G V T + VEM +
Sbjct: 196 RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRK 255
Query: 298 ALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGY 357
L E G+NVG ++ + +E+ RG V +K K F ++V +L+ +
Sbjct: 256 LLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRH 311
Query: 358 TPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSE 417
TP + + ++ + E + + GD +V+ P+ ++
Sbjct: 312 TPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAMDDGL- 364
Query: 418 FPPLGRFAVRDMRQTVAVGVI 438
RFA+R+ +TV GV+
Sbjct: 365 -----RFAIREGGRTVGAGVV 380
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 200/449 (44%), Gaps = 80/449 (17%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 333
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
G QTREH LL +GV +IV +NK D + E +E+
Sbjct: 394 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAI 235
G D P +G A++ EG A+ + L LD+
Sbjct: 447 FPG-----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483
Query: 236 LP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSV 292
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T + V
Sbjct: 484 IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV 543
Query: 293 EMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352
EM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 544 EMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--D 599
Query: 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKS---GDAAIIVLVPSKP 409
+TP + + ++ TG T E P+ ++ GD +V+ P
Sbjct: 600 EGGRHTPFFKGYRPQFYFRTTDV-------TG--TIELPEGVEMVMPGDNIKMVVTLIHP 650
Query: 410 MCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ ++ RFA+R+ +TV GV+
Sbjct: 651 IAMDDGL------RFAIREGGRTVGAGVV 673
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 204/450 (45%), Gaps = 82/450 (18%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ K H+N+ IGHVD GK+T T + + K G R ++
Sbjct: 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ------------------ 333
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKE-VSGYI 178
G QTREH LL +GV +IV +NK D + E +E +S Y
Sbjct: 394 DGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY- 445
Query: 179 KKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDA 234
+ GD+ P +G A++ EG A+ + L LD+
Sbjct: 446 ----------------DFPGDD-------TPIVRGSALKALEGDAEWEAKILELAGFLDS 482
Query: 235 ILP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKS 291
+P P R +KP LP++DV+ I G GTV GRVE G+IK G V T +
Sbjct: 483 YIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTG 542
Query: 292 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPG 351
VEM + L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 543 VEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSKDE 600
Query: 352 QISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKS---GDAAIIVLVPSK 408
+TP + + ++ TG T E P+ ++ GD +V+
Sbjct: 601 --GGRHTPFFKGYRPQFYFRTTDV-------TG--TIELPEGVEMVMPGDNIKMVVTLIH 649
Query: 409 PMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
P+ ++ RFA+R+ +TV GV+
Sbjct: 650 PIAMDDGL------RFAIREGGRTVGAGVV 673
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 189/443 (42%), Gaps = 82/443 (18%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ K H+N+ IGHVD GK+T T + VL K
Sbjct: 7 RTKPHVNVGTIGHVDHGKTTLTAAI-----------------------------TTVLAK 37
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA G
Sbjct: 38 TYGGAARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP 97
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
QTREH LL +GV +IV +NK D + E +E+ G
Sbjct: 98 MP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 150
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAILP- 237
D P +G A++ EG A+ + L LD+ +P
Sbjct: 151 -----------------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 187
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSVEMH 295
P R +KP LP++DV+ I G GTV GRVE G+IK G V T + VEM
Sbjct: 188 PERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF 247
Query: 296 HEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISN 355
+ L E G+NVG ++ + +E+ RG V +K K F ++V +L+
