Query psy13961
Match_columns 459
No_of_seqs 349 out of 3205
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 15:59:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 2E-101 3E-106 734.2 44.7 427 1-442 1-427 (428)
2 PLN00043 elongation factor 1-a 100.0 2.9E-91 6.2E-96 705.4 51.9 434 1-446 1-434 (447)
3 PTZ00141 elongation factor 1- 100.0 9.6E-90 2.1E-94 695.0 52.0 433 1-445 1-433 (446)
4 TIGR00483 EF-1_alpha translati 100.0 5.8E-83 1.3E-87 648.1 51.0 424 1-443 1-424 (426)
5 PRK12317 elongation factor 1-a 100.0 4.8E-83 1E-87 648.9 50.4 420 3-444 2-423 (425)
6 KOG0458|consensus 100.0 2.5E-83 5.4E-88 629.4 37.7 425 4-442 174-602 (603)
7 KOG0459|consensus 100.0 1.4E-81 3.1E-86 589.5 32.0 423 4-442 76-500 (501)
8 COG2895 CysN GTPases - Sulfate 100.0 1.7E-79 3.6E-84 567.8 36.0 413 4-445 3-419 (431)
9 PRK05124 cysN sulfate adenylyl 100.0 1.8E-77 4E-82 609.9 47.8 413 2-442 22-438 (474)
10 TIGR02034 CysN sulfate adenyly 100.0 1.1E-76 2.3E-81 596.1 46.0 402 8-438 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 4.9E-73 1.1E-77 600.2 50.1 413 4-445 21-437 (632)
12 PLN03126 Elongation factor Tu; 100.0 2.1E-71 4.5E-76 562.5 44.3 388 3-442 77-477 (478)
13 CHL00071 tufA elongation facto 100.0 3.7E-70 7.9E-75 549.8 45.7 389 2-442 7-408 (409)
14 PRK12735 elongation factor Tu; 100.0 1.1E-69 2.4E-74 544.0 45.9 380 3-442 8-395 (396)
15 PRK00049 elongation factor Tu; 100.0 3.1E-69 6.8E-74 540.3 46.5 380 3-442 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 4.9E-69 1.1E-73 539.1 45.9 378 3-442 8-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 3.1E-68 6.7E-73 534.1 46.8 379 2-442 7-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 3.2E-67 7E-72 529.7 45.7 376 4-442 58-446 (447)
19 KOG0460|consensus 100.0 5.8E-66 1.3E-70 474.5 25.0 383 3-445 50-440 (449)
20 COG0050 TufB GTPases - transla 100.0 3.8E-64 8.2E-69 454.4 32.6 377 4-442 9-393 (394)
21 PTZ00327 eukaryotic translatio 100.0 2.7E-59 5.8E-64 470.7 40.4 344 4-440 31-451 (460)
22 COG5258 GTPBP1 GTPase [General 100.0 3.6E-58 7.8E-63 429.0 32.1 361 4-441 114-526 (527)
23 PRK10512 selenocysteinyl-tRNA- 100.0 1.1E-57 2.3E-62 476.1 38.8 346 9-452 2-352 (614)
24 PRK04000 translation initiatio 100.0 1.9E-55 4.1E-60 442.1 39.7 343 3-438 5-410 (411)
25 TIGR03680 eif2g_arch translati 100.0 4.4E-55 9.6E-60 439.9 40.5 342 4-438 1-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 1.3E-53 2.8E-58 444.6 39.6 341 8-448 1-344 (581)
27 KOG0463|consensus 100.0 5.8E-54 1.3E-58 399.4 21.3 364 7-446 133-551 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 3E-51 6.4E-56 393.2 30.8 338 9-445 2-343 (447)
29 KOG0052|consensus 100.0 9.6E-50 2.1E-54 378.5 15.2 373 1-443 1-373 (391)
30 KOG1143|consensus 100.0 8.5E-48 1.9E-52 358.0 25.0 363 7-444 167-585 (591)
31 COG5257 GCD11 Translation init 100.0 9.7E-44 2.1E-48 325.8 33.5 343 5-440 8-413 (415)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 5.9E-43 1.3E-47 363.7 29.9 278 8-331 2-289 (594)
33 PRK10218 GTP-binding protein; 100.0 3.3E-40 7E-45 342.5 29.0 280 6-331 4-293 (607)
34 COG1217 TypA Predicted membran 100.0 3E-39 6.4E-44 309.2 28.4 307 5-357 3-324 (603)
35 PRK05433 GTP-binding protein L 100.0 1.7E-39 3.7E-44 339.1 28.9 272 1-331 1-282 (600)
36 TIGR01393 lepA GTP-binding pro 100.0 4.9E-39 1.1E-43 335.3 29.9 267 6-331 2-278 (595)
37 cd01883 EF1_alpha Eukaryotic e 100.0 3.6E-39 7.9E-44 298.8 22.3 218 9-238 1-218 (219)
38 KOG0462|consensus 100.0 2.5E-39 5.4E-44 315.5 21.6 264 6-330 59-332 (650)
39 KOG0461|consensus 100.0 5.8E-38 1.3E-42 289.8 23.0 351 1-416 1-380 (522)
40 COG0481 LepA Membrane GTPase L 100.0 1E-37 2.2E-42 299.6 25.3 268 4-330 6-283 (603)
41 cd04166 CysN_ATPS CysN_ATPS su 100.0 9.2E-37 2E-41 280.5 22.3 207 9-238 1-207 (208)
42 PRK07560 elongation factor EF- 100.0 1.1E-35 2.3E-40 319.3 26.5 301 3-330 16-375 (731)
43 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.9E-35 4.1E-40 267.6 20.7 195 6-239 1-195 (195)
44 PRK00741 prfC peptide chain re 100.0 2E-34 4.4E-39 296.2 28.6 299 5-330 8-380 (526)
45 PRK00007 elongation factor G; 100.0 7.2E-34 1.6E-38 303.6 29.8 291 6-330 9-394 (693)
46 COG0480 FusA Translation elong 100.0 4.5E-34 9.9E-39 298.1 27.4 297 4-330 7-392 (697)
47 TIGR00503 prfC peptide chain r 100.0 1.3E-33 2.7E-38 290.4 28.0 296 5-330 9-381 (527)
48 PRK12739 elongation factor G; 100.0 1.6E-33 3.5E-38 301.0 28.9 291 6-330 7-391 (691)
49 PRK05306 infB translation init 100.0 2.5E-33 5.4E-38 297.1 27.4 246 6-328 289-542 (787)
50 TIGR00484 EF-G translation elo 100.0 7.1E-33 1.5E-37 296.4 29.5 291 6-330 9-392 (689)
51 TIGR00487 IF-2 translation ini 100.0 6.4E-33 1.4E-37 287.9 27.7 244 6-327 86-339 (587)
52 PRK13351 elongation factor G; 100.0 4.9E-32 1.1E-36 290.6 28.6 291 6-330 7-390 (687)
53 TIGR00490 aEF-2 translation el 100.0 1.1E-32 2.3E-37 295.4 22.9 302 2-330 14-374 (720)
54 PF00009 GTP_EFTU: Elongation 100.0 7.3E-33 1.6E-37 250.8 18.1 184 5-238 1-188 (188)
55 COG4108 PrfC Peptide chain rel 100.0 9E-33 2E-37 263.5 18.0 299 6-331 11-383 (528)
56 PRK12740 elongation factor G; 100.0 2.4E-31 5.2E-36 284.9 26.8 264 13-330 1-373 (668)
57 CHL00189 infB translation init 100.0 3.4E-31 7.5E-36 278.3 25.6 247 6-328 243-500 (742)
58 PLN00116 translation elongatio 100.0 3.8E-31 8.1E-36 287.3 25.3 301 3-330 15-471 (843)
59 PRK04004 translation initiatio 100.0 4.6E-30 9.9E-35 267.3 27.0 205 87-326 73-325 (586)
60 TIGR00491 aIF-2 translation in 100.0 1.3E-29 2.9E-34 262.6 26.0 254 7-326 4-323 (590)
61 PTZ00416 elongation factor 2; 100.0 1.4E-29 3E-34 274.5 27.2 301 4-330 16-467 (836)
62 KOG0466|consensus 100.0 3.8E-31 8.2E-36 241.0 9.4 343 5-440 36-458 (466)
63 KOG1145|consensus 100.0 7.6E-30 1.7E-34 249.2 18.4 233 6-311 152-392 (683)
64 KOG0465|consensus 100.0 3.1E-30 6.8E-35 254.5 15.7 292 5-330 37-421 (721)
65 COG0532 InfB Translation initi 100.0 4.8E-29 1E-33 246.4 21.1 229 6-308 4-243 (509)
66 cd01885 EF2 EF2 (for archaea a 100.0 2.3E-28 4.9E-33 225.0 15.8 203 8-239 1-222 (222)
67 PRK14845 translation initiatio 99.9 2.6E-25 5.7E-30 240.7 25.0 225 67-326 490-780 (1049)
68 cd01889 SelB_euk SelB subfamil 99.9 9.4E-26 2E-30 205.0 17.3 174 8-239 1-188 (192)
69 cd01888 eIF2_gamma eIF2-gamma 99.9 6.8E-26 1.5E-30 207.5 15.9 167 8-238 1-200 (203)
70 cd04167 Snu114p Snu114p subfam 99.9 2.9E-25 6.4E-30 205.0 17.7 201 8-238 1-212 (213)
71 cd01886 EF-G Elongation factor 99.9 1.8E-25 3.9E-30 212.3 15.8 160 9-198 1-160 (270)
72 cd04165 GTPBP1_like GTPBP1-lik 99.9 4E-25 8.7E-30 204.4 17.4 164 9-201 1-211 (224)
73 cd01891 TypA_BipA TypA (tyrosi 99.9 4.8E-25 1E-29 200.7 17.6 190 7-238 2-193 (194)
74 cd04168 TetM_like Tet(M)-like 99.9 6E-25 1.3E-29 205.2 18.6 144 9-178 1-144 (237)
75 cd03704 eRF3c_III This family 99.9 3.7E-25 7.9E-30 181.2 13.0 106 336-441 2-108 (108)
76 cd04169 RF3 RF3 subfamily. Pe 99.9 2.5E-24 5.5E-29 204.3 18.3 150 7-178 2-151 (267)
77 cd01890 LepA LepA subfamily. 99.9 4E-24 8.7E-29 191.8 17.7 173 8-238 1-178 (179)
78 KOG0464|consensus 99.9 3.4E-26 7.4E-31 216.4 4.0 296 6-331 36-420 (753)
79 cd04093 HBS1_C HBS1_C: this fa 99.9 5E-24 1.1E-28 174.4 14.9 106 336-441 2-107 (107)
80 KOG0469|consensus 99.9 4.6E-25 1E-29 213.0 9.9 316 1-342 13-485 (842)
81 cd03705 EF1_alpha_III Domain I 99.9 4.9E-24 1.1E-28 173.5 12.2 103 336-438 2-104 (104)
82 cd04171 SelB SelB subfamily. 99.9 3.2E-23 7E-28 182.8 17.7 153 8-201 1-154 (164)
83 cd00881 GTP_translation_factor 99.9 1.4E-22 3.1E-27 183.0 17.8 179 9-238 1-188 (189)
84 KOG1144|consensus 99.9 1.7E-22 3.8E-27 203.0 15.8 226 7-300 475-770 (1064)
85 KOG0467|consensus 99.9 1E-21 2.2E-26 198.7 21.1 173 6-201 8-205 (887)
86 cd04170 EF-G_bact Elongation f 99.9 8.1E-22 1.8E-26 188.4 17.0 144 9-178 1-144 (268)
87 cd04095 CysN_NoDQ_III TCysN_No 99.9 1.2E-21 2.7E-26 158.8 12.8 100 336-438 2-103 (103)
88 PF03143 GTP_EFTU_D3: Elongati 99.9 8.9E-22 1.9E-26 157.9 11.8 98 333-441 1-98 (99)
89 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.6E-20 3.6E-25 166.3 15.9 148 9-201 2-154 (168)
90 COG1159 Era GTPase [General fu 99.9 2.9E-20 6.2E-25 172.2 17.3 178 4-253 3-195 (298)
91 cd01513 Translation_factor_III 99.8 1.5E-20 3.2E-25 152.6 13.1 101 336-438 2-102 (102)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.9E-20 1.5E-24 162.3 12.4 153 9-201 1-157 (167)
93 PF02421 FeoB_N: Ferrous iron 99.8 4.1E-20 8.8E-25 159.3 10.2 141 8-201 1-149 (156)
94 COG1160 Predicted GTPases [Gen 99.8 2.3E-19 4.9E-24 175.3 14.4 154 6-203 177-341 (444)
95 PRK00093 GTP-binding protein D 99.8 2.8E-19 6E-24 183.0 15.2 165 5-215 171-347 (435)
96 cd03693 EF1_alpha_II EF1_alpha 99.8 3.6E-19 7.7E-24 140.6 11.5 89 243-331 2-90 (91)
97 TIGR00436 era GTP-binding prot 99.8 1.1E-18 2.4E-23 166.9 16.7 156 9-238 2-165 (270)
98 KOG0468|consensus 99.8 1.1E-17 2.5E-22 167.0 23.2 157 2-180 123-290 (971)
99 PRK15494 era GTPase Era; Provi 99.8 1.7E-18 3.6E-23 170.3 16.4 174 6-253 51-239 (339)
100 TIGR03594 GTPase_EngA ribosome 99.8 1.2E-18 2.6E-23 178.1 15.7 154 6-204 171-335 (429)
101 COG1160 Predicted GTPases [Gen 99.8 6.7E-19 1.4E-23 172.0 13.0 153 8-237 4-165 (444)
102 cd04154 Arl2 Arl2 subfamily. 99.8 3.4E-18 7.5E-23 152.5 14.7 148 5-201 12-163 (173)
103 cd01895 EngA2 EngA2 subfamily. 99.8 6.1E-18 1.3E-22 150.1 16.0 151 7-201 2-163 (174)
104 cd04157 Arl6 Arl6 subfamily. 99.8 3E-18 6.6E-23 150.8 13.6 146 9-201 1-152 (162)
105 cd01864 Rab19 Rab19 subfamily. 99.8 3.8E-18 8.3E-23 150.9 13.9 147 7-201 3-154 (165)
106 cd03698 eRF3_II_like eRF3_II_l 99.8 3.6E-18 7.9E-23 132.5 10.7 83 245-328 1-83 (83)
107 cd01894 EngA1 EngA1 subfamily. 99.8 9.2E-18 2E-22 146.7 13.8 138 11-201 1-146 (157)
108 cd04151 Arl1 Arl1 subfamily. 99.8 8.1E-18 1.8E-22 147.7 13.5 144 9-201 1-148 (158)
109 TIGR03598 GTPase_YsxC ribosome 99.8 1.5E-17 3.2E-22 149.3 15.1 151 4-201 15-178 (179)
110 cd04149 Arf6 Arf6 subfamily. 99.8 9.9E-18 2.1E-22 148.8 13.0 148 5-201 7-158 (168)
111 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.9E-17 4.2E-22 145.6 14.5 145 8-201 1-149 (159)
112 cd04124 RabL2 RabL2 subfamily. 99.7 1.9E-17 4.1E-22 146.0 14.1 144 8-201 1-146 (161)
113 cd01898 Obg Obg subfamily. Th 99.7 2.3E-17 5.1E-22 146.4 13.7 144 9-201 2-159 (170)
114 PRK03003 GTP-binding protein D 99.7 2.5E-17 5.4E-22 169.5 15.6 153 6-204 210-373 (472)
115 cd01879 FeoB Ferrous iron tran 99.7 1.4E-17 3.1E-22 145.8 11.6 137 12-201 1-145 (158)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4E-17 8.6E-22 145.8 14.6 147 6-201 14-164 (174)
117 cd04114 Rab30 Rab30 subfamily. 99.7 3.3E-17 7.2E-22 145.3 13.9 152 1-201 1-157 (169)
118 cd04089 eRF3_II eRF3_II: domai 99.7 1.9E-17 4.2E-22 128.0 10.7 82 245-328 1-82 (82)
119 PLN00223 ADP-ribosylation fact 99.7 4.9E-17 1.1E-21 146.1 14.9 148 5-201 15-166 (181)
120 smart00177 ARF ARF-like small 99.7 4.1E-17 8.8E-22 145.9 14.2 148 5-201 11-162 (175)
121 PRK00089 era GTPase Era; Revie 99.7 7.1E-17 1.5E-21 156.4 16.9 149 5-201 3-159 (292)
122 cd03694 GTPBP_II Domain II of 99.7 1.8E-17 3.9E-22 129.6 10.2 83 246-328 1-87 (87)
123 cd01861 Rab6 Rab6 subfamily. 99.7 2.8E-17 6.1E-22 144.5 12.8 145 8-201 1-150 (161)
124 cd04158 ARD1 ARD1 subfamily. 99.7 3.6E-17 7.9E-22 145.3 13.1 144 9-201 1-149 (169)
125 COG2229 Predicted GTPase [Gene 99.7 1.4E-16 3E-21 136.9 15.8 158 4-201 7-166 (187)
126 cd01897 NOG NOG1 is a nucleola 99.7 5.5E-17 1.2E-21 143.8 13.9 145 8-201 1-156 (168)
127 cd01860 Rab5_related Rab5-rela 99.7 4E-17 8.7E-22 143.9 12.9 147 8-201 2-151 (163)
128 cd04113 Rab4 Rab4 subfamily. 99.7 3.3E-17 7.1E-22 144.2 12.2 145 8-201 1-150 (161)
129 cd00879 Sar1 Sar1 subfamily. 99.7 4.8E-17 1.1E-21 147.3 13.4 152 4-201 16-179 (190)
130 cd01862 Rab7 Rab7 subfamily. 99.7 1.6E-16 3.4E-21 141.3 16.3 146 8-201 1-155 (172)
131 cd00878 Arf_Arl Arf (ADP-ribos 99.7 7.3E-17 1.6E-21 141.5 13.9 144 9-201 1-148 (158)
132 cd04145 M_R_Ras_like M-Ras/R-R 99.7 6.4E-17 1.4E-21 142.6 13.6 148 6-201 1-152 (164)
133 cd04106 Rab23_lke Rab23-like s 99.7 7.9E-17 1.7E-21 141.8 14.2 145 8-201 1-151 (162)
134 smart00175 RAB Rab subfamily o 99.7 1.3E-16 2.9E-21 140.5 15.6 145 8-201 1-150 (164)
135 TIGR03594 GTPase_EngA ribosome 99.7 4E-17 8.8E-22 166.8 13.9 140 9-201 1-148 (429)
136 PRK03003 GTP-binding protein D 99.7 9.1E-17 2E-21 165.4 15.8 142 7-201 38-187 (472)
137 TIGR00231 small_GTP small GTP- 99.7 5.1E-17 1.1E-21 141.4 11.7 147 8-201 2-152 (161)
138 cd03697 EFTU_II EFTU_II: Elong 99.7 3.3E-17 7.2E-22 128.2 9.2 84 246-329 1-86 (87)
139 PTZ00133 ADP-ribosylation fact 99.7 1.5E-16 3.2E-21 143.1 14.5 148 5-201 15-166 (182)
140 smart00178 SAR Sar1p-like memb 99.7 1.4E-16 3E-21 143.6 14.2 151 5-201 15-173 (184)
141 cd01865 Rab3 Rab3 subfamily. 99.7 6.9E-17 1.5E-21 142.9 12.0 145 8-201 2-151 (165)
142 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.6E-16 3.6E-21 145.3 14.7 146 8-201 1-156 (201)
143 cd01867 Rab8_Rab10_Rab13_like 99.7 7.8E-17 1.7E-21 142.9 12.2 146 7-201 3-153 (167)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 6.9E-17 1.5E-21 145.5 11.8 151 6-201 2-158 (183)
145 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.4E-16 3E-21 141.0 13.5 146 7-201 2-152 (166)
146 cd04120 Rab12 Rab12 subfamily. 99.7 1.5E-16 3.2E-21 145.1 13.9 147 9-203 2-153 (202)
147 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.9E-16 4.2E-21 139.0 14.2 145 8-201 2-150 (162)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.5E-16 3.2E-21 138.9 13.3 135 8-201 2-145 (157)
149 cd04116 Rab9 Rab9 subfamily. 99.7 5.7E-16 1.2E-20 137.6 17.2 148 5-201 3-159 (170)
150 cd03696 selB_II selB_II: this 99.7 1E-16 2.2E-21 124.5 10.6 82 246-327 1-82 (83)
151 PRK04213 GTP-binding protein; 99.7 2.3E-16 4.9E-21 144.3 14.7 163 6-238 8-193 (201)
152 cd01866 Rab2 Rab2 subfamily. 99.7 8.8E-17 1.9E-21 142.7 11.6 148 7-201 4-154 (168)
153 cd01863 Rab18 Rab18 subfamily. 99.7 3.8E-16 8.3E-21 137.3 15.5 146 8-201 1-150 (161)
154 KOG0092|consensus 99.7 1E-16 2.2E-21 138.3 11.0 164 5-242 3-172 (200)
155 PRK09554 feoB ferrous iron tra 99.7 1.8E-16 4E-21 169.9 15.6 143 6-201 2-156 (772)
156 cd04140 ARHI_like ARHI subfami 99.7 3.7E-16 8.1E-21 138.2 14.9 146 8-201 2-153 (165)
157 cd00154 Rab Rab family. Rab G 99.7 4.2E-16 9.2E-21 135.9 15.0 147 8-201 1-150 (159)
158 cd04112 Rab26 Rab26 subfamily. 99.7 7.2E-17 1.6E-21 146.4 10.5 146 8-201 1-151 (191)
159 cd04127 Rab27A Rab27a subfamil 99.7 2.7E-16 5.9E-21 141.1 14.1 147 6-201 3-165 (180)
160 PRK15467 ethanolamine utilizat 99.7 1.6E-16 3.5E-21 139.5 12.1 141 9-237 3-147 (158)
161 cd03708 GTPBP_III Domain III o 99.7 1.7E-16 3.7E-21 124.6 11.0 85 336-441 2-87 (87)
162 TIGR02528 EutP ethanolamine ut 99.7 1E-16 2.2E-21 138.1 10.5 128 9-201 2-133 (142)
163 cd04155 Arl3 Arl3 subfamily. 99.7 2.2E-16 4.8E-21 140.6 13.0 148 5-201 12-163 (173)
164 cd04119 RJL RJL (RabJ-Like) su 99.7 3.3E-16 7.2E-21 138.4 14.0 145 8-201 1-155 (168)
165 cd01868 Rab11_like Rab11-like. 99.7 1.6E-16 3.4E-21 140.5 11.9 145 8-201 4-153 (165)
166 cd04159 Arl10_like Arl10-like 99.7 3.4E-16 7.5E-21 136.6 13.9 144 10-201 2-149 (159)
167 cd04122 Rab14 Rab14 subfamily. 99.7 1.3E-16 2.9E-21 141.2 11.3 147 8-201 3-152 (166)
168 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.9E-16 4.2E-21 139.1 12.1 145 9-201 1-150 (160)
169 smart00173 RAS Ras subfamily o 99.7 2.7E-16 5.9E-21 138.7 12.7 146 8-201 1-150 (164)
170 cd04121 Rab40 Rab40 subfamily. 99.7 6.4E-16 1.4E-20 139.5 15.3 147 6-201 5-155 (189)
171 PF10662 PduV-EutP: Ethanolami 99.7 1.5E-16 3.3E-21 134.0 10.4 129 8-201 2-134 (143)
172 PRK09518 bifunctional cytidyla 99.7 2.3E-16 5E-21 169.8 14.6 153 6-204 449-612 (712)
173 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 4.9E-16 1.1E-20 138.2 14.1 147 9-201 2-153 (170)
174 cd00877 Ran Ran (Ras-related n 99.7 3.8E-16 8.3E-21 138.4 13.3 141 8-201 1-147 (166)
175 cd04136 Rap_like Rap-like subf 99.7 3.1E-16 6.8E-21 138.1 12.7 143 8-201 2-151 (163)
176 PRK00093 GTP-binding protein D 99.7 5.3E-16 1.2E-20 158.8 16.0 141 8-201 2-150 (435)
177 cd04110 Rab35 Rab35 subfamily. 99.7 6E-16 1.3E-20 141.3 14.6 147 6-201 5-155 (199)
178 cd04161 Arl2l1_Arl13_like Arl2 99.7 4.7E-16 1E-20 137.9 13.3 143 9-198 1-148 (167)
179 cd04142 RRP22 RRP22 subfamily. 99.7 6.5E-16 1.4E-20 140.7 14.5 146 8-201 1-162 (198)
180 PRK00454 engB GTP-binding prot 99.7 7.7E-16 1.7E-20 140.1 14.9 146 7-201 24-182 (196)
181 cd01878 HflX HflX subfamily. 99.7 3E-16 6.5E-21 143.9 12.1 142 6-201 40-193 (204)
182 cd04163 Era Era subfamily. Er 99.7 1.3E-15 2.7E-20 134.0 15.7 148 6-201 2-157 (168)
183 cd04109 Rab28 Rab28 subfamily. 99.7 5.8E-16 1.3E-20 143.2 14.0 145 8-201 1-154 (215)
184 PRK09518 bifunctional cytidyla 99.7 6.7E-16 1.5E-20 166.3 16.4 142 7-201 275-424 (712)
185 cd01893 Miro1 Miro1 subfamily. 99.7 7.4E-16 1.6E-20 136.4 13.9 149 8-201 1-152 (166)
186 cd03695 CysN_NodQ_II CysN_NodQ 99.7 4.8E-16 1E-20 119.6 10.9 80 246-327 1-80 (81)
187 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.2E-16 1.1E-20 137.2 12.6 141 10-197 2-144 (164)
188 PLN03118 Rab family protein; P 99.7 9.3E-16 2E-20 141.4 14.7 149 5-201 12-165 (211)
189 cd04147 Ras_dva Ras-dva subfam 99.7 7.6E-16 1.6E-20 140.5 13.7 145 9-201 1-151 (198)
190 PTZ00369 Ras-like protein; Pro 99.7 7.4E-16 1.6E-20 139.5 13.5 149 5-201 3-155 (189)
191 cd04128 Spg1 Spg1p. Spg1p (se 99.7 2E-15 4.4E-20 135.7 16.0 149 8-201 1-154 (182)
192 cd04175 Rap1 Rap1 subgroup. T 99.7 2.8E-16 6.1E-21 138.8 10.3 143 8-201 2-151 (164)
193 PRK12299 obgE GTPase CgtA; Rev 99.7 9.4E-16 2E-20 149.8 14.9 145 8-201 159-316 (335)
194 cd04118 Rab24 Rab24 subfamily. 99.7 7.6E-16 1.6E-20 139.9 13.0 150 8-201 1-154 (193)
195 cd04126 Rab20 Rab20 subfamily. 99.7 4.7E-16 1E-20 143.5 11.6 111 8-159 1-114 (220)
196 PRK12298 obgE GTPase CgtA; Rev 99.7 8E-16 1.7E-20 153.3 14.1 148 9-201 161-321 (390)
197 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.6E-15 3.4E-20 134.9 14.4 146 7-201 2-157 (170)
198 PF00025 Arf: ADP-ribosylation 99.7 1.5E-15 3.3E-20 135.6 14.2 150 4-201 11-164 (175)
199 cd04123 Rab21 Rab21 subfamily. 99.7 9.1E-16 2E-20 134.7 12.5 145 8-201 1-150 (162)
200 cd03706 mtEFTU_III Domain III 99.7 1.6E-15 3.4E-20 120.5 12.5 86 337-441 3-93 (93)
201 cd04176 Rap2 Rap2 subgroup. T 99.7 1.1E-15 2.3E-20 134.9 12.7 146 8-201 2-151 (163)
202 cd04144 Ras2 Ras2 subfamily. 99.7 5.4E-16 1.2E-20 140.5 11.1 145 9-201 1-151 (190)
203 cd00157 Rho Rho (Ras homology) 99.7 1E-15 2.2E-20 135.9 12.6 154 8-201 1-161 (171)
204 cd01871 Rac1_like Rac1-like su 99.7 1.1E-15 2.5E-20 136.4 12.9 151 7-201 1-163 (174)
205 TIGR03156 GTP_HflX GTP-binding 99.7 1.6E-15 3.4E-20 149.5 15.0 140 7-201 189-340 (351)
206 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.7E-15 5.9E-20 134.0 14.7 147 8-201 2-163 (175)
207 PRK05291 trmE tRNA modificatio 99.6 6.5E-16 1.4E-20 157.5 11.9 137 6-201 214-358 (449)
208 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 1.8E-15 3.9E-20 134.8 13.1 144 7-201 2-152 (172)
209 cd04143 Rhes_like Rhes_like su 99.6 1.9E-15 4.1E-20 142.1 13.8 144 8-201 1-159 (247)
210 TIGR02729 Obg_CgtA Obg family 99.6 2.2E-15 4.8E-20 147.1 14.7 148 7-201 157-317 (329)
211 PLN03071 GTP-binding nuclear p 99.6 2.1E-15 4.6E-20 139.7 13.8 148 5-201 11-160 (219)
212 cd04135 Tc10 TC10 subfamily. 99.6 8E-16 1.7E-20 137.2 10.5 150 8-201 1-162 (174)
213 PRK12296 obgE GTPase CgtA; Rev 99.6 2.7E-15 5.9E-20 152.0 15.1 151 7-201 159-328 (500)
214 cd04139 RalA_RalB RalA/RalB su 99.6 3.4E-15 7.5E-20 131.4 13.9 146 8-201 1-150 (164)
215 cd01875 RhoG RhoG subfamily. 99.6 5.9E-15 1.3E-19 133.8 15.7 149 6-201 2-165 (191)
216 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.6E-15 5.7E-20 132.4 13.1 149 8-201 1-152 (164)
217 KOG0094|consensus 99.6 7.9E-15 1.7E-19 126.7 15.4 162 4-239 19-187 (221)
218 cd04132 Rho4_like Rho4-like su 99.6 3.4E-15 7.4E-20 134.8 13.7 148 8-201 1-155 (187)
219 cd00880 Era_like Era (E. coli 99.6 2.8E-15 6.1E-20 130.5 12.6 144 12-201 1-152 (163)
220 KOG0084|consensus 99.6 2.5E-15 5.3E-20 130.4 11.9 151 7-202 9-161 (205)
221 cd01892 Miro2 Miro2 subfamily. 99.6 2.5E-15 5.5E-20 133.5 12.4 152 5-201 2-154 (169)
222 cd04117 Rab15 Rab15 subfamily. 99.6 2.7E-15 5.9E-20 132.2 12.4 144 9-201 2-150 (161)
223 PLN03110 Rab GTPase; Provision 99.6 2.8E-15 6E-20 138.7 13.0 147 6-201 11-162 (216)
224 COG0486 ThdF Predicted GTPase 99.6 1.6E-15 3.5E-20 148.8 11.9 141 6-201 216-364 (454)
225 smart00174 RHO Rho (Ras homolo 99.6 2.2E-15 4.8E-20 134.3 11.9 148 10-201 1-160 (174)
226 cd00876 Ras Ras family. The R 99.6 1.9E-15 4.1E-20 132.4 11.0 143 9-201 1-149 (160)
227 cd01881 Obg_like The Obg-like 99.6 2.1E-15 4.6E-20 134.4 11.4 144 12-201 1-165 (176)
228 COG0218 Predicted GTPase [Gene 99.6 7.6E-15 1.7E-19 129.2 14.5 148 7-201 24-185 (200)
229 cd04177 RSR1 RSR1 subgroup. R 99.6 3.1E-15 6.7E-20 132.7 12.3 147 8-201 2-152 (168)
230 cd04111 Rab39 Rab39 subfamily. 99.6 2.9E-15 6.3E-20 138.0 12.2 146 7-201 2-154 (211)
231 cd04125 RabA_like RabA-like su 99.6 2.4E-15 5.2E-20 136.1 11.2 147 8-201 1-150 (188)
232 PLN03108 Rab family protein; P 99.6 4.3E-15 9.4E-20 136.8 13.0 150 6-202 5-157 (210)
233 cd04134 Rho3 Rho3 subfamily. 99.6 4.3E-15 9.2E-20 134.5 12.6 150 8-201 1-162 (189)
234 PRK12297 obgE GTPase CgtA; Rev 99.6 5.7E-15 1.2E-19 147.9 14.4 144 8-201 159-315 (424)
235 cd03707 EFTU_III Domain III of 99.6 5.9E-15 1.3E-19 116.5 11.4 83 337-438 3-90 (90)
236 cd04133 Rop_like Rop subfamily 99.6 5E-15 1.1E-19 132.2 11.9 150 8-201 2-161 (176)
237 PRK11058 GTPase HflX; Provisio 99.6 4.1E-15 8.8E-20 149.9 12.3 156 8-237 198-362 (426)
238 cd04137 RheB Rheb (Ras Homolog 99.6 5.4E-15 1.2E-19 132.6 11.8 144 8-201 2-151 (180)
239 cd04146 RERG_RasL11_like RERG/ 99.6 3.1E-15 6.7E-20 132.3 9.9 145 9-201 1-152 (165)
240 cd04130 Wrch_1 Wrch-1 subfamil 99.6 5.8E-15 1.3E-19 131.6 11.7 152 8-201 1-162 (173)
241 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.1E-14 2.5E-19 130.7 13.3 153 4-201 2-168 (182)
242 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.6E-15 2.1E-19 148.1 14.1 116 5-159 201-324 (442)
243 cd01882 BMS1 Bms1. Bms1 is an 99.6 5.8E-14 1.3E-18 130.4 18.2 148 4-201 36-184 (225)
244 smart00176 RAN Ran (Ras-relate 99.6 1.6E-14 3.4E-19 131.5 13.8 136 13-201 1-142 (200)
245 cd01870 RhoA_like RhoA-like su 99.6 1.1E-14 2.4E-19 129.9 12.6 150 8-201 2-163 (175)
246 COG0370 FeoB Fe2+ transport sy 99.6 6.3E-15 1.4E-19 150.6 11.5 139 7-201 3-152 (653)
247 cd01876 YihA_EngB The YihA (En 99.6 3.2E-14 6.8E-19 125.5 14.3 145 10-201 2-159 (170)
248 TIGR00437 feoB ferrous iron tr 99.6 1.1E-14 2.4E-19 152.9 12.7 135 14-201 1-143 (591)
249 cd04131 Rnd Rnd subfamily. Th 99.6 2.1E-14 4.4E-19 128.7 11.6 149 8-201 2-164 (178)
250 cd04148 RGK RGK subfamily. Th 99.6 2.7E-14 5.9E-19 132.4 12.7 146 8-201 1-151 (221)
251 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 4.9E-14 1.1E-18 130.8 13.9 151 6-201 12-176 (232)
252 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1E-13 2.3E-18 128.0 15.2 147 8-201 2-164 (222)
253 KOG0078|consensus 99.5 3.9E-14 8.5E-19 124.8 10.8 149 6-203 11-164 (207)
254 KOG0098|consensus 99.5 2.9E-14 6.2E-19 122.2 9.0 150 6-203 5-158 (216)
255 cd00882 Ras_like_GTPase Ras-li 99.5 5.8E-14 1.3E-18 120.7 11.2 140 12-201 1-148 (157)
256 KOG0394|consensus 99.5 1.1E-13 2.3E-18 118.6 11.7 152 4-204 6-169 (210)
257 cd04105 SR_beta Signal recogni 99.5 1.7E-13 3.8E-18 125.3 13.6 112 9-160 2-124 (203)
258 PF01926 MMR_HSR1: 50S ribosom 99.5 9.5E-14 2.1E-18 115.2 10.8 107 9-154 1-116 (116)
259 PTZ00132 GTP-binding nuclear p 99.5 1.8E-13 4E-18 126.5 13.8 147 3-202 5-157 (215)
260 KOG1423|consensus 99.5 3.9E-13 8.5E-18 124.2 14.2 118 4-159 69-199 (379)
261 KOG0075|consensus 99.5 9.9E-14 2.1E-18 114.1 9.0 149 5-201 18-170 (186)
262 PRK09866 hypothetical protein; 99.5 3.1E-13 6.8E-18 137.7 14.5 106 84-201 229-341 (741)
263 PF00071 Ras: Ras family; Int 99.5 1.7E-13 3.6E-18 120.6 11.1 146 9-201 1-149 (162)
264 cd04129 Rho2 Rho2 subfamily. 99.5 1.2E-13 2.5E-18 124.9 10.1 149 8-201 2-161 (187)
265 cd04103 Centaurin_gamma Centau 99.5 3.8E-13 8.3E-18 118.0 12.7 141 8-201 1-147 (158)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.6E-13 5.6E-18 123.6 11.9 138 8-182 1-153 (196)
267 cd01896 DRG The developmentall 99.5 8.1E-13 1.8E-17 123.3 15.3 82 9-121 2-90 (233)