Sbjct: 248 RKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGG 303
Query: 356 GYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415
+TP + + ++ + E + + GD +V+ P+ ++
Sbjct: 304 RHTPFFKGYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAMDDG 357
Query: 416 SEFPPLGRFAVRDMRQTVAVGVI 438
RFA+R+ +TV GV+
Sbjct: 358 L------RFAIREGGRTVGAGVV 374
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 168/376 (44%), Gaps = 53/376 (14%)
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129
GITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 130 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVA 189
QTREH LL +GV +IV +NK D + E +E+ G
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG------- 106
Query: 190 FVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAILP-PSRPTEK 244
D P +G A++ EG A+ + L LD+ +P P R +K
Sbjct: 107 ----------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDK 150
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSVEMHHEALQEA 302
P LP++DV+ I G GTV GRVE G+IK G V T + VEM + L E
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLD 362
G+NVG ++ + +E+ RG V +K K F ++V +L+ +TP
Sbjct: 211 RAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFK 266
Query: 363 CHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLG 422
+ + ++ + E + + GD +V+ P+ ++
Sbjct: 267 GYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAMDDGL------ 314
Query: 423 RFAVRDMRQTVAVGVI 438
RFA+R+ +TV GV+
Sbjct: 315 RFAIREGGRTVGAGVV 330
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 168/376 (44%), Gaps = 53/376 (14%)
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129
GITI+ + +++T + +D PGH D++KNMITG +Q D A+L+VAA G
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP----- 55
Query: 130 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVA 189
QTREH LL +GV +IV +NK D + E +E+ G
Sbjct: 56 --QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG------- 106
Query: 190 FVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIEALDAILP-PSRPTEK 244
D P +G A++ EG A+ + L LD+ +P P R +K
Sbjct: 107 ----------------DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDK 150
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSVEMHHEALQEA 302
P LP++DV+ I G GTV GRVE G+IK G V T + VEM + L E
Sbjct: 151 PFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEG 210
Query: 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLD 362
G+NVG ++ + +E+ RG V +K K F ++V +L+ +TP
Sbjct: 211 RAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFK 266
Query: 363 CHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLG 422
+ + ++ + E + + GD +V+ P+ ++
Sbjct: 267 GYRPQFYFRTTDVTGTIE------LPEGVEMVMPGDNIKMVVTLIHPIAMDDGL------ 314
Query: 423 RFAVRDMRQTVAVGVI 438
RFA+R+ +TV GV+
Sbjct: 315 RFAIREGGRTVGAGVV 330
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 62/321 (19%)
Query: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
+IN+ + GH+D GK+T K E+ S DKL
Sbjct: 19 NINLGIFGHIDHGKTT-------------------LSKVLTEIASTSAH-----DKLPES 54
Query: 67 RERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
++RGITIDI F+ + +T++DAPGH D I+ +++ D A+++V A G
Sbjct: 55 QKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP---- 110
Query: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKE--VSGYIKKIGYN 184
QT EH L+ + +IV + K D+ A EEIK+ + I + +N
Sbjct: 111 ---KTQTGEHMLILDHFNI-PIIVVITKSDN-------AGTEEIKRTEMIMKSILQSTHN 159
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEK 244
+ +PIS G + E+ + +I L+ R TE
Sbjct: 160 LKNSSIIPISAKTGFGVDELKN--------------------LIITTLNN-AEIIRNTES 198
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVP 304
++PL + I G GTV G + G++K G + P N++T+V+S++ E++ EA
Sbjct: 199 YFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKA 258
Query: 305 GDNVGFNVKNVSVKELRRGFV 325
GD VG ++ V K++ RG +
Sbjct: 259 GDRVGMAIQGVDAKQIYRGXI 279
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 3/196 (1%)
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
P P+RLP+ D YK +GTV +G++E+G I G + P EV +
Sbjct: 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETD 59
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPV 360
PG+N+ +K + +E+ GF+ D + + + F AQ++++ H I GY V
Sbjct: 60 TVAPGENLKIRLKGIEEEEILPGFILCDPN-NLCHSGRTFDAQIVIIEHKSIICPGYNAV 118
Query: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPP 420
L HT + + D+++G+ ++ P+ +K I L + +C+E+F +FP
Sbjct: 119 LHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQ 178
Query: 421 LGRFAVRDMRQTVAVG 436
+GRF +RD +T+A+G
Sbjct: 179 MGRFTLRDEGKTIAIG 194
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 7/198 (3%)
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSV-EMHHEALQEAV 303
P +P+ YK +GT+ G++E G IK V P N T EV ++ + E + ++
Sbjct: 7 PFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSI 64
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDC 363
GD V V+ +++ G+V +K +P AT F AQ+ +L P ++ GY+ V+
Sbjct: 65 CGDQVRLRVRGDD-SDVQTGYVLTSTK-NPVHATTRFIAQIAILELPSILTTGYSCVMHI 122
Query: 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGR 423
HTA FA++ K D+ T + +++ P G I L P+C+E F ++ +GR
Sbjct: 123 HTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGR 181
Query: 424 FAVRDMRQTVAVG-VIKV 440
F +RD TVAVG V+K+
Sbjct: 182 FTLRDQGTTVAVGKVVKI 199
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 166/376 (44%), Gaps = 80/376 (21%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKYAWVLDKL 63
+ +NI ++GHVD GK+T T L G+ T ++E+ +G + K + ++
Sbjct: 9 QAEVNIGMVGHVDHGKTTLTKALT----GVWTDT------HSEELRRGITIKIGFADAEI 58
Query: 64 K--AERERGITIDIALWKFETSKFY--VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+ + R T I + ++F V+ ID+PGH + M+ G S D A+L++AA
Sbjct: 59 RRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAAN 118
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
QTREH + +G K +I+ NK++ + + + +IK+ + G +
Sbjct: 119 EP------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVA 172
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-P 238
+ +PIS HG N+ L++A++ +P P
Sbjct: 173 E------NAPIIPISALHGANI------------------------DVLVKAIEEFIPTP 202
Query: 239 SRPTEKP---LRLPLQDVYK--------IGGI--GTVPVGRVETG---VIKPGM------ 276
R + KP L L DV K +GG+ G++ G+++ G I+PG+
Sbjct: 203 KRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHG 262
Query: 277 LVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASP 333
+ + P +TTE+ S++ + ++EA PG VG K ++ +L G V G P
Sbjct: 263 RIKYEP--ITTEIVSLQAGGQFVEEAYPGGLVGIGTKLDPYLTKGDLMAGNVVGKPGKLP 320
Query: 334 PKATQDFTAQVIVLNH 349
P T D +V +L
Sbjct: 321 PVWT-DLRLEVHLLER 335
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 149/371 (40%), Gaps = 99/371 (26%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
+ +NI ++GHVD GK+T T + W D
Sbjct: 8 QAEVNIGMVGHVDHGKTTLTK---------------------------ALTGVWT-DTHS 39
Query: 65 AERERGITIDIALW-----------KFETSKF------------YVTIIDAPGHRDFIKN 101
E RGITI I ++ TS V+ IDAPGH +
Sbjct: 40 EELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTT 99
Query: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161
M+ G S D A+L++AA QTREH + +G K +I+ NK++ +
Sbjct: 100 MLAGASLMDGAILVIAANEP------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153
Query: 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM----LEVSDKMPWFKGWAIE 217
+ + +IK+ + G + + +PIS HG N+ + D +P K
Sbjct: 154 KALENYRQIKEFIEGTVAE------NAPIIPISALHGANIDVLVKAIEDFIPTPK----- 202
Query: 218 RKEGKADGKCLIEALDAILPPSRPTEKPLRLPLQDVYKIGGI--GTVPVGRVETG---VI 272
R K ++ + D ++P P +L +GG+ G++ G+++ G I
Sbjct: 203 RDPNKPPKMLVLRSFDV----NKPGTPPEKL-------VGGVLDGSIVQGKLKVGDEIEI 251
Query: 273 KPGM------LVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRG 323
+PG+ + + P +TTE+ S++ + ++EA PG VG K ++ +L G
Sbjct: 252 RPGVPYEEHGRIKYEP--ITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAG 309
Query: 324 FVAGDSKASPP 334
V G PP
Sbjct: 310 NVVGKPGKLPP 320
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 149/371 (40%), Gaps = 99/371 (26%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
+ +NI ++GHVD GK+T T + W D
Sbjct: 8 QAEVNIGMVGHVDHGKTTLTK---------------------------ALTGVWT-DTHS 39
Query: 65 AERERGITIDIAL-----------WKFETSKF------------YVTIIDAPGHRDFIKN 101