268 cd04104 p47_IIGP_like p47 (47- 99.5 4.3E-13 9.4E-18 122.2 12.2 166 7-238 1-185 (197)
269 COG2262 HflX GTPases [General 99.5 2.8E-13 6.1E-18 130.8 10.9 154 6-237 191-356 (411)
270 cd01873 RhoBTB RhoBTB subfamil 99.5 7.3E-13 1.6E-17 120.3 12.5 105 83-201 64-184 (195)
271 KOG0087|consensus 99.5 1.6E-13 3.4E-18 120.4 7.6 148 7-203 14-166 (222)
272 KOG0073|consensus 99.5 9.9E-13 2.1E-17 110.5 11.9 149 6-202 15-167 (185)
273 KOG0080|consensus 99.4 7.3E-13 1.6E-17 110.6 10.9 147 6-202 10-163 (209)
274 cd04102 RabL3 RabL3 (Rab-like3 99.4 3.3E-12 7.1E-17 116.3 14.9 116 8-159 1-143 (202)
275 KOG0095|consensus 99.4 1.2E-12 2.7E-17 107.8 10.5 150 1-201 1-157 (213)
276 KOG1489|consensus 99.4 1.2E-12 2.5E-17 121.8 11.3 147 7-201 196-355 (366)
277 KOG0070|consensus 99.4 3.6E-13 7.7E-18 116.3 6.9 149 4-201 14-166 (181)
278 cd04094 selB_III This family r 99.4 4.2E-12 9E-17 101.6 12.3 94 323-438 1-97 (97)
279 KOG0086|consensus 99.4 2.4E-12 5.2E-17 106.6 11.0 149 8-204 10-162 (214)
280 KOG0076|consensus 99.4 6E-13 1.3E-17 112.9 7.6 163 3-202 13-176 (197)
281 PLN00023 GTP-binding protein; 99.4 3.2E-12 7E-17 122.2 13.4 144 5-184 19-190 (334)
282 KOG1532|consensus 99.4 1E-13 2.2E-18 126.0 2.5 194 5-201 17-252 (366)
283 COG3596 Predicted GTPase [Gene 99.4 4.3E-12 9.2E-17 116.4 12.3 167 4-238 36-223 (296)
284 PF08477 Miro: Miro-like prote 99.4 1.1E-12 2.5E-17 109.1 7.6 114 9-156 1-119 (119)
285 KOG1191|consensus 99.4 1E-12 2.2E-17 128.9 8.0 118 5-159 266-403 (531)
286 cd03688 eIF2_gamma_II eIF2_gam 99.4 1.3E-11 2.9E-16 97.7 12.0 88 242-329 2-112 (113)
287 COG1084 Predicted GTPase [Gene 99.3 8E-12 1.7E-16 117.3 12.0 118 7-159 168-294 (346)
288 KOG0093|consensus 99.3 2.4E-12 5.2E-17 105.9 7.3 145 8-201 22-171 (193)
289 KOG0079|consensus 99.3 8.5E-12 1.8E-16 102.8 10.0 144 9-201 10-157 (198)
290 PF09439 SRPRB: Signal recogni 99.3 3E-12 6.4E-17 113.0 7.9 112 7-159 3-126 (181)
291 cd01850 CDC_Septin CDC/Septin. 99.3 4.7E-11 1E-15 114.1 15.8 145 6-183 3-177 (276)
292 COG1100 GTPase SAR1 and relate 99.3 5.5E-11 1.2E-15 110.1 14.8 117 6-159 4-125 (219)
293 PRK13768 GTPase; Provisional 99.3 1.3E-11 2.8E-16 116.6 10.5 115 85-238 97-248 (253)
294 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 3.8E-11 8.2E-16 110.8 13.0 154 9-198 1-162 (232)
295 cd03692 mtIF2_IVc mtIF2_IVc: t 99.3 4.7E-11 1E-15 92.5 11.5 77 248-326 3-82 (84)
296 PF03029 ATP_bind_1: Conserved 99.3 1.6E-12 3.5E-17 121.2 3.3 110 85-201 91-225 (238)
297 COG4917 EutP Ethanolamine util 99.2 3.4E-11 7.3E-16 96.8 8.5 127 8-201 2-134 (148)
298 KOG0090|consensus 99.2 7.6E-11 1.6E-15 103.9 10.6 115 7-160 38-160 (238)
299 KOG0091|consensus 99.2 7.1E-11 1.5E-15 99.1 8.5 149 7-205 8-165 (213)
300 cd01899 Ygr210 Ygr210 subfamil 99.2 4.3E-10 9.3E-15 109.2 15.1 36 85-120 69-111 (318)
301 PTZ00099 rab6; Provisional 99.2 6.3E-11 1.4E-15 105.7 8.5 101 83-201 27-130 (176)
302 KOG0088|consensus 99.2 2.7E-11 5.9E-16 101.0 5.4 148 7-201 13-163 (218)
303 cd01853 Toc34_like Toc34-like 99.2 2E-09 4.2E-14 101.1 18.3 120 5-160 29-164 (249)
304 COG0536 Obg Predicted GTPase [ 99.2 2.2E-10 4.8E-15 108.1 11.6 144 9-201 161-321 (369)
305 KOG0395|consensus 99.2 1.1E-10 2.3E-15 105.7 9.0 148 6-201 2-153 (196)
306 PRK09435 membrane ATPase/prote 99.2 5.1E-10 1.1E-14 108.8 14.0 101 82-201 146-248 (332)
307 KOG0097|consensus 99.2 3.5E-10 7.6E-15 92.5 10.5 143 8-202 12-162 (215)
308 KOG0071|consensus 99.1 3.2E-10 7E-15 92.8 10.1 148 6-202 16-167 (180)
309 COG1163 DRG Predicted GTPase [ 99.1 6.8E-10 1.5E-14 104.0 10.5 84 7-121 63-153 (365)
310 KOG0074|consensus 99.1 6.4E-10 1.4E-14 91.2 8.7 150 5-203 15-169 (185)
311 cd01342 Translation_Factor_II_ 99.1 2.1E-09 4.7E-14 82.4 10.9 80 246-327 1-82 (83)
312 KOG0072|consensus 99.1 3.4E-10 7.3E-15 93.2 6.4 149 6-201 17-167 (182)
313 COG5192 BMS1 GTP-binding prote 99.0 2.5E-09 5.5E-14 106.1 12.9 143 6-197 68-210 (1077)
314 KOG0081|consensus 99.0 1.8E-10 4E-15 96.1 3.5 102 85-203 67-171 (219)
315 PRK09602 translation-associate 99.0 5.1E-09 1.1E-13 104.8 14.5 35 85-119 72-113 (396)
316 TIGR00073 hypB hydrogenase acc 99.0 8.2E-10 1.8E-14 101.4 7.9 94 84-201 102-195 (207)
317 PF03144 GTP_EFTU_D2: Elongati 99.0 2.6E-09 5.5E-14 80.9 9.1 68 260-327 1-74 (74)
318 PF05049 IIGP: Interferon-indu 99.0 1.5E-09 3.3E-14 106.1 9.8 149 6-199 34-202 (376)
319 cd03690 Tet_II Tet_II: This su 99.0 5.2E-09 1.1E-13 81.4 9.3 81 243-328 1-85 (85)
320 TIGR00750 lao LAO/AO transport 98.9 1.2E-08 2.6E-13 99.0 13.7 99 82-202 124-227 (300)
321 PF04548 AIG1: AIG1 family; I 98.9 2.1E-08 4.6E-13 92.3 13.7 138 8-182 1-154 (212)
322 cd04092 mtEFG2_II_like mtEFG2_ 98.9 1.1E-08 2.4E-13 79.2 9.5 76 248-327 3-82 (83)
323 TIGR02836 spore_IV_A stage IV 98.9 1.7E-08 3.7E-13 98.5 12.7 131 7-157 17-192 (492)
324 cd03699 lepA_II lepA_II: This 98.9 2.4E-08 5.1E-13 77.9 10.5 82 246-328 1-86 (86)
325 KOG0410|consensus 98.9 7.4E-09 1.6E-13 96.9 8.6 138 6-201 177-329 (410)
326 cd03689 RF3_II RF3_II: this su 98.9 2.1E-08 4.5E-13 77.9 9.5 69 256-328 12-84 (85)
327 TIGR00991 3a0901s02IAP34 GTP-b 98.9 4.6E-08 1E-12 93.4 13.7 119 5-159 36-167 (313)
328 cd04088 EFG_mtEFG_II EFG_mtEFG 98.8 2.5E-08 5.4E-13 77.3 9.7 77 248-328 3-83 (83)
329 PF00350 Dynamin_N: Dynamin fa 98.8 9.7E-09 2.1E-13 90.8 8.4 66 83-155 99-168 (168)
330 smart00053 DYNc Dynamin, GTPas 98.8 9.2E-09 2E-13 95.6 8.4 68 85-160 125-207 (240)
331 KOG0077|consensus 98.8 3.2E-08 6.9E-13 83.8 10.8 115 5-160 18-136 (193)
332 COG0378 HypB Ni2+-binding GTPa 98.8 7.9E-09 1.7E-13 90.6 7.1 92 85-201 97-189 (202)
333 PF14578 GTP_EFTU_D4: Elongati 98.8 7.6E-08 1.7E-12 72.5 11.2 77 244-326 3-79 (81)
334 KOG4252|consensus 98.8 2E-09 4.2E-14 91.9 2.3 150 7-203 20-171 (246)
335 cd03691 BipA_TypA_II BipA_TypA 98.8 6.7E-08 1.4E-12 75.4 10.4 78 246-327 1-85 (86)
336 KOG3886|consensus 98.8 2E-08 4.3E-13 89.7 8.2 153 8-198 5-164 (295)
337 cd04091 mtEFG1_II_like mtEFG1_ 98.8 6.5E-08 1.4E-12 74.5 9.7 73 250-328 5-81 (81)
338 TIGR00101 ureG urease accessor 98.8 9.9E-08 2.2E-12 86.8 12.3 94 84-201 91-184 (199)
339 KOG0083|consensus 98.8 2.3E-09 5.1E-14 86.9 1.4 102 83-202 45-149 (192)
340 PRK10463 hydrogenase nickel in 98.7 1E-07 2.2E-12 90.4 10.9 26 5-30 102-127 (290)
341 PF03308 ArgK: ArgK protein; 98.7 2.7E-07 5.9E-12 85.1 12.3 98 82-201 119-218 (266)
342 KOG2486|consensus 98.6 1.2E-07 2.7E-12 87.2 8.3 157 6-203 135-306 (320)
343 KOG3883|consensus 98.6 6.1E-07 1.3E-11 74.9 11.4 115 6-159 8-132 (198)
344 PTZ00258 GTP-binding protein; 98.6 1.4E-07 3E-12 93.6 8.7 83 6-119 20-126 (390)
345 COG1703 ArgK Putative periplas 98.6 4.3E-07 9.4E-12 84.9 10.8 100 81-201 140-242 (323)
346 TIGR00993 3a0901s04IAP86 chlor 98.6 7.6E-07 1.7E-11 92.0 13.5 118 7-160 118-251 (763)
347 KOG0393|consensus 98.6 2.2E-07 4.8E-12 82.7 8.3 150 6-201 3-167 (198)
348 KOG1707|consensus 98.6 1.9E-07 4.2E-12 93.9 8.9 118 4-160 6-130 (625)
349 cd01900 YchF YchF subfamily. 98.6 1.3E-07 2.8E-12 89.7 7.2 80 10-120 1-104 (274)
350 PRK09601 GTP-binding protein Y 98.6 2.2E-07 4.8E-12 91.1 8.6 82 8-120 3-108 (364)
351 PF00735 Septin: Septin; Inte 98.5 2.2E-06 4.8E-11 82.0 15.1 142 7-183 4-176 (281)
352 cd03700 eEF2_snRNP_like_II EF2 98.5 1.7E-06 3.7E-11 68.4 10.4 75 249-327 4-92 (93)
353 cd01859 MJ1464 MJ1464. This f 98.5 8.5E-07 1.8E-11 77.5 9.0 89 104-237 8-96 (156)
354 KOG1673|consensus 98.4 1.8E-06 3.9E-11 72.4 9.8 154 6-202 19-175 (205)
355 KOG0448|consensus 98.4 1.2E-06 2.6E-11 89.8 10.1 66 86-159 207-275 (749)
356 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 3.4E-06 7.4E-11 72.3 9.4 80 100-200 3-84 (141)
357 KOG0096|consensus 98.3 2.1E-06 4.6E-11 74.5 7.3 146 6-203 9-159 (216)
358 cd01856 YlqF YlqF. Proteins o 98.3 2.4E-06 5.1E-11 75.9 8.0 87 92-201 2-89 (171)
359 cd04090 eEF2_II_snRNP Loc2 eEF 98.3 1.1E-05 2.3E-10 64.0 10.9 64 248-311 3-80 (94)
360 TIGR01425 SRP54_euk signal rec 98.3 5.1E-06 1.1E-10 83.4 10.7 66 83-159 181-253 (429)
361 KOG1490|consensus 98.3 2.7E-06 5.8E-11 84.4 8.0 155 6-203 167-331 (620)
362 KOG1534|consensus 98.2 1.8E-06 3.9E-11 76.3 6.0 66 85-159 98-178 (273)
363 cd01858 NGP_1 NGP-1. Autoanti 98.2 1.4E-06 3E-11 76.2 5.4 24 6-29 101-124 (157)
364 cd01858 NGP_1 NGP-1. Autoanti 98.2 3.9E-06 8.5E-11 73.3 8.2 80 102-201 2-83 (157)
365 KOG1547|consensus 98.2 3.9E-05 8.4E-10 69.3 12.8 142 6-183 45-218 (336)
366 cd04178 Nucleostemin_like Nucl 98.2 2.3E-06 5E-11 75.8 5.1 56 7-95 117-172 (172)
367 cd01855 YqeH YqeH. YqeH is an 98.2 9.7E-06 2.1E-10 73.3 9.3 103 97-237 23-125 (190)
368 cd01851 GBP Guanylate-binding 98.2 3.9E-05 8.4E-10 71.2 13.4 91 4-120 4-103 (224)
369 TIGR03596 GTPase_YlqF ribosome 98.2 4.4E-06 9.5E-11 80.2 7.2 86 93-201 5-91 (276)
370 PF05783 DLIC: Dynein light in 98.2 2.5E-05 5.4E-10 79.7 12.8 53 143-201 195-252 (472)
371 COG5019 CDC3 Septin family pro 98.1 6E-05 1.3E-09 72.7 14.4 144 6-183 22-196 (373)
372 COG0012 Predicted GTPase, prob 98.1 4.7E-05 1E-09 73.9 13.6 91 7-120 2-109 (372)
373 PF03193 DUF258: Protein of un 98.1 2.3E-06 5E-11 74.2 3.4 23 8-30 36-58 (161)
374 TIGR00157 ribosome small subun 98.1 9.6E-06 2.1E-10 76.3 7.8 80 104-201 32-111 (245)
375 PF00448 SRP54: SRP54-type pro 98.1 8.4E-06 1.8E-10 73.9 7.1 67 83-159 82-154 (196)
376 KOG3905|consensus 98.1 9E-05 2E-09 69.9 13.9 54 142-201 220-278 (473)
377 KOG1486|consensus 98.1 1E-05 2.3E-10 73.4 7.3 84 7-121 62-152 (364)
378 cd01849 YlqF_related_GTPase Yl 98.0 2.3E-05 4.9E-10 68.4 8.5 72 110-201 1-73 (155)
379 cd01849 YlqF_related_GTPase Yl 98.0 6.5E-06 1.4E-10 71.8 5.1 24 6-29 99-122 (155)
380 PRK10416 signal recognition pa 98.0 2.8E-05 6.1E-10 75.8 9.9 25 6-30 113-137 (318)
381 TIGR00064 ftsY signal recognit 98.0 3.9E-05 8.4E-10 73.2 10.6 66 83-159 153-231 (272)
382 PRK11889 flhF flagellar biosyn 98.0 2.5E-05 5.3E-10 77.0 9.3 66 84-159 320-391 (436)
383 PRK12289 GTPase RsgA; Reviewed 98.0 2.1E-05 4.6E-10 77.5 9.0 78 105-201 86-163 (352)
384 cd03115 SRP The signal recogni 98.0 8.6E-05 1.9E-09 65.9 12.0 66 83-159 81-153 (173)
385 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.5E-05 3.2E-10 77.0 7.5 87 92-201 7-94 (287)
386 PRK14722 flhF flagellar biosyn 98.0 5.1E-05 1.1E-09 75.1 10.6 24 7-30 137-160 (374)
387 KOG1954|consensus 98.0 8.4E-05 1.8E-09 71.2 11.6 132 9-159 60-225 (532)
388 cd01855 YqeH YqeH. YqeH is an 97.9 9.5E-06 2.1E-10 73.3 4.7 63 8-95 128-190 (190)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.2E-05 2.5E-10 69.0 4.5 21 9-29 85-105 (141)
390 PRK14974 cell division protein 97.9 7E-05 1.5E-09 73.3 10.4 66 83-159 221-293 (336)
391 cd03112 CobW_like The function 97.9 7.4E-05 1.6E-09 65.3 9.4 22 9-30 2-23 (158)
392 cd03114 ArgK-like The function 97.9 1.9E-05 4.2E-10 68.2 5.4 59 83-156 90-148 (148)
393 PRK00098 GTPase RsgA; Reviewed 97.9 5E-05 1.1E-09 73.6 8.7 79 106-202 78-156 (298)
394 COG3640 CooC CO dehydrogenase 97.9 2.4E-05 5.1E-10 70.9 5.8 66 83-158 132-198 (255)
395 KOG2655|consensus 97.9 0.00016 3.4E-09 70.4 11.7 143 7-183 21-192 (366)
396 PRK00771 signal recognition pa 97.9 0.00014 3E-09 73.8 11.8 64 85-159 176-246 (437)
397 TIGR00487 IF-2 translation ini 97.8 0.00019 4.2E-09 75.6 13.0 182 88-327 390-575 (587)
398 PRK12288 GTPase RsgA; Reviewed 97.8 2.2E-05 4.8E-10 77.4 5.6 22 9-30 207-228 (347)
399 COG1161 Predicted GTPases [Gen 97.8 2.3E-05 5E-10 76.7 5.2 59 4-95 129-187 (322)
400 cd01856 YlqF YlqF. Proteins o 97.8 3E-05 6.6E-10 68.8 5.4 23 7-29 115-137 (171)
401 TIGR00157 ribosome small subun 97.8 2.5E-05 5.5E-10 73.4 4.9 23 8-30 121-143 (245)
402 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.5E-05 7.5E-10 74.4 5.9 58 6-96 120-177 (287)
403 PRK05306 infB translation init 97.8 0.00045 9.6E-09 74.9 14.7 180 90-327 594-777 (787)
404 KOG4423|consensus 97.8 5.4E-06 1.2E-10 71.7 0.0 149 8-203 26-184 (229)
405 TIGR03596 GTPase_YlqF ribosome 97.8 3.4E-05 7.4E-10 74.0 5.4 24 6-29 117-140 (276)
406 PRK12724 flagellar biosynthesi 97.8 0.00014 3.1E-09 72.5 9.9 67 83-159 298-373 (432)
407 CHL00189 infB translation init 97.8 0.00061 1.3E-08 73.2 15.3 182 87-327 546-731 (742)
408 COG0541 Ffh Signal recognition 97.8 0.00025 5.4E-09 70.1 11.2 136 4-159 97-253 (451)
409 KOG1487|consensus 97.7 7.5E-05 1.6E-09 68.3 7.0 83 8-121 60-149 (358)
410 cd01854 YjeQ_engC YjeQ/EngC. 97.7 0.00011 2.4E-09 70.9 8.5 77 106-201 76-152 (287)
411 cd03110 Fer4_NifH_child This p 97.7 0.00046 1E-08 61.6 11.8 67 83-159 91-157 (179)
412 PRK06731 flhF flagellar biosyn 97.7 0.00019 4.2E-09 68.0 9.5 66 84-159 154-225 (270)
413 PRK12289 GTPase RsgA; Reviewed 97.7 3.7E-05 8.1E-10 75.8 4.7 22 9-30 174-195 (352)
414 TIGR00959 ffh signal recogniti 97.7 0.00028 6E-09 71.4 10.6 65 83-158 181-252 (428)
415 PRK10867 signal recognition pa 97.7 0.00046 9.9E-09 69.9 12.0 65 83-158 182-253 (433)
416 TIGR03597 GTPase_YqeH ribosome 97.7 0.00014 2.9E-09 72.5 8.2 95 95-204 50-144 (360)
417 COG1162 Predicted GTPases [Gen 97.7 5.8E-05 1.2E-09 71.6 5.1 22 8-29 165-186 (301)
418 TIGR00092 GTP-binding protein 97.7 0.00012 2.7E-09 72.0 7.6 36 85-120 67-109 (368)
419 KOG0082|consensus 97.6 0.00031 6.7E-09 68.3 10.0 88 69-159 179-276 (354)
420 PRK14721 flhF flagellar biosyn 97.6 7.3E-05 1.6E-09 75.1 5.8 68 82-159 267-340 (420)
421 KOG3887|consensus 97.6 8E-05 1.7E-09 67.4 4.9 153 9-197 29-187 (347)
422 KOG1533|consensus 97.6 0.00015 3.3E-09 65.4 6.6 73 83-159 95-177 (290)
423 PRK12288 GTPase RsgA; Reviewed 97.6 0.00034 7.3E-09 69.1 9.6 79 106-201 118-196 (347)
424 PRK12723 flagellar biosynthesi 97.6 0.00028 6.1E-09 70.4 9.1 67 83-159 253-326 (388)
425 cd02036 MinD Bacterial cell di 97.6 0.001 2.2E-08 59.1 11.9 65 86-159 64-128 (179)
426 PRK12726 flagellar biosynthesi 97.6 0.00012 2.6E-09 72.0 6.2 25 6-30 205-229 (407)
427 cd01854 YjeQ_engC YjeQ/EngC. 97.6 7.8E-05 1.7E-09 71.9 4.9 23 8-30 162-184 (287)
428 TIGR03597 GTPase_YqeH ribosome 97.6 8.3E-05 1.8E-09 74.0 5.2 62 8-97 155-216 (360)
429 COG1419 FlhF Flagellar GTP-bin 97.6 0.00017 3.7E-09 71.0 7.1 128 6-159 202-352 (407)
430 PRK13796 GTPase YqeH; Provisio 97.6 8.2E-05 1.8E-09 74.2 5.1 62 7-96 160-221 (365)
431 KOG0780|consensus 97.6 0.00017 3.7E-09 69.7 6.7 130 6-158 100-253 (483)
432 KOG1491|consensus 97.5 0.00027 5.9E-09 67.3 7.4 88 2-120 15-126 (391)
433 PRK12727 flagellar biosynthesi 97.5 0.0011 2.3E-08 68.1 12.1 23 7-29 350-372 (559)
434 cd01859 MJ1464 MJ1464. This f 97.5 0.00013 2.9E-09 63.5 4.9 23 6-28 100-122 (156)
435 cd03111 CpaE_like This protein 97.5 0.0005 1.1E-08 55.7 7.9 60 86-154 44-106 (106)
436 cd02038 FleN-like FleN is a me 97.4 0.00092 2E-08 57.1 9.0 80 85-179 45-125 (139)
437 PRK01889 GTPase RsgA; Reviewed 97.4 0.00067 1.5E-08 67.4 8.8 76 106-201 110-185 (356)
438 PRK05703 flhF flagellar biosyn 97.4 0.0014 3E-08 66.6 10.8 67 83-159 298-371 (424)
439 cd00066 G-alpha G protein alph 97.3 0.00048 1E-08 67.4 6.9 86 70-158 146-241 (317)
440 COG0532 InfB Translation initi 97.3 0.0011 2.4E-08 67.2 9.4 79 247-327 415-496 (509)
441 smart00275 G_alpha G protein a 97.3 0.00073 1.6E-08 66.8 8.2 87 69-158 168-264 (342)
442 PRK13796 GTPase YqeH; Provisio 97.3 0.00094 2E-08 66.6 9.0 91 97-203 58-149 (365)
443 PF02492 cobW: CobW/HypB/UreG, 97.3 0.00061 1.3E-08 60.8 6.8 67 84-159 84-155 (178)
444 PRK00098 GTPase RsgA; Reviewed 97.3 0.0003 6.6E-09 68.2 4.9 22 8-29 165-186 (298)
445 KOG2485|consensus 97.2 0.00044 9.6E-09 65.3 5.0 67 4-95 140-206 (335)
446 PRK06995 flhF flagellar biosyn 97.2 0.0024 5.1E-08 65.5 10.6 22 8-29 257-278 (484)
447 PRK14723 flhF flagellar biosyn 97.2 0.0019 4.1E-08 69.4 10.2 23 7-29 185-207 (767)
448 KOG0447|consensus 97.2 0.0063 1.4E-07 61.4 12.9 85 70-160 394-494 (980)
449 PRK11537 putative GTP-binding 97.2 0.0026 5.6E-08 62.1 10.1 23 8-30 5-27 (318)
450 COG0523 Putative GTPases (G3E 97.2 0.0064 1.4E-07 59.3 12.6 92 85-195 85-184 (323)
451 COG1162 Predicted GTPases [Gen 97.1 0.0023 5E-08 60.9 9.1 79 107-202 78-156 (301)
452 cd03702 IF2_mtIF2_II This fami 97.1 0.0038 8.1E-08 49.3 8.9 74 248-327 3-78 (95)
453 cd02037 MRP-like MRP (Multiple 97.1 0.0011 2.4E-08 58.6 6.1 67 83-158 66-134 (169)
454 cd02042 ParA ParA and ParB of 97.1 0.0031 6.6E-08 50.7 8.0 35 85-121 40-74 (104)
455 TIGR02475 CobW cobalamin biosy 97.0 0.013 2.9E-07 57.8 13.0 22 9-30 6-27 (341)
456 cd03703 aeIF5B_II aeIF5B_II: T 96.9 0.0095 2.1E-07 48.0 9.4 77 248-326 3-92 (110)
457 KOG4181|consensus 96.9 0.011 2.3E-07 56.7 10.9 22 7-28 188-209 (491)
458 PRK08099 bifunctional DNA-bind 96.9 0.006 1.3E-07 61.5 10.0 28 7-34 219-246 (399)
459 PF09547 Spore_IV_A: Stage IV 96.9 0.037 8E-07 54.9 14.7 25 7-31 17-41 (492)
460 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.006 1.3E-07 47.7 7.9 69 10-121 2-71 (99)
461 COG0552 FtsY Signal recognitio 96.8 0.014 3.1E-07 56.1 11.4 26 5-30 137-162 (340)
462 TIGR03348 VI_IcmF type VI secr 96.7 0.0031 6.7E-08 72.3 7.6 18 10-27 114-131 (1169)
463 TIGR00491 aIF-2 translation in 96.7 0.0085 1.8E-07 63.4 9.5 76 252-328 473-549 (590)
464 KOG2743|consensus 96.6 0.014 3E-07 55.0 9.4 84 83-175 144-237 (391)
465 KOG2484|consensus 96.6 0.0016 3.4E-08 63.6 2.9 27 4-30 249-275 (435)
466 COG3172 NadR Predicted ATPase/ 96.5 0.067 1.5E-06 45.9 11.9 26 8-33 9-34 (187)
467 cd04178 Nucleostemin_like Nucl 96.5 0.0075 1.6E-07 53.4 6.7 42 110-159 1-44 (172)
468 PRK13695 putative NTPase; Prov 96.5 0.0077 1.7E-07 53.4 6.8 23 8-30 1-23 (174)
469 cd03701 IF2_IF5B_II IF2_IF5B_I 96.5 0.019 4.1E-07 45.4 8.2 61 248-310 3-64 (95)
470 KOG2423|consensus 96.4 0.0014 3.1E-08 63.6 1.9 25 4-28 304-328 (572)
471 KOG1424|consensus 96.4 0.0027 5.8E-08 63.9 3.4 25 5-29 312-336 (562)
472 PF09173 eIF2_C: Initiation fa 96.4 0.036 7.8E-07 42.7 8.8 60 351-438 25-88 (88)
473 PF06858 NOG1: Nucleolar GTP-b 96.3 0.01 2.2E-07 41.6 5.2 47 102-156 6-58 (58)
474 PRK04004 translation initiatio 96.3 0.02 4.3E-07 60.8 9.4 74 252-327 475-550 (586)
475 PRK14845 translation initiatio 96.1 0.1 2.2E-06 58.6 14.1 76 252-328 931-1007(1049)
476 PRK10751 molybdopterin-guanine 96.1 0.055 1.2E-06 47.8 9.6 29 1-30 1-29 (173)
477 PF13207 AAA_17: AAA domain; P 95.9 0.0083 1.8E-07 49.5 3.5 23 9-31 1-23 (121)
478 smart00010 small_GTPase Small 95.8 0.019 4E-07 47.3 5.5 20 9-28 2-21 (124)
479 COG1341 Predicted GTPase or GT 95.8 0.023 5.1E-07 56.0 6.9 26 6-31 72-97 (398)
480 KOG3859|consensus 95.8 0.05 1.1E-06 50.7 8.5 22 7-28 42-63 (406)
481 PF13555 AAA_29: P-loop contai 95.8 0.011 2.3E-07 42.6 3.1 23 9-31 25-47 (62)
482 COG3523 IcmF Type VI protein s 95.7 0.014 2.9E-07 65.6 5.4 47 107-159 213-270 (1188)
483 PRK01889 GTPase RsgA; Reviewed 95.7 0.013 2.8E-07 58.4 4.8 23 8-30 196-218 (356)
484 COG1763 MobB Molybdopterin-gua 95.7 0.014 3E-07 50.8 4.3 23 8-30 3-25 (161)
485 PF00503 G-alpha: G-protein al 95.6 0.032 6.9E-07 56.4 7.2 87 69-158 219-316 (389)
486 KOG2484|consensus 95.6 0.044 9.5E-07 53.8 7.5 77 89-175 126-203 (435)
487 PF00437 T2SE: Type II/IV secr 95.5 0.027 5.9E-07 53.7 5.9 24 7-30 127-150 (270)
488 COG0563 Adk Adenylate kinase a 95.4 0.013 2.9E-07 52.1 3.2 25 8-32 1-25 (178)
489 TIGR00235 udk uridine kinase. 95.4 0.018 3.9E-07 52.6 4.1 28 4-31 3-30 (207)
490 PRK08118 topology modulation p 95.3 0.015 3.2E-07 51.3 3.3 24 8-31 2-25 (167)
491 PRK07261 topology modulation p 95.3 0.016 3.4E-07 51.4 3.3 22 9-30 2-23 (171)
492 KOG1144|consensus 95.3 0.17 3.7E-06 53.4 11.0 53 262-314 953-1007(1064)
493 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.5E-07 42.8 2.7 20 10-29 2-21 (69)
494 KOG0781|consensus 95.2 0.059 1.3E-06 54.0 7.2 72 83-159 465-544 (587)
495 PF13671 AAA_33: AAA domain; P 95.2 0.018 4E-07 48.9 3.4 23 10-32 2-24 (143)
496 COG1126 GlnQ ABC-type polar am 95.2 0.015 3.3E-07 52.5 2.8 21 8-28 29-49 (240)
497 cd03116 MobB Molybdenum is an 95.1 0.16 3.6E-06 44.2 9.1 22 8-29 2-23 (159)
498 COG1136 SalX ABC-type antimicr 95.1 0.016 3.4E-07 53.3 2.6 19 9-27 33-51 (226)
499 COG1116 TauB ABC-type nitrate/ 95.0 0.016 3.5E-07 53.5 2.6 20 9-28 31-50 (248)
500 KOG1707|consensus 95.0 0.083 1.8E-06 54.3 7.8 114 7-159 425-540 (625)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-101 Score=734.16 Aligned_cols=427 Identities=63% Similarity=1.031 Sum_probs=416.7
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|...|+++|++++||+|||||||+++|+|++|.++.+.++++++++.+.|+++|.|+|+||++++||+||+|++.++..|
T Consensus 1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
+++.+.++|+|||||.+|.++|+.|+++||++||||||+.+.||+||...+||+||+.+++.+|+.++||++||||.++
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~- 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS- 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
|++++|+++++++..+++.+||++++++|+|+||+.|+|+.+.++.+|||+| ++|+++|+.+.+|.+
T Consensus 160 -wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~G------------pTLleaLd~~~~p~~ 226 (428)
T COG5256 160 -WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKG------------PTLLEALDQLEPPER 226 (428)
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccC------------ChHHHHHhccCCCCC
Confidence 9999999999999999999999988999999999999999999999999986 999999999888988
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
+.++|||++|+++|.+.+.|++..|||++|.|++||+|++.|.+...+|++|++++.+++.|.|||+|+++++++..++|
T Consensus 227 ~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI 306 (428)
T COG5256 227 PLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDI 306 (428)
T ss_pred CCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++|||++++++ ++..+.+|.|+|.++.+|..|.+||.|++|+|+..++|++..|..++|+.+++..+++|.++++|+.+
T Consensus 307 ~~Gdv~~~~~n-~~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~ 385 (428)
T COG5256 307 RRGDVIGHSDN-PPTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAA 385 (428)
T ss_pred CCccEeccCCC-CcccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceE
Confidence 99999999876 66667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
.|.+++.+|+|++++++++.||||+|||.++|||+|+|.++.
T Consensus 386 iv~i~~~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 386 IVKIEPEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred EEEEEecCceEeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 999999999999999999999999999999999999999875
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.9e-91 Score=705.42 Aligned_cols=434 Identities=76% Similarity=1.205 Sum_probs=414.0
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|+.+|+++||+++||+|||||||+++|++.++.++++.++++.+++...|+++|+|+|++|..++|++||+|++.++..|
T Consensus 1 ~~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 67789999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
++.++.++|+|||||++|.++|+.+++.+|++|||||++.|.++.++...+||++|+.++..+|+|++||++||||+.+.
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 99999999999999999999999999999999999999999998888877899999999999999989999999999865
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
+|++++|+++.++++.+++..|+++++++|+|+||++|+|+.+.+..++||+| ++|+++|+++.+|.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g------------~tLl~~l~~i~~p~~ 228 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKR 228 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccch------------HHHHHHHhhcCCCcc
Confidence 68899999999999999999999877899999999999999999889999975 899999999888888
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..++||||+|+++|+++|.|+|++|+|.+|.|++||.|.++|++..++|++|++++.++++|.|||+|++.|++++..++
T Consensus 229 ~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i 308 (447)
T PLN00043 229 PSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDL 308 (447)
T ss_pred ccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++|+||+++...|+..+++|+|+|.||++|.+|.+||++++|||+.+++|+|.+|.+++|+++|+..+++|++|++||.|
T Consensus 309 ~rG~vl~~~~~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a 388 (447)
T PLN00043 309 KRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG 388 (447)
T ss_pred CCccEEccCCCCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEE
Confidence 99999998755577789999999999999999999999999999999999999999999999998888899999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCCCc
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHGN 446 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~~~ 446 (459)
.|+|++++|+|+|+|++|+.+|||+|||++.|||+|+|+++.....
T Consensus 389 ~v~i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 389 FVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEEEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 9999999999999999999999999999999999999999985433
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=9.6e-90 Score=694.97 Aligned_cols=433 Identities=80% Similarity=1.281 Sum_probs=413.4
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|..+|+++||+++||+|||||||+++|++.+|.++++.++++.+++.+.|+++++|+|++|..++|++||+|++.++..|
T Consensus 1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
+++++.++|+|||||.+|.++|+++++.+|++||||||..|++|.++...+||++|+.++..+|+|++||++||||+...
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999999999999999999888877899999999999999999999999996555
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
+|++++|+++.++++.+++.+|+.+++++|+|+||++|+|+.+.+..++||+| ++|+++|+++.+|.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G------------~tL~~~l~~~~~~~~ 228 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKG------------PTLLEALDTLEPPKR 228 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccch------------HHHHHHHhCCCCCCc
Confidence 59999999999999999999999877899999999999999998889999975 899999999888878
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..++|++|+|+++|+++|.|+|++|+|.+|+|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++
T Consensus 229 ~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v 308 (446)
T PTZ00141 229 PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDI 308 (446)
T ss_pred CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++||||++++..|+..+++|+|+|.||+++.+|++||++++||++.+++|+|..|.+++|+++++..+++|++|++|+.+
T Consensus 309 ~rG~vl~~~~~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a 388 (446)
T PTZ00141 309 KRGYVASDSKNDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAA 388 (446)
T ss_pred CCceEEecCCCCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEE
Confidence 99999999765566779999999999999999999999999999999999999999999999998888899999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCCC
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHG 445 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~~ 445 (459)
.|+|++++|+|+|+|++|+.+|||+|||+++|+|+|.|+++....
T Consensus 389 ~v~l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~ 433 (446)
T PTZ00141 389 IVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE 433 (446)
T ss_pred EEEEEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEecCC
Confidence 999999999999999999999999999999999999999998443
No 4
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=5.8e-83 Score=648.06 Aligned_cols=424 Identities=65% Similarity=1.104 Sum_probs=400.4
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|..+|+++||+++||+|||||||+++|++.++.++++.++++.+++...|+++|.|+|++|..++|+++|+|++..+..+
T Consensus 1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
++++..++|||||||++|.+++..++..+|++|||||++++.++ ...|+.+|+.+++.++++++||++||+|+.+
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~- 155 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDSVN- 155 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhccC-
Confidence 99999999999999999999999999999999999999988543 2348999999998899887999999999976
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
|++++++++.++++.+++..++.+..++++|+||++|+|+.+.+..++||+| ++|+++|+++.+|++
T Consensus 156 -~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g------------~~l~~~l~~~~~~~~ 222 (426)
T TIGR00483 156 -YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKG------------KTLLEALDALEPPEK 222 (426)
T ss_pred -ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccc------------hHHHHHHhcCCCCCC
Confidence 6778888999999999998888766789999999999999999999999975 899999999888877
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..++||+|+|+++|+++|.|+|++|+|.+|+|++||.|.++|.+..++|++|++++.++++|.|||+|+++|++++..++
T Consensus 223 ~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i 302 (426)
T TIGR00483 223 PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDI 302 (426)
T ss_pred ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++||||++++. ++..+++|+|+|.||+++.+|++||++++|+|+.+++|+|..|.+++|+++++..+++|++|++|+.+
T Consensus 303 ~rG~vl~~~~~-~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a 381 (426)
T TIGR00483 303 RRGDVCGHPDN-PPKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAA 381 (426)
T ss_pred ccceEEecCCC-CCceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEE
Confidence 99999999765 67789999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecC
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNN 443 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~ 443 (459)
.|+|+|++|+|+|+|++++.+|||+|||+++|||+|+|+++.+
T Consensus 382 ~v~l~~~~pi~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~ 424 (426)
T TIGR00483 382 IVKFKPTKPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDP 424 (426)
T ss_pred EEEEEECCeeEEeecccCCCCccEEEEECCCEEEEEEEEEeee
Confidence 9999999999999999999999999999999999999998864
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=4.8e-83 Score=648.91 Aligned_cols=420 Identities=57% Similarity=0.995 Sum_probs=396.6
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
.+|+++||+++||+|||||||+++|++..+.++++.++++++++.+.|+.++.|+|++|..++|+++|+|++..+..+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCC--CceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT--GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~--g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
+++.++|||||||++|.+++..+++.+|++|+|||+++ +.. +++++|+.++..++++++++++||||+.+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~-------~~~~~~~~~~~~~~~~~iivviNK~Dl~~- 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVM-------PQTREHVFLARTLGINQLIVAINKMDAVN- 153 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCC-------cchHHHHHHHHHcCCCeEEEEEEcccccc-
Confidence 99999999999999999999999999999999999987 432 38999999999999877999999999986
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
|++.+++++.+++..+++.+++.+..++++|+||++|+|+.+.+..++||+| ++|+++|+.+.+|.+
T Consensus 154 -~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g------------~~L~~~l~~~~~~~~ 220 (425)
T PRK12317 154 -YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNG------------PTLLEALDNLKPPEK 220 (425)
T ss_pred -ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccH------------HHHHHHHhcCCCCcc
Confidence 6677888899999999988888766788999999999999999999999975 899999999877777
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..++||+|+|+++|+++|.|+|++|+|.+|+|++||+|.++|++..++|++|++++.+++.|.|||+|++.|++++..++
T Consensus 221 ~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i 300 (425)
T PRK12317 221 PTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDI 300 (425)
T ss_pred ccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++||+|+++.. ++..+++|+|+|.||+++.+|++||++++|+|+.+++|+|..|.+++|+++++..+++|++|++|+.|
T Consensus 301 ~rG~vl~~~~~-~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a 379 (425)
T PRK12317 301 KRGDVCGHPDN-PPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAA 379 (425)
T ss_pred cCccEecCCCC-CCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEE
Confidence 99999998765 66789999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCC
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNH 444 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~ 444 (459)
.|+|++++|+|+++|++++.+|||+|||+++|+|+|+|+++.+.
T Consensus 380 ~v~l~~~~p~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 380 IVKIKPTKPLVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred EEEEEECCeeEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 99999999999999999999999999999999999999998743
No 6
>KOG0458|consensus
Probab=100.00 E-value=2.5e-83 Score=629.40 Aligned_cols=425 Identities=40% Similarity=0.702 Sum_probs=407.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+.+++.+++||+|+|||||+++||+.+|.+..+.+.++.+++...|+++|.|+|++|...+||+||+|++.+...|+..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+.++|+|+|||.+|+++|+.|+.+||+++|||||+.+.||.||...+||+||+.+++.+|+.++||++||||+++ |+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~--Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS--WS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHhhh-hhcCcCCceeeEeecCCCCCCccccccC---CCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 164 EARFEEIKKEVSGYI-KKIGYNPATVAFVPISGWHGDNMLEVSD---KMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l-~~~g~~~~~~~~i~iSa~~g~~i~~~~~---~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
++||++|++.+..+| +.+||...++.|||+|++.|+|+..... ...||+| ++||+.|+++.+|.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~G------------p~LL~~id~~~~p~ 399 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKG------------PTLLSQIDSFKIPE 399 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcC------------ChHHHHHhhccCCC
Confidence 999999999999999 8899998889999999999999988743 4789986 89999999988888
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
+..++||++.|.++++.++.|..++|+|++|.|++||+|+++|+...++|++|.++..+..+|.|||.|.+.|.++.+..
T Consensus 400 ~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~ 479 (603)
T KOG0458|consen 400 RPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNL 479 (603)
T ss_pred CcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhh
Confidence 88999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCE
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDA 399 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~ 399 (459)
++.|++++.....+...+..|.+++.||+...||.+|.+.++|+|+..++|++.++...+++.||+..+..|++|..|+.
T Consensus 480 v~~g~i~~~~~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~ 559 (603)
T KOG0458|consen 480 VQVGDIADSGPQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQS 559 (603)
T ss_pred cccceeeecCCCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCce
Confidence 99999999433446666799999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 400 AIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 400 ~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
|.+++..++|||+|.|.+|+.+|||+||..|.|||+|+|+++.
T Consensus 560 a~vele~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 560 AIVELETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred eeeeccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 9999999999999999999999999999999999999999874
No 7
>KOG0459|consensus
Probab=100.00 E-value=1.4e-81 Score=589.54 Aligned_cols=423 Identities=39% Similarity=0.703 Sum_probs=405.4
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
+|.+.|++++||+++||||+-+++++.++.++.+.++++.+++.+.++.+|+++|.+|...+||++|.|+..+.++|++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+.++++|+|||..|.++|+.++++||.++||++|..|.|+.||+..+||++|..+++.+++.|+|+++||||-+..+|+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCc-eeeEeecCCCCCCcccccc-CCCCCccccccccccCCCChhhHHHhccccCCCCCC
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPA-TVAFVPISGWHGDNMLEVS-DKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP 241 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~-~~~~i~iSa~~g~~i~~~~-~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~ 241 (459)
++||+++.+++..+|+.+||++. +..|+|+|+++|.|+.+.. ..+|||.| +.+++.|+++...++.
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~g------------p~fl~~ld~l~~~~R~ 303 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKG------------PIFLEYLDELPHLERI 303 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccC------------CccceehhccCccccc
Confidence 99999999999999999999864 4679999999999998766 46999976 8899999996667888
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
.+.|++++|.+-|+ ..|+|+.|+|+||++++||.+.++|.+..+.|.+|.....+++.+.|||++.+.|+|++..++.
T Consensus 304 ~~GP~~~pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~ 381 (501)
T KOG0459|consen 304 LNGPIRCPVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDIS 381 (501)
T ss_pred CCCCEEeehhhhcc--ccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhcc
Confidence 99999999999887 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
.|.|||++.+ +..+.+.|.|+|.+++|..-|.+||.++||+|+...+|.| ++.+.+|++||+..++.|+|++.|+.+.
T Consensus 382 ~GfiL~~~~n-~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~i 459 (501)
T KOG0459|consen 382 PGFILCSPNN-PCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCI 459 (501)
T ss_pred CceEEecCCC-ccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEE
Confidence 9999999876 8889999999999999999999999999999999999999 6779999999999999999999999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++|+...|||+|+|.++|++|||.|||+|+|||+|+|+++.
T Consensus 460 arl~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~ 500 (501)
T KOG0459|consen 460 ARLETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVV 500 (501)
T ss_pred EEEecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeec
Confidence 99999999999999999999999999999999999999975
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-79 Score=567.81 Aligned_cols=413 Identities=31% Similarity=0.513 Sum_probs=385.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCC--CcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
.|..+|++.+|++|.|||||+++||+++..+-.+++..+.+.+...|. +.+.|+.+.|-.+.||+.|||||++|++|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 577899999999999999999999999999999999999988864443 568899999999999999999999999999
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+++++|++.|||||+.|.++|..|++-||.+|++|||..|+.+ ||++|..++..+|++|+++++||||+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~-------QTrRHs~I~sLLGIrhvvvAVNKmDLvd-- 153 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLE-------QTRRHSFIASLLGIRHVVVAVNKMDLVD-- 153 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHH-------HhHHHHHHHHHhCCcEEEEEEeeecccc--
Confidence 9999999999999999999999999999999999999999877 9999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP 241 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~ 241 (459)
|++++|++|..+...+.+++|+. ...+||+||+.|+|+..++..||||+| +.||+.|+........
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~~s~~mpWY~G------------ptLLe~LE~v~i~~~~ 219 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLK--DVRFIPISALLGDNVVSKSENMPWYKG------------PTLLEILETVEIADDR 219 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC--cceEEechhccCCcccccccCCCcccC------------ccHHHHHhhccccccc
Confidence 99999999999999999999985 458999999999999999999999986 8999999988777666
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
..+||||||+.+.+..-.-+-+.|+|.+|++++||.|.+.|+++..+|++|..++.++++|.||+.|++.|.. ..+++
T Consensus 220 ~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~d--eidis 297 (431)
T COG2895 220 SAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLAD--EIDIS 297 (431)
T ss_pred cccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEcc--eeecc
Confidence 7788999999999987556778999999999999999999999999999999999999999999999999876 67899
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
|||+|+..+. +|.++..|.|.|+||.. .|+.+|..+.+..++..+.++|..|.+++|.++.+.. .++.|..|+.+.
T Consensus 298 RGd~i~~~~~-~~~~~~~f~A~vvWm~~-~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~ 373 (431)
T COG2895 298 RGDLIVAADA-PPAVADAFDADVVWMDE-EPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGR 373 (431)
T ss_pred cCcEEEccCC-CcchhhhcceeEEEecC-CCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceE
Confidence 9999998765 67789999999999996 6899999999999999999999999999999998765 689999999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEEC--CceEEEEEEEeecCCC
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRDM--RQTVAVGVIKVNNNHG 445 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd~--~~tva~G~V~~v~~~~ 445 (459)
|++.+++|+++++|.+|+.+|+|||.|. +.|+|+|+|.+-.+..
T Consensus 374 v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~~~ 419 (431)
T COG2895 374 VRISFDKPIAFDAYAENRATGSFILIDRLTNGTVGAGMILASLSAN 419 (431)
T ss_pred EEEecCCceeecccccCcccccEEEEEcCCCCceeceeeechhhhc
Confidence 9999999999999999999999999998 5799999999866433
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.8e-77 Score=609.89 Aligned_cols=413 Identities=28% Similarity=0.457 Sum_probs=377.4
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCC--cceeeeeccCchhHHhcCceEEeeeeE
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG--SFKYAWVLDKLKAERERGITIDIALWK 79 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 79 (459)
...++.++|+++||+|||||||+++|++.++.++++.++++.+++...|+. ++.|+|++|..++|++||+|++..+..
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 346889999999999999999999999999999999999999999999984 899999999999999999999999999
Q ss_pred EeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 80 FETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 80 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
++++++.++|||||||++|.+++..++..+|+++||||+..|..+ ||++|+.++..++++++|+++||||+++
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-------qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-------cchHHHHHHHHhCCCceEEEEEeecccc
Confidence 999999999999999999999999999999999999999988654 9999999999999888899999999986
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
|++.+++++.+++..+++.+++. ...+++|+||++|+|+.+.+..++||+| ++|+++|+.+.++.
T Consensus 175 --~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G------------~tLl~~L~~i~~~~ 239 (474)
T PRK05124 175 --YSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSG------------PTLLEVLETVDIQR 239 (474)
T ss_pred --chhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccch------------hhHHHHHhhcCCCC
Confidence 66788889999998888777742 3678999999999999998889999975 89999999887777
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
+..++|+||+|+++++.......+.|+|.+|+|++||+|+++|.+..++|++|++++.+++.|.|||+|+++|++ ..+
T Consensus 240 ~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~ 317 (474)
T PRK05124 240 VVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EID 317 (474)
T ss_pred CCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccc
Confidence 778899999999998764332336799999999999999999999999999999999999999999999999985 578
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCE
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDA 399 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~ 399 (459)
+++|||||+++. ++.++++|+|+|.||+ +.+|++||++++|+|+.+++|+|..|.+++|++|++.. +|++|++|+.
T Consensus 318 i~rG~VL~~~~~-~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~--~~~~l~~g~~ 393 (474)
T PRK05124 318 ISRGDLLVAADE-ALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQR--EAENLPLNGI 393 (474)
T ss_pred cCCccEEECCCC-CCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCccc--CccccCCCCE
Confidence 999999998764 5667999999999998 68899999999999999999999999999999999753 5889999999
Q ss_pred EEEEEEeCCeEEeeecCCCCCcceEEEE--ECCceEEEEEEEeec
Q psy13961 400 AIIVLVPSKPMCVESFSEFPPLGRFAVR--DMRQTVAVGVIKVNN 442 (459)
Q Consensus 400 ~~v~l~l~~~i~~~~~~~~~~~grfilr--d~~~tva~G~V~~v~ 442 (459)
+.|+|++++|+|+|+|++||.+|||+|| +.++|||+|+|+++.
T Consensus 394 a~v~l~~~~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 394 GLVELTFDEPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred EEEEEEECCeeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999999999999996 457999999999876
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.1e-76 Score=596.10 Aligned_cols=402 Identities=31% Similarity=0.520 Sum_probs=371.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCC--cceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG--SFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+||+++||+|||||||+++|++.++.++++.++++.+++...|+. +|.|+|++|..++|++||+|++..+..+++.++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999999999999999999999999999985 799999999999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
+++|+|||||++|.++|..++..+|++|||||+..|..+ ||++|+.++..++++++|+++||||+++ |++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-------qt~~~~~~~~~~~~~~iivviNK~D~~~--~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-------QTRRHSYIASLLGIRHVVLAVNKMDLVD--YDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-------ccHHHHHHHHHcCCCcEEEEEEeccccc--chHH
Confidence 999999999999999999999999999999999988654 9999999999999988999999999986 6678
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCCCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEKP 245 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~~p 245 (459)
+++++.+++..+++.+++ .+++++|+||++|+|+.+.+..++||.| ++|+++|+.+.+|.+..++|
T Consensus 152 ~~~~i~~~~~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g------------~tL~~~L~~~~~~~~~~~~p 217 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGF--RDVTFIPLSALKGDNVVSRSESMPWYSG------------PTLLEILETVEVERDAQDLP 217 (406)
T ss_pred HHHHHHHHHHHHHHHcCC--CCccEEEeecccCCCCcccccCCCccch------------hHHHHHHHhcCCCCCcCCCC
Confidence 888899999888888777 3678999999999999999999999975 89999999987777778899
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
|+|+|+++|+....+..+.|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|||+|+++|++ ..++++|||
T Consensus 218 ~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~v 295 (406)
T TIGR02034 218 LRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDL 295 (406)
T ss_pred cccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccE
Confidence 999999999865433447899999999999999999999999999999999999999999999999985 578999999
Q ss_pred EccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEE
Q psy13961 326 AGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLV 405 (459)
Q Consensus 326 l~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~ 405 (459)
||+++. ++.++++|+|++.|+++ .+|++||++++|+|+.+++|+|..+.+++|++|++.. +++++++|+.+.|+|+
T Consensus 296 l~~~~~-~~~~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~--~~~~l~~~~~~~v~l~ 371 (406)
T TIGR02034 296 LAAADS-APEVADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKG--AAKSLELNEIGRVNLS 371 (406)
T ss_pred EEcCCC-CCCcceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCccc--CCcccCCCCEEEEEEE
Confidence 999865 56679999999999996 6899999999999999999999999999999999754 5899999999999999
Q ss_pred eCCeEEeeecCCCCCcceEEE--EECCceEEEEEE
Q psy13961 406 PSKPMCVESFSEFPPLGRFAV--RDMRQTVAVGVI 438 (459)
Q Consensus 406 l~~~i~~~~~~~~~~~grfil--rd~~~tva~G~V 438 (459)
+++|+|+++|++++.+|||+| |++++|||+|+|
T Consensus 372 ~~~p~~~~~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 372 LDEPIAFDPYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred ECCeeccCcccCCCcceeEEEEECCCCCeEEEEeC
Confidence 999999999999999999999 556899999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=4.9e-73 Score=600.24 Aligned_cols=413 Identities=31% Similarity=0.511 Sum_probs=379.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCC--CcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
.++.++|+++||+|||||||+++|++..+.++.+.++++.+++...|. +++.++|++|..++|+++|+|++.++..++
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 467899999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+.+.+++|+|||||++|.+++..++..+|+++||||+..|..+ |+++|+.++..++++++||++||||+++
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-------~t~e~~~~~~~~~~~~iivvvNK~D~~~-- 171 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-------QTRRHSFIASLLGIRHVVLAVNKMDLVD-- 171 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-------cCHHHHHHHHHhCCCeEEEEEEeccccc--
Confidence 9999999999999999999999999999999999999988554 9999999999999888899999999986
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP 241 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~ 241 (459)
|++++++++.+++..+++.+++ .+++++|+||++|+|+.+.+..++||.| ++|+++|+.+.++.+.
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g------------~tL~~~l~~~~~~~~~ 237 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSARMPWYEG------------PSLLEHLETVEIASDR 237 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCccccccCCCcccH------------hHHHHHHhcCCCCCCc
Confidence 6678888898999888888887 4578999999999999998888999975 8999999998777777
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
.++||+|+|+++|+....+..++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.|||+|+++|++ ..+++
T Consensus 238 ~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~ 315 (632)
T PRK05506 238 NLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDIS 315 (632)
T ss_pred CCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccC
Confidence 8899999999998864322336799999999999999999999999999999999999999999999999985 56899
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
+|+|||+++. ++.++++|+|++.||+++ ++.+||++++|+|+.+++|+|..|.+++|++|++. ++|++|++|+.+.
T Consensus 316 rG~vL~~~~~-~~~~~~~f~a~i~~l~~~-~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~ 391 (632)
T PRK05506 316 RGDMLARADN-RPEVADQFDATVVWMAEE-PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGR 391 (632)
T ss_pred CccEEecCCC-CCcceeEEEEEEEEeccc-ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEE
Confidence 9999999865 566799999999999975 67799999999999999999999999999998874 5899999999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEE--CCceEEEEEEEeecCCC
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRD--MRQTVAVGVIKVNNNHG 445 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd--~~~tva~G~V~~v~~~~ 445 (459)
|+|++++|+|+++|++|+.+|||+||| ++.|||+|+|++..+..
T Consensus 392 v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~~ 437 (632)
T PRK05506 392 CNLSTDAPIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRRA 437 (632)
T ss_pred EEEEECCEEeeeeccccccCceEEEEeccCCceEEEEEECcccccc
Confidence 999999999999999999999999966 78999999999988843
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.1e-71 Score=562.51 Aligned_cols=388 Identities=34% Similarity=0.508 Sum_probs=343.6
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
.+|+++||+++||+|+|||||+++|++.++.+.....++ ...+|..++|+++|+|++..+..|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 478899999999999999999999998877665332111 23589999999999999999999999
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
+++.++|||||||++|.++|+++++.+|++++||||.+|... ||++|+.++..+++|++|+++||||+++
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-------qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQDQVD--- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEecccccC---
Confidence 999999999999999999999999999999999999988543 9999999999999998889999999985
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccccc-----CCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVS-----DKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~-----~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
.++.++.+.+++..+++.+||...+++++|+||++|+|+.... ...+||++ +++|+++|+++.|
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~-----------i~~Ll~~l~~~~~ 280 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDK-----------IYELMDAVDSYIP 280 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhh-----------HHHHHHHHHHhCC
Confidence 2456788888999999999987678999999999998875321 23589962 3789999998754
Q ss_pred -CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEcc
Q psy13961 238 -PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 238 -~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~ 314 (459)
|.+..++||+|+|+++|+++|.|+|++|+|.+|.|++||.|+++|.+ ..++|++|++++.+++.|.|||+|+++|++
T Consensus 281 ~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~ 360 (478)
T PLN03126 281 IPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRG 360 (478)
T ss_pred CCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccC
Confidence 66677899999999999999999999999999999999999999975 578999999999999999999999999999
Q ss_pred CcccCcceeEEEccCCCCCCcccceEEEEEEEecCC-----CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCccccc
Q psy13961 315 VSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHP-----GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEE 389 (459)
Q Consensus 315 ~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~-----~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 389 (459)
++..++++|+||++++. +.++++|+|+|.||+++ .+|.+||++++|+|+.+++|+|..|.++.+ +
T Consensus 361 i~~~di~rG~VL~~~~~--~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~ 430 (478)
T PLN03126 361 IQKADIQRGMVLAKPGS--ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------E 430 (478)
T ss_pred CcHHHcCCccEEecCCC--CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------C
Confidence 98899999999998753 45689999999999985 589999999999999999999999976443 2
Q ss_pred CccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 390 NPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 390 ~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
+|+++++||.+.|+|++++|+|+++ ++||+|||+++|+|+|+|+++.
T Consensus 431 ~~~~l~~gd~a~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 431 ESKMVMPGDRVKMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred CccEeCCCCEEEEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 5789999999999999999999986 5799999999999999999875
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.7e-70 Score=549.79 Aligned_cols=389 Identities=32% Similarity=0.500 Sum_probs=343.6
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
+.+|+++||+++||+|||||||+++|++..+.++.... .. ...+|..++|+++|+|++.....|+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~-~~~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KK-YDEIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cc-cccccCChhhhcCCEeEEccEEEEc
Confidence 45789999999999999999999999988776643211 11 1258999999999999999999999
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+++++++|+|||||.+|.+++.+++..+|++++|||+..|..+ |+++|+.++..+++|++|+++||||+++.
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~-------qt~~~~~~~~~~g~~~iIvvvNK~D~~~~- 143 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTKEHILLAKQVGVPNIVVFLNKEDQVDD- 143 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCEEEEEEEccCCCCH-
Confidence 9999999999999999999999999999999999999987544 99999999999999988899999999862
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCC-----CCCccccccccccCCCChhhHHHhccccC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK-----MPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~-----~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
++.++.+.+++..+|+.+++..+.++++|+||++|+|+.+.+.. .+||++ +++|+++|+++.
T Consensus 144 --~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~-----------~~~ll~~l~~~~ 210 (409)
T CHL00071 144 --EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDK-----------IYNLMDAVDSYI 210 (409)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhh-----------HHHHHHHHHhhC
Confidence 35677788899999999998766789999999999998876543 489963 479999999876
Q ss_pred C-CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEc
Q psy13961 237 P-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVK 313 (459)
Q Consensus 237 ~-~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~ 313 (459)
| |.+..++||+|+|+++|++++.|+|++|+|.+|+|++||.|.+.|. +..++|++|++++.++++|.|||+|+++|+
T Consensus 211 ~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~ 290 (409)
T CHL00071 211 PTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLR 290 (409)
T ss_pred CCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEc
Confidence 5 4466789999999999999999999999999999999999998763 467899999999999999999999999999
Q ss_pred cCcccCcceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccc
Q psy13961 314 NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTE 388 (459)
Q Consensus 314 ~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 388 (459)
+++..++++||||++++. +.++++|+|+|.||++ +.+|.+||++++|+|+.+++|+|..+..+ ++
T Consensus 291 ~i~~~~i~~G~vl~~~~~--~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~~---- 360 (409)
T CHL00071 291 GIQKEDIERGMVLAKPGT--ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----DG---- 360 (409)
T ss_pred CCCHHHcCCeEEEecCCC--CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----CC----
Confidence 988889999999998763 4568999999999998 57899999999999999999999998653 12
Q ss_pred cCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 389 ENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 389 ~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++|+++++|+.+.|+|++++|+|++++ |||+||++++|+|+|+|+++.
T Consensus 361 ~~~~~l~~g~~a~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~ 408 (409)
T CHL00071 361 SKTEMVMPGDRIKMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKIL 408 (409)
T ss_pred CCCcEecCCCEEEEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEec
Confidence 468999999999999999999999885 699999999999999999875
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-69 Score=544.01 Aligned_cols=380 Identities=33% Similarity=0.498 Sum_probs=336.2
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
+.|+++||+++||+|||||||+++|++... ..|++++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~ 72 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET 72 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEcC
Confidence 478899999999999999999999986431 24555554456799999999999999999999998
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
++..++|+|||||++|.+++.+++..+|++++|+|+.+|... |+++|+.++..+++|++++++||||+.+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-------qt~e~l~~~~~~gi~~iivvvNK~Dl~~--- 142 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD--- 142 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-------hHHHHHHHHHHcCCCeEEEEEEecCCcc---
Confidence 899999999999999999999999999999999999987543 9999999999999997777899999975
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~ 241 (459)
.++.++.+.++++.+++.+++...+++++|+||++|.|. +..++||++ +++|+++|++.+| |.+.
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~---~~~~~w~~~-----------~~~Ll~~l~~~~~~p~~~ 208 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEG---DDDEEWEAK-----------ILELMDAVDSYIPEPERA 208 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccC---CCCCccccc-----------HHHHHHHHHhcCCCCCcc
Confidence 235667777889999998888656789999999999986 345889963 4899999998765 5567
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
.++||+|+|+++|+++|.|+|++|+|.+|+|++||+|+++|. +++++|++|++++.++++|.|||+|+++|++++..+
T Consensus 209 ~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~ 288 (396)
T PRK12735 209 IDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKRED 288 (396)
T ss_pred CCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHH
Confidence 789999999999999999999999999999999999999986 478899999999999999999999999999998899
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCcccc
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKAL 394 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l 394 (459)
+++|+|||+++. +.++++|+|+|.+|++ +.+|++||++++|+|+.++.|++... +++++|
T Consensus 289 i~rG~vl~~~~~--~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l 353 (396)
T PRK12735 289 VERGQVLAKPGS--IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-------------EGVEMV 353 (396)
T ss_pred CCcceEEEcCCC--CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEcc-------------CCCcee
Confidence 999999998753 4568999999999998 47899999999999999999998432 257899
Q ss_pred CCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 395 KSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 395 ~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++|+.+.|+|++++|+|++++ |||+|||+++|+|+|+|+++.
T Consensus 354 ~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 354 MPGDNVKMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred CCCCEEEEEEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 999999999999999999985 699999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.1e-69 Score=540.31 Aligned_cols=380 Identities=34% Similarity=0.505 Sum_probs=334.4
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
+.|+++||+++||+|||||||+++|++... +.|++.....+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 468899999999999999999999986421 12333333334799999999999999999999988
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
+++.++|+|||||.+|..++.+++..+|++++|||+..|... |+++|+.++..+++|.+||++||||+++
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~-------qt~~~~~~~~~~g~p~iiVvvNK~D~~~--- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD--- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-------HHHHHHHHHHHcCCCEEEEEEeecCCcc---
Confidence 899999999999999999999999999999999999987543 9999999999999996667899999975
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~ 241 (459)
.++.++.+.++++.+++.+++.+++++++|+||++|.| .+..++||++ +++|+++|++..| |.+.
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~---~~~~~~w~~~-----------~~~ll~~l~~~~~~p~~~ 208 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE---GDDDEEWEKK-----------ILELMDAVDSYIPTPERA 208 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC---CCCccccccc-----------HHHHHHHHHhcCCCCCCC
Confidence 23567777888999999989876778999999999976 3556899974 4799999998664 5567
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
.++||+|+|+++|+++|.|+|++|+|.+|++++||+|.+.|. ++.++|++|++++.++++|.|||+|+++|++++..+
T Consensus 209 ~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~ 288 (396)
T PRK00049 209 IDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKRED 288 (396)
T ss_pred CCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHH
Confidence 789999999999999999999999999999999999999886 678999999999999999999999999999998899
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCcccc
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKAL 394 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l 394 (459)
+++|+|||+++. +.++++|+|+|.+|++ +++|++||++++|+|+.++.|++. + +++|++|
T Consensus 289 i~~G~vl~~~~~--~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l 353 (396)
T PRK00049 289 VERGQVLAKPGS--ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMV 353 (396)
T ss_pred CCcceEEecCCC--CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCccc
Confidence 999999998753 3458999999999998 579999999999999999999983 2 1257899
Q ss_pred CCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 395 KSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 395 ~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++||.+.|+|++++|+|++++ |||+|||+++|+|+|+|+++.
T Consensus 354 ~~g~~a~v~i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 354 MPGDNVEMTVELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred CCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999999999999885 699999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.9e-69 Score=539.06 Aligned_cols=378 Identities=35% Similarity=0.495 Sum_probs=333.0
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
..|+++||+++||+|||||||+++|+.... +.|++.+...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 368899999999999999999999984321 23555555445799999999999999999999988
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
+++.++|+|||||++|+++++++++.+|++++|||+++|... |+++|+.++..+++|++|+++||||+++
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~-------~t~~~~~~~~~~g~~~~IvviNK~D~~~--- 142 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPYLVVFLNKVDLVD--- 142 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCch-------hHHHHHHHHHHcCCCEEEEEEEecCCcc---
Confidence 899999999999999999999999999999999999987544 9999999999999998889999999974
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~ 241 (459)
+++.++.+.+++..+++.+++..++++++|+||++|.+- ..+||.+ +++|+++|.+.+| |.+.
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~-----~~~~~~~-----------i~~Ll~~l~~~lp~~~~~ 206 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG-----DPKWEDA-----------IMELMDAVDEYIPTPERD 206 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC-----CCcchhh-----------HHHHHHHHHHhCCCCCCC
Confidence 235666677899999998888766789999999998542 2479863 3799999998765 5566
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
.++||+|+|+++|+++|.|+|++|+|.+|+|++||.|++.|. +.+++|++|++++.++++|.|||+|+++|++++..+
T Consensus 207 ~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~ 286 (394)
T PRK12736 207 TDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDE 286 (394)
T ss_pred CCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHh
Confidence 789999999999999999999999999999999999999987 678999999999999999999999999999998899
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCcccc
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKAL 394 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l 394 (459)
+++|+|||+++. +.++++|+|++.+|++ +++|.+||++++|+|+.++.|+|... +++++|
T Consensus 287 i~~G~vl~~~~~--~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l 351 (394)
T PRK12736 287 VERGQVLAKPGS--IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELP-------------EGTEMV 351 (394)
T ss_pred CCcceEEecCCC--CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEec-------------CCccee
Confidence 999999998763 3458999999999997 47899999999999999999998432 257899
Q ss_pred CCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 395 KSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 395 ~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++|+.+.|+|++++|+|++++ +||+||++++|+|+|+|+++.
T Consensus 352 ~~g~~a~v~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 352 MPGDNVTITVELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred CCCCEEEEEEEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 999999999999999999885 599999999999999999875
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.1e-68 Score=534.14 Aligned_cols=379 Identities=33% Similarity=0.496 Sum_probs=333.6
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
..+|+++||+++||+|||||||+++|++.. ...|++++...+.+|..++|+++|+|++.....++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~ 71 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE 71 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhH---------------HHhhcccccccccccCCHHHHhcCcceeeEEEEEc
Confidence 347889999999999999999999997532 12455666556789999999999999999999998
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+.++.++|||||||++|.++++++++.+|++++|||+.+|... |+++|+.++..+++|++|+++||||+.+.
T Consensus 72 ~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~-------qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~- 143 (394)
T TIGR00485 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVDD- 143 (394)
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCEEEEEEEecccCCH-
Confidence 8889999999999999999999999999999999999987543 99999999999999977788999999852
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSR 240 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~ 240 (459)
++.++.+.++++.+++.+++...+++++|+||++|.+- ..+||++ +.+|+++|+++.| |.+
T Consensus 144 --~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g-----~~~~~~~-----------~~~ll~~l~~~~~~~~~ 205 (394)
T TIGR00485 144 --EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG-----DAEWEAK-----------ILELMDAVDEYIPTPER 205 (394)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc-----CCchhHh-----------HHHHHHHHHhcCCCCCC
Confidence 34566677889999998888666689999999998642 2479863 3789999998765 556
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEccCccc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 318 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~ 318 (459)
..++||+|+|+++|+++|.|+|++|+|.+|+|++||.|++.|. +.+++|++|++++.++++|.|||+|+++|++++..