E RGITI I ++ TS V+ IDAPGH +
Sbjct: 40 EELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTT 99
Query: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161
M+ G S D A+L++AA QTREH + +G K +I+ NK++ +
Sbjct: 100 MLAGASLMDGAILVIAANEP------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153
Query: 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM----LEVSDKMPWFKGWAIE 217
+ + +IK+ + G + + +PIS HG N+ + D +P K
Sbjct: 154 KALENYRQIKEFIEGTVAE------NAPIIPISALHGANIDVLVKAIEDFIPTPK----- 202
Query: 218 RKEGKADGKCLIEALDAILPPSRPTEKPLRLPLQDVYKIGGI--GTVPVGRVETG---VI 272
R K ++ + D ++P P +L +GG+ G++ G+++ G I
Sbjct: 203 RDPNKPPKMLVLRSFDV----NKPGTPPEKL-------VGGVLGGSIVQGKLKVGDEIEI 251
Query: 273 KPGM------LVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRG 323
+PG+ + + P +TTE+ S++ + ++EA PG VG K ++ +L G
Sbjct: 252 RPGVPYEEHGRIKYEP--ITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAG 309
Query: 324 FVAGDSKASPP 334
V G PP
Sbjct: 310 NVVGKPGKLPP 320
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 29/206 (14%)
Query: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
INI V+ HVD+GK+T T L+Y G I E + KG+ + D ER
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAI---------TELGSVDKGTTR----TDNTLLER 49
Query: 68 ERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 127
+RGITI + F+ V IID PGH DF+ + S D A+L+++A + G+
Sbjct: 50 QRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISA-----KDGV 104
Query: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYI---KKIGYN 184
+ HAL +G+ I +NK+D S +++IK+++S I +K+
Sbjct: 105 QAQTRILFHALRK--MGIPT-IFFINKIDQNGIDLSTV-YQDIKEKLSAEIVIKQKVELY 160
Query: 185 P--ATVAFVPISGWHGDNMLEVSDKM 208
P F W D ++E +D +
Sbjct: 161 PNVCVTNFTESEQW--DTVIEGNDDL 184
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 145/371 (39%), Gaps = 99/371 (26%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
+ +NI +GHVD GK+T T + W D
Sbjct: 8 QAEVNIGXVGHVDHGKTTLTK---------------------------ALTGVWT-DTHS 39
Query: 65 AERERGITIDIAL-----------WKFETSKF------------YVTIIDAPGHRDFIKN 101
E RGITI I ++ TS V+ IDAPGH
Sbjct: 40 EELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTT 99
Query: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161
+ G S D A+L++AA QTREH +G K +I+ NK++ +
Sbjct: 100 XLAGASLXDGAILVIAANEP------CPRPQTREHLXALQIIGQKNIIIAQNKIELVDKE 153
Query: 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM----LEVSDKMPWFKGWAIE 217
+ + +IK+ + G + + +PIS HG N+ + D +P K
Sbjct: 154 KALENYRQIKEFIEGTVAE------NAPIIPISALHGANIDVLVKAIEDFIPTPK----- 202
Query: 218 RKEGKADGKCLIEALDAILPPSRPTEKPLRLPLQDVYKIGGI--GTVPVGRVETG---VI 272
R K ++ + D ++P P +L +GG+ G++ G+++ G I
Sbjct: 203 RDPNKPPKXLVLRSFDV----NKPGTPPEKL-------VGGVLGGSIVQGKLKVGDEIEI 251
Query: 273 KPGM------LVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRG 323
+PG+ + + P +TTE+ S++ + ++EA PG VG K ++ +L G
Sbjct: 252 RPGVPYEEHGRIKYEP--ITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLXAG 309
Query: 324 FVAGDSKASPP 334
V G PP
Sbjct: 310 NVVGKPGKLPP 320
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 135/330 (40%), Gaps = 67/330 (20%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
++K N +I HVD GKST L+ G I +R EK Q +LD
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISER-----EKREQ-----------LLDT 45
Query: 63 LKAERERGITIDI-ALWKFETSK----FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 117
L ERERGIT+ + A+ F +K + + +ID PGH DF + + + A+L++
Sbjct: 46 LDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
Query: 118 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY 177
A G EA N F V+Q +V + ++ + P A + +KK++
Sbjct: 106 ASQG-IEAQTVAN----------FWKAVEQDLVIIPVINKIDLP--SADVDRVKKQIE-- 150
Query: 178 IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237
+ +G +P KEG + L ++ I P
Sbjct: 151 -EVLGLDPEEAILA-------------------------SAKEGIGIEEILEAIVNRIPP 184
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEM 294
P +KPL+ + D Y G V R+ G +KPG ML++ TEV +
Sbjct: 185 PKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP 244