T Consensus 206 ~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~ 285 (394)
T TIGR00485 206 ETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKRE 285 (394)
T ss_pred CCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHH
Confidence 6789999999999999999999999999999999999999884 57899999999999999999999999999998888
Q ss_pred CcceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccc
Q psy13961 319 ELRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKA 393 (459)
Q Consensus 319 ~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 393 (459)
++++|+|||+++ ++.++++|+|+|.||++ +.+|++||++++|+|+.++.|++..+ ++|++
T Consensus 286 ~i~rG~vl~~~~--~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~ 350 (394)
T TIGR00485 286 EIERGMVLAKPG--SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEM 350 (394)
T ss_pred HCCccEEEecCC--CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcce
Confidence 999999999874 34558999999999998 47899999999999999999999743 25789
Q ss_pred cCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 394 LKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 394 l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
|++|+.+.|+|++++|+|++++ +||+||++++|+|+|+|+++.
T Consensus 351 l~~g~~a~v~~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 351 VMPGDNVKMTVELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred eCCCCEEEEEEEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 9999999999999999999985 599999999999999999875
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.2e-67 Score=529.73 Aligned_cols=376 Identities=34% Similarity=0.483 Sum_probs=324.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.|+++||+++||+|||||||+++|+... .+.|+........+|..++|+++|+|++..+..|+++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~ 122 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA 122 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC
Confidence 6889999999999999999999996321 1123332111126899999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
+++++|+|||||++|++++.+++..+|+++||||+.+|..+ |+++|+.++..+++|++|+++||||+++.
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~-------qt~e~l~~~~~~gip~iIvviNKiDlv~~--- 192 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-------QTKEHILLARQVGVPSLVVFLNKVDVVDD--- 192 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCch-------hHHHHHHHHHHcCCCeEEEEEEeeccCCH---
Confidence 99999999999999999999999999999999999987544 99999999999999987888999999852
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCC---CCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CC
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGW---HGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PS 239 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~---~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~ 239 (459)
++.++.+.++++++++.+++..++++++|+|++ +|+|.. ..|. .+++|+++|++.+| |.
T Consensus 193 ~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~-----~~~~------------~i~~Ll~~l~~~lp~p~ 255 (447)
T PLN03127 193 EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE-----IGKN------------AILKLMDAVDEYIPEPV 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc-----cccc------------hHHHHHHHHHHhCCCCC
Confidence 345666667888888888886667899999987 444431 1121 34899999998765 55
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC----CeEEEEEEEEeccccceeEcCCCeEEEEEccC
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA----NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNV 315 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~----~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~ 315 (459)
+..++||+|+|+++|+++|.|+|++|+|.+|.|++||.|++.|. +.+++|++|++++.++++|.|||+|+++|+++
T Consensus 256 r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i 335 (447)
T PLN03127 256 RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGL 335 (447)
T ss_pred cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCC
Confidence 67789999999999999999999999999999999999999864 46899999999999999999999999999999
Q ss_pred cccCcceeEEEccCCCCCCcccceEEEEEEEecCC-----CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccC
Q psy13961 316 SVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHP-----GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390 (459)
Q Consensus 316 ~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~-----~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 390 (459)
+..++++|||||++. .+.++++|+|+|.+|+++ .+|.+||++++|+|+.+++|++... ++
T Consensus 336 ~~~~i~rG~Vl~~~~--~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-------------~~ 400 (447)
T PLN03127 336 KREDVQRGQVICKPG--SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-------------EG 400 (447)
T ss_pred CHHHCCCccEEecCC--CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEec-------------cC
Confidence 889999999999874 356799999999999984 7899999999999999999999532 25
Q ss_pred ccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 391 PKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 391 ~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
|+++++||.+.|+|++++|+|++++ |||+||++++|+|+|+|++|.
T Consensus 401 ~~~l~~gd~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 401 VKMVMPGDNVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred ccccCCCCEEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 7899999999999999999999874 699999999999999999874
No 19
>KOG0460|consensus
Probab=100.00 E-value=5.8e-66 Score=474.50 Aligned_cols=383 Identities=34% Similarity=0.516 Sum_probs=331.1
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
.+||+.||+.+||+|+|||||..+++.-. .+.|...+..-.-.|+.++|+.|||||...+..+++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkil---------------a~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHH---------------HhccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 37899999999999999999999986322 112222222222368899999999999999999999
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
..+.+.-+|||||.||+++|+.|+.+.|++||||.|++|.++ ||+||+.++++.|+++++|++||.|++++
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MP-------QTrEHlLLArQVGV~~ivvfiNKvD~V~d-- 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHLLLARQVGVKHIVVFINKVDLVDD-- 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCc-------chHHHHHHHHHcCCceEEEEEecccccCC--
Confidence 999999999999999999999999999999999999999776 99999999999999999999999999952
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~ 241 (459)
++.++-+.-+++++|..+||+.+++|+|.-||+..-.-.++ +. |-.....|+++++++.| |.+.
T Consensus 186 -~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~p------------ei--g~~aI~kLldavDsyip~P~R~ 250 (449)
T KOG0460|consen 186 -PEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQP------------EI--GLEAIEKLLDAVDSYIPTPERD 250 (449)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCc------------cc--cHHHHHHHHHHHhccCCCcccc
Confidence 47777778899999999999999999999887643100000 00 00123789999999766 7788
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
.++||.|+|.++|.++|.|+|++||+++|+|++||++.+...+ .+..|..|+++++.+++|.|||++++.|+|++.++
T Consensus 251 ~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~d 330 (449)
T KOG0460|consen 251 LDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKRED 330 (449)
T ss_pred cCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHH
Confidence 9999999999999999999999999999999999999987655 57789999999999999999999999999999999
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCcccc
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKAL 394 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l 394 (459)
++||||++.|.. ..+.++|+|++++|.. .+|+..+|++.+|+.|+.+.+++.... ..+.+
T Consensus 331 vkRGmvl~~pGs--vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mv 395 (449)
T KOG0460|consen 331 VKRGMVLAKPGS--VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMV 395 (449)
T ss_pred HhcccEEecCCc--ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcc
Confidence 999999998875 5679999999999974 368999999999999999999987552 14789
Q ss_pred CCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCCC
Q psy13961 395 KSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHG 445 (459)
Q Consensus 395 ~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~~ 445 (459)
.+||.+.+++.|-+|+++|+.. ||.||++++|||.|+|+++.+-+
T Consensus 396 MPGe~~~~~~~Li~pm~le~Gq------rFtiReGg~TvgtGvvt~~l~lt 440 (449)
T KOG0460|consen 396 MPGENVKVEVTLIRPMPLEKGQ------RFTLREGGRTVGTGVVTDTLPLT 440 (449)
T ss_pred cCCCCeEEEEEEecccccCCCc------eeeEccCCeeeeeeeEeeeeecc
Confidence 9999999999999999999876 99999999999999999988643
No 20
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-64 Score=454.39 Aligned_cols=377 Identities=34% Similarity=0.509 Sum_probs=326.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.|++.||+.+||+|+|||||..+++..+. ..|...+..-.-.|..++|++||+||..++..+++.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~ 73 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA 73 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEEecC
Confidence 57899999999999999999999974321 112222221223678999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.+..+|||||.||++||+.++.++|++||||+|++|.++ ||+||+.++++.|+|++++++||.|+++ +
T Consensus 74 ~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmP-------qTrEHiLlarqvGvp~ivvflnK~Dmvd---d 143 (394)
T COG0050 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---D 143 (394)
T ss_pred CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCC-------cchhhhhhhhhcCCcEEEEEEecccccC---c
Confidence 99999999999999999999999999999999999999766 9999999999999999999999999997 3
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCCC
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPT 242 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~~ 242 (459)
++.++.+..+++++|..++|..++.|++--||+..-.- ..+|.+ ...+|+++++++.| |.+..
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~-----~~~~~~-----------~i~eLm~avd~yip~Per~~ 207 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEG-----DAKWEA-----------KIEELMDAVDSYIPTPERDI 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcC-----CcchHH-----------HHHHHHHHHHhcCCCCCCcc
Confidence 57788888999999999999888899998887653111 112543 23789999999876 55778
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
++||+|+|.++|++.|.|+|++|||++|+|++|+.+.+.... ++..+.+++++++..+++.|||+|++.|+++...++
T Consensus 208 dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~v 287 (394)
T COG0050 208 DKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDV 287 (394)
T ss_pred cccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccce
Confidence 999999999999999999999999999999999999886544 577899999999999999999999999999999999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccC
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALK 395 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~ 395 (459)
.||+||+.|.. ..+..+|+|++++|.. -+|+-.||+|.+|+.+..++..+... +....+.
T Consensus 288 eRGqvLakpgs--i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~-------------eg~emvm 352 (394)
T COG0050 288 ERGQVLAKPGS--IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLP-------------EGVEMVM 352 (394)
T ss_pred ecceEeecCCc--ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEecc-------------CCcceec
Confidence 99999998764 4569999999999974 26899999999999999999865432 1357899
Q ss_pred CCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 396 SGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 396 ~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
+||.+.+.+.|.+|+++|+.. ||.+|++|+|+|.|.|.++.
T Consensus 353 pgdnv~~~veLi~pia~e~G~------rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 353 PGDNVKMVVELIHPIAMEEGL------RFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred CCCceEEEEEEeeeeecCCCC------EEEEEeCCeeeeeeEEeeec
Confidence 999999999999999999876 99999999999999999875
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.7e-59 Score=470.67 Aligned_cols=344 Identities=25% Similarity=0.380 Sum_probs=292.5
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 82 (459)
..++++|+++||+|||||||+++|+.. .+|.+++|++||+|++++|..+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~----------------------------~~~r~~~E~~rGiTi~lGfa~~~~~ 82 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGV----------------------------KTVRFKREKVRNITIKLGYANAKIY 82 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCC----------------------------CcccchhhHHhCCchhccccccccc
Confidence 467899999999999999999999621 267788999999999998875521
Q ss_pred --------------C------------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCC-ceeccccC
Q psy13961 83 --------------S------------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG-EFEAGISK 129 (459)
Q Consensus 83 --------------~------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g-~~~~~~~~ 129 (459)
. .+.++|+|||||++|.++|+++++.+|+++|||||+++ ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~------ 156 (460)
T PTZ00327 83 KCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQ------ 156 (460)
T ss_pred cCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccc------
Confidence 0 24799999999999999999999999999999999875 22
Q ss_pred CCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCC
Q psy13961 130 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMP 209 (459)
Q Consensus 130 ~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~ 209 (459)
+||++|+.++..++++++|+|+||||+++. +++++..++++.+++... ...++++|+||++|+|+
T Consensus 157 -~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~----~~~~~~~~ei~~~l~~~~--~~~~~iipVSA~~G~nI-------- 221 (460)
T PTZ00327 157 -PQTSEHLAAVEIMKLKHIIILQNKIDLVKE----AQAQDQYEEIRNFVKGTI--ADNAPIIPISAQLKYNI-------- 221 (460)
T ss_pred -hhhHHHHHHHHHcCCCcEEEEEecccccCH----HHHHHHHHHHHHHHHhhc--cCCCeEEEeeCCCCCCH--------
Confidence 399999999999999989999999999863 344555556666655432 24678999999999999
Q ss_pred CccccccccccCCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEE
Q psy13961 210 WFKGWAIERKEGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTF 280 (459)
Q Consensus 210 w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~ 280 (459)
+.|+++|.+.+| |.+..++|++|+|+++|.+.+ .|+|++|+|.+|+|++||+|.+
T Consensus 222 ----------------~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i 285 (460)
T PTZ00327 222 ----------------DVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEI 285 (460)
T ss_pred ----------------HHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEE
Confidence 899999996554 556778999999999998864 7999999999999999999999
Q ss_pred ecCC-------------eEEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEE
Q psy13961 281 APAN-------------LTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQV 344 (459)
Q Consensus 281 ~p~~-------------~~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i 344 (459)
.|++ ..++|++|++++.++++|.|||+|+++|+ ++...++.+||||+++.. ++..+++|+|++
T Consensus 286 ~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~-~~~~~~~~~a~v 364 (460)
T PTZ00327 286 RPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK-LPEVYAEIEIQY 364 (460)
T ss_pred ccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC-CCceeEEEEEEE
Confidence 9975 35799999999999999999999999987 677789999999998764 455678999999
Q ss_pred EEecCC--------------CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeE
Q psy13961 345 IVLNHP--------------GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410 (459)
Q Consensus 345 ~~l~~~--------------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i 410 (459)
.||+++ .+|++||++++|+++.++.|+|..+.. +. .++|+|++|+
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~--------------------~~-~~~l~l~~P~ 423 (460)
T PTZ00327 365 YLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKD--------------------DG-IAKLELTTPV 423 (460)
T ss_pred EEecccccccccccccccCCcccCCCCEEEEEecccEEEEEEEEeCC--------------------Ce-EEEEEECccE
Confidence 999873 789999999999999999999998731 11 7789999999
Q ss_pred EeeecCCCCCcceEEEEEC----CceEEEEEEEe
Q psy13961 411 CVESFSEFPPLGRFAVRDM----RQTVAVGVIKV 440 (459)
Q Consensus 411 ~~~~~~~~~~~grfilrd~----~~tva~G~V~~ 440 (459)
|+...+ ||+||+. .+|+|+|.|.+
T Consensus 424 ~~~~gd------r~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 424 CTSVGE------KIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred eccCCC------EEEEEeccCCCcEEEEEEEEcC
Confidence 998765 9999964 37999999985
No 22
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=3.6e-58 Score=429.04 Aligned_cols=361 Identities=34% Similarity=0.563 Sum_probs=313.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 82 (459)
..++++|+++||+|+|||||++.|+ +|..+ +|+|..+ .++|..++|.++|.|.++++.-+.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~D-------------DG~G~tR--~~ldv~kHEverGlsa~iS~~v~Gf~ 176 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--TGRLD-------------DGDGATR--SYLDVQKHEVERGLSADISLRVYGFD 176 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--ecCCC-------------CCCcchh--hhhhhhhHHHhhccccceeEEEEEec
Confidence 4578999999999999999999996 34443 4555443 3478889999999999888765432
Q ss_pred ----------------------CCEEEEEEeCCCccchHhHHHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHH
Q psy13961 83 ----------------------SKFYVTIIDAPGHRDFIKNMITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHAL 138 (459)
Q Consensus 83 ----------------------~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~ 138 (459)
.++.+.|+||-||+.|++++++|+ ++.|+.+|+|.|++|+.. .|+||+.
T Consensus 177 dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-------~tkEHLg 249 (527)
T COG5258 177 DGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-------MTKEHLG 249 (527)
T ss_pred CCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-------hhhHhhh
Confidence 347899999999999999999998 569999999999999765 8999999
Q ss_pred HHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC--------------------ceeeEeecCCCCC
Q psy13961 139 LAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP--------------------ATVAFVPISGWHG 198 (459)
Q Consensus 139 ~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~--------------------~~~~~i~iSa~~g 198 (459)
++.++++| +||++||+|+.+ .+++..+.+++..+|+..+-.| .-+|++.+|+.+|
T Consensus 250 i~~a~~lP-viVvvTK~D~~~----ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg 324 (527)
T COG5258 250 IALAMELP-VIVVVTKIDMVP----DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG 324 (527)
T ss_pred hhhhhcCC-EEEEEEecccCc----HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC
Confidence 99999999 899999999986 4889999999998887654321 1257778888888
Q ss_pred CccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC--CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCC
Q psy13961 199 DNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR--PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM 276 (459)
Q Consensus 199 ~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~--~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd 276 (459)
+|+ +||+.+..++|+.+ ..+.||.|+|+++|.+.|+|+|+.|.|.+|.|+.||
T Consensus 325 ~Gl-------------------------dlL~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd 379 (527)
T COG5258 325 EGL-------------------------DLLDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGD 379 (527)
T ss_pred ccH-------------------------HHHHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCC
Confidence 776 67777777777663 456899999999999999999999999999999999
Q ss_pred eEEEecCC----eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCCCC
Q psy13961 277 LVTFAPAN----LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352 (459)
Q Consensus 277 ~v~~~p~~----~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~ 352 (459)
+++++|.. ..++|+||++|+..+++|.||++++++|++++.+++++||||+.+ .+|++.++|+|++++|.||+.
T Consensus 380 ~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~--~~pkaVref~AeV~vl~HPT~ 457 (527)
T COG5258 380 TVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG--ADPKAVREFDAEVLVLRHPTT 457 (527)
T ss_pred EEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC--CCchhhheecceEEEEeCCcE
Confidence 99999965 688999999999999999999999999999999999999999976 378899999999999999999
Q ss_pred CCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeC-CeEEeeecCCCCCcceEEEEECCc
Q psy13961 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPS-KPMCVESFSEFPPLGRFAVRDMRQ 431 (459)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~-~~i~~~~~~~~~~~grfilrd~~~ 431 (459)
|+.||.+++|+-|.+..+++..+ +..+|++||.+.+++++. +|-.++..+ +|+||++.
T Consensus 458 I~aGye~v~H~etI~e~~~f~~i--------------d~~~L~~GD~g~vr~~fkyrP~~v~eGQ------~fvFReGr- 516 (527)
T COG5258 458 IRAGYEPVFHYETIREAVYFEEI--------------DKGFLMPGDRGVVRMRFKYRPHHVEEGQ------KFVFREGR- 516 (527)
T ss_pred EecCceeeeEeeEeeheeEEEEc--------------ccccccCCCcceEEEEEEeCchhhccCc------EEEEecCC-
Confidence 99999999999999999999887 358999999999999976 999988754 99999987
Q ss_pred eEEEEEEEee
Q psy13961 432 TVAVGVIKVN 441 (459)
Q Consensus 432 tva~G~V~~v 441 (459)
|.|+|.|+.+
T Consensus 517 skgvG~v~~~ 526 (527)
T COG5258 517 SKGVGRVIRV 526 (527)
T ss_pred CccceEEecc
Confidence 8999999875
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.1e-57 Score=476.12 Aligned_cols=346 Identities=24% Similarity=0.409 Sum_probs=302.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CCEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKFYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~~ 87 (459)
.|+++||+|+|||||+++|+. ..+|..++|+++|+|++..+..+.. ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg----------------------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG----------------------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC----------------------------CCCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 589999999999999999952 1167788899999999999888865 45789
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
+|||||||++|.++|..++..+|++++|||+++|..+ ||++|+.++..+++|++|||+||+|+++ ++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~-------qT~ehl~il~~lgi~~iIVVlNKiDlv~----~~~~ 122 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMA-------QTREHLAILQLTGNPMLTVALTKADRVD----EARI 122 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEECCccCC----HHHH
Confidence 9999999999999999999999999999999988654 9999999999999998789999999986 3567
Q ss_pred HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCCCCee
Q psy13961 168 EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEKPLR 247 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~~p~~ 247 (459)
+.+.+++..+++..++ ...+++|+||++|+|+ +.|+++|.++.++.+..++||+
T Consensus 123 ~~v~~ei~~~l~~~~~--~~~~ii~VSA~tG~gI------------------------~~L~~~L~~~~~~~~~~~~~~r 176 (614)
T PRK10512 123 AEVRRQVKAVLREYGF--AEAKLFVTAATEGRGI------------------------DALREHLLQLPEREHAAQHRFR 176 (614)
T ss_pred HHHHHHHHHHHHhcCC--CCCcEEEEeCCCCCCC------------------------HHHHHHHHHhhccccCcCCCce
Confidence 7778888888877666 3468999999999999 8899999988777666789999
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEcc-CcccCcceeEEE
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKN-VSVKELRRGFVA 326 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~-~~~~~i~~G~vl 326 (459)
|+|+++|.++|.|+|++|+|.+|+|++||+|.+.|.+..++|++|++++.++++|.|||+|+++|++ ++..++++||+|
T Consensus 177 l~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl 256 (614)
T PRK10512 177 LAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWL 256 (614)
T ss_pred EEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 888899999999
Q ss_pred ccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEe
Q psy13961 327 GDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVP 406 (459)
Q Consensus 327 ~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l 406 (459)
+++. ++.++..+ +.++....++++|+++.+|+|+.++.|+|..+ +.+.++|+|
T Consensus 257 ~~~~--~~~~~~~~---~~~l~~~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l 309 (614)
T PRK10512 257 LADA--PPEPFTRV---IVELQTHTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVL 309 (614)
T ss_pred eCCC--CCccceeE---EEEEcCCccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEE
Confidence 9763 44455555 44556667899999999999999999999876 125799999
Q ss_pred CCeEEeeecCCCCCcceEEEEEC--CceEEEEEEEeecCCCcc-cCCee
Q psy13961 407 SKPMCVESFSEFPPLGRFAVRDM--RQTVAVGVIKVNNNHGNK-YLPTY 452 (459)
Q Consensus 407 ~~~i~~~~~~~~~~~grfilrd~--~~tva~G~V~~v~~~~~~-~~~~~ 452 (459)
++|+++...+ ||+||+. .+|+|+|.|+...+...+ +.+++
T Consensus 310 ~~p~~~~~gd------r~ilr~~s~~~tigGg~Vld~~~~~~~~~~~~~ 352 (614)
T PRK10512 310 DTPLWLADND------RLVLRDISARNTLAGARVVMLNPPRRGKRKPEY 352 (614)
T ss_pred CCcccccCCC------EEEEEeCCCCEEEEEEEEcccCCcccccCCHHH
Confidence 9999987654 9999994 589999999998876665 44444
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.9e-55 Score=442.06 Aligned_cols=343 Identities=29% Similarity=0.423 Sum_probs=287.3
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
++++++||+++||+|||||||+++|.. ..+|..++|++||+|+++++..+++
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 477899999999999999999999941 2378899999999999988654332
Q ss_pred C--------------------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHH
Q psy13961 83 S--------------------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 136 (459)
Q Consensus 83 ~--------------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~ 136 (459)
. .+.++|+|||||++|..+++.++..+|++++|+|++.+.. ..++.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~ 130 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEH 130 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHH
Confidence 1 2689999999999999999999999999999999997641 1389999
Q ss_pred HHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCcccccc
Q psy13961 137 ALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAI 216 (459)
Q Consensus 137 ~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~ 216 (459)
+..+..++++++++|+||+|+.+.+ ...+..+++..+++... ...++++++||++|+|+
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI--------------- 189 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTV--AENAPIIPVSALHKVNI--------------- 189 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCH---------------
Confidence 9999889987789999999998632 22223344444444321 23578999999999999
Q ss_pred ccccCCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEEecCCe--
Q psy13961 217 ERKEGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTFAPANL-- 285 (459)
Q Consensus 217 ~~~~~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~~p~~~-- 285 (459)
++|++.|.+.++ +.+..++|++|+|+++|.+.+ .|+|++|+|.+|+|++||.|.++|++.
T Consensus 190 ---------~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~ 260 (411)
T PRK04000 190 ---------DALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVE 260 (411)
T ss_pred ---------HHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCccee
Confidence 889999988654 555678999999999998865 467999999999999999999999863
Q ss_pred ----------EEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecC---
Q psy13961 286 ----------TTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH--- 349 (459)
Q Consensus 286 ----------~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~--- 349 (459)
.++|++|++++.++++|.|||+|+++|+ +++..++++|+|||+++. ++..+++|+|++.||++
T Consensus 261 ~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~-~~~~~~~f~a~v~~l~~~~~ 339 (411)
T PRK04000 261 EGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGT-LPPVWESLTIEVHLLERVVG 339 (411)
T ss_pred cccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCC-CCCceEEEEEEEEEEEhhcC
Confidence 5799999999999999999999999986 677788999999999865 55678999999999987
Q ss_pred ------CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcce
Q psy13961 350 ------PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGR 423 (459)
Q Consensus 350 ------~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~gr 423 (459)
+.+|.+||++++|+++.+++|+|..+. ++ .++|+|++|+|+.+.+ |
T Consensus 340 ~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g~------r 391 (411)
T PRK04000 340 TKEELKVEPIKTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEGD------R 391 (411)
T ss_pred ccccccCCCCCCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCCC------E
Confidence 789999999999999999999999872 12 5777899999997765 9
Q ss_pred EEE--EECC--ceEEEEEE
Q psy13961 424 FAV--RDMR--QTVAVGVI 438 (459)
Q Consensus 424 fil--rd~~--~tva~G~V 438 (459)
|+| |+++ +++|.|.|
T Consensus 392 ~~~~~~~~~~~~~~~~~~~ 410 (411)
T PRK04000 392 VAISRRVGGRWRLIGYGII 410 (411)
T ss_pred EEEEEecCCcEEEEEEEEe
Confidence 999 6777 89999987
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=4.4e-55 Score=439.92 Aligned_cols=342 Identities=27% Similarity=0.415 Sum_probs=285.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 81 (459)
+++++||+++||+|||||||+++|.. ..+|..++|++||+|+++++..++
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~----------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~ 52 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTG----------------------------VWTDTHSEELKRGISIRLGYADAEIY 52 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhC----------------------------eecccCHhHHHcCceeEecccccccc
Confidence 36789999999999999999999942 127888999999999999866543
Q ss_pred ------------e------------CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH
Q psy13961 82 ------------T------------SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 137 (459)
Q Consensus 82 ------------~------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~ 137 (459)
+ ..+.++|+|||||++|.+++.++++.+|+++||||++++.. .+|+++|+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l 126 (406)
T TIGR03680 53 KCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHL 126 (406)
T ss_pred cccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHH
Confidence 1 14689999999999999999999999999999999998741 23999999
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccc
Q psy13961 138 LLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIE 217 (459)
Q Consensus 138 ~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~ 217 (459)
..+..++++++++++||+|+++.++ ..+..+++..+++... ...++++|+||++|+|+
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~~~~----~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi---------------- 184 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVSKEK----ALENYEEIKEFVKGTV--AENAPIIPVSALHNANI---------------- 184 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCCHHH----HHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCCh----------------
Confidence 9999999988999999999986322 2223344444444331 23578999999999999
Q ss_pred cccCCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEEecCC----
Q psy13961 218 RKEGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTFAPAN---- 284 (459)
Q Consensus 218 ~~~~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~~p~~---- 284 (459)
++|+++|.+.+| |.+..++|++|+|+++|.+.+ .|+|++|+|.+|+|++||+|.++|++
T Consensus 185 --------~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~ 256 (406)
T TIGR03680 185 --------DALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEK 256 (406)
T ss_pred --------HHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccc
Confidence 889999988544 556678999999999998765 57799999999999999999999985
Q ss_pred --------eEEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecC----
Q psy13961 285 --------LTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH---- 349 (459)
Q Consensus 285 --------~~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~---- 349 (459)
..++|++|++++.++++|.|||+|+++|+ +++..++++||||++++. +|..+++|+|++.||++
T Consensus 257 ~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~-~~~~~~~f~a~i~~l~~~~~~ 335 (406)
T TIGR03680 257 GGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGT-LPPVWESLELEVHLLERVVGT 335 (406)
T ss_pred cccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCC-CCCceeEEEEEEEEEecccCc
Confidence 24799999999999999999999999984 677889999999999874 55678999999999976
Q ss_pred -----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceE
Q psy13961 350 -----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRF 424 (459)
Q Consensus 350 -----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grf 424 (459)
+.+|++||++++|+++.+++|+|..+.. + .++++|.+|+|+...+ ||
T Consensus 336 ~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~--------------------~--~~~l~l~~p~~~~~g~------r~ 387 (406)
T TIGR03680 336 EEELKVEPIKTGEVLMLNVGTATTVGVVTSARK--------------------D--EIEVKLKRPVCAEEGD------RV 387 (406)
T ss_pred ccccccccCCCCCEEEEEEccceEEEEEEEcCC--------------------c--EEEEEECCcEEcCCCC------EE
Confidence 3789999999999999999999998621 1 3778899999997765 99
Q ss_pred EE--EECC--ceEEEEEE
Q psy13961 425 AV--RDMR--QTVAVGVI 438 (459)
Q Consensus 425 il--rd~~--~tva~G~V 438 (459)
+| |.++ +++|.|.|
T Consensus 388 ~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 388 AISRRVGGRWRLIGYGII 405 (406)
T ss_pred EEEEecCCceEEEEEEEe
Confidence 99 4555 79999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=1.3e-53 Score=444.58 Aligned_cols=341 Identities=24% Similarity=0.364 Sum_probs=287.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++||+|||||||+++|+.. .+|..++|+++|+|++..+..+++.+..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999621 15667788999999999999999988999
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
+|||||||++|.++|..++..+|++++|||+++|.++ |+++|+.++..+++|++++|+||||+++ +..+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~-------qT~ehl~il~~lgi~~iIVVlNK~Dlv~----~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMT-------QTGEHLAVLDLLGIPHTIVVITKADRVN----EEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEECCCCCC----HHHH
Confidence 9999999999999999999999999999999987544 9999999999999998999999999986 3556
Q ss_pred HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC--CCCCCCC
Q psy13961 168 EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP--SRPTEKP 245 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~--~~~~~~p 245 (459)
+.+.+++..+++..++. .+++++|+||++|+|+ ++|.+.|..++.. ....++|
T Consensus 122 ~~~~~ei~~~l~~~~~~-~~~~ii~vSA~tG~GI------------------------~eL~~~L~~l~~~~~~~~~~~p 176 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL-KNAKIFKTSAKTGQGI------------------------GELKKELKNLLESLDIKRIQKP 176 (581)
T ss_pred HHHHHHHHHHHHHhCCC-CCCcEEEEeCCCCCCc------------------------hhHHHHHHHHHHhCCCcCcCCC
Confidence 66777888888776653 2578999999999999 4444444333211 1125789
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
|+|+|+++|+++|.|+|++|+|.+|++++||+|.++|.+..++|++|++++.++++|.|||+|+++|++++..++++|++
T Consensus 177 ~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~ 256 (581)
T TIGR00475 177 LRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLL 256 (581)
T ss_pred cEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEE
Q psy13961 326 AGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLV 405 (459)
Q Consensus 326 l~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~ 405 (459)
++++... ...+.+.+.. ..++.+|+.+.+|+++.++.|++..+.. + .++++
T Consensus 257 ~~~~~~~----~~~~~~~~~~---~~~l~~~~~~~~~~gt~~~~~~i~~l~~--------------------~--~~~l~ 307 (581)
T TIGR00475 257 ILTPEDP----KLRVVVKFIA---EVPLLELQPYHIAHGMSVTTGKISLLDK--------------------G--IALLT 307 (581)
T ss_pred EcCCCCC----CceEEEEEEc---CCccCCCCeEEEEEeceEEEEEEEEccC--------------------c--EEEEE
Confidence 8765432 2233333322 3679999999999999999999987631 1 77788
Q ss_pred eCCeEEeeecCCCCCcceEEEEEC-CceEEEEEEEeecCCCccc
Q psy13961 406 PSKPMCVESFSEFPPLGRFAVRDM-RQTVAVGVIKVNNNHGNKY 448 (459)
Q Consensus 406 l~~~i~~~~~~~~~~~grfilrd~-~~tva~G~V~~v~~~~~~~ 448 (459)
+++|+++...+ ||++|++ .+|+|+|.|... +...++
T Consensus 308 l~~P~~~~~gd------~~i~r~~~~~tiggg~vl~~-~~~~~~ 344 (581)
T TIGR00475 308 LDAPLILAKGD------KLVLRDSSGNFLAGARVLEP-PVRVKR 344 (581)
T ss_pred ECCceecCCCC------EEEEEeCCCEEEeeeEEecC-Ccccch
Confidence 99999997665 9999995 489999999988 555544
No 27
>KOG0463|consensus
Probab=100.00 E-value=5.8e-54 Score=399.45 Aligned_cols=364 Identities=28% Similarity=0.463 Sum_probs=297.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee--eeEE----
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKF---- 80 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~---- 80 (459)
..+|+++|++|+|||||++.|++. .++ +|+|..+.. +..+++|.+.|.|..++ ...|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHg--eLD-------------nGRG~ARqk--LFRHKHEiESGRTSSVGNDILGFD~~G 195 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHG--ELD-------------NGRGAARQK--LFRHKHEIESGRTSSVGNDILGFDVHG 195 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeec--ccc-------------cCccHHHHH--HhhhhhhcccCccccccccceeecccc
Confidence 579999999999999999999753 333 333333322 22333444444444322 1111
Q ss_pred -------------------eeCCEEEEEEeCCCccchHhHHHHhhc--ccCEEEEEEECCCCceeccccCCCchHHHHHH
Q psy13961 81 -------------------ETSKFYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALL 139 (459)
Q Consensus 81 -------------------~~~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~ 139 (459)
+...+.++|||.+||++|+++++.++. .+|+.+|+|-|+.|.. +.|+||+.+
T Consensus 196 NvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgL 268 (641)
T KOG0463|consen 196 NVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGL 268 (641)
T ss_pred ccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhh
Confidence 223478999999999999999999986 4999999999998864 499999999
Q ss_pred HHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC---------------------ceeeEeecCCCCC
Q psy13961 140 AFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP---------------------ATVAFVPISGWHG 198 (459)
Q Consensus 140 ~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~---------------------~~~~~i~iSa~~g 198 (459)
+.++.+| +++|++|+|++.. ..+++..+.+.++++..|+.. .-+|++.+|..+|
T Consensus 269 ALaL~VP-VfvVVTKIDMCPA----NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG 343 (641)
T KOG0463|consen 269 ALALHVP-VFVVVTKIDMCPA----NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG 343 (641)
T ss_pred hhhhcCc-EEEEEEeeccCcH----HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC
Confidence 9999999 7888999999984 556677777778887766631 0134455555555
Q ss_pred CccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC--CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCC
Q psy13961 199 DNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR--PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM 276 (459)
Q Consensus 199 ~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~--~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd 276 (459)
+|+ +||..+.+++++.+ ..+.|..|.|+++|.++|+|+|+.|+..+|+++.+|
T Consensus 344 ~NL-------------------------~LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND 398 (641)
T KOG0463|consen 344 TNL-------------------------PLLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLND 398 (641)
T ss_pred CCh-------------------------HHHHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEecc
Confidence 554 78888888887654 356889999999999999999999999999999999
Q ss_pred eEEEecCC----eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCCCC
Q psy13961 277 LVTFAPAN----LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQ 352 (459)
Q Consensus 277 ~v~~~p~~----~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~ 352 (459)
.+.++|.. .+..|+||+..+-+|..+.+||.+.++|+.++..++++|||+.+++- .|.++|+|+|+|.+|+||+.
T Consensus 399 ~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~l-kPqAsweFEaEILVLHHPTT 477 (641)
T KOG0463|consen 399 ILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKL-KPQASWEFEAEILVLHHPTT 477 (641)
T ss_pred EEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCC-CcceeeEEeeeEEEEecCCc
Confidence 99999975 57789999999999999999999999999999999999999999875 67899999999999999999
Q ss_pred CCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEe-CCeEEeeecCCCCCcceEEEEECCc
Q psy13961 353 ISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVP-SKPMCVESFSEFPPLGRFAVRDMRQ 431 (459)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l-~~~i~~~~~~~~~~~grfilrd~~~ 431 (459)
|.+.||.++||++.+++|+|..+ ..+||+.||++.|+|++ ..|.|+.+. .|++||+++
T Consensus 478 IsprYQAMvHcGSiRQTAtivsM--------------~kdcLRTGDka~V~FrFIkqPEYir~g------qrlVFREGR- 536 (641)
T KOG0463|consen 478 ISPRYQAMVHCGSIRQTATIVSM--------------GKDCLRTGDKAKVQFRFIKQPEYIRPG------QRLVFREGR- 536 (641)
T ss_pred cCcchhheeeeccccceeeeeec--------------ChhhhhcCCcceEEEEEecCcceecCC------ceEEeeccc-
Confidence 99999999999999999999887 34899999999999995 578777654 499999987
Q ss_pred eEEEEEEEeecCCCc
Q psy13961 432 TVAVGVIKVNNNHGN 446 (459)
Q Consensus 432 tva~G~V~~v~~~~~ 446 (459)
|.|+|.|.++.+...
T Consensus 537 TKAVGti~~~lp~~~ 551 (641)
T KOG0463|consen 537 TKAVGTISSVLPQES 551 (641)
T ss_pred ceeeeeecccccccc
Confidence 999999999886543
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-51 Score=393.21 Aligned_cols=338 Identities=28% Similarity=0.407 Sum_probs=288.9
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
.|+..||+++|||||+..|.+ ...|..++|.+||+|+|++++++...++.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg----------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG----------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc----------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 588999999999999999952 3378899999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|||+|||++|+++|+.++...|+++||||+++|... ||.||+.++..+|+++.++|+||+|+++. ++.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~-------qtgEhL~iLdllgi~~giivltk~D~~d~----~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA-------QTGEHLLILDLLGIKNGIIVLTKADRVDE----ARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch-------hhHHHHHHHHhcCCCceEEEEeccccccH----HHHH
Confidence 999999999999999999999999999999988665 99999999999999999999999999973 4555
Q ss_pred HHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC-CCCCCCCCCee
Q psy13961 169 EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL-PPSRPTEKPLR 247 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~-~~~~~~~~p~~ 247 (459)
+..+++...+ .+ ++.+++++|+.+|+|+ ++|-+.|.+++ ++.++.+.||+
T Consensus 123 ~~i~~Il~~l---~l--~~~~i~~~s~~~g~GI------------------------~~Lk~~l~~L~~~~e~d~~~~fr 173 (447)
T COG3276 123 QKIKQILADL---SL--ANAKIFKTSAKTGRGI------------------------EELKNELIDLLEEIERDEQKPFR 173 (447)
T ss_pred HHHHHHHhhc---cc--ccccccccccccCCCH------------------------HHHHHHHHHhhhhhhhccCCceE
Confidence 5444444333 33 5678899999999999 78888887776 46677889999
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEEEc
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAG 327 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~ 327 (459)
++|+++|+++|+|+|++|++.||++++||++++.|.++.++|+|||.+++++++|.||++|+++|++++.+++.||++|.
T Consensus 174 i~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 174 IAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred EEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccceEEEEEEEecC-CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEe
Q psy13961 328 DSKASPPKATQDFTAQVIVLNH-PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVP 406 (459)
Q Consensus 328 ~~~~~~~~~~~~f~a~i~~l~~-~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l 406 (459)
+++ +..++.+|.+.+-|.+. ..++.+++.+.+|.+...++|++..+... .++.+
T Consensus 254 ~~~--~~~v~~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l~~~-----------------------~~l~~ 308 (447)
T COG3276 254 KPE--PLEVTTRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPLEKN-----------------------AELNL 308 (447)
T ss_pred cCC--CCCcceEEEEEEEeccccccccCCCceEEEEEeccccceEeeecccc-----------------------ceeee
Confidence 865 34678999999988753 57899999999999999999999877431 34555
Q ss_pred CCeEEeeecCCCCCcceEEEEECC--ceEEEEEEEeecCCC
Q psy13961 407 SKPMCVESFSEFPPLGRFAVRDMR--QTVAVGVIKVNNNHG 445 (459)
Q Consensus 407 ~~~i~~~~~~~~~~~grfilrd~~--~tva~G~V~~v~~~~ 445 (459)
.+|+.... .++++||+.. .+.+++.|.......
T Consensus 309 ~k~i~~~~------~~~l~lr~~~a~~~~~g~rvl~~~~~~ 343 (447)
T COG3276 309 VKPIALGD------NDRLVLRDNSAVIKLAGARVLSLNLPL 343 (447)
T ss_pred eccccccc------CceEEEEcccceeeeccceEEecCCCC
Confidence 66655432 2367777763 566666776655333
No 29
>KOG0052|consensus
Probab=100.00 E-value=9.6e-50 Score=378.50 Aligned_cols=373 Identities=85% Similarity=1.288 Sum_probs=342.8
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|++.+.+++|+++||+++||||+.+ +.++.++.+.++++.+++.+.|+|+|.|+|++|+...|+++|++|+.....+
T Consensus 1 ~~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~ 77 (391)
T KOG0052|consen 1 MGKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 77 (391)
T ss_pred CCCcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecc
Confidence 7889999999999999999999998 6789999999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
++..+.++++|.|||.+|.++|+.+.++||.++++|.+..|.||+++...+|++||+.++..+|+.++++.+||||...+
T Consensus 78 ~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 78 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999989999999999988
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
.|++.++.++.+..+...+..++++ ...
T Consensus 158 ~~s~~r~~ei~k~~~~~~~~~g~n~----------------------------------------~~~------------ 185 (391)
T KOG0052|consen 158 PYSEARYEEIKKEVSSYIKKIGYNP----------------------------------------AAV------------ 185 (391)
T ss_pred CccccchhhhheeeeeeeeccccCC----------------------------------------hhh------------
Confidence 8989888887666555444444321 111
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..++|.+.+.| +..|.++.++.+...|...+.++++..+++..-.++.+|++++++..++...++
T Consensus 186 ---------~~~~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i 250 (391)
T KOG0052|consen 186 ---------LQDVYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDI 250 (391)
T ss_pred ---------hccceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcc
Confidence 34556665555 788899999999998888888999999988877789999999999999999999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++|+++.+.++.|+.....|.+++.+|+||..|..||.|++-||+..+.|++..|..++|..+++.++..|++++.++.+
T Consensus 251 ~~gnV~~dsK~~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daa 330 (391)
T KOG0052|consen 251 DRGNVVGDSKNDPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAA 330 (391)
T ss_pred cccceecccccCCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcce
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecC
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNN 443 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~ 443 (459)
.+...+.+|+|+|.++.++++|||.+||.++|+|.|+|.++..
T Consensus 331 i~~~vp~kp~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k 373 (391)
T KOG0052|consen 331 IVEMVPGKPLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDK 373 (391)
T ss_pred eeeeccCCccccccccccccccchhhhhhhccccccceeeeee
Confidence 9999999999999999999999999999999999999999873
No 30
>KOG1143|consensus
Probab=100.00 E-value=8.5e-48 Score=357.97 Aligned_cols=363 Identities=24% Similarity=0.367 Sum_probs=304.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE------
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF------ 80 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~------ 80 (459)
.++++++|..|+|||||++.|+.. .+ ++|+|..+++ +..+++|...|.|..+.+..+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQg--eL-------------DnG~GrARln--~FRh~HEiqsGrTSsis~evlGFd~~g 229 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQG--EL-------------DNGNGRARLN--IFRHPHEIQSGRTSSISNEVLGFDNRG 229 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecc--cc-------------cCCCCeeeee--hhcchhhhccCcccccchhcccccccc
Confidence 679999999999999999999743 23 3677877776 456777888888876654322
Q ss_pred ---------------eeCCEEEEEEeCCCccchHhHHHHhhcc--cCEEEEEEECCCCceeccccCCCchHHHHHHHHHc
Q psy13961 81 ---------------ETSKFYVTIIDAPGHRDFIKNMITGTSQ--ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL 143 (459)
Q Consensus 81 ---------------~~~~~~~~liDtpG~~~~~~~~~~~~~~--aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~ 143 (459)
+.+.+.++|||.+||.+|.++++.++.. +|+++|||+|+.|... .|+||+.++.++
T Consensus 230 ~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-------tTrEHLgl~~AL 302 (591)
T KOG1143|consen 230 KVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-------TTREHLGLIAAL 302 (591)
T ss_pred cccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-------ccHHHHHHHHHh
Confidence 2245789999999999999999999975 8999999999988544 899999999999
Q ss_pred CCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC---------------------ceeeEeecCCCCCCccc
Q psy13961 144 GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP---------------------ATVAFVPISGWHGDNML 202 (459)
Q Consensus 144 ~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~---------------------~~~~~i~iSa~~g~~i~ 202 (459)
++| ++|+++|||++++ ..++.+.+++.+++++.|+.. .-+|++.+|..+|++
T Consensus 303 ~iP-fFvlvtK~Dl~~~----~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg-- 375 (591)
T KOG1143|consen 303 NIP-FFVLVTKMDLVDR----QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG-- 375 (591)
T ss_pred CCC-eEEEEEeeccccc----hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc--
Confidence 999 8888999999974 667888899999998888742 113455555555544
Q ss_pred cccCCCCCccccccccccCCCChhhHHHhccccCCCCCC-------CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecC
Q psy13961 203 EVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP-------TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG 275 (459)
Q Consensus 203 ~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~-------~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~g 275 (459)
..|+..+.+.++|... ...|..|.|+++|+++.+|.|+.|.+.+|.++.|
T Consensus 376 -----------------------l~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg 432 (591)
T KOG1143|consen 376 -----------------------LRLLRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEG 432 (591)
T ss_pred -----------------------hhHHHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccC
Confidence 4677777777766432 2467789999999999999999999999999999
Q ss_pred CeEEEecCC----eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCCC
Q psy13961 276 MLVTFAPAN----LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPG 351 (459)
Q Consensus 276 d~v~~~p~~----~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~ 351 (459)
+.+.++|.. .+.+|.+|+.++.++..+.|||.+.+.|...+...+++|||+..++. .|..+..|+|++.+|-|.+
T Consensus 433 ~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~-nP~~c~~F~A~~~lLfHaT 511 (591)
T KOG1143|consen 433 ADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDH-NPPVCYEFTANLLLLFHAT 511 (591)
T ss_pred ceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCC-CCceEEEEeeeehhhhhhH
Confidence 999999976 68899999999999999999999999998777778999999998776 4667999999999999999
Q ss_pred CCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEE-eCCeEEeeecCCCCCcceEEEEECC
Q psy13961 352 QISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLV-PSKPMCVESFSEFPPLGRFAVRDMR 430 (459)
Q Consensus 352 ~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~~~~~~~~grfilrd~~ 430 (459)
.|..|+|..+|+|+.+++|.|..|. +.++|++|++|.|.|. +.+|.++.+.+ +++||++.
T Consensus 512 ~i~~GFQ~TVhiGsvrqTAvi~~I~-------------~~d~lrtg~~AvV~f~F~~hPEyir~G~------~ilfReG~ 572 (591)
T KOG1143|consen 512 YICEGFQATVHIGSVRQTAVITHID-------------DADCLRTGKWAVVKFCFAYHPEYIREGS------PILFREGK 572 (591)
T ss_pred hheecceEEEEEcceeeeeeeeeec-------------ccccccCCceEEEEEEecCCchhccCCC------eeeeeccc
Confidence 9999999999999999999998874 4689999999999999 56887776544 88888776
Q ss_pred ceEEEEEEEeecCC
Q psy13961 431 QTVAVGVIKVNNNH 444 (459)
Q Consensus 431 ~tva~G~V~~v~~~ 444 (459)
|.|+|.|++|.+-
T Consensus 573 -tKGiG~Vt~Vfp~ 585 (591)
T KOG1143|consen 573 -TKGIGEVTKVFPC 585 (591)
T ss_pred -ccccceEEEEEec
Confidence 9999999999764
No 31
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-44 Score=325.77 Aligned_cols=343 Identities=29% Similarity=0.448 Sum_probs=284.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-- 82 (459)
.+..||+++||+|+|||||+.+|. ...+|.+.+|.+||+||.++|.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als----------------------------GvwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS----------------------------GVWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhh----------------------------ceeeechhHHHhcCcEEEeccccCceEe
Confidence 368999999999999999999995 23478999999999999988754211
Q ss_pred ------------------------CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH
Q psy13961 83 ------------------------SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 138 (459)
Q Consensus 83 ------------------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~ 138 (459)
--+.+.|+|+|||+-.+.+|++|+...|+|+|||+|++. ++++||+||+.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEp------cPQPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP------CPQPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCC------CCCCchHHHHH
Confidence 026899999999999999999999999999999999875 34789999999
Q ss_pred HHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCcccccccc
Q psy13961 139 LAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIER 218 (459)
Q Consensus 139 ~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~ 218 (459)
.+..+|++++|++-||+|++.. ++..+--+++++|++ |--.++.|++|+||..+.|+
T Consensus 134 AleIigik~iiIvQNKIDlV~~----E~AlE~y~qIk~Fvk--Gt~Ae~aPIIPiSA~~~~NI----------------- 190 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDLVSR----ERALENYEQIKEFVK--GTVAENAPIIPISAQHKANI----------------- 190 (415)
T ss_pred HHhhhccceEEEEecccceecH----HHHHHHHHHHHHHhc--ccccCCCceeeehhhhccCH-----------------
Confidence 9999999999999999999974 443444455566665 33346789999999999999
Q ss_pred ccCCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeC--C------ceeEEEEEEEeeeEecCCeEEEecCC-----
Q psy13961 219 KEGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIG--G------IGTVPVGRVETGVIKPGMLVTFAPAN----- 284 (459)
Q Consensus 219 ~~~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~--~------~G~v~~G~v~sG~l~~gd~v~~~p~~----- 284 (459)
+.|+++|.++.| |.++.++|.+|+|.+.|.+. | .|-|..|.+.+|.+++||++.+.|+-
T Consensus 191 -------Dal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~ 263 (415)
T COG5257 191 -------DALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKG 263 (415)
T ss_pred -------HHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecC
Confidence 899999988765 67888999999999999985 2 47799999999999999999999863
Q ss_pred -------eEEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecC-----
Q psy13961 285 -------LTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH----- 349 (459)
Q Consensus 285 -------~~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~----- 349 (459)
...+|.||+.....+++|.||-.+++... .+...|-..|.|++.+.. .|.....|+.+...|+.
T Consensus 264 ~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~-lPpv~~~~~ie~~LL~RvvG~~ 342 (415)
T COG5257 264 GKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGT-LPPVWTSIRIEYHLLERVVGTK 342 (415)
T ss_pred CceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCC-CCCceEEEEEEeeehhhhhCcc
Confidence 23678899999999999999999999743 234567788999998876 56678999999999873
Q ss_pred ----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEE
Q psy13961 350 ----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFA 425 (459)
Q Consensus 350 ----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfi 425 (459)
-.+|+.|...++.+++...-+.+.+... | .+++.|.+|+|.+..+ |+.
T Consensus 343 ~e~kvepik~~E~Lml~VGtatT~GvV~~~k~--------------------d--~~ev~Lk~Pvcae~g~------rva 394 (415)
T COG5257 343 EELKVEPIKTNEVLMLNVGTATTVGVVTSAKK--------------------D--EIEVKLKRPVCAEIGE------RVA 394 (415)
T ss_pred cccccccccCCCeEEEEeecceeEEEEEEecC--------------------c--eEEEEeccceecCCCC------EEE
Confidence 1379999999999999999888887632 1 5678899999998765 777
Q ss_pred EEEC--C--ceEEEEEEEe
Q psy13961 426 VRDM--R--QTVAVGVIKV 440 (459)
Q Consensus 426 lrd~--~--~tva~G~V~~ 440 (459)
+-.. + +.+|.|.|..
T Consensus 395 isRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 395 ISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred EEeeecceEEEEeEEEEec
Confidence 6543 2 7999999875
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.9e-43 Score=363.67 Aligned_cols=278 Identities=28% Similarity=0.383 Sum_probs=233.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
+||+++||+|||||||+++|++.++.+.+.. .. -.+++|..++|+++|+|+......++|.++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~--------------~v-~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANE--------------AV-AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccc--------------cc-eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 6999999999999999999999888775431 00 13689999999999999999999999999999
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
+|||||||.+|..++.++++.+|+++|||||.+|.+. |+++++..+...++| +|+|+||||+.+ .++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~-------qT~~~l~~a~~~~ip-~IVviNKiD~~~-----a~~ 133 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMP-------QTRFVLKKALELGLK-PIVVINKIDRPS-----ARP 133 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcH-------HHHHHHHHHHHCCCC-EEEEEECCCCCC-----cCH
Confidence 9999999999999999999999999999999988554 999999999999999 688899999976 456
Q ss_pred HHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC-CCCCC
Q psy13961 168 EEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS-RPTEK 244 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~-~~~~~ 244 (459)
+++.+++..++..++...+ .++++++||++|.+..+.... +.....|++.|.+.+|++ .+.+.
T Consensus 134 ~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~--------------~~gi~~Lld~Iv~~lP~P~~~~~~ 199 (594)
T TIGR01394 134 DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDP--------------SDNMAPLFDAIVRHVPAPKGDLDE 199 (594)
T ss_pred HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCccc--------------ccCHHHHHHHHHHhCCCCCCCCCC
Confidence 6677777777776665432 368999999999765331100 011268889988877754 46689
Q ss_pred CeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEec----cccceeEcCCCeEEEEEccCcc
Q psy13961 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSV 317 (459)
Q Consensus 245 p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~ 317 (459)
||+++|.+++..++.|++++|||++|+|++||.|++.|.+ .+.+|++|+.. +.++++|.|||+|+++ + .
T Consensus 200 pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--g--l 275 (594)
T TIGR01394 200 PLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--G--L 275 (594)
T ss_pred CEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--C--C
Confidence 9999999999999999999999999999999999999874 35789998864 6899999999999875 5 4
Q ss_pred cCcceeEEEccCCC
Q psy13961 318 KELRRGFVAGDSKA 331 (459)
Q Consensus 318 ~~i~~G~vl~~~~~ 331 (459)
.++.+||+||+++.
T Consensus 276 ~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 276 EDINIGETIADPEV 289 (594)
T ss_pred cccCCCCEEeCCCc
Confidence 68999999998765
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=342.51 Aligned_cols=280 Identities=28% Similarity=0.354 Sum_probs=231.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+||+++||+|||||||+++|++..+.+.+.... -.+++|..+.|+++|+|+......+++.++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46899999999999999999999887776542100 047899999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||.+|...+.++++.+|++|+|||+.+|... |++.++..+..+++| .++++||||+.+ .
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-------qt~~~l~~a~~~gip-~IVviNKiD~~~-----a 135 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-------QTRFVTKKAFAYGLK-PIVVINKVDRPG-----A 135 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-------HHHHHHHHHHHcCCC-EEEEEECcCCCC-----C
Confidence 999999999999999999999999999999999988544 999999999999999 578899999986 5
Q ss_pred HHHHHHHHHHhhhhhcCcCC--ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC-CCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNP--ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS-RPT 242 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~--~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~-~~~ 242 (459)
+++++.+++..++..++... ..+|++++||++|.+..+.... .+ ....|+++|.+.+|++ ++.
T Consensus 136 ~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~---~~-----------~i~~Lld~Ii~~iP~P~~~~ 201 (607)
T PRK10218 136 RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDM---AE-----------DMTPLYQAIVDHVPAPDVDL 201 (607)
T ss_pred chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccc---cc-----------chHHHHHHHHHhCCCCCCCC
Confidence 56677777777776555432 2478999999999875432110 00 1257888887766654 567
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC-Ce--EEEEEEEEec----cccceeEcCCCeEEEEEccC
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA-NL--TTEVKSVEMH----HEALQEAVPGDNVGFNVKNV 315 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~-~~--~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~ 315 (459)
++||+++|++++..++.|++++|||++|+|++||.|++.+. +. +.+|.+|... +.++++|.|||+|+++ +
T Consensus 202 ~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g- 278 (607)
T PRK10218 202 DGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--G- 278 (607)
T ss_pred CCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--C-
Confidence 89999999999999999999999999999999999999876 43 5788888643 6889999999999975 4
Q ss_pred cccCcceeEEEccCCC
Q psy13961 316 SVKELRRGFVAGDSKA 331 (459)
Q Consensus 316 ~~~~i~~G~vl~~~~~ 331 (459)
..++..||+||+++.
T Consensus 279 -l~~~~~GdTl~~~~~ 293 (607)
T PRK10218 279 -LGELNISDTVCDTQN 293 (607)
T ss_pred -ccccccCcEEecCCC
Confidence 577899999998764
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3e-39 Score=309.22 Aligned_cols=307 Identities=26% Similarity=0.351 Sum_probs=245.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.+||+|+.|+|||||||+..||.++|....+.-. ...+||....|++|||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 567899999999999999999999998887643100 03569999999999999988888899999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
..++|+|||||.||-.++.+.++..|+++|+|||.+|.++ ||+..+..+.++|+++ |||+||+|+++
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-------QTrFVlkKAl~~gL~P-IVVvNKiDrp~----- 134 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-------QTRFVLKKALALGLKP-IVVINKIDRPD----- 134 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCC-------chhhhHHHHHHcCCCc-EEEEeCCCCCC-----
Confidence 9999999999999999999999999999999999999766 9999999999999995 77789999997
Q ss_pred HHHHHHHHHHHhhhhhcCcCCce--eeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC-CCC
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPAT--VAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP-SRP 241 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~--~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~-~~~ 241 (459)
.+.+++.++...++-.++...++ +|++..||+.|.--.+.... ...-..|++.|..+.|+ ..+
T Consensus 135 Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~--------------~~~m~pLfe~I~~hvp~P~~~ 200 (603)
T COG1217 135 ARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE--------------ADDMAPLFETILDHVPAPKGD 200 (603)
T ss_pred CCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc--------------ccchhHHHHHHHHhCCCCCCC
Confidence 67788899998888888776554 67888999988544322111 00126899998877664 456
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEe----ccccceeEcCCCeEEEEEcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEM----HHEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~ 314 (459)
.+.||.|.|...-..++.|++..|||.+|++++||.|.+...+ ...+|..+.- .+.++++|.|||+|+++ |
T Consensus 201 ~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G 278 (603)
T COG1217 201 LDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--G 278 (603)
T ss_pred CCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc--C
Confidence 7999999998776677899999999999999999999987755 4567777654 47889999999999876 5
Q ss_pred CcccCcceeEEEccCCCCCCcc-----cceEEEEEEEecCCCCCCCCC
Q psy13961 315 VSVKELRRGFVAGDSKASPPKA-----TQDFTAQVIVLNHPGQISNGY 357 (459)
Q Consensus 315 ~~~~~i~~G~vl~~~~~~~~~~-----~~~f~a~i~~l~~~~~i~~g~ 357 (459)
..++..|+++|+++...+.+ -+.+...+.+-+.|..=+.|.
T Consensus 279 --~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk 324 (603)
T COG1217 279 --LEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGK 324 (603)
T ss_pred --cccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcCCc
Confidence 57788999999987543211 133444444555554434443
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.7e-39 Score=339.08 Aligned_cols=272 Identities=28% Similarity=0.388 Sum_probs=225.2
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|...+..+||+++||+|||||||+++|++.+|.++++.. -.+++|..++|+++|+|+......+
T Consensus 1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~ 64 (600)
T PRK05433 1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRL 64 (600)
T ss_pred CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEE
Confidence 445566789999999999999999999998888864311 1577999999999999999877776
Q ss_pred eeC-----CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 81 ETS-----KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 81 ~~~-----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
.|. ++.++|||||||.+|...+.++++.+|++|||||+++++.. |+.+++..+...++| +++|+||+
T Consensus 65 ~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~-------qt~~~~~~~~~~~lp-iIvViNKi 136 (600)
T PRK05433 65 NYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA-------QTLANVYLALENDLE-IIPVLNKI 136 (600)
T ss_pred EEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEEEECC
Confidence 653 68899999999999999999999999999999999987432 899999888888999 88999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI 235 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~ 235 (459)
|+.+. .++++.+++... +++. ...++++||++|.|+ ..|+++|.+.
T Consensus 137 Dl~~a-----~~~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI------------------------~~Ll~~I~~~ 182 (600)
T PRK05433 137 DLPAA-----DPERVKQEIEDV---IGID--ASDAVLVSAKTGIGI------------------------EEVLEAIVER 182 (600)
T ss_pred CCCcc-----cHHHHHHHHHHH---hCCC--cceEEEEecCCCCCH------------------------HHHHHHHHHh
Confidence 99752 233444444443 3432 235899999999999 7899999877
Q ss_pred CCCC-CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---cccceeEcCCCeEEEE
Q psy13961 236 LPPS-RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQEAVPGDNVGFN 311 (459)
Q Consensus 236 ~~~~-~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~a~aGd~v~l~ 311 (459)
+|++ .+.++|++++|.+++..++.|++++|||.+|+|++||.|++.|++...+|.+|.+. ..++++|.|||++. .
T Consensus 183 lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~-i 261 (600)
T PRK05433 183 IPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGY-I 261 (600)
T ss_pred CccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEE-E
Confidence 6644 56789999999999999999999999999999999999999999999999998864 57889999999544 4
Q ss_pred EccC-cccCcceeEEEccCCC
Q psy13961 312 VKNV-SVKELRRGFVAGDSKA 331 (459)
Q Consensus 312 l~~~-~~~~i~~G~vl~~~~~ 331 (459)
+.++ +..++++||+|++...
T Consensus 262 ~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 262 IAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred ecccccccccCCCCEEECCCC
Confidence 4555 3468999999998654
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.9e-39 Score=335.28 Aligned_cols=267 Identities=30% Similarity=0.433 Sum_probs=221.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
..+||+++||+|+|||||+++|++.++.++++. .+ .+++|..++|+++|+|+......+.+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~----------~~------~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE----------MR------EQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc----------cc------ccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 468999999999999999999999888876431 01 567899999999999999877766553
Q ss_pred ---CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 84 ---KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
.+.++|||||||.+|...+.++++.+|++|||+|++++... |+.+++..+...++| +++|+||+|+.+.
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~-------qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEA-------QTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCH-------hHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 37899999999999999999999999999999999987433 888888888888999 8889999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC-C
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP-S 239 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~-~ 239 (459)
..+++.+++.+. +++. ..+++++||++|.|+ +.|+++|.+.+|+ .
T Consensus 138 -----~~~~~~~el~~~---lg~~--~~~vi~vSAktG~GI------------------------~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 138 -----DPERVKKEIEEV---IGLD--ASEAILASAKTGIGI------------------------EEILEAIVKRVPPPK 183 (595)
T ss_pred -----CHHHHHHHHHHH---hCCC--cceEEEeeccCCCCH------------------------HHHHHHHHHhCCCCC
Confidence 123334444433 2332 235799999999999 7899999776664 4
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEecc---ccceeEcCCCeEEEEEccC-
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHH---EALQEAVPGDNVGFNVKNV- 315 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~---~~v~~a~aGd~v~l~l~~~- 315 (459)
.+.++|++++|.+++..++.|++++|||.+|+|++||.|++.|++...+|.+|...+ .++++|.||| +++.+.++
T Consensus 184 ~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~ 262 (595)
T TIGR01393 184 GDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIK 262 (595)
T ss_pred CCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEecccc
Confidence 567899999999999999999999999999999999999999999899999998765 7789999999 55555665
Q ss_pred cccCcceeEEEccCCC
Q psy13961 316 SVKELRRGFVAGDSKA 331 (459)
Q Consensus 316 ~~~~i~~G~vl~~~~~ 331 (459)
+..++++||+|++.+.
T Consensus 263 ~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 263 DVSDVRVGDTITHVKN 278 (595)
T ss_pred ccCccCCCCEEECCCC
Confidence 3478999999998654
No 37
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=3.6e-39 Score=298.75 Aligned_cols=218 Identities=71% Similarity=1.133 Sum_probs=197.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++||+|||||||+++|++.+|.+++..++++.+++...|+++++|++++|..++|++||+|++.....+++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 69999999999999999999999999998888888888889999999999999999999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|+|||||.+|...++.+++.+|++|+|||+.++.++.++....++.+++..+..++++++++|+||||+...+|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998755544444568999999888888777999999999985456778899
Q ss_pred HHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 169 EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
++.+++..+++.+++...+++++|+||++|+|+.+++..++||+| ++|+++|+.+.|+
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g------------~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKG------------PTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccC------------CcHHHHHhCCCCC
Confidence 999999988988888766789999999999999999999999986 8999999988665
No 38
>KOG0462|consensus
Probab=100.00 E-value=2.5e-39 Score=315.54 Aligned_cols=264 Identities=31% Similarity=0.385 Sum_probs=221.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
..+|++|+.|+|||||||..+|+..+|.++++..+ ..++|+.+.||+||||+......+-+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~~ 122 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKDG 122 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEcC
Confidence 35799999999999999999999999988764322 3569999999999999998888777766
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
+.+++||||||.||..++.+.+..+|++||||||++|+.. ||...+.++...|+. +|.|+||+|++.
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqA-------QT~anf~lAfe~~L~-iIpVlNKIDlp~--- 191 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQA-------QTVANFYLAFEAGLA-IIPVLNKIDLPS--- 191 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchH-------HHHHHHHHHHHcCCe-EEEeeeccCCCC---
Confidence 9999999999999999999999999999999999999654 999999999999999 899999999998
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC-CCCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL-PPSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~-~~~~~ 241 (459)
++.+++.+++.+.+. +. ..+++.+||++|.|+ ++||+++.+.. ||...
T Consensus 192 --adpe~V~~q~~~lF~---~~--~~~~i~vSAK~G~~v------------------------~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 192 --ADPERVENQLFELFD---IP--PAEVIYVSAKTGLNV------------------------EELLEAIIRRVPPPKGI 240 (650)
T ss_pred --CCHHHHHHHHHHHhc---CC--ccceEEEEeccCccH------------------------HHHHHHHHhhCCCCCCC
Confidence 566778788776653 32 236899999999998 78999986655 55567
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---ccccee---EcCCCeEEEEEccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQE---AVPGDNVGFNVKNV 315 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~---a~aGd~v~l~l~~~ 315 (459)
.++|||+.+.+.+...+.|.+..++|..|.+++||+|....+++...|+.+.+. ..++.. +++|++++- .+
T Consensus 241 ~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~-mr-- 317 (650)
T KOG0462|consen 241 RDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICN-MR-- 317 (650)
T ss_pred CCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEec-cc--
Confidence 899999999999999999999999999999999999999999877777776653 344444 445555442 12
Q ss_pred cccCcceeEEEccCC
Q psy13961 316 SVKELRRGFVAGDSK 330 (459)
Q Consensus 316 ~~~~i~~G~vl~~~~ 330 (459)
+..+...||++++..
T Consensus 318 ~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 318 NVKEAQIGDTIAHKS 332 (650)
T ss_pred ccccccccceeeecc
Confidence 257788999998755
No 39
>KOG0461|consensus
Probab=100.00 E-value=5.8e-38 Score=289.76 Aligned_cols=351 Identities=27% Similarity=0.431 Sum_probs=270.8
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|..+....|++++||+|||||||..+|..- +. ....|.++..++||+|.|+++..+
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~-~S-----------------------TaAFDk~pqS~eRgiTLDLGFS~~ 56 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSEL-GS-----------------------TAAFDKHPQSTERGITLDLGFSTM 56 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhh-cc-----------------------chhhccCCcccccceeEeecceee
Confidence 444556789999999999999999999532 11 223688888899999999998876
Q ss_pred ee---------CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEE
Q psy13961 81 ET---------SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 151 (459)
Q Consensus 81 ~~---------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivv 151 (459)
.. +..+++|+|+|||...+++.+.++...|..++|||+..|.. .||.||+.+...+-.+ .|||
T Consensus 57 ~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Q-------tQtAEcLiig~~~c~k-lvvv 128 (522)
T KOG0461|consen 57 TVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQ-------TQTAECLIIGELLCKK-LVVV 128 (522)
T ss_pred ecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccc-------cccchhhhhhhhhccc-eEEE
Confidence 42 34678999999999999999999999999999999998843 4999999888777666 7888
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC----CccccccCCCCCccccccccccCCCChhh
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG----DNMLEVSDKMPWFKGWAIERKEGKADGKC 227 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g----~~i~~~~~~~~w~~~~~~~~~~~~~~g~~ 227 (459)
+||+|....+..+..+++....+++-|+..++. .+.|++++||..| +.+ .+
T Consensus 129 inkid~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G~~~~~~i------------------------~e 183 (522)
T KOG0461|consen 129 INKIDVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADGYFKEEMI------------------------QE 183 (522)
T ss_pred EeccccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCCccchhHH------------------------HH
Confidence 999999876666677888888899999999986 5789999999999 333 78
Q ss_pred HHHhccc-cCCCCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCC
Q psy13961 228 LIEALDA-ILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGD 306 (459)
Q Consensus 228 Ll~~l~~-~~~~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd 306 (459)
|.++|.+ +..|.++.+.||.|.|++.|.++|.|+|.+|+|.+|.++.|+.|.+..-+.+-+|+++++++.++.+|.+||
T Consensus 184 L~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~Gd 263 (522)
T KOG0461|consen 184 LKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGD 263 (522)
T ss_pred HHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhccc
Confidence 8888865 567889999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred eEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecC----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCC
Q psy13961 307 NVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRR 382 (459)
Q Consensus 307 ~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~ 382 (459)
++++.+...+..-+.||-+ +.++.. + ...|-+..++. ..+|..-....+-++.-.+.+++.-+. ..|..
T Consensus 264 R~g~cVtqFd~klleRgi~-~~pg~L--k---~~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~ 336 (522)
T KOG0461|consen 264 RAGFCVTQFDEKLLERGIC-GPPGTL--K---STKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGT 336 (522)
T ss_pred ceeeeeeccCHHHHhcccc-CCCccc--c---eeeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCc
Confidence 9999988877788888843 333321 1 12222222221 134544444444444444444443332 11111
Q ss_pred C-----------CcccccCccccCCCCEEEEEEEeCCeEEeeecC
Q psy13961 383 T-----------GKTTEENPKALKSGDAAIIVLVPSKPMCVESFS 416 (459)
Q Consensus 383 ~-----------~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~ 416 (459)
+ ++ ..--|..+.+.+...+-|.+++|+...+|+
T Consensus 337 ~~tf~~~kEye~~E-~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 337 TSTFQLDKEYENGE-FDMLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred ccccccchhhhccc-cccChhhcCCchheeeeeeecccccCcccc
Confidence 1 11 011356677888888899999999887765
No 40
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-37 Score=299.59 Aligned_cols=268 Identities=28% Similarity=0.434 Sum_probs=229.4
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 82 (459)
.+..+|++++.|.|||||||..+|+..+++++.+.+. +.++|....||+||+||......+.+
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Yk 69 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNYK 69 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEEE
Confidence 4567899999999999999999999999999988665 46799999999999999887665543
Q ss_pred ----CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 83 ----SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 83 ----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
..+.++|||||||-||..++.+++..|.+++|||||++|+- .||..+.+++..+++. +|-|+||+|++
T Consensus 70 ~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGve-------AQTlAN~YlAle~~Le-IiPViNKIDLP 141 (603)
T COG0481 70 AKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQTLANVYLALENNLE-IIPVLNKIDLP 141 (603)
T ss_pred eCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchH-------HHHHHHHHHHHHcCcE-EEEeeecccCC
Confidence 44899999999999999999999999999999999999853 3999999999999999 99999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP- 237 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~- 237 (459)
. .+.+.+++++.+.+ |+.. -..+.+||++|.|+ +++|++|.+..|
T Consensus 142 ~-----Adpervk~eIe~~i---Gid~--~dav~~SAKtG~gI------------------------~~iLe~Iv~~iP~ 187 (603)
T COG0481 142 A-----ADPERVKQEIEDII---GIDA--SDAVLVSAKTGIGI------------------------EDVLEAIVEKIPP 187 (603)
T ss_pred C-----CCHHHHHHHHHHHh---CCCc--chheeEecccCCCH------------------------HHHHHHHHhhCCC
Confidence 7 45567777777664 5543 34688999999999 889999876555
Q ss_pred CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---cccceeEcCCCeEEEEEcc
Q psy13961 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 238 ~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~a~aGd~v~l~l~~ 314 (459)
|..+.++|++..|.|.+-.++.|.|+..||..|++++||+|.++.++....|..+.++ ..+.+...|||. +.-+.+
T Consensus 188 P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeV-G~~~a~ 266 (603)
T COG0481 188 PKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEV-GYIIAG 266 (603)
T ss_pred CCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCce-eEEEEe
Confidence 5567789999999999999999999999999999999999999999999999998875 456778999984 444444
Q ss_pred C-cccCcceeEEEccCC
Q psy13961 315 V-SVKELRRGFVAGDSK 330 (459)
Q Consensus 315 ~-~~~~i~~G~vl~~~~ 330 (459)
+ +..+.+.||+++...