Query: 295 HHEALQEAVPGDNVGFNVKNV-SVKELRRG 323
+ GD VG+ ++ V+++R G
Sbjct: 245 KMTKFDKLSAGD-VGYIAASIKDVRDIRIG 273
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 141/332 (42%), Gaps = 72/332 (21%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKYAWVLDKL 63
+ +NI ++GHVD GK++ T L T ++ ++E+ +G S + + ++
Sbjct: 6 QAEVNIGMVGHVDHGKTSLTKAL----------TGVWTDRHSEELRRGISIRLGYADCEI 55
Query: 64 KAERERGI--TIDIALWKFETSKFY--VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 119
+ + G T ++F V+ +D+PGH + M++G S D A+L++AA
Sbjct: 56 RKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAAN 115
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
QT+EH + LG+ ++I+ NK+D + +E +E+IK+ V G I
Sbjct: 116 EP------CPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIA 169
Query: 180 KIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-P 238
+ +PIS H N+ L++A+ +P P
Sbjct: 170 E------NAPIIPISAHHEANI------------------------DVLLKAIQDFIPTP 199
Query: 239 SRPTEKPLRLPLQDVYKIGGIGT--------VPVGRVETGV--------IKPGMLVTFAP 282
R + R+ + + I GT V G + GV I+PG+ VT
Sbjct: 200 KRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGN 259
Query: 283 AN----LTTEVKSVEMHHEALQEAVPGDNVGF 310
LTT++ S+ + L++A PG +G
Sbjct: 260 KTFWKPLTTKIVSLAAGNTILRKAHPGGLIGV 291
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
N +I H+D GKST + +I CGG+ R +E A VLD + ERE
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME----------------AQVLDSMDLERE 49
Query: 69 RGITI---DIAL-WKFETSKFY-VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI + L +K + Y + ID PGH DF + + + A+L+V AG G
Sbjct: 50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 21/118 (17%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
N +I H+D GKST + +I CGG+ R +E A VLD + ERE
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREME----------------AQVLDSMDLERE 49
Query: 69 RGITI---DIAL-WKFETSKFY-VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI + L +K + Y + ID PGH DF + + + A+L+V AG G
Sbjct: 50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG 107
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 116/295 (39%), Gaps = 62/295 (21%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
++K N +I HVD GKST L+ G I +R EK Q +LD
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISER-----EKREQ-----------LLDT 45
Query: 63 LKAERERGITIDI-ALWKFETSK----FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 117
L ERERGIT+ A+ F +K + + +ID PGH DF + + + A+L++
Sbjct: 46 LDVERERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLID 105
Query: 118 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY 177
A G EA N F V+Q +V + ++ + P A + +KK++
Sbjct: 106 ASQG-IEAQTVAN----------FWKAVEQDLVIIPVINKIDLP--SADVDRVKKQIE-- 150
Query: 178 IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237
+ +G +P KEG + L ++ I P
Sbjct: 151 -EVLGLDPEEAILA-------------------------SAKEGIGIEEILEAIVNRIPP 184
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSV 292
P +KPL+ + D Y G V R+ G +KPG + EV V
Sbjct: 185 PKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTEV 239
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 3 KEKTHINIVVIGHVDSGKST----TTGHLIYKCGGIDKRTI---EKFEKEAQEMGKGSFK 55
K + +NI V+GHVD GK+T TG K G + I E +K + + S K
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCK 63
Query: 56 YAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115
D+ K R ++ IDAPGH + M++G + D A+L+
Sbjct: 64 SCGSDDEPKFLRR------------------ISFIDAPGHEVLMATMLSGAALMDGAILV 105
Query: 116 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVS 175
VAA QTREH + +GVK LI+ NK+D + +++ +IK+
Sbjct: 106 VAANEP------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159
Query: 176 GYIKKIGYNPATVAFVPISGWHGDNM 201
G + V +P+S H N+
Sbjct: 160 GTWAE------NVPIIPVSALHKINI 179
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NIV+ H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIVIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IID PGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
K + +NI V+GHVD GK+T L+ GI K +E ++G
Sbjct: 4 KVQPEVNIGVVGHVDHGKTT----LVQAITGI---WTSKHSEETIKLGYAETNIGVCESC 56