T Consensus 267 iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 267 IKDVRDARVGDTITLAS 283 (603)
T ss_pred eeecccCcccceEeccC
Confidence 4 357899999998654
No 41
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=9.2e-37 Score=280.52 Aligned_cols=207 Identities=40% Similarity=0.690 Sum_probs=187.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++||+|||||||+++|++.++.+..+.+.++..+....+++++.+++++|..++|+++|+|++.....+++.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|+|||||.+|...+..++..+|++|+|+|++.+..+ ++++++.++...+.|++|+|+||||+.+ +.+..++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-------~~~~~~~~~~~~~~~~iIvviNK~D~~~--~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-------QTRRHSYILSLLGIRHVVVAVNKMDLVD--YSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-------hHHHHHHHHHHcCCCcEEEEEEchhccc--CCHHHHH
Confidence 999999999999999999999999999999987543 7888888888888887888899999975 5567788
Q ss_pred HHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 169 EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
++.++++.+++.+++. ..+++|+||++|.|+.+.+..++||+| ++|+++|+.+.|+
T Consensus 152 ~i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g------------~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSENMPWYSG------------PTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCC------------CcHHHHHhcCCCC
Confidence 8888888888888763 467999999999999999999999986 8999999998876
No 42
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.1e-35 Score=319.29 Aligned_cols=301 Identities=24% Similarity=0.296 Sum_probs=223.3
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
+....+||+++||+|||||||+++|++.+|.+++.. .|. ++++|..++|++||+|++.+...+.+
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 80 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AGE-----QLALDFDEEEQARGITIKAANVSMVH 80 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cCc-----ceecCccHHHHHhhhhhhccceEEEE
Confidence 345568999999999999999999999999887531 121 56799999999999999988766654
Q ss_pred ----CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 83 ----SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 83 ----~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.++.++|+|||||.+|..++.++++.+|++|+|||+..|+.. |++.++..+...++| .|+++||||+.
T Consensus 81 ~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~-------~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 81 EYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMP-------QTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred EecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCc-------cHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 578999999999999999999999999999999999988543 999999998889999 58889999987
Q ss_pred CCC------CcHHHHHHHHHHHHhhhhhcC---------cCCceeeEeecCCCCCCcccccc--CC-------CCCcccc
Q psy13961 159 EPP------YSEARFEEIKKEVSGYIKKIG---------YNPATVAFVPISGWHGDNMLEVS--DK-------MPWFKGW 214 (459)
Q Consensus 159 ~~~------~~~~~~~~i~~~l~~~l~~~g---------~~~~~~~~i~iSa~~g~~i~~~~--~~-------~~w~~~~ 214 (459)
..+ ..+.++.++.+++..++..+. +.+.+-.+++.|++.+.+..... .. ++-|...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 232 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKG 232 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcC
Confidence 432 234556666666666655432 12222335566887776553110 00 0000000
Q ss_pred ccc-cccCCCChhhHHHhccccCCCCC--------------------------CCCCCeeEEeEEEEEeCCceeEEEEEE
Q psy13961 215 AIE-RKEGKADGKCLIEALDAILPPSR--------------------------PTEKPLRLPLQDVYKIGGIGTVPVGRV 267 (459)
Q Consensus 215 ~~~-~~~~~~~g~~Ll~~l~~~~~~~~--------------------------~~~~p~~~~i~~v~~~~~~G~v~~G~v 267 (459)
... ....-.-...||++|.+++|.|. +.+.|+.+.|.+++..++.|+++++||
T Consensus 233 ~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV 312 (731)
T PRK07560 233 KQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRV 312 (731)
T ss_pred CHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEE
Confidence 000 00000000368999988877652 124578888999988899999999999
Q ss_pred EeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEccCcccCcceeEEEccCC
Q psy13961 268 ETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 268 ~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~ 330 (459)
++|+|++||.|++.+.+.+.+|..|... ..++++|.|||++++. + ..++.+|++|+++.
T Consensus 313 ~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--g--l~~~~~GdtL~~~~ 375 (731)
T PRK07560 313 FSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVT--G--LKDARAGETVVSVE 375 (731)
T ss_pred EEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEE--c--ccccccCCEEeCCC
Confidence 9999999999999998888899998764 5789999999999985 4 35678999998764
No 43
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.9e-35 Score=267.59 Aligned_cols=195 Identities=37% Similarity=0.530 Sum_probs=167.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+++||+++||+|||||||+++|++... ..|+....-.+.+|..++|+++|+|++.....++++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 468999999999999999999987531 12322211135689999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|+|||||.+|..++.+++..+|++++|||+..|... |+++++.++..+++|++|+|+||||+.. .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-------~~~~~~~~~~~~~~~~iIvviNK~D~~~---~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLARQVGVPYIVVFLNKADMVD---DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCcEEEEEeCCCCCC---cHH
Confidence 999999999999999999999999999999999987433 9999999999999998889999999974 345
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
.++.+.+++..+++.+|+++.+++++|+||++|.|+.+ .++||++ |++|+++|++..|++
T Consensus 136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~---~~~w~~~-----------~~~l~~~l~~~~~~~ 195 (195)
T cd01884 136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD---PNKWVKK-----------ILELLDALDSYIPTP 195 (195)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC---CCcchhc-----------HhHHHHHHHhCCCCC
Confidence 67778889999999999988889999999999999864 5899972 489999999887653
No 44
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2e-34 Score=296.22 Aligned_cols=299 Identities=19% Similarity=0.256 Sum_probs=211.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...+||+++||+|||||||+++|++..+.+.+.... .+++ ......+|..+.|++||+|+......+++.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 456899999999999999999999988877543100 0000 0012347889999999999999999999999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|||||||.+|...+.++++.+|++|+|||+..+... +++..+..++..++| +++++||||+...
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-------~t~~l~~~~~~~~iP-iiv~iNK~D~~~a---- 146 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-------QTRKLMEVCRLRDTP-IFTFINKLDRDGR---- 146 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-------HHHHHHHHHHhcCCC-EEEEEECCccccc----
Confidence 9999999999999999999999999999999999987432 889999999999999 7888999999863
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeec----------C-------CCCCC------ccccccC-CC-CCcccc-----
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPI----------S-------GWHGD------NMLEVSD-KM-PWFKGW----- 214 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~i----------S-------a~~g~------~i~~~~~-~~-~w~~~~----- 214 (459)
.+.++.++++..+... .-+-++|+-.- + .-.|. .+.+..+ .+ .++.+.
T Consensus 147 -~~~~~l~~i~~~l~~~-~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l 224 (526)
T PRK00741 147 -EPLELLDEIEEVLGIA-CAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQL 224 (526)
T ss_pred -CHHHHHHHHHHHhCCC-CeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHH
Confidence 3445555555444311 00001110000 0 00000 0000000 00 001110
Q ss_pred ---------------c--------cccccCCC----ChhhHHHhccccCCCCCC----------CCCCeeEEeEEEE---
Q psy13961 215 ---------------A--------IERKEGKA----DGKCLIEALDAILPPSRP----------TEKPLRLPLQDVY--- 254 (459)
Q Consensus 215 ---------------~--------~~~~~~~~----~g~~Ll~~l~~~~~~~~~----------~~~p~~~~i~~v~--- 254 (459)
. ...-+|++ +...||++|.+++|+|.. .+.+|...|.++.
T Consensus 225 ~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m 304 (526)
T PRK00741 225 REELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANM 304 (526)
T ss_pred HHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecC
Confidence 0 00113333 348999999999886632 1345666666665
Q ss_pred EeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEccCC
Q psy13961 255 KIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 255 ~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~ 330 (459)
..++.|++++.||+||+++.|+.|+....+++.++.++.. .+.++++|.|||++++. +..+++.||+|++.+
T Consensus 305 ~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 305 DPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred CCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 3358899999999999999999999999998889988654 36789999999999885 467899999998754
No 45
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=7.2e-34 Score=303.56 Aligned_cols=291 Identities=25% Similarity=0.300 Sum_probs=219.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+||+++||+|+|||||+++|++.++.+.+. |+-+ ..++++|..+.|+++|+|++.....+++.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v~-~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~ 75 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEVH-DGAATMDWMEQEQERGITITSAATTCFWKDH 75 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------cccc-CCcccCCCCHHHHhCCCCEeccEEEEEECCe
Confidence 46799999999999999999999988876421 1100 1157899999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|+|||||.+|..++.++++.+|++|+||||..|+.. |+++++.++...++| .|+++||||+.+.
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~-------qt~~~~~~~~~~~~p-~iv~vNK~D~~~~----- 142 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEP-------QSETVWRQADKYKVP-RIAFVNKMDRTGA----- 142 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcch-------hhHHHHHHHHHcCCC-EEEEEECCCCCCC-----
Confidence 999999999999999999999999999999999988543 999999999999999 5788999999873
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC-CccccccC--CCCC--------------------------------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG-DNMLEVSD--KMPW-------------------------------- 210 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g-~~i~~~~~--~~~w-------------------------------- 210 (459)
.+.++.+++++.+. +. .-...+|+|+..+ .++.+... ..-|
T Consensus 143 ~~~~~~~~i~~~l~---~~-~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 218 (693)
T PRK00007 143 DFYRVVEQIKDRLG---AN-PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEA 218 (693)
T ss_pred CHHHHHHHHHHHhC---CC-eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHH
Confidence 24455555554442 22 1234678887766 12211110 0011
Q ss_pred ------------ccccc-------------------cccccCCC----ChhhHHHhccccCCCCC---------------
Q psy13961 211 ------------FKGWA-------------------IERKEGKA----DGKCLIEALDAILPPSR--------------- 240 (459)
Q Consensus 211 ------------~~~~~-------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~--------------- 240 (459)
+++.. ....+|++ +...||+.|.+++|+|.
T Consensus 219 v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~ 298 (693)
T PRK00007 219 AAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEE 298 (693)
T ss_pred HHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCcccc
Confidence 00000 00012222 23789999998887552
Q ss_pred ------CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEE
Q psy13961 241 ------PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGF 310 (459)
Q Consensus 241 ------~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l 310 (459)
+.+.|+.+.|.++...++.|+++++||+||+|++||.|+....++..+|.+|... ..++++|.|||++++
T Consensus 299 ~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i 378 (693)
T PRK00007 299 EVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA 378 (693)
T ss_pred ceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEE
Confidence 1245788888888888888999999999999999999998766677888887753 578999999999987
Q ss_pred EEccCcccCcceeEEEccCC
Q psy13961 311 NVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 311 ~l~~~~~~~i~~G~vl~~~~ 330 (459)
. ++ .+++.||+|++.+
T Consensus 379 ~--gl--~~~~~GdtL~~~~ 394 (693)
T PRK00007 379 V--GL--KDTTTGDTLCDEK 394 (693)
T ss_pred e--CC--ccCCcCCEeeCCC
Confidence 4 43 4678999998754
No 46
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-34 Score=298.11 Aligned_cols=297 Identities=26% Similarity=0.276 Sum_probs=222.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....+||+++||+|||||||.++|++.+|.+.+. . ..+.| +.++|+.+.|++||+||..+..++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~--G-----~v~~g------~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKI--G-----EVHDG------AATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCC--c-----cccCC------CccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 3467899999999999999999999999988752 0 01112 567999999999999999999999999
Q ss_pred C-EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 84 K-FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 84 ~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
+ +.++|||||||.||..++.++++.+|++++|+||..|+.+ ||+..|+++...++|+ ++++||||+..
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~-------QTEtv~rqa~~~~vp~-i~fiNKmDR~~--- 142 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEP-------QTETVWRQADKYGVPR-ILFVNKMDRLG--- 142 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeee-------cHHHHHHHHhhcCCCe-EEEEECccccc---
Confidence 5 9999999999999999999999999999999999998765 9999999999999995 67789999998
Q ss_pred cHHHHHHHHHHHHhhhhhc----CcCCce-------------eeEeec-CCCCCC----------c------cccccC--
Q psy13961 163 SEARFEEIKKEVSGYIKKI----GYNPAT-------------VAFVPI-SGWHGD----------N------MLEVSD-- 206 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~----g~~~~~-------------~~~i~i-Sa~~g~----------~------i~~~~~-- 206 (459)
..|....+++...|... +..... -.+..- ++.... + +.+...
T Consensus 143 --a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~ 220 (697)
T COG0480 143 --ADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF 220 (697)
T ss_pred --cChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc
Confidence 44556666665544321 000000 000000 111110 0 000000
Q ss_pred ---CCCCc-cccc-------------------cccccCCC----ChhhHHHhccccCCCCC-------------------
Q psy13961 207 ---KMPWF-KGWA-------------------IERKEGKA----DGKCLIEALDAILPPSR------------------- 240 (459)
Q Consensus 207 ---~~~w~-~~~~-------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~------------------- 240 (459)
.+.-| +|.. ....+|++ ..+.||+++..++|.+.
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~ 300 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLR 300 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcc
Confidence 01112 1211 11223433 24889999999888651
Q ss_pred --CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEcc
Q psy13961 241 --PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 241 --~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~ 314 (459)
..+.|+.+.+.++...+..|.++++||+||+|+.||.+++...+++.+|..|... +.+++++.|||++++. |
T Consensus 301 ~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~--G 378 (697)
T COG0480 301 KASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALV--G 378 (697)
T ss_pred cCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEE--c
Confidence 2267899999999988899999999999999999999999998888999997653 5788999999999975 4
Q ss_pred CcccCcceeEEEccCC
Q psy13961 315 VSVKELRRGFVAGDSK 330 (459)
Q Consensus 315 ~~~~~i~~G~vl~~~~ 330 (459)
..+...|++||+..
T Consensus 379 --l~~~~tGdTl~~~~ 392 (697)
T COG0480 379 --LKDATTGDTLCDEN 392 (697)
T ss_pred --ccccccCCeeecCC
Confidence 46678999999876
No 47
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.3e-33 Score=290.44 Aligned_cols=296 Identities=21% Similarity=0.269 Sum_probs=214.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...+||+++||+|||||||+++|++..+.+.+... -.+++... ...+|..+.|++||+|+......+++.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~-~t~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQR-HAKSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccccc-cccCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 45689999999999999999999988888764310 01122111 2458999999999999999999999999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|+|||||.+|...+.++++.+|++|+|||+..+... +++..+..++..++| +++++||+|+..
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-------~t~~l~~~~~~~~~P-iivviNKiD~~~----- 146 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-------RTRKLMEVTRLRDTP-IFTFMNKLDRDI----- 146 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHhcCCC-EEEEEECccccC-----
Confidence 9999999999999999999999999999999999877432 888889888889999 788899999975
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC-CccccccCCCCC-c-------------------------------
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG-DNMLEVSDKMPW-F------------------------------- 211 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g-~~i~~~~~~~~w-~------------------------------- 211 (459)
..++++.++++..+....+ +. .+|+..-.. .++.+.....+| |
T Consensus 147 ~~~~~ll~~i~~~l~~~~~-~~---~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 222 (527)
T TIGR00503 147 RDPLELLDEVENELKINCA-PI---TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLA 222 (527)
T ss_pred CCHHHHHHHHHHHhCCCCc-cE---EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHH
Confidence 2345566666655542211 11 223211000 000000000000 0
Q ss_pred ----------c-------------ccccccccCCC----ChhhHHHhccccCCCCCC----------CCCCeeEEeEEEE
Q psy13961 212 ----------K-------------GWAIERKEGKA----DGKCLIEALDAILPPSRP----------TEKPLRLPLQDVY 254 (459)
Q Consensus 212 ----------~-------------~~~~~~~~~~~----~g~~Ll~~l~~~~~~~~~----------~~~p~~~~i~~v~ 254 (459)
. |.-...-+|++ +...||+.|..++|+|.. .+.+|...|.++.
T Consensus 223 ~~~~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~ 302 (527)
T TIGR00503 223 QQLRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQ 302 (527)
T ss_pred HHHHHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEE
Confidence 0 00000113433 448999999999886642 2356766666665
Q ss_pred E--e-CCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEc
Q psy13961 255 K--I-GGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAG 327 (459)
Q Consensus 255 ~--~-~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~ 327 (459)
. . ++.|++++.||+||+++.|++|+....+++.++.++.. .+.++++|.|||++++. +..+++.||+||
T Consensus 303 ~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~ 378 (527)
T TIGR00503 303 ANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFT 378 (527)
T ss_pred eccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEec
Confidence 4 3 48899999999999999999999999998899998754 36889999999999885 467899999999
Q ss_pred cCC
Q psy13961 328 DSK 330 (459)
Q Consensus 328 ~~~ 330 (459)
+.+
T Consensus 379 ~~~ 381 (527)
T TIGR00503 379 QGE 381 (527)
T ss_pred CCC
Confidence 743
No 48
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-33 Score=301.04 Aligned_cols=291 Identities=26% Similarity=0.315 Sum_probs=219.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+||+++||+|+|||||+++|++.++.+.+. .+ ...+ .+++|..++|++||+|++.....+++.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~--~~-------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 73 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKI--GE-------VHDG----AATMDWMEQEQERGITITSAATTCFWKGH 73 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcccc--cc-------ccCC----ccccCCChhHhhcCCCccceeEEEEECCE
Confidence 46899999999999999999999988776421 00 0111 57899999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|+|||||.+|..++.++++.+|++|+|||+..|.. .|+++++..+...++| +|+++||||+.+.
T Consensus 74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~-------~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~----- 140 (691)
T PRK12739 74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVE-------PQSETVWRQADKYGVP-RIVFVNKMDRIGA----- 140 (691)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----
Confidence 99999999999999999999999999999999998743 3999999999999999 6788999999863
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc-cccccC--CCCC--------------------------------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN-MLEVSD--KMPW-------------------------------- 210 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~-i~~~~~--~~~w-------------------------------- 210 (459)
.+.++.++++..+. +.+ ....+|+|+..+-+ +.+... ..-|
T Consensus 141 ~~~~~~~~i~~~l~---~~~-~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 216 (691)
T PRK12739 141 DFFRSVEQIKDRLG---ANA-VPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEA 216 (691)
T ss_pred CHHHHHHHHHHHhC---CCc-eeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHh
Confidence 34556666665543 211 12245676654421 100000 0011
Q ss_pred ------------cccccc-------------------ccccCCC----ChhhHHHhccccCCCCC---------------
Q psy13961 211 ------------FKGWAI-------------------ERKEGKA----DGKCLIEALDAILPPSR--------------- 240 (459)
Q Consensus 211 ------------~~~~~~-------------------~~~~~~~----~g~~Ll~~l~~~~~~~~--------------- 240 (459)
+++... ...+|++ +...||++|..++|++.
T Consensus 217 v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~ 296 (691)
T PRK12739 217 VAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEE 296 (691)
T ss_pred hhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcc
Confidence 111111 1112333 23889999998887642
Q ss_pred -----CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEE
Q psy13961 241 -----PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFN 311 (459)
Q Consensus 241 -----~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~ 311 (459)
+.+.|+...|.+++..++.|+++++||+||+|+.||.|+....+.+.+|.+|.. ...++++|.|||++++.
T Consensus 297 ~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 376 (691)
T PRK12739 297 IERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAV 376 (691)
T ss_pred eeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEe
Confidence 235678888888888888899999999999999999999877777788888765 35789999999999876
Q ss_pred EccCcccCcceeEEEccCC
Q psy13961 312 VKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 312 l~~~~~~~i~~G~vl~~~~ 330 (459)
++ .+++.||+|++.+
T Consensus 377 --gl--~~~~~gdtl~~~~ 391 (691)
T PRK12739 377 --GL--KDTTTGDTLCDEK 391 (691)
T ss_pred --CC--CcccCCCEEeCCC
Confidence 43 4578999998754
No 49
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.5e-33 Score=297.08 Aligned_cols=246 Identities=28% Similarity=0.370 Sum_probs=197.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++||+|||||||+++|... .+ . ....+|+|++++.+.+++.++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~--~v-------------------------~----~~e~~GIT~~iga~~v~~~~~ 337 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKT--NV-------------------------A----AGEAGGITQHIGAYQVETNGG 337 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhC--Cc-------------------------c----ccccCceeeeccEEEEEECCE
Confidence 4578999999999999999999531 11 0 112368999998888999899
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||++|..++.++++.+|++|||||+++|..+ ||.+++..+...++| +||++||||+.+ ++
T Consensus 338 ~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~-------qT~e~i~~a~~~~vP-iIVviNKiDl~~--a~-- 405 (787)
T PRK05306 338 KITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMP-------QTIEAINHAKAAGVP-IIVAINKIDKPG--AN-- 405 (787)
T ss_pred EEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCH-------hHHHHHHHHHhcCCc-EEEEEECccccc--cC--
Confidence 999999999999999999999999999999999988544 999999999999999 899999999976 22
Q ss_pred HHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc---CCCC
Q psy13961 166 RFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI---LPPS 239 (459)
Q Consensus 166 ~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~---~~~~ 239 (459)
++.+..++... ...++ .+++++|+||++|+|+ +.|+++|... +...
T Consensus 406 -~e~V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI------------------------~eLle~I~~~~e~~~l~ 457 (787)
T PRK05306 406 -PDRVKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGI------------------------DELLEAILLQAEVLELK 457 (787)
T ss_pred -HHHHHHHHHHhcccHHHhC---CCceEEEEeCCCCCCc------------------------hHHHHhhhhhhhhhhcc
Confidence 23344443321 11111 2478999999999999 5666666432 2223
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeEEEEEccCccc
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNVGFNVKNVSVK 318 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v~l~l~~~~~~ 318 (459)
.+.+.|++..|.+++..++.|++++++|.+|+|++||.|++++ ...+|++++. ++.++++|.||+.|.+. + ..
T Consensus 458 ~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--g--l~ 531 (787)
T PRK05306 458 ANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--G--LS 531 (787)
T ss_pred cCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--C--CC
Confidence 4456889999999999999999999999999999999999986 3689999987 47799999999999875 4 34
Q ss_pred Cc-ceeEEEcc
Q psy13961 319 EL-RRGFVAGD 328 (459)
Q Consensus 319 ~i-~~G~vl~~ 328 (459)
++ ..||+|+.
T Consensus 532 ~~p~~Gd~l~~ 542 (787)
T PRK05306 532 GVPQAGDEFVV 542 (787)
T ss_pred CCCCCCCEEEE
Confidence 45 78999984
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=7.1e-33 Score=296.35 Aligned_cols=291 Identities=27% Similarity=0.313 Sum_probs=218.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+||+++||+|+|||||+++|++.++.+.+. |+. ...++++|..+.|+++|+|++.....+++.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------~~~-~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~ 75 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKI------------GEV-HDGAATMDWMEQEKERGITITSAATTVFWKGH 75 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCCHHHHhcCCCEecceEEEEECCe
Confidence 45799999999999999999999988776431 000 01257899999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||.+|..++.++++.+|++|+|||+..|... ++.+++..+...++| +++++||||+...
T Consensus 76 ~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~-------~~~~~~~~~~~~~~p-~ivviNK~D~~~~----- 142 (689)
T TIGR00484 76 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQP-------QSETVWRQANRYEVP-RIAFVNKMDKTGA----- 142 (689)
T ss_pred EEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCCh-------hHHHHHHHHHHcCCC-EEEEEECCCCCCC-----
Confidence 999999999999999999999999999999999987543 889999999999999 6788999999863
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCC-ccccccCCC-CCc--------------------------------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGD-NMLEVSDKM-PWF-------------------------------- 211 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~-~i~~~~~~~-~w~-------------------------------- 211 (459)
.++++.+++...+. +.+ -...+|+|+..+. ++.+..... .||
T Consensus 143 ~~~~~~~~i~~~l~---~~~-~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 218 (689)
T TIGR00484 143 NFLRVVNQIKQRLG---ANA-VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAV 218 (689)
T ss_pred CHHHHHHHHHHHhC---CCc-eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 34555666655443 321 1236788877663 111111000 011
Q ss_pred ------------ccccc--c-----------------cccCCC----ChhhHHHhccccCCCCC----------------
Q psy13961 212 ------------KGWAI--E-----------------RKEGKA----DGKCLIEALDAILPPSR---------------- 240 (459)
Q Consensus 212 ------------~~~~~--~-----------------~~~~~~----~g~~Ll~~l~~~~~~~~---------------- 240 (459)
++... . .-+|++ +...||++|..++|+|.
T Consensus 219 ~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~ 298 (689)
T TIGR00484 219 AEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEI 298 (689)
T ss_pred HhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCcee
Confidence 11000 0 002332 23899999999887542
Q ss_pred ----CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEE
Q psy13961 241 ----PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNV 312 (459)
Q Consensus 241 ----~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l 312 (459)
+.+.|+.+.|.++...++.|.+.++||+||+|+.||.|+....+...+|.+|... ..++++|.|||++++.
T Consensus 299 ~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~- 377 (689)
T TIGR00484 299 ERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAI- 377 (689)
T ss_pred eecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEc-
Confidence 1246788888888888889999999999999999999998776667788777653 5789999999999874
Q ss_pred ccCcccCcceeEEEccCC
Q psy13961 313 KNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 313 ~~~~~~~i~~G~vl~~~~ 330 (459)
+ ..++.+||+|++.+
T Consensus 378 -g--l~~~~~gdtl~~~~ 392 (689)
T TIGR00484 378 -G--LKDTTTGDTLCDPK 392 (689)
T ss_pred -C--CCCCCCCCEEeCCC
Confidence 4 34678999998754
No 51
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=6.4e-33 Score=287.88 Aligned_cols=244 Identities=25% Similarity=0.348 Sum_probs=193.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++||+|+|||||+++|... .+ .....+|+|++...+.+++.+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~--~v-----------------------------~~~e~~GIT~~ig~~~v~~~~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKT--KV-----------------------------AQGEAGGITQHIGAYHVENEDG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhC--Cc-----------------------------ccccCCceeecceEEEEEECCC
Confidence 3568999999999999999999631 00 0112358899888888887555
Q ss_pred -EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 86 -YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 86 -~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
.++|||||||++|...+.+++..+|++|||+|+++|..+ ||.+++..++..++| +++++||+|+.+.+
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~-------qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--- 203 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMP-------QTIEAISHAKAANVP-IIVAINKIDKPEAN--- 203 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCH-------hHHHHHHHHHHcCCC-EEEEEECcccccCC---
Confidence 899999999999999999999999999999999988544 999999999999999 89999999997532
Q ss_pred HHHHHHHHHHHhhhhhcCcCC----ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc---CC
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNP----ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI---LP 237 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~----~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~---~~ 237 (459)
.+++.+.+.. .++.+ .+++++|+||++|+|+ ++|+++|... ..
T Consensus 204 --~e~v~~~L~~----~g~~~~~~~~~~~~v~iSAktGeGI------------------------~eLl~~I~~~~~~~~ 253 (587)
T TIGR00487 204 --PDRVKQELSE----YGLVPEDWGGDTIFVPVSALTGDGI------------------------DELLDMILLQSEVEE 253 (587)
T ss_pred --HHHHHHHHHH----hhhhHHhcCCCceEEEEECCCCCCh------------------------HHHHHhhhhhhhhcc
Confidence 2333333322 22211 2367999999999999 6777766432 22
Q ss_pred CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeEEEEEccCc
Q psy13961 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNVGFNVKNVS 316 (459)
Q Consensus 238 ~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v~l~l~~~~ 316 (459)
.....+.|++++|.+++..+|.|++++|+|.+|+|++||.|.++|. ..+|++|+. +...+++|.||+.|.+. |+
T Consensus 254 l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl- 328 (587)
T TIGR00487 254 LKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GL- 328 (587)
T ss_pred ccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CC-
Confidence 2234568999999999999999999999999999999999999986 578999998 67889999999999875 43
Q ss_pred ccCc-ceeEEEc
Q psy13961 317 VKEL-RRGFVAG 327 (459)
Q Consensus 317 ~~~i-~~G~vl~ 327 (459)
.++ ..||.+.
T Consensus 329 -~~~p~aGd~~~ 339 (587)
T TIGR00487 329 -SDVPAAGDEFI 339 (587)
T ss_pred -CCCCCCCCEEE
Confidence 333 6788886
No 52
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=4.9e-32 Score=290.61 Aligned_cols=291 Identities=27% Similarity=0.322 Sum_probs=211.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+||+++||+|+|||||+++|++.++.+.+.. ....+ .+.+|..+.|+++|+|+......+++.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~---------~v~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~ 73 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMG---------EVEDG----TTVTDWMPQEQERGITIESAATSCDWDNH 73 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccc---------cccCC----cccCCCCHHHHhcCCCcccceEEEEECCE
Confidence 468999999999999999999998877665320 00011 35689999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||.+|...+..+++.+|++++|+|++.+... ++.+++..+...++| +++++||+|+.. .
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~-------~~~~~~~~~~~~~~p-~iiviNK~D~~~-----~ 140 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQP-------QTETVWRQADRYGIP-RLIFINKMDRVG-----A 140 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCC-EEEEEECCCCCC-----C
Confidence 999999999999999999999999999999999987432 788899889899999 678899999987 3
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCC---C---------C---------CCccccccCCCCC--------------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISG---W---------H---------GDNMLEVSDKMPW-------------- 210 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa---~---------~---------g~~i~~~~~~~~w-------------- 210 (459)
++.+..++++..+... +..+ .+|+.. + . +..+......-.|
T Consensus 141 ~~~~~~~~i~~~l~~~---~~~~-~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 216 (687)
T PRK13351 141 DLFKVLEDIEERFGKR---PLPL-QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEA 216 (687)
T ss_pred CHHHHHHHHHHHHCCC---eEEE-EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHH
Confidence 4566666666554321 0000 111100 0 0 0000000000000
Q ss_pred ------------ccccc-------------------cccccCCC---C-hhhHHHhccccCCCCC---------------
Q psy13961 211 ------------FKGWA-------------------IERKEGKA---D-GKCLIEALDAILPPSR--------------- 240 (459)
Q Consensus 211 ------------~~~~~-------------------~~~~~~~~---~-g~~Ll~~l~~~~~~~~--------------- 240 (459)
+++.. ...-+|++ . ...||++|.+++|++.
T Consensus 217 ~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~ 296 (687)
T PRK13351 217 LAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPV 296 (687)
T ss_pred HHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCce
Confidence 00000 00112222 2 2689999999887653
Q ss_pred ----CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEE
Q psy13961 241 ----PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNV 312 (459)
Q Consensus 241 ----~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l 312 (459)
+.+.|+.+.|.+++..++.|.++++||++|+|++||.|++.+.+...+|.+|... ..++++|.|||++++.
T Consensus 297 ~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~- 375 (687)
T PRK13351 297 KVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVA- 375 (687)
T ss_pred eecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEE-
Confidence 2356889999999988889999999999999999999999988877888887543 5789999999999764
Q ss_pred ccCcccCcceeEEEccCC
Q psy13961 313 KNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 313 ~~~~~~~i~~G~vl~~~~ 330 (459)
+ ..++..|++|++..
T Consensus 376 -g--l~~~~~gdtl~~~~ 390 (687)
T PRK13351 376 -G--LKELETGDTLHDSA 390 (687)
T ss_pred -C--cccCccCCEEeCCC
Confidence 4 35677899998754
No 53
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.1e-32 Score=295.43 Aligned_cols=302 Identities=25% Similarity=0.325 Sum_probs=212.5
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeE--
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK-- 79 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~-- 79 (459)
.+....+||+++||+|+|||||+++|++.+|.+++. ..|. .+.+|..++|+++|+|++.....
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~ 78 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE----------LAGQ-----QLYLDFDEQEQERGITINAANVSMV 78 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh----------cCCc-----eeecCCCHHHHhhcchhhcccceeE
Confidence 334556899999999999999999999998887652 1121 45689999999999999877544
Q ss_pred --EeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 80 --FETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 80 --~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
+++.++.++|||||||.+|...+.++++.+|++|+|+|+..|+.. ++.+++..+...++| .++++||||+
T Consensus 79 ~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~-------~t~~~~~~~~~~~~p-~ivviNKiD~ 150 (720)
T TIGR00490 79 HEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMP-------QTETVLRQALKENVK-PVLFINKVDR 150 (720)
T ss_pred EeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCc-------cHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 677889999999999999999999999999999999999887543 899999988889999 5788999999
Q ss_pred CCCCC------cHHHHHHHHHHHHhhhhhc-C--------cCCceeeEeecCCCCCCcccccc--CC-C---CCcccccc
Q psy13961 158 TEPPY------SEARFEEIKKEVSGYIKKI-G--------YNPATVAFVPISGWHGDNMLEVS--DK-M---PWFKGWAI 216 (459)
Q Consensus 158 ~~~~~------~~~~~~~i~~~l~~~l~~~-g--------~~~~~~~~i~iSa~~g~~i~~~~--~~-~---~w~~~~~~ 216 (459)
...++ .+.+|..+...+...+... + +.+.+......|++.+....-+. .. . ..|+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 230 (720)
T TIGR00490 151 LINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKE 230 (720)
T ss_pred ccchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHh
Confidence 75322 2344444444444444321 0 00001111222333331110000 00 0 00000000
Q ss_pred ccccC--CC--ChhhHHHhccccCCCCC--------------------------CCCCCeeEEeEEEEEeCCceeEEEEE
Q psy13961 217 ERKEG--KA--DGKCLIEALDAILPPSR--------------------------PTEKPLRLPLQDVYKIGGIGTVPVGR 266 (459)
Q Consensus 217 ~~~~~--~~--~g~~Ll~~l~~~~~~~~--------------------------~~~~p~~~~i~~v~~~~~~G~v~~G~ 266 (459)
....+ .. -...||+.|..++|.|. +.+.|+...|.+++..++.|++++||
T Consensus 231 ~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~R 310 (720)
T TIGR00490 231 DKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGR 310 (720)
T ss_pred ccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEE
Confidence 00000 00 01578888888877552 12457888888888888999999999
Q ss_pred EEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEccCcccCcceeEEEccCC
Q psy13961 267 VETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 267 v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~ 330 (459)
|++|+|++||.|++.+.+...+|.+|... ..++++|.|||+|++. + ..++.+||+||+++
T Consensus 311 V~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 311 LYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVI--G--LKDAVAGETICTTV 374 (720)
T ss_pred EEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEE--C--ccccccCceeecCC
Confidence 99999999999999999989999998764 5689999999999875 4 35678999998765
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=7.3e-33 Score=250.79 Aligned_cols=184 Identities=48% Similarity=0.697 Sum_probs=159.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--e
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~ 82 (459)
|+.+||+++||+|||||||+++|++..+.+.+....+-. ...++..+.|+++|+|++.....++ +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK-------------NAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH-------------HCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccc-------------cccccccchhhhcccccccccccccccc
Confidence 578999999999999999999999999888765433200 2347889999999999999999999 9
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
..+.++|+|||||.+|.+++.++++.+|++|+|||+.+|... |+++|+.++..+++| +|||+||||+..
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~-------~~~~~l~~~~~~~~p-~ivvlNK~D~~~--- 136 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQP-------QTEEHLKILRELGIP-IIVVLNKMDLIE--- 136 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH-------HHHHHHHHHHHTT-S-EEEEEETCTSSH---
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccccc-------ccccccccccccccc-eEEeeeeccchh---
Confidence 999999999999999999999999999999999999988543 999999999999999 899999999984
Q ss_pred cHHHHHHHHHHHH-hhhhhcCcCC-ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 163 SEARFEEIKKEVS-GYIKKIGYNP-ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 163 ~~~~~~~i~~~l~-~~l~~~g~~~-~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
.++.++.+++. .+++..++.. ..++++|+||++|+|+ ..|+++|.+++|.
T Consensus 137 --~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi------------------------~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 137 --KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGI------------------------DELLEALVELLPS 188 (188)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTH------------------------HHHHHHHHHHS--
T ss_pred --hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCH------------------------HHHHHHHHHhCcC
Confidence 77788888887 6667777764 3689999999999999 8899999988773
No 55
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-33 Score=263.51 Aligned_cols=299 Identities=22% Similarity=0.284 Sum_probs=212.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++.+|+.|+|||||||.+.||...|.|...-..+ +|++-+ ....|+.+-|++|||++..+.-.|++.++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~~-~a~SDWM~iEkqRGISVtsSVMqF~Y~~~ 81 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSGK-HAKSDWMEIEKQRGISVTSSVMQFDYADC 81 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCCc-ccccHHHHHHHhcCceEEeeEEEeccCCe
Confidence 467899999999999999999998777764321111 122211 34578999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|+|||||+||...+.+.+..+|.|+.||||.+|+-+ ||+..+..|+..++| |+-++||||+...
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-------qT~KLfeVcrlR~iP-I~TFiNKlDR~~r----- 148 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-------QTLKLFEVCRLRDIP-IFTFINKLDREGR----- 148 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-------HHHHHHHHHhhcCCc-eEEEeeccccccC-----
Confidence 999999999999999999999999999999999988433 999999999999999 9999999999863
Q ss_pred HHHHHHHHHHhhhhhcCcCCceee-----------------Ee-ecCCCCC--------CccccccC--CC---------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVA-----------------FV-PISGWHG--------DNMLEVSD--KM--------- 208 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~-----------------~i-~iSa~~g--------~~i~~~~~--~~--------- 208 (459)
.--++.+++.+.|+- .+.|-++| +. ..+...+ .++..+.. ..
T Consensus 149 dP~ELLdEiE~~L~i-~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 227 (528)
T COG4108 149 DPLELLDEIEEELGI-QCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLR 227 (528)
T ss_pred ChHHHHHHHHHHhCc-ceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHH
Confidence 223344444444321 11110000 00 0111100 00100000 00
Q ss_pred ----------------CCccccccccccCCC----ChhhHHHhccccCCCCCCC----------CC---CeeEEeEEEEE
Q psy13961 209 ----------------PWFKGWAIERKEGKA----DGKCLIEALDAILPPSRPT----------EK---PLRLPLQDVYK 255 (459)
Q Consensus 209 ----------------~w~~~~~~~~~~~~~----~g~~Ll~~l~~~~~~~~~~----------~~---p~~~~i~~v~~ 255 (459)
..++|.-...-+|++ +.+.+|+.+..+.|+|... +. .|.|-|+-...
T Consensus 228 ee~EL~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMD 307 (528)
T COG4108 228 EELELVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMD 307 (528)
T ss_pred HHHHHHHhhccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCC
Confidence 001111111113444 4489999999998876432 11 24455555566
Q ss_pred eCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEccCCC
Q psy13961 256 IGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 256 ~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
.++.-++++-||.||....|+++....+++.+++..-.. .++.++.|.|||+++|. +...++.||+++..+.
T Consensus 308 p~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~Ge~ 383 (528)
T COG4108 308 PKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGEK 383 (528)
T ss_pred cccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecCce
Confidence 678899999999999999999999999999999887543 47889999999999985 4667999999997653
No 56
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-31 Score=284.89 Aligned_cols=264 Identities=26% Similarity=0.309 Sum_probs=205.0
Q ss_pred EecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEEEeC
Q psy13961 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDA 92 (459)
Q Consensus 13 ~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDt 92 (459)
+||+|+|||||+++|++.+|.+.+.. + ...+ .+++|..+.|+++|+|++.....+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~--~-------~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG--E-------VEDG----TTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc--c-------ccCC----cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999988876420 0 0011 367999999999999999999999999999999999
Q ss_pred CCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHH
Q psy13961 93 PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKK 172 (459)
Q Consensus 93 pG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~ 172 (459)
|||.+|...+.+++..+|++++|+|++.+... ++..++..+...++| +++++||+|+... .+.++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~NK~D~~~~-----~~~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVEP-------QTETVWRQAEKYGVP-RIIFVNKMDRAGA-----DFFRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCH-------HHHHHHHHHHHcCCC-EEEEEECCCCCCC-----CHHHHHH
Confidence 99999999999999999999999999887433 788888888889999 6788999999862 3444555
Q ss_pred HHHhhhhhcCcC--------------------------------------------------------------------
Q psy13961 173 EVSGYIKKIGYN-------------------------------------------------------------------- 184 (459)
Q Consensus 173 ~l~~~l~~~g~~-------------------------------------------------------------------- 184 (459)
++++.+....+.
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 555443210000
Q ss_pred -------------------CceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC-----
Q psy13961 185 -------------------PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR----- 240 (459)
Q Consensus 185 -------------------~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~----- 240 (459)
..-+|++..||++|.|+ ..||++|..++|++.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv------------------------~~LLd~i~~~lPsp~~~~~~ 270 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGV------------------------QRLLDAVVDYLPSPLEVPPV 270 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccH------------------------HHHHHHHHHHCCChhhcccc
Confidence 00011222222222222 679999998887653
Q ss_pred -------------CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEc
Q psy13961 241 -------------PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAV 303 (459)
Q Consensus 241 -------------~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~ 303 (459)
+.+.|+.+.|.+++..++.|+++++||++|+|++||.|++.+.+...+|..|.. +..++++|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~ 350 (668)
T PRK12740 271 DGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAV 350 (668)
T ss_pred cCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccC
Confidence 235678899999998889999999999999999999999999877777777654 358899999
Q ss_pred CCCeEEEEEccCcccCcceeEEEccCC
Q psy13961 304 PGDNVGFNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 304 aGd~v~l~l~~~~~~~i~~G~vl~~~~ 330 (459)
|||++++. ++ ..+++||+|++..
T Consensus 351 aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 351 AGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred CCCEEEEe--cc--CccCCCCEEeCCC
Confidence 99999986 54 4689999998654
No 57
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=3.4e-31 Score=278.29 Aligned_cols=247 Identities=23% Similarity=0.301 Sum_probs=191.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee---
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET--- 82 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--- 82 (459)
...+|+++||+|||||||+++|+..... ....+|+|+++..+.+.+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~~~~ 291 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEFEYK 291 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEEEec
Confidence 4579999999999999999999642111 122357888776665554
Q ss_pred -CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 83 -SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 83 -~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
.+..++|||||||++|..++.+++..+|++|||||+++|..+ ||.+++..+...++| +|||+||+|+.+.
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~-------QT~E~I~~~k~~~iP-iIVViNKiDl~~~- 362 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP-------QTIEAINYIQAANVP-IIVAINKIDKANA- 362 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh-------hhHHHHHHHHhcCce-EEEEEECCCcccc-
Confidence 358999999999999999999999999999999999987543 999999999999999 8999999999762
Q ss_pred CcHHHHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-
Q psy13961 162 YSEARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP- 237 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~- 237 (459)
.++++.+++..+ ...++ ..++++++||++|+|+ +.|++.|..+..
T Consensus 363 ----~~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GI------------------------deLle~I~~l~e~ 411 (742)
T CHL00189 363 ----NTERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNI------------------------DKLLETILLLAEI 411 (742)
T ss_pred ----CHHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCH------------------------HHHHHhhhhhhhh
Confidence 234444444322 11112 2468999999999999 677777755432
Q ss_pred --CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEE-eccccceeEcCCCeEEEEEcc
Q psy13961 238 --PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVE-MHHEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 238 --~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~-~~~~~v~~a~aGd~v~l~l~~ 314 (459)
.....+.|+...|.+++..++.|++++|+|.+|+|++||.|+++|. ..+|+++. .+..++.+|.||+.|.+. +
T Consensus 412 ~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~--~gkVr~m~~~~~~~v~~a~pgdiV~I~--g 487 (742)
T CHL00189 412 EDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTS--YAKIRGMINSLGNKINLATPSSVVEIW--G 487 (742)
T ss_pred hcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCc--ceEEEEEEcCCCcCccEEcCCCceEec--C
Confidence 2223456788888888888899999999999999999999999984 57899987 457899999999999763 4
Q ss_pred CcccCcceeEEEcc
Q psy13961 315 VSVKELRRGFVAGD 328 (459)
Q Consensus 315 ~~~~~i~~G~vl~~ 328 (459)
++ .....||++.-
T Consensus 488 l~-~~~~~Gd~l~v 500 (742)
T CHL00189 488 LS-SVPATGEHFQV 500 (742)
T ss_pred cc-cCCCCCCEEEE
Confidence 31 34567888753
No 58
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.98 E-value=3.8e-31 Score=287.32 Aligned_cols=301 Identities=24% Similarity=0.327 Sum_probs=205.3
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
+....+||+++||+|||||||+++|++..+.+++.. .| ..+++|..++|++||+|++.+...+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLYY 79 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEEe
Confidence 345678999999999999999999999998876531 11 256789999999999999987766665
Q ss_pred C----------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCc
Q psy13961 83 S----------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 146 (459)
Q Consensus 83 ~----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip 146 (459)
. ++.++|||||||.+|..++.++++.+|++|+||||.+|+.. ||+.++..+...++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-------~t~~~~~~~~~~~~p 152 (843)
T PLN00116 80 EMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERIR 152 (843)
T ss_pred ecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-------cHHHHHHHHHHCCCC
Confidence 3 67899999999999999999999999999999999988644 999999999999999
Q ss_pred eEEEEEEccCCCCCCC------cHHHHHHHHHHHHhhhhhcC--------cCCceeeEeecCCCCCCcccccc-------
Q psy13961 147 QLIVGVNKMDSTEPPY------SEARFEEIKKEVSGYIKKIG--------YNPATVAFVPISGWHGDNMLEVS------- 205 (459)
Q Consensus 147 ~iivviNK~D~~~~~~------~~~~~~~i~~~l~~~l~~~g--------~~~~~~~~i~iSa~~g~~i~~~~------- 205 (459)
+|+++||||+.-.++ ...+++++.++++.++..++ +.|..-.+++.|+..|..+.-+.
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~ 231 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHH
Confidence 688899999983111 12677888888874443332 11111122333443321110000
Q ss_pred ---------CCCCC----------------------------------------------------ccccccccc-----
Q psy13961 206 ---------DKMPW----------------------------------------------------FKGWAIERK----- 219 (459)
Q Consensus 206 ---------~~~~w----------------------------------------------------~~~~~~~~~----- 219 (459)
...-| ++++..+..
T Consensus 232 ~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~ 311 (843)
T PLN00116 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKE 311 (843)
T ss_pred HhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHh
Confidence 00000 000000000
Q ss_pred -------cC-----CCChhhHHHhccccCCCCC--------------------------CCCCCeeEEeEEEEEeCCcee
Q psy13961 220 -------EG-----KADGKCLIEALDAILPPSR--------------------------PTEKPLRLPLQDVYKIGGIGT 261 (459)
Q Consensus 220 -------~~-----~~~g~~Ll~~l~~~~~~~~--------------------------~~~~p~~~~i~~v~~~~~~G~ 261 (459)
.+ -.....||+.+.+++|.+. +.+.|+...|.+++..+..|.
T Consensus 312 ~~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~ 391 (843)
T PLN00116 312 LMGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
T ss_pred hhhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCe
Confidence 00 0011678888888777552 113467777777766666677
Q ss_pred -EEEEEEEeeeEecCCeEEEecCC----eE-----EEEEEEEe----ccccceeEcCCCeEEEEEccCcccC-cceeEEE
Q psy13961 262 -VPVGRVETGVIKPGMLVTFAPAN----LT-----TEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKE-LRRGFVA 326 (459)
Q Consensus 262 -v~~G~v~sG~l~~gd~v~~~p~~----~~-----~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~-i~~G~vl 326 (459)
++++||+||+|+.||.|++...+ .. .+|..|.. ...++++|.|||++++. ++ .+ +.+|++|
T Consensus 392 ~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl--~~~~~~gdTL 467 (843)
T PLN00116 392 FFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GL--DQFITKNATL 467 (843)
T ss_pred EEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--ee--cccccCCcee
Confidence 88999999999999999854322 11 35555543 24788999999999875 42 33 4459999
Q ss_pred ccCC
Q psy13961 327 GDSK 330 (459)
Q Consensus 327 ~~~~ 330 (459)
++..
T Consensus 468 ~~~~ 471 (843)
T PLN00116 468 TNEK 471 (843)
T ss_pred cCCc
Confidence 8654
No 59
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=4.6e-30 Score=267.30 Aligned_cols=205 Identities=24% Similarity=0.327 Sum_probs=158.5
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc---
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS--- 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~--- 163 (459)
++|||||||++|...+.++++.+|+++||+|+++|.. +|+.+++.+++..++| +++++||+|+.. .|.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~-------~qt~e~i~~~~~~~vp-iIvviNK~D~~~-~~~~~~ 143 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQ-------PQTIEAINILKRRKTP-FVVAANKIDRIP-GWKSTE 143 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcCCch-hhhhhc
Confidence 7999999999999999999999999999999998743 3999999999999999 899999999863 254
Q ss_pred ---------------HHHHHHHHHHHHhhhhhcCcCC----------ceeeEeecCCCCCCccccccCCCCCcccccccc
Q psy13961 164 ---------------EARFEEIKKEVSGYIKKIGYNP----------ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIER 218 (459)
Q Consensus 164 ---------------~~~~~~i~~~l~~~l~~~g~~~----------~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~ 218 (459)
+..|++...++...|...|+.+ .+++++|+||++|+|+
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi----------------- 206 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGI----------------- 206 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCCh-----------------
Confidence 3445556666666677677654 3578999999999999
Q ss_pred ccCCCChhhHHHhccc----cCC--CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe--EEEEE
Q psy13961 219 KEGKADGKCLIEALDA----ILP--PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL--TTEVK 290 (459)
Q Consensus 219 ~~~~~~g~~Ll~~l~~----~~~--~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~--~~~V~ 290 (459)
++|++.+.. +++ -..+.+.|++++|.+++..+|.|++++|+|.+|+|++||.|.++|.+. .++|+
T Consensus 207 -------~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr 279 (586)
T PRK04004 207 -------PDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVR 279 (586)
T ss_pred -------HHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEE
Confidence 556655532 222 123457899999999999999999999999999999999999999873 56999
Q ss_pred EEEec------------cccceeEcCCCeEEEEEccCcccCcceeEEE
Q psy13961 291 SVEMH------------HEALQEAVPGDNVGFNVKNVSVKELRRGFVA 326 (459)
Q Consensus 291 ~I~~~------------~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl 326 (459)
+|..+ ...+++|.|..-|.+...++ .++..|+-+
T Consensus 280 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl--~~~~~g~~~ 325 (586)
T PRK04004 280 ALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDL--EDALAGSPL 325 (586)
T ss_pred EEecCcchhhccccccccccccccCCCCceEEEeCCc--cccCCCCeE
Confidence 99875 24566666766565533343 233445443
No 60
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=1.3e-29 Score=262.58 Aligned_cols=254 Identities=23% Similarity=0.311 Sum_probs=177.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC---
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--- 83 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--- 83 (459)
...|+++||+|||||||+++|+...-.. ....|+|.+++...+.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-------------------------------~e~ggiTq~iG~~~v~~~~~~ 52 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-------------------------------REAGGITQHIGATEIPMDVIE 52 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-------------------------------ccCCceecccCeeEeeecccc
Confidence 3469999999999999999997431100 011234443333222211
Q ss_pred ---------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceE
Q psy13961 84 ---------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 148 (459)
Q Consensus 84 ---------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~i 148 (459)
...++|||||||++|...+.++++.+|+++||+|+++|..+ |+.+++..++..++| +
T Consensus 53 ~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~-------qt~e~i~~l~~~~vp-i 124 (590)
T TIGR00491 53 GICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKP-------QTQEALNILRMYKTP-F 124 (590)
T ss_pred ccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCH-------hHHHHHHHHHHcCCC-E
Confidence 12489999999999999999999999999999999987433 899999999999999 8
Q ss_pred EEEEEccCCCCCCCcHH------------------HHHHHHHHHHhhhhhcCcCC----------ceeeEeecCCCCCCc
Q psy13961 149 IVGVNKMDSTEPPYSEA------------------RFEEIKKEVSGYIKKIGYNP----------ATVAFVPISGWHGDN 200 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~------------------~~~~i~~~l~~~l~~~g~~~----------~~~~~i~iSa~~g~~ 200 (459)
++++||+|+.+ .|... .+++....+...+...|+.. .+++++|+||++|+|
T Consensus 125 IVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG 203 (590)
T TIGR00491 125 VVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG 203 (590)
T ss_pred EEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence 99999999974 24210 11111111222334445543 257999999999999
Q ss_pred cccccCCCCCccccccccccCCCChhhHHHhcccc----CC--CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEec
Q psy13961 201 MLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI----LP--PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKP 274 (459)
Q Consensus 201 i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~----~~--~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~ 274 (459)
+ ++|+++|..+ ++ -..+.+.|++++|.++|..+|.|++++|+|.+|+|++
T Consensus 204 i------------------------deLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~ 259 (590)
T TIGR00491 204 I------------------------PELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRK 259 (590)
T ss_pred h------------------------hHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeC
Confidence 9 5666665422 21 1234578999999999999999999999999999999
Q ss_pred CCeEEEecCCe--EEEEEEEEecc------------ccceeEcCCCeEEEEEccCcccCcceeEEE
Q psy13961 275 GMLVTFAPANL--TTEVKSVEMHH------------EALQEAVPGDNVGFNVKNVSVKELRRGFVA 326 (459)
Q Consensus 275 gd~v~~~p~~~--~~~V~~I~~~~------------~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl 326 (459)
||.|.++|.+. ..+|++|...+ ..+.++.|..-+-+...+++ ....|+.+
T Consensus 260 GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~--~~~aG~~~ 323 (590)
T TIGR00491 260 GDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLD--DVMAGSPI 323 (590)
T ss_pred CCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCC--CCCCCCEE
Confidence 99999999863 67899987543 24556555554555444432 23455544
No 61
>PTZ00416 elongation factor 2; Provisional
Probab=99.97 E-value=1.4e-29 Score=274.50 Aligned_cols=301 Identities=24% Similarity=0.314 Sum_probs=206.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....+||+++||+|||||||+++|++.++.+++. ..|. .+++|..++|++||+|++.+...+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAGD-----ARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eeecccchhhHhhcceeeccceEEEee
Confidence 4456799999999999999999999988887643 1221 456899999999999999877666664
Q ss_pred ----------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 84 ----------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 84 ----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
++.++|+|||||.+|..++.++++.+|++|+|||+..|+.. |++.++..+...++| +|+++|
T Consensus 81 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~-------~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 81 HDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV-------QTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred cccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCc-------cHHHHHHHHHHcCCC-EEEEEE
Confidence 67899999999999999999999999999999999988544 999999999999999 788899
Q ss_pred ccCCCCCCC------cHHHHHHHHHHHHhhhhhc--------CcCCceeeEeecCCCCCCcccc----------------
Q psy13961 154 KMDSTEPPY------SEARFEEIKKEVSGYIKKI--------GYNPATVAFVPISGWHGDNMLE---------------- 203 (459)
Q Consensus 154 K~D~~~~~~------~~~~~~~i~~~l~~~l~~~--------g~~~~~~~~i~iSa~~g~~i~~---------------- 203 (459)
|||+.-.++ ...+++.+.++++..+..+ .+.|....+...|+..|....-
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~ 232 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEES 232 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHH
Confidence 999972111 1367888888888776532 2222222233334432211100
Q ss_pred ccCCCCC----ccc--c--ccc---------------------------c-----------cc--CC--------CC---
Q psy13961 204 VSDKMPW----FKG--W--AIE---------------------------R-----------KE--GK--------AD--- 224 (459)
Q Consensus 204 ~~~~~~w----~~~--~--~~~---------------------------~-----------~~--~~--------~~--- 224 (459)
.....-| |.. . ... . .+ +. ..
T Consensus 233 ~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~ 312 (836)
T PTZ00416 233 KMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKP 312 (836)
T ss_pred HHHHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHH
Confidence 0000011 000 0 000 0 00 00 00
Q ss_pred ------------hhhHHHhccccCCCCCC--------------------------CCCCeeEEeEEEEEeCCcee-EEEE
Q psy13961 225 ------------GKCLIEALDAILPPSRP--------------------------TEKPLRLPLQDVYKIGGIGT-VPVG 265 (459)
Q Consensus 225 ------------g~~Ll~~l~~~~~~~~~--------------------------~~~p~~~~i~~v~~~~~~G~-v~~G 265 (459)
.+.||+++..++|.|.. .+.|+...|..++..++.|+ +.++
T Consensus 313 l~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~ 392 (836)
T PTZ00416 313 LLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFG 392 (836)
T ss_pred HHHHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEE
Confidence 14678888777775521 12356666666666677888 7899
Q ss_pred EEEeeeEecCCeEEEecCC----eEE-----EEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEccCC
Q psy13961 266 RVETGVIKPGMLVTFAPAN----LTT-----EVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 266 ~v~sG~l~~gd~v~~~p~~----~~~-----~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~ 330 (459)
||+||+|+.||.|++...+ .+. +|..|.. ...++++|.|||++++. +++..-.+.| +|++..
T Consensus 393 RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 393 RVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred EEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 9999999999999854332 122 3666654 35789999999999885 4322226789 887655
No 62
>KOG0466|consensus
Probab=99.97 E-value=3.8e-31 Score=241.02 Aligned_cols=343 Identities=24% Similarity=0.365 Sum_probs=261.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-- 82 (459)
...+||+.+||+-+||||++.++.. + .+-+++.|-+|.+||.++|+....
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSG----v------------------------~TvrFK~ELERNITIKLGYANAKIYk 87 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISG----V------------------------HTVRFKNELERNITIKLGYANAKIYK 87 (466)
T ss_pred eeeeeecceeccccCcceeeeeecc----c------------------------eEEEehhhhhcceeEEeccccceEEe
Confidence 3468999999999999999998841 1 133456677888999887654211
Q ss_pred -----------------------------------CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccc
Q psy13961 83 -----------------------------------SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 127 (459)
Q Consensus 83 -----------------------------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~ 127 (459)
--+.+.|+|+|||.-.+.+|+.|+...|+++|+|.+++.
T Consensus 88 c~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEs------ 161 (466)
T KOG0466|consen 88 CDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------ 161 (466)
T ss_pred cCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCC------
Confidence 015789999999999999999999999999999999764
Q ss_pred cCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCC
Q psy13961 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK 207 (459)
Q Consensus 128 ~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~ 207 (459)
++++||.||+.....+.++|++++-||+|+... ....+-.+++..|++. -..+..|++|+||.-+.|+
T Consensus 162 CPQPQTsEHLaaveiM~LkhiiilQNKiDli~e----~~A~eq~e~I~kFi~~--t~ae~aPiiPisAQlkyNI------ 229 (466)
T KOG0466|consen 162 CPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE----SQALEQHEQIQKFIQG--TVAEGAPIIPISAQLKYNI------ 229 (466)
T ss_pred CCCCchhhHHHHHHHhhhceEEEEechhhhhhH----HHHHHHHHHHHHHHhc--cccCCCceeeehhhhccCh------
Confidence 347899999999999999999999999999974 2233334555556553 3336679999999999999
Q ss_pred CCCccccccccccCCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeC--C------ceeEEEEEEEeeeEecCCeE
Q psy13961 208 MPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIG--G------IGTVPVGRVETGVIKPGMLV 278 (459)
Q Consensus 208 ~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~--~------~G~v~~G~v~sG~l~~gd~v 278 (459)
+.++++|.+..| |.++...|.+|.|.+.|.+. | .|-|..|.+..|.|++||.+
T Consensus 230 ------------------d~v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~I 291 (466)
T KOG0466|consen 230 ------------------DVVCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEI 291 (466)
T ss_pred ------------------HHHHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEE
Confidence 889999977655 77888899999999999874 2 37789999999999999999
Q ss_pred EEecCCe------E-------EEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEE
Q psy13961 279 TFAPANL------T-------TEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTA 342 (459)
Q Consensus 279 ~~~p~~~------~-------~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a 342 (459)
.+.|+-. . .+|.++...+.+++.|.||..+++..+ .+...|-..|.||+.-.. .|....+++.
T Consensus 292 EiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~-LP~if~elei 370 (466)
T KOG0466|consen 292 EIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGT-LPDIFTELEI 370 (466)
T ss_pred EecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccC-CccceeEEEe
Confidence 9999631 1 234444556788899999999998743 122334556888887554 6677888888
Q ss_pred EEEEecCC--------------CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCC
Q psy13961 343 QVIVLNHP--------------GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSK 408 (459)
Q Consensus 343 ~i~~l~~~--------------~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~ 408 (459)
..++|..- ..+.+|...++.+|+...-+++..+... .+++.|..
T Consensus 371 ~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~d----------------------~~k~~Lt~ 428 (466)
T KOG0466|consen 371 SYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKAD----------------------MAKIQLTS 428 (466)
T ss_pred ehhhhhHHhccccccccccchhhhcccCcEEEEEecccccCceEEEEecc----------------------eeeeEecC
Confidence 88776531 2467788888999998888888877431 34578899
Q ss_pred eEEeeecCCCCCcceEEEEEC--C--ceEEEEEEEe
Q psy13961 409 PMCVESFSEFPPLGRFAVRDM--R--QTVAVGVIKV 440 (459)
Q Consensus 409 ~i~~~~~~~~~~~grfilrd~--~--~tva~G~V~~ 440 (459)
|+|.|..+ ++.|-.. + +.||.|.|.+
T Consensus 429 P~CteigE------kiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 429 PVCTEIGE------KIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred chhcccch------hhhhhhhhhhheEEecceeEeC
Confidence 99988765 4444222 1 6888888864
No 63
>KOG1145|consensus
Probab=99.97 E-value=7.6e-30 Score=249.16 Aligned_cols=233 Identities=27% Similarity=0.376 Sum_probs=188.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~ 84 (459)
.+..|.++||+|||||||+..|-... +. + .-..|||..++.+.+.. ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~--VA----------A-------------------~E~GGITQhIGAF~V~~p~G 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSS--VA----------A-------------------GEAGGITQHIGAFTVTLPSG 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCc--ee----------h-------------------hhcCCccceeceEEEecCCC
Confidence 45689999999999999999994211 00 0 01248999888776553 67
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
..++|+|||||.-|..+..+|+..+|+++|||.|++|+++ ||.|.+..++..++| +||++||+|.++
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp-------QT~EaIkhAk~A~Vp-iVvAinKiDkp~----- 267 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP-------QTLEAIKHAKSANVP-IVVAINKIDKPG----- 267 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH-------hHHHHHHHHHhcCCC-EEEEEeccCCCC-----
Confidence 8999999999999999999999999999999999999876 999999999999999 999999999987
Q ss_pred HHHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccc---cCCC
Q psy13961 165 ARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDA---ILPP 238 (459)
Q Consensus 165 ~~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~---~~~~ 238 (459)
...+.+.++|... ++.+| .+++++|+||++|+|+ +.|.+++.- .+.-
T Consensus 268 a~pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl------------------------~~L~eaill~Ae~mdL 320 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENL------------------------DLLEEAILLLAEVMDL 320 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcC---CceeEEEeecccCCCh------------------------HHHHHHHHHHHHHhhc
Confidence 4456666665432 12333 5789999999999999 666666532 2223
Q ss_pred CCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeEEEE
Q psy13961 239 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNVGFN 311 (459)
Q Consensus 239 ~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v~l~ 311 (459)
......|+...|-+..-.+++|.+.+.-|..|+|++|+.+..+-+ -.+|+.+.- +..++++|.|++-|.+.
T Consensus 321 kA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~--w~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 321 KADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKS--WCKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred ccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEech--hhhhhhhhhcCCCCccccCCCCceEee
Confidence 334568889999999999999999999999999999999988876 678889664 56899999999988764
No 64
>KOG0465|consensus
Probab=99.97 E-value=3.1e-30 Score=254.54 Aligned_cols=292 Identities=25% Similarity=0.307 Sum_probs=203.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.+||++..|.|||||||.+++++..|.+..-. ..++. ...||..+.||+||+|++.+..++.|.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~----------ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG----------EVRGG---GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeecc----------ccccC---ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 3568999999999999999999999887664320 11111 5679999999999999999999999999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
++++|||||||.||..++.++++..|++|+|+|+..|+.. ||...+.+++..++|+ |.++||||+...+
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqs-------Qt~tV~rQ~~ry~vP~-i~FiNKmDRmGa~--- 172 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVES-------QTETVWRQMKRYNVPR-ICFINKMDRMGAS--- 172 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceeh-------hhHHHHHHHHhcCCCe-EEEEehhhhcCCC---
Confidence 9999999999999999999999999999999999988644 9999999999999995 6668999998742
Q ss_pred HHHHHHHHHHHhhhhh------cCcCCce----------eeEeecCCCCCCcccccc-----------------------
Q psy13961 165 ARFEEIKKEVSGYIKK------IGYNPAT----------VAFVPISGWHGDNMLEVS----------------------- 205 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~------~g~~~~~----------~~~i~iSa~~g~~i~~~~----------------------- 205 (459)
+....+.+..-|.. +.+..+. -.-+....-.|..+....
T Consensus 173 --~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 173 --PFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred --hHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 23333333322210 0000000 000111111111110000
Q ss_pred C--CCCCc-cccc-------------------cccccCCC----ChhhHHHhccccCCCCCC------------------
Q psy13961 206 D--KMPWF-KGWA-------------------IERKEGKA----DGKCLIEALDAILPPSRP------------------ 241 (459)
Q Consensus 206 ~--~~~w~-~~~~-------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~~------------------ 241 (459)
+ .++-| +... +...+|++ +.+.||+++.+++|.|..
T Consensus 251 DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l 330 (721)
T KOG0465|consen 251 DETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTL 330 (721)
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEe
Confidence 0 00000 0000 00112322 348999999999886520
Q ss_pred ---CCC-CeeEEeEEEEEeC--CceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEE-ec---cccceeEcCCCeEEEE
Q psy13961 242 ---TEK-PLRLPLQDVYKIG--GIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVE-MH---HEALQEAVPGDNVGFN 311 (459)
Q Consensus 242 ---~~~-p~~~~i~~v~~~~--~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~-~~---~~~v~~a~aGd~v~l~ 311 (459)
.++ ||. .-.|++. ..|...+.||++|+|+.||.|+...+++++++..+. +| .++|+++.|||++++.
T Consensus 331 ~~~~d~~Pfv---~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alf 407 (721)
T KOG0465|consen 331 SPSRDKDPFV---ALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALF 407 (721)
T ss_pred ccCCCCCcee---eeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeee
Confidence 112 443 3445542 238898999999999999999999999999998854 33 4789999999999864
Q ss_pred EccCcccCcceeEEEccCC
Q psy13961 312 VKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 312 l~~~~~~~i~~G~vl~~~~ 330 (459)
|+ +...||++.+..
T Consensus 408 --Gi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 408 --GI---DCASGDTFTDKQ 421 (721)
T ss_pred --cc---ccccCceeccCc
Confidence 54 789999999864
No 65
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.8e-29 Score=246.44 Aligned_cols=229 Identities=31% Similarity=0.439 Sum_probs=180.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
.+.-|+++||+|||||||+..+-.. . +. ..-..|+|..++.+.+.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t-~-Va-----------------------------~~EaGGITQhIGA~~v~~~~~ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKT-N-VA-----------------------------AGEAGGITQHIGAYQVPLDVI 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcC-c-cc-----------------------------cccCCceeeEeeeEEEEeccC
Confidence 3457899999999999999998421 1 10 0112589999999988874
Q ss_pred -CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 84 -KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
...++|+|||||+-|..+..+|.+.+|++|||||+++|.++ ||.|.+..+++.++| ++|++||||+++
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~p-------QTiEAI~hak~a~vP-~iVAiNKiDk~~--- 121 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMP-------QTIEAINHAKAAGVP-IVVAINKIDKPE--- 121 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcch-------hHHHHHHHHHHCCCC-EEEEEecccCCC---
Confidence 47999999999999999999999999999999999998665 999999999999999 999999999997
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCC----ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc---
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNP----ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI--- 235 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~----~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~--- 235 (459)
...+.+..++++. |+.+ ..+.|+|+||++|+|+ ++||+.+.-+
T Consensus 122 --~np~~v~~el~~~----gl~~E~~gg~v~~VpvSA~tg~Gi------------------------~eLL~~ill~aev 171 (509)
T COG0532 122 --ANPDKVKQELQEY----GLVPEEWGGDVIFVPVSAKTGEGI------------------------DELLELILLLAEV 171 (509)
T ss_pred --CCHHHHHHHHHHc----CCCHhhcCCceEEEEeeccCCCCH------------------------HHHHHHHHHHHHH
Confidence 3445555555443 5543 3478999999999999 7787776432
Q ss_pred CCCCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeE
Q psy13961 236 LPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNV 308 (459)
Q Consensus 236 ~~~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v 308 (459)
..-....+.+.+-.|.++...+|.|.+++--|..|+|++||.|.++... .+|+.+.. ...+++.+.++.-+
T Consensus 172 ~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v~~~~~~i~~a~ps~~v 243 (509)
T COG0532 172 LELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEY--GRVRTMVDDLGKPIKEAGPSKPV 243 (509)
T ss_pred HhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCC--CceEEeehhcCCCccccCCCCCe
Confidence 2223345678889999999999999999999999999999999998763 45555433 34555556555433
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=2.3e-28 Score=225.02 Aligned_cols=203 Identities=27% Similarity=0.319 Sum_probs=152.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC----
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---- 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---- 83 (459)
+||+++||+|||||||+++|++..+.++++. .+. .+++|..+.|++||+|+..+...+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999888776431 122 467999999999999998876555443
Q ss_pred ------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 84 ------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
++.++|||||||.+|..++..+++.+|++++|||+.+|... |+++++..+...++| +++|+||||+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~-------~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCV-------QTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 78999999999999999999999999999999999988543 899999999888999 8899999998
Q ss_pred C------CCCCcHHHHHHHHHHHHhhhhhcCcCCc---eeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhH
Q psy13961 158 T------EPPYSEARFEEIKKEVSGYIKKIGYNPA---TVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCL 228 (459)
Q Consensus 158 ~------~~~~~~~~~~~i~~~l~~~l~~~g~~~~---~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~L 228 (459)
. ++++.+.++.++.+++..+++.+.-... .-.-.++|...| |+...|....|.-... ..+....|
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~g-nv~f~S~~~gw~f~~~-----~f~~~~~~ 211 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKG-NVAFGSALHGWGFTII-----KFARIYAV 211 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCC-cEEEEecccCEEeccc-----cccchHHH
Confidence 6 3446678888999999988877632100 000123444444 5555566556643221 11123678
Q ss_pred HHhccccCCCC
Q psy13961 229 IEALDAILPPS 239 (459)
Q Consensus 229 l~~l~~~~~~~ 239 (459)
++.+.+..|+|
T Consensus 212 ~~~~~~~~~~p 222 (222)
T cd01885 212 LEMVVKHLPSP 222 (222)
T ss_pred HHHHHhhCCCC
Confidence 88888877764
No 67
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.94 E-value=2.6e-25 Score=240.66 Aligned_cols=225 Identities=22% Similarity=0.283 Sum_probs=168.6
Q ss_pred HhcCceEEeeeeEEeeCC------------------EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceecccc
Q psy13961 67 RERGITIDIALWKFETSK------------------FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128 (459)
Q Consensus 67 ~~~g~Ti~~~~~~~~~~~------------------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~ 128 (459)
-..|||++++.+.+..+. ..++|||||||++|...+.++++.+|++++|+|+++|..