Query: 63 LKAERERGITIDIALWKFETSKFY--VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
K E + + KF ++ IDAPGH + M++G + D A+L+VAA
Sbjct: 57 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 116
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
QTREH + +GVK LI+ NK+D + +++ +IK+ G +
Sbjct: 117 P------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 170
Query: 181 IGYNPATVAFVPISGWHGDNM 201
V +P+S H N+
Sbjct: 171 ------NVPIIPVSALHKINI 185
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IAEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IIDAPGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKYAWVLD 61
K + +NI V+GHVD GK+T L+ GI K ++E+ +G + K +
Sbjct: 4 KVQPEVNIGVVGHVDHGKTT----LVQAITGIWT------SKHSEELKRGMTIKLGY--- 50
Query: 62 KLKAERERGITIDI-------------ALWKFETSKFY--VTIIDAPGHRDFIKNMITGT 106
AE G+ + + KF ++ IDAPGH + M++G
Sbjct: 51 ---AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGA 107
Query: 107 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166
+ D A+L+VAA QTREH + +GVK LI+ NK+D + ++
Sbjct: 108 ALMDGAILVVAANEP------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQ 161
Query: 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201
+ +IK+ G + V +P+S H N+
Sbjct: 162 YRQIKQFTKGTWAE------NVPIIPVSALHKINI 190
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKYAWVLD 61
K + +NI V+GHVD GK+T L+ GI K ++E+ +G + K +
Sbjct: 5 KVQPEVNIGVVGHVDHGKTT----LVQAITGIWT------SKHSEELKRGMTIKLGY--- 51
Query: 62 KLKAERERGITIDI-------------ALWKFETSKFY--VTIIDAPGHRDFIKNMITGT 106
AE G+ + + KF ++ IDAPGH + M++G
Sbjct: 52 ---AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGA 108
Query: 107 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166
+ D A+L+VAA QTREH + +GVK LI+ NK+D + ++
Sbjct: 109 ALMDGAILVVAANEP------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQ 162
Query: 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201
+ +IK+ G + V +P+S H N+
Sbjct: 163 YRQIKQFTKGTWAE------NVPIIPVSALHKINI 191
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IIDAPGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IIDAPGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 114/283 (40%), Gaps = 40/283 (14%)
Query: 68 ERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 127
++G + DI + + +DA + +K++IT + +D AVL + G+
Sbjct: 43 KKGTSSDITXYNNDKEGRNXVFVDAHSYPKTLKSLITALNISDIAVLCIPP------QGL 96
Query: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK----IGY 183
+ T E + LG K I+ + + DST + ++K SG + + I
Sbjct: 97 --DAHTGECIIALDLLGFKHGIIALTRSDSTHXHAIDELKAKLKVITSGTVLQDWECISL 154
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTE 243
N A P G D++ E+ IEA +A L
Sbjct: 155 NTNKSAKNPFEGV---------DELKARINEVAEK----------IEAENAEL-----NS 190
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAV 303
P R+ + + + G G V +G V+ G+ K P + E++S++ H + A
Sbjct: 191 LPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAP 250
Query: 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIV 346
G VG +KNV K++ RGF+ D + T D+T + V
Sbjct: 251 AGTRVGXRLKNVQAKDIERGFIISDKEI----VTTDYTLECTV 289
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IID PGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IID PGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IID PGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K E+ +G A +D ++ ERE
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK---------IGEVHEG----AATMDFMEQERE 60
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A+ + IID PGH DF + D A+++ + G
Sbjct: 61 RGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 113
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
+I H D+GK+T T L+ G I K K A+ D + ERE
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS---------DWMAMERE 83
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128
RGI++ ++ +F V ++D PGH+DF ++ + D A++++ A G
Sbjct: 84 RGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG------- 136
Query: 129 KNGQTREHALLAFTLGVKQLIVGVNKMD 156
QTR+ + + ++ VNKMD
Sbjct: 137 VEAQTRK-LMDVCRMRATPVMTFVNKMD 163
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 71
+I H D+GK+T T ++ I K G+GS ++A D ++ E++RGI
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVK--------GRGSNQHAKS-DWMEMEKQRGI 68
Query: 72 TIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
+I ++ +F V ++D PGH DF ++ + DC ++++ A G
Sbjct: 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 71
+I H D+GK+T T ++ I K G+GS ++A D ++ E++RGI
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVK--------GRGSNQHAKS-DWMEMEKQRGI 68
Query: 72 TIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
+I ++ +F V ++D PGH DF ++ + DC ++++ A G
Sbjct: 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EKT NI +I H+D+GK+TTT ++Y G I K E +G+ + W +
Sbjct: 8 EKTR-NIGIIAHIDAGKTTTTERILYYTGRIHK---------IGETHEGASQMDW----M 53
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
+ E++RGITI A V IID PGH DF + D AV ++ A +G
Sbjct: 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-- 111
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
QT A T GV + IV VNKMD
Sbjct: 112 -----VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 31/124 (25%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
N+ VI HVD GKST T L+ + G I A + G+ F D K E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGII----------SAAKAGEARFT-----DTRKDEQE 65
Query: 69 RGITID---IALW-------------KFETSKFYVTIIDAPGHRDFIKNMITGTSQADCA 112
RGITI I+L+ K + + F + +ID+PGH DF + D A
Sbjct: 66 RGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGA 125
Query: 113 VLIV 116
+++V
Sbjct: 126 LVVV 129
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 31/124 (25%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
N+ VI HVD GKST T L+ + G I A + G+ F D K E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGII----------SAAKAGEARFT-----DTRKDEQE 65
Query: 69 RGITID---IALW-------------KFETSKFYVTIIDAPGHRDFIKNMITGTSQADCA 112
RGITI I+L+ K + + F + +ID+PGH DF + D A
Sbjct: 66 RGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGA 125
Query: 113 VLIV 116
+++V
Sbjct: 126 LVVV 129
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EKT NI ++ H+D+GK+TTT ++Y G I K E +G+ + W +
Sbjct: 8 EKTR-NIGIMAHIDAGKTTTTERILYYTGRIHK---------IGETHEGASQMDW----M 53
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
+ E++RGITI A V IID PGH DF + D AV ++ A +G
Sbjct: 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-- 111
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
QT A T GV + IV VNKMD
Sbjct: 112 -----VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + HVD+GK+TTT +++ G + E+ G+ W++ E+E
Sbjct: 15 NIGICAHVDAGKTTTTERVLFYTG---------VNHKLGEVHDGAATTDWMVQ----EQE 61
Query: 69 RGITIDIA----LWK---FETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A WK + + V +ID PGH DF + D AV +V GT
Sbjct: 62 RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAV-VVFCGT- 119
Query: 122 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI 181
+G+ +T A GV + IV VNKMD + E+IK K++
Sbjct: 120 ---SGVEPQSETVWRQ--ANKYGVPR-IVYVNKMDRQGANFLRV-VEQIK-------KRL 165
Query: 182 GYNPATVAF 190
G+ P V
Sbjct: 166 GHTPVPVQL 174
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EKT NI +I H+D+GK+TTT ++Y G I K E +G+ + W +
Sbjct: 8 EKTR-NIGIIAHIDAGKTTTTERILYYTGRIHK---------IGETHEGASQMDW----M 53
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
+ E++RGITI A V IID PGH D + D AV ++ A +G
Sbjct: 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG-- 111
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
QT A T GV + IV VNKMD
Sbjct: 112 -----VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69
+I H D+GK+T T L+ G I K K A+ D + E++R
Sbjct: 16 FAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS---------DWXELEKQR 66
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
GI++ ++ +F + + ++D PGH DF ++ + D A+ ++ A G
Sbjct: 67 GISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKG 118
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
EKT NI ++ H+D+GK+TTT ++Y G I K E +G+ + W +
Sbjct: 8 EKTR-NIGIMAHIDAGKTTTTERILYYTGRIHK---------IGETHEGASQMDW----M 53
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
+ E++RGITI A V IID PGH D + D AV ++ A +G
Sbjct: 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSG-- 111
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
QT A T GV + IV VNKMD
Sbjct: 112 -----VEPQTETVWRQATTYGVPR-IVFVNKMD 138
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT +++ G + E+ G+ W ++ E+E
Sbjct: 11 NIGISAHIDAGKTTTTERILFYTG---------VNHKIGEVHDGAATMDW----MEQEQE 57
Query: 69 RGITI----DIALWKFETSKF---YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A W ++ + IID PGH DF + D AV++ A G
Sbjct: 58 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG 117
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT +++ G + E+ G+ W ++ E+E
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTG---------VNHKIGEVHDGAATMDW----MEQEQE 58
Query: 69 RGITI----DIALWKFETSKF---YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
RGITI A W ++ + IID PGH DF + D AV++ A G
Sbjct: 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG 118
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
+ ++GH SGK+T T L+YK G ++R E G + Y + K R
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRG-------RVEEGTTTTDYT---PEAKLHR- 59
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128
T+ + V ++DAPG+ DF+ + AD A++ V+A EAG+
Sbjct: 60 --TTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA-----EAGVQ 112
Query: 129 KNGQTREHALLAFTLGVKQLIVGVNKMD 156
T +A LG+ +++V V K+D
Sbjct: 113 VG--TERAWTVAERLGLPRMVV-VTKLD 137
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 45/198 (22%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69
+ ++GHVD GK+T +DK + K + A E G
Sbjct: 7 VTIMGHVDHGKTTL----------LDK--LRKTQVAAMEAG------------------- 35
Query: 70 GITIDIALWKFET-SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128
GIT I + S +T +D PGH F GT D +L+VAA G + +
Sbjct: 36 GITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV- 94
Query: 129 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATV 188
++ +HA A +++ +NK D +EA E++KKE+ Y V
Sbjct: 95 ---ESIQHAKDAHV----PIVLAINKCDK-----AEADPEKVKKELLAYDVVCEDYGGDV 142
Query: 189 AFVPISGWHGDNMLEVSD 206
V +S G+NM+ +++
Sbjct: 143 QAVHVSALTGENMMALAE 160
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQA 109
GK + A K+ + GIT I ++ + +T +D PGH F G
Sbjct: 20 GKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVT 79
Query: 110 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159
D +L+VAA G + + HA A +IV +NKMD E
Sbjct: 80 DIVILVVAADDGVMPQTV----EAINHAKAANV----PIIVAINKMDKPE 121
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
GIT I + ET +T +D PGH F G D VL+VAA G
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 41/113 (36%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G
Sbjct: 9 NIGIAAHIDAGKTTTTERILYYTG------------------------------------ 32
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
I + WK + IID PGH DF + D A+++ + G
Sbjct: 33 -RIAVTTCFWK----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG 80
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 408 KPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHGNKYLPTY 452
+P+ V+ S F R RD RQ +A VI G Y P Y
Sbjct: 95 RPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEY 139
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPS--K 408
G I+NGY P C T K KEKC TT++N + + D ++ + P K
Sbjct: 21 GLIANGYDPNRICVTNRSLDKLDFFKEKCGVH---TTQDNRQGALNADVVVLAVKPHQIK 77
Query: 409 PMCVE 413
+C E
Sbjct: 78 XVCEE 82
>pdb|1VGG|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
pdb|1VGG|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1634 From Thermus Thermophilus Hb8
Length = 161
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 289 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 322
+K+VE HEAL AVPG G S K L R
Sbjct: 24 IKTVEDLHEALVTAVPGIRFGLAFSEASGKRLVR 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,319,617
Number of Sequences: 62578
Number of extensions: 609148
Number of successful extensions: 1619
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1303
Number of HSP's gapped (non-prelim): 114
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)