T Consensus 490 EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~----- 564 (1049)
T PRK14845 490 EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFK----- 564 (1049)
T ss_pred cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCC-----
Confidence 346999999887776542 138999999999999888888999999999999987743
Q ss_pred CCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc---------------HHHHHHHHHHHHh---hhhhcCcCC-----
Q psy13961 129 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS---------------EARFEEIKKEVSG---YIKKIGYNP----- 185 (459)
Q Consensus 129 ~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~---------------~~~~~~i~~~l~~---~l~~~g~~~----- 185 (459)
+|+.+++..++..++| +++|+||+|+.. .|. +..++++.+.+.+ .|...|+.+
T Consensus 565 --~qT~e~I~~lk~~~iP-iIVViNKiDL~~-~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~ 640 (1049)
T PRK14845 565 --PQTIEAINILRQYKTP-FVVAANKIDLIP-GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDR 640 (1049)
T ss_pred --HhHHHHHHHHHHcCCC-EEEEEECCCCcc-ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhh
Confidence 3999999999999999 899999999974 254 1122333222222 245556543
Q ss_pred -----ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC------CCCCCCCCeeEEeEEEE
Q psy13961 186 -----ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP------PSRPTEKPLRLPLQDVY 254 (459)
Q Consensus 186 -----~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~------~~~~~~~p~~~~i~~v~ 254 (459)
..++++|+||++|+|+ +.|+++|..+.+ .....+.|++++|.++|
T Consensus 641 ~~d~~~~v~iVpVSA~tGeGI------------------------d~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~ 696 (1049)
T PRK14845 641 VQDFTRTVAIVPVSAKTGEGI------------------------PELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVK 696 (1049)
T ss_pred hhhcCCCceEEEEEcCCCCCH------------------------HHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEE
Confidence 3579999999999999 677777754332 12235689999999999
Q ss_pred EeCCceeEEEEEEEeeeEecCCeEEEecCCe--EEEEEEEEec------------cccceeEcCCCeEEEEEccCcccCc
Q psy13961 255 KIGGIGTVPVGRVETGVIKPGMLVTFAPANL--TTEVKSVEMH------------HEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 255 ~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~--~~~V~~I~~~------------~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
.++|.|++++|.|.+|+|++||.|.++|.+. ..+|+++... ..++++|.|+.-|.+...|+ ..+
T Consensus 697 ~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl--~~~ 774 (1049)
T PRK14845 697 EEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGL--EEV 774 (1049)
T ss_pred EecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCc--ccc
Confidence 9999999999999999999999999999764 6899998631 23567777777676654443 233
Q ss_pred ceeEEE
Q psy13961 321 RRGFVA 326 (459)
Q Consensus 321 ~~G~vl 326 (459)
..|+-+
T Consensus 775 ~aG~~~ 780 (1049)
T PRK14845 775 LAGSPI 780 (1049)
T ss_pred CCCCeE
Confidence 556554
No 68
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=9.4e-26 Score=204.98 Aligned_cols=174 Identities=30% Similarity=0.460 Sum_probs=135.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC----
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---- 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---- 83 (459)
+||+++||+|+|||||+++|+...+ .+.++....|+++|+|++..+..+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999974311 123677788999999999988777665
Q ss_pred ----------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 84 ----------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 84 ----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
++.++|||||||.+|...+..++..+|++++|+|+..+... ++.+++.++...+.| +++++|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~-------~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQT-------QTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccH-------HHHHHHHHHHHcCCC-EEEEEE
Confidence 67999999999999999999988999999999999876432 677777777777888 888899
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALD 233 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~ 233 (459)
|+|+....+.+..++++.+.+...+...++ ..++++++||++|+|+ ++|++.|.
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi------------------------~~L~~~l~ 182 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGE------------------------AELGKDLN 182 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCH------------------------HHHHHHHH
Confidence 999985322222344444444444433333 3578999999999999 88999998
Q ss_pred ccCCCC
Q psy13961 234 AILPPS 239 (459)
Q Consensus 234 ~~~~~~ 239 (459)
+..|+|
T Consensus 183 ~~~~~~ 188 (192)
T cd01889 183 NLIVLP 188 (192)
T ss_pred hccccc
Confidence 877664
No 69
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.94 E-value=6.8e-26 Score=207.48 Aligned_cols=167 Identities=30% Similarity=0.373 Sum_probs=132.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC----
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---- 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---- 83 (459)
+||+++||+|||||||+++|.. ..+|..+.|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 5899999999999999999941 12567778888999998887666543
Q ss_pred -----------------------C------EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH
Q psy13961 84 -----------------------K------FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 134 (459)
Q Consensus 84 -----------------------~------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~ 134 (459)
+ +.++|||||||++|...+.+++..+|++++|+|++.+.. ..++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~------~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP------QPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC------CcchH
Confidence 3 789999999999999999999999999999999986421 12788
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCcccc
Q psy13961 135 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGW 214 (459)
Q Consensus 135 e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~ 214 (459)
+++..+...+++++++++||+|+.+. ..+....++++.+++.... ..++++++||++|+|+
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~~~----~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi------------- 187 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLVKE----EQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNI------------- 187 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhccCH----HHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCH-------------
Confidence 89988888888768989999999752 3344445556655543322 3467999999999999
Q ss_pred ccccccCCCChhhHHHhccccCCC
Q psy13961 215 AIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 215 ~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
+.|++.|.+.+|.
T Consensus 188 -----------~~L~~~l~~~l~~ 200 (203)
T cd01888 188 -----------DVLLEYIVKKIPT 200 (203)
T ss_pred -----------HHHHHHHHHhCCC
Confidence 7899999887654
No 70
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.93 E-value=2.9e-25 Score=204.97 Aligned_cols=201 Identities=24% Similarity=0.327 Sum_probs=154.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-----
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET----- 82 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----- 82 (459)
+||+++||+|+|||||+++|++..+.+.+. |+.....++++|..++|+++|+|+......+.+
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 589999999999999999999887766531 333444567789999999999999887766643
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC--
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP-- 160 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~-- 160 (459)
..+.+++||||||.+|...+..++..+|++++|+|+..+... ++.+++..+...++| +++++||+|++..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~-------~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTS-------NTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 347899999999999999999999999999999999876322 666777777777888 8889999998621
Q ss_pred ----CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC
Q psy13961 161 ----PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 161 ----~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
.+...++.++++++..+++.+++++ .+.|+|++ .|+.+.+..++|+-....- +.-..|++.|....
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~~----~nv~~~s~~~~w~~~~~~~-----~~~~~~~~~~~~~~ 210 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPEN----GNVCFASSKFGFCFTLESF-----AKKYGLVDSIVSNI 210 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccCC----CeEEEEecCCCeEEecHHH-----HhhhhHHHHHHhhC
Confidence 1234678888888888888888764 46788885 6898889899998532211 01146777776655
Q ss_pred CC
Q psy13961 237 PP 238 (459)
Q Consensus 237 ~~ 238 (459)
|.
T Consensus 211 ~~ 212 (213)
T cd04167 211 PS 212 (213)
T ss_pred CC
Confidence 43
No 71
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=1.8e-25 Score=212.29 Aligned_cols=160 Identities=33% Similarity=0.365 Sum_probs=131.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++||+|||||||+++|++.+|.+.+. .+ ...+ ++++|..++|++||+|++.....+++.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~--g~-------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKI--GE-------VHGG----GATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccc--cc-------ccCC----ccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 69999999999999999999988877542 00 1111 67799999999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|||||||.+|...+.++++.+|++|+|||+..|... ++.+++..+...++| +++++||+|+.+ ..++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~-------~t~~~~~~~~~~~~p-~ivviNK~D~~~-----a~~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEP-------QTETVWRQADRYNVP-RIAFVNKMDRTG-----ADFF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECCCCCC-----CCHH
Confidence 999999999999999999999999999999987533 899999999999999 678899999986 3345
Q ss_pred HHHHHHHhhhhhcCcCCceeeEeecCCCCC
Q psy13961 169 EIKKEVSGYIKKIGYNPATVAFVPISGWHG 198 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g 198 (459)
++.++++..+.... -...+|+|+..+
T Consensus 135 ~~~~~l~~~l~~~~----~~~~~Pisa~~~ 160 (270)
T cd01886 135 RVVEQIREKLGANP----VPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHHHHhCCCc----eEEEeccccCCC
Confidence 56666666554321 234689998754
No 72
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=4e-25 Score=204.44 Aligned_cols=164 Identities=32% Similarity=0.447 Sum_probs=126.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-----------
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL----------- 77 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~----------- 77 (459)
+|+++|+.++|||||+++|... ..+ .|++..+ ..++.+.+|.++|+|+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~~-------------~~~~~~~--~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--ELD-------------NGRGKAR--LNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CcC-------------CCCCeEE--eehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 5899999999999999999742 111 1222222 23667777777888774432
Q ss_pred -------------eEEeeCCEEEEEEeCCCccchHhHHHHhhc--ccCEEEEEEECCCCceeccccCCCchHHHHHHHHH
Q psy13961 78 -------------WKFETSKFYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 142 (459)
Q Consensus 78 -------------~~~~~~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~ 142 (459)
..++..++.++|+|||||++|.+++.+++. .+|++++|||++.+..+ ++++++.++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-------~d~~~l~~l~~ 136 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-------MTKEHLGLALA 136 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-------HHHHHHHHHHH
Confidence 123445789999999999999999999986 79999999999987543 99999999999
Q ss_pred cCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcC---------------------CceeeEeecCCCCCCcc
Q psy13961 143 LGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN---------------------PATVAFVPISGWHGDNM 201 (459)
Q Consensus 143 ~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~---------------------~~~~~~i~iSa~~g~~i 201 (459)
+++| +++|+||+|+.+ +.++.+..+++.++++..|+. ...+|++++|+.+|+|+
T Consensus 137 ~~ip-~ivvvNK~D~~~----~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi 211 (224)
T cd04165 137 LNIP-VFVVVTKIDLAP----ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL 211 (224)
T ss_pred cCCC-EEEEEECccccC----HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH
Confidence 9999 789999999975 356778888888887754433 11358999999999998
No 73
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=4.8e-25 Score=200.68 Aligned_cols=190 Identities=31% Similarity=0.367 Sum_probs=144.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.++|+++|++++|||||+++|++..+.+..... .. .++++..+.|+.+|+|+......+++.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--------------~~-~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--------------VE-ERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--------------cc-ccccccchhHHhcccccccceeEEEECCEE
Confidence 479999999999999999999976555433200 00 355788888999999998888888889999
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
+.|||||||++|...+..+++.+|++++|+|++++.++ ++.+++..+...++| +++|+||+|+.. .+
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~NK~Dl~~-----~~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-------QTRFVLKKALELGLK-PIVVINKIDRPD-----AR 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccH-------HHHHHHHHHHHcCCC-EEEEEECCCCCC-----CC
Confidence 99999999999999999999999999999999876433 666777777778999 788899999975 33
Q ss_pred HHHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 167 FEEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
++...+++..++..++...+ +++++++||++|.|+.+-. .|-+ ....|++.|.++.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~---~~~~-----------~~~~l~~~~~~~~~~ 193 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE---DPSE-----------DLEPLFDTIIEHVPA 193 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc---cchh-----------hHHHHHHHHHhcCCC
Confidence 44555666666655544322 4689999999999984421 1111 126888888887764
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.93 E-value=6e-25 Score=205.18 Aligned_cols=144 Identities=37% Similarity=0.480 Sum_probs=119.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++||+|+|||||+++|++..+.+.+. |+-. .-.+++|..++|++||+|+......+++.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~------------g~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKL------------GSVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccc------------cccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 68999999999999999999988877642 1111 0135689999999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|||||||.+|...+.++++.+|++++|+|+.++... ++++++..+...++| +++++||+|+...+ ++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-------~~~~~~~~~~~~~~P-~iivvNK~D~~~a~-----~~ 134 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-------QTRILWRLLRKLNIP-TIIFVNKIDRAGAD-----LE 134 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECccccCCC-----HH
Confidence 999999999999999999999999999999987432 888999999999999 67889999998632 34
Q ss_pred HHHHHHHhhh
Q psy13961 169 EIKKEVSGYI 178 (459)
Q Consensus 169 ~i~~~l~~~l 178 (459)
++.++++..+
T Consensus 135 ~~~~~i~~~~ 144 (237)
T cd04168 135 KVYQEIKEKL 144 (237)
T ss_pred HHHHHHHHHH
Confidence 4445554433
No 75
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.93 E-value=3.7e-25 Score=181.16 Aligned_cols=106 Identities=35% Similarity=0.630 Sum_probs=101.2
Q ss_pred ccceEEEEEEEecCC-CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeee
Q psy13961 336 ATQDFTAQVIVLNHP-GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVES 414 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~-~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~ 414 (459)
++++|+|+|.||+++ .+|.+||+|++|+|+.+++|+|.+|.+++|+++|+..+++|++|++||.|.|+|++++|+|+|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 478999999999999 8899999999999999999999999999999999877888999999999999999999999999
Q ss_pred cCCCCCcceEEEEECCceEEEEEEEee
Q psy13961 415 FSEFPPLGRFAVRDMRQTVAVGVIKVN 441 (459)
Q Consensus 415 ~~~~~~~grfilrd~~~tva~G~V~~v 441 (459)
|++++++|||+|||+|+|+|+|+|+++
T Consensus 82 ~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 82 FEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred cccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 999999999999999999999999764
No 76
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.92 E-value=2.5e-24 Score=204.28 Aligned_cols=150 Identities=26% Similarity=0.396 Sum_probs=120.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.+||+++||+|||||||+++|++..+.+++.-.. .++++ .-..++|..++|++||+|+......+++.++.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~~-~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARKS-RKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------ccccc-CCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 4799999999999999999999998887653100 00000 11346899999999999999999999999999
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
++|||||||.+|...+..+++.+|++|+|+|+..+... ++...+..+...++| +++++||||+... .
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-------~~~~i~~~~~~~~~P-~iivvNK~D~~~a-----~ 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-------QTRKLFEVCRLRGIP-IITFINKLDREGR-----D 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-------HHHHHHHHHHhcCCC-EEEEEECCccCCC-----C
Confidence 99999999999999999999999999999999877432 778888888888999 7888999999763 2
Q ss_pred HHHHHHHHHhhh
Q psy13961 167 FEEIKKEVSGYI 178 (459)
Q Consensus 167 ~~~i~~~l~~~l 178 (459)
+.++.++++..+
T Consensus 140 ~~~~~~~l~~~l 151 (267)
T cd04169 140 PLELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHHH
Confidence 334444554433
No 77
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=4e-24 Score=191.82 Aligned_cols=173 Identities=31% Similarity=0.477 Sum_probs=131.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-----e
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-----T 82 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~ 82 (459)
+||+++|++++|||||+++|+...+.+.+.. + ..++.+..+.++.+|+|.......+. .
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE---------------M-KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC---------------C-ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 5899999999999999999998776654310 0 14567888889999999876654443 3
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
.+..+.|||||||++|...+..++..+|++|+|+|++++... ++.+++..+...++| +++|+||+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~-------~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~-- 134 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEA-------QTLANFYLALENNLE-IIPVINKIDLPSA-- 134 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccH-------hhHHHHHHHHHcCCC-EEEEEECCCCCcC--
Confidence 567899999999999999999999999999999999876322 666777666677899 8889999999752
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
+..+..+++.+. +++. ..+++++||++|+|+ ++|++.|.+.+|+
T Consensus 135 ---~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi------------------------~~l~~~l~~~~~~ 178 (179)
T cd01890 135 ---DPERVKQQIEDV---LGLD--PSEAILVSAKTGLGV------------------------EDLLEAIVERIPP 178 (179)
T ss_pred ---CHHHHHHHHHHH---hCCC--cccEEEeeccCCCCH------------------------HHHHHHHHhhCCC
Confidence 122233333332 3332 235899999999999 7899988877655
No 78
>KOG0464|consensus
Probab=99.92 E-value=3.4e-26 Score=216.40 Aligned_cols=296 Identities=25% Similarity=0.276 Sum_probs=202.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.+||+++.|+|+||||..++++|..|.+... .+..+| ..++|....||+||+|++.+...|+|.++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~---------g~vddg----dtvtdfla~erergitiqsaav~fdwkg~ 102 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSA---------GDVDDG----DTVTDFLAIERERGITIQSAAVNFDWKGH 102 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcc---------cccCCC----chHHHHHHHHHhcCceeeeeeeecccccc
Confidence 35799999999999999999999988876431 112223 56789999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
++++||||||.||.-++.+.++..|+++.|+|++.|+-. ||...|+++...++|. ++++||||... .
T Consensus 103 rinlidtpghvdf~leverclrvldgavav~dasagve~-------qtltvwrqadk~~ip~-~~finkmdk~~-----a 169 (753)
T KOG0464|consen 103 RINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEA-------QTLTVWRQADKFKIPA-HCFINKMDKLA-----A 169 (753)
T ss_pred eEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCccc-------ceeeeehhccccCCch-hhhhhhhhhhh-----h
Confidence 999999999999999999999999999999999988543 9999999999999995 77789999987 3
Q ss_pred HHHHHHHHHHhhhhh------------cCcCCcee-----eEeec--CCCCCCcccccc---CC----------------
Q psy13961 166 RFEEIKKEVSGYIKK------------IGYNPATV-----AFVPI--SGWHGDNMLEVS---DK---------------- 207 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~------------~g~~~~~~-----~~i~i--Sa~~g~~i~~~~---~~---------------- 207 (459)
.|+...+.+++-+.. -||+..-+ ...+- .+..|.+...+. .+
T Consensus 170 nfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~ 249 (753)
T KOG0464|consen 170 NFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALC 249 (753)
T ss_pred hhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHH
Confidence 444444444433211 01110000 00111 111222211110 00
Q ss_pred --------------CCCcccc---------------------ccccccCCC----ChhhHHHhccccCCCCCCCC-----
Q psy13961 208 --------------MPWFKGW---------------------AIERKEGKA----DGKCLIEALDAILPPSRPTE----- 243 (459)
Q Consensus 208 --------------~~w~~~~---------------------~~~~~~~~~----~g~~Ll~~l~~~~~~~~~~~----- 243 (459)
..-|.+. .....+|++ +.+.|++++.-++|.+...+
T Consensus 250 ~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflq 329 (753)
T KOG0464|consen 250 EQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQ 329 (753)
T ss_pred HHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHh
Confidence 0001110 011224544 44889999998888654322
Q ss_pred ---CCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCc
Q psy13961 244 ---KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVS 316 (459)
Q Consensus 244 ---~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~ 316 (459)
..+......+...+..|..++-|+++|+++.+-.+..........+..+.. .+..+++..||.+.-.+ |
T Consensus 330 wykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~--g-- 405 (753)
T KOG0464|consen 330 WYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTA--G-- 405 (753)
T ss_pred hhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEe--c--
Confidence 222222334455567899999999999999999999887776666665443 35678899999765432 4
Q ss_pred ccCcceeEEEccCCC
Q psy13961 317 VKELRRGFVAGDSKA 331 (459)
Q Consensus 317 ~~~i~~G~vl~~~~~ 331 (459)
.+...+||+++..+.
T Consensus 406 lk~tatgdtivaska 420 (753)
T KOG0464|consen 406 LKHTATGDTIVASKA 420 (753)
T ss_pred ceeeccCCeEEecch
Confidence 456778999876554
No 79
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.92 E-value=5e-24 Score=174.36 Aligned_cols=106 Identities=24% Similarity=0.405 Sum_probs=101.6
Q ss_pred ccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeec
Q psy13961 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 415 (459)
.+++|+|+|+|++++.||.+||++++|+|+..++|+|.+|.+++|.++++..+++|++|++||.|.|+|++++|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 37899999999999999999999999999999999999999999999998777789999999999999999999999999
Q ss_pred CCCCCcceEEEEECCceEEEEEEEee
Q psy13961 416 SEFPPLGRFAVRDMRQTVAVGVIKVN 441 (459)
Q Consensus 416 ~~~~~~grfilrd~~~tva~G~V~~v 441 (459)
++++.+|||+||++|.|+|+|+|+++
T Consensus 82 ~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 82 KDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred ccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999875
No 80
>KOG0469|consensus
Probab=99.92 E-value=4.6e-25 Score=213.03 Aligned_cols=316 Identities=27% Similarity=0.377 Sum_probs=211.4
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|++++..+|+.++.|+|+|||||...|....+-|... ..|. +.++|..+.|.+||+||..+..++
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a----------kaGe-----~Rf~DtRkDEQeR~iTIKStAISl 77 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA----------KAGE-----TRFTDTRKDEQERGITIKSTAISL 77 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeec----------ccCC-----ccccccccchhhcceEeeeeeeee
Confidence 6778888999999999999999999999887776532 1222 456999999999999997654332
Q ss_pred ----------------eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC
Q psy13961 81 ----------------ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 144 (459)
Q Consensus 81 ----------------~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ 144 (459)
+.++..++|||.|||-||..+.-.+++..|++++|||+-+|++- ||+..+.++....
T Consensus 78 ~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-------QTETVLrQA~~ER 150 (842)
T KOG0469|consen 78 FFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-------QTETVLRQAIAER 150 (842)
T ss_pred hhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-------chHHHHHHHHHhh
Confidence 23468999999999999999999999999999999999999776 9999999999888
Q ss_pred CceEEEEEEccCCCC--CCCcHH----HHHHHHHHHHhhhhhcCcCC-cee-------eEeecCCCCCCccccc------
Q psy13961 145 VKQLIVGVNKMDSTE--PPYSEA----RFEEIKKEVSGYIKKIGYNP-ATV-------AFVPISGWHGDNMLEV------ 204 (459)
Q Consensus 145 ip~iivviNK~D~~~--~~~~~~----~~~~i~~~l~~~l~~~g~~~-~~~-------~~i~iSa~~g~~i~~~------ 204 (459)
+.+ ++++||||+.- -+++++ .|..+.+.+..++..++..+ ..+ .+-+.|+++|+...-.
T Consensus 151 IkP-vlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y 229 (842)
T KOG0469|consen 151 IKP-VLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMY 229 (842)
T ss_pred ccc-eEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHH
Confidence 885 66689999751 112222 23333444444444444321 122 2334567776653110
Q ss_pred ----------------------cCCCCCcccccc------c---------------------------------------
Q psy13961 205 ----------------------SDKMPWFKGWAI------E--------------------------------------- 217 (459)
Q Consensus 205 ----------------------~~~~~w~~~~~~------~--------------------------------------- 217 (459)
...-+|-+.-.. .
T Consensus 230 ~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~ 309 (842)
T KOG0469|consen 230 AKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKG 309 (842)
T ss_pred HHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceecc
Confidence 001123110000 0
Q ss_pred ---cccC-----------CCChhhHHHhccccCCCC--------------------------CCCCCCeeEEeEEEEEeC
Q psy13961 218 ---RKEG-----------KADGKCLIEALDAILPPS--------------------------RPTEKPLRLPLQDVYKIG 257 (459)
Q Consensus 218 ---~~~~-----------~~~g~~Ll~~l~~~~~~~--------------------------~~~~~p~~~~i~~v~~~~ 257 (459)
..+| -..++.||+.|.-.+|.+ ++.+.|+.|+|+......
T Consensus 310 ~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPts 389 (842)
T KOG0469|consen 310 DEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTS 389 (842)
T ss_pred ccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccC
Confidence 0011 113466666666555544 245789999999998888
Q ss_pred CceeEE-EEEEEeeeEecCCeEEEecCCe------EEEEEEEE-------eccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 258 GIGTVP-VGRVETGVIKPGMLVTFAPANL------TTEVKSVE-------MHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 258 ~~G~v~-~G~v~sG~l~~gd~v~~~p~~~------~~~V~~I~-------~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
..|+.+ +|||++|++..|+++.+...+. ..-++.|+ ..-++++-..||.++++. |++.--++.|
T Consensus 390 DkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtG 467 (842)
T KOG0469|consen 390 DKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTG 467 (842)
T ss_pred CCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccC
Confidence 888876 6999999999999999964331 11233333 245788899999999976 6654456666
Q ss_pred EEEccCCCCCCcccceEEE
Q psy13961 324 FVAGDSKASPPKATQDFTA 342 (459)
Q Consensus 324 ~vl~~~~~~~~~~~~~f~a 342 (459)
.+-.. +.......++|.+
T Consensus 468 TiTt~-e~AHNmrvMKFSV 485 (842)
T KOG0469|consen 468 TITTS-EAAHNMRVMKFSV 485 (842)
T ss_pred ceeeh-hhhccceEEEeec
Confidence 55443 3222233555654
No 81
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.91 E-value=4.9e-24 Score=173.47 Aligned_cols=103 Identities=75% Similarity=1.200 Sum_probs=99.1
Q ss_pred ccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeec
Q psy13961 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 415 (459)
.+++|+|+|.||+++.||.+||+|++|+++.+++|+|.+|.+++|.++++..+++|++|++||.+.|+|.+++|+|+|+|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~ 81 (104)
T cd03705 2 VAESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETF 81 (104)
T ss_pred cccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEc
Confidence 36899999999999999999999999999999999999999999999998877789999999999999999999999999
Q ss_pred CCCCCcceEEEEECCceEEEEEE
Q psy13961 416 SEFPPLGRFAVRDMRQTVAVGVI 438 (459)
Q Consensus 416 ~~~~~~grfilrd~~~tva~G~V 438 (459)
++++.+|||+|||+|.|+|+|+|
T Consensus 82 ~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 82 SEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred ccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 82
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=3.2e-23 Score=182.82 Aligned_cols=153 Identities=33% Similarity=0.493 Sum_probs=117.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-CEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-KFY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~ 86 (459)
.+|+++|++|+|||||+++|+... .+..+.+..+++|++..+..+... +..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 52 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKR 52 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcE
Confidence 379999999999999999996310 123344556788888888777766 789
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
+.+|||||+++|...+..++..+|++++|+|++++..+ ++.+++..+...+.+++++++||+|+.+. ..
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~-------~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~----~~ 121 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMP-------QTREHLEILELLGIKRGLVVLTKADLVDE----DW 121 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccH-------hHHHHHHHHHHhCCCcEEEEEECccccCH----HH
Confidence 99999999999999888889999999999999875333 77787777777787348999999999762 23
Q ss_pred HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.....+++.+.++..+. ...+++++||++|+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 122 LELVEEEIRELLAGTFL--ADAPIFPVSAVTGEGI 154 (164)
T ss_pred HHHHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCH
Confidence 34445556665554332 2467999999999999
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.4e-22 Score=183.05 Aligned_cols=179 Identities=41% Similarity=0.589 Sum_probs=140.1
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|.+|+|||||+++|+......... .......++....+..+|+|++.....++.....+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERD---------------GTVEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcC---------------CceecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 58999999999999999998765443221 111123466677788889999988888888889999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
||||||+.+|...+..++..+|++++|+|+..+... +..+.+..+...+.| +++++||+|+... ..+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~-i~iv~nK~D~~~~----~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQP-------QTREHLRIAREGGLP-IIVAINKIDRVGE----EDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcH-------HHHHHHHHHHHCCCC-eEEEEECCCCcch----hcHH
Confidence 999999999999999999999999999999876322 667777777777888 8999999999862 4445
Q ss_pred HHHHHHHhhhhhcCc---------CCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 169 EIKKEVSGYIKKIGY---------NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~---------~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
...+++++.++..+. .....+++++||++|.|+ ..|++.|.+.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi------------------------~~l~~~l~~~l~~ 188 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGV------------------------EELLEAIVEHLPP 188 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCH------------------------HHHHHHHHhhCCC
Confidence 556666666665553 234678999999999998 7888988887765
No 84
>KOG1144|consensus
Probab=99.89 E-value=1.7e-22 Score=203.01 Aligned_cols=226 Identities=25% Similarity=0.304 Sum_probs=165.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee----
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---- 82 (459)
..-+||+||+|.|||-|+..|... + .++.-..|+|..++..+|..
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~t-N------------------------------VqegeaggitqqIgAt~fp~~ni~ 523 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGT-N------------------------------VQEGEAGGITQQIGATYFPAENIR 523 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcc-c------------------------------cccccccceeeeccccccchHHHH
Confidence 456899999999999999988421 1 11122346666665444321
Q ss_pred --------------CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceE
Q psy13961 83 --------------SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 148 (459)
Q Consensus 83 --------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~i 148 (459)
.--.+.+||||||+.|.....+|.+.||++|||||...|.- +||.|.+.+++..+.| |
T Consensus 524 e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGle-------pqtiESi~lLR~rktp-F 595 (1064)
T KOG1144|consen 524 EKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLE-------PQTIESINLLRMRKTP-F 595 (1064)
T ss_pred HHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCC-------cchhHHHHHHHhcCCC-e
Confidence 22468899999999999999999999999999999998842 3999999999999999 9
Q ss_pred EEEEEccCCCCCCCc----------------------HHHHHHHHHHHHhhhhhcCcC----------CceeeEeecCCC
Q psy13961 149 IVGVNKMDSTEPPYS----------------------EARFEEIKKEVSGYIKKIGYN----------PATVAFVPISGW 196 (459)
Q Consensus 149 ivviNK~D~~~~~~~----------------------~~~~~~i~~~l~~~l~~~g~~----------~~~~~~i~iSa~ 196 (459)
||++||+|+.. .|. +.|+..+..++ ...|++ ...+.++|+||.
T Consensus 596 ivALNKiDRLY-gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~ef----aEQgLN~~LyykNk~~~~~vsiVPTSA~ 670 (1064)
T KOG1144|consen 596 IVALNKIDRLY-GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEF----AEQGLNAELYYKNKEMGETVSIVPTSAI 670 (1064)
T ss_pred EEeehhhhhhc-ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHcccchhheeecccccceEEeeecccc
Confidence 99999999974 363 12222222222 222332 124789999999
Q ss_pred CCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC----CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeE
Q psy13961 197 HGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS----RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVI 272 (459)
Q Consensus 197 ~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~----~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l 272 (459)
+|+|+ +.|+-+|.++.... -..-..+...|.+|-.++|.|+.+-.-+..|.|
T Consensus 671 sGeGi------------------------pdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L 726 (1064)
T KOG1144|consen 671 SGEGI------------------------PDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGEL 726 (1064)
T ss_pred cCCCc------------------------HHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEccee
Confidence 99999 77777776654321 112345678888999999999999999999999
Q ss_pred ecCCeEEEecCC----------------eEEEEEEEEeccccce
Q psy13961 273 KPGMLVTFAPAN----------------LTTEVKSVEMHHEALQ 300 (459)
Q Consensus 273 ~~gd~v~~~p~~----------------~~~~V~~I~~~~~~v~ 300 (459)
+.||.|.++..+ +..+|++-++|+..|.
T Consensus 727 ~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvk 770 (1064)
T KOG1144|consen 727 HEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVK 770 (1064)
T ss_pred ccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhh
Confidence 999999987654 3468888777765443
No 85
>KOG0467|consensus
Probab=99.89 E-value=1e-21 Score=198.74 Aligned_cols=173 Identities=27% Similarity=0.403 Sum_probs=136.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..+|++++.|+|||||||...|+...|.|.++... + -.++|..++|..||||+..+.......++
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlag------------k---irfld~redeq~rgitmkss~is~~~~~~ 72 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAG------------K---IRFLDTREDEQTRGITMKSSAISLLHKDY 72 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhcc------------c---eeeccccchhhhhceeeeccccccccCce
Confidence 46899999999999999999999888887765333 2 34599999999999999988877777899
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC---C
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP---Y 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~---~ 162 (459)
.++|||+|||.||..+..++.+.+|+++++||+.+|+.. ||...++++-..|.. .++|+||||+.-.+ .
T Consensus 73 ~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~-------qt~~vlrq~~~~~~~-~~lvinkidrl~~el~ls 144 (887)
T KOG0467|consen 73 LINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCS-------QTYAVLRQAWIEGLK-PILVINKIDRLITELKLS 144 (887)
T ss_pred EEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccch-------hHHHHHHHHHHccCc-eEEEEehhhhHHHHHhcC
Confidence 999999999999999999999999999999999999776 999999999999998 68889999942100 1
Q ss_pred cHHHHHH---HHHHHHhhhh-------------------hcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEE---IKKEVSGYIK-------------------KIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~---i~~~l~~~l~-------------------~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.++.+.. +.+++...+. ..-|.|.+-.++..||..|.++
T Consensus 145 p~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f 205 (887)
T KOG0467|consen 145 PQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF 205 (887)
T ss_pred hHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence 1233333 3344433332 2234455567888899888774
No 86
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.88 E-value=8.1e-22 Score=188.44 Aligned_cols=144 Identities=28% Similarity=0.387 Sum_probs=117.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++||+|+|||||+++|++..+.+.+. |.-. .-.+++|..++|+.+++|+......+++.++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~------------g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL------------GSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC------------Ceec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 68999999999999999999877765432 1100 1146688999999999999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~ 168 (459)
|||||||.+|...+..++..+|++++|+|++.+... ++...+..+...++| +++++||+|+... .++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~-------~~~~~~~~~~~~~~p-~iivvNK~D~~~~-----~~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVEV-------GTEKLWEFADEAGIP-RIIFINKMDRERA-----DFD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECCccCCC-----CHH
Confidence 999999999999999999999999999999987433 788888888899999 6778999999863 344
Q ss_pred HHHHHHHhhh
Q psy13961 169 EIKKEVSGYI 178 (459)
Q Consensus 169 ~i~~~l~~~l 178 (459)
+..+++++.+
T Consensus 135 ~~~~~l~~~~ 144 (268)
T cd04170 135 KTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHh
Confidence 4555555443
No 87
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.87 E-value=1.2e-21 Score=158.83 Aligned_cols=100 Identities=24% Similarity=0.370 Sum_probs=93.4
Q ss_pred ccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeec
Q psy13961 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 415 (459)
++.+|.|+|+||+. .||.+||++++|+|+.+++|+|.+|.+++|+++++. .+|++|..||.|.|+|++++|+|+|+|
T Consensus 2 ~~~~f~a~i~~l~~-~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 2 VSDQFAATLVWMDE-EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ccceeeEEEEEecC-cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEecch
Confidence 46789999999994 589999999999999999999999999999999874 378999999999999999999999999
Q ss_pred CCCCCcceEEEEEC--CceEEEEEE
Q psy13961 416 SEFPPLGRFAVRDM--RQTVAVGVI 438 (459)
Q Consensus 416 ~~~~~~grfilrd~--~~tva~G~V 438 (459)
++++.+|||+|+|+ +.|+|+|+|
T Consensus 79 ~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 79 RENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred hhCCCcceEEEEECCCCcEEEEEeC
Confidence 99999999999766 899999986
No 88
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.87 E-value=8.9e-22 Score=157.90 Aligned_cols=98 Identities=54% Similarity=0.857 Sum_probs=89.3
Q ss_pred CCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEe
Q psy13961 333 PPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCV 412 (459)
Q Consensus 333 ~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~ 412 (459)
|++++++|+|+|.+|+++.+|.+||++++|+++.+++|++.++.+++| +++.. |++|++||.|.|+|.+++|+|+
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v 75 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV 75 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence 457899999999999999999999999999999999999999999998 55543 8999999999999999999999
Q ss_pred eecCCCCCcceEEEEECCceEEEEEEEee
Q psy13961 413 ESFSEFPPLGRFAVRDMRQTVAVGVIKVN 441 (459)
Q Consensus 413 ~~~~~~~~~grfilrd~~~tva~G~V~~v 441 (459)
|+|+ ||+|||+++|+|+|+|++|
T Consensus 76 e~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 76 EPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp TTTT------EEEEEETTEEEEEEEEEEE
T ss_pred ecCc------eEEEccCCeEEEEEEEEEe
Confidence 9988 9999999999999999987
No 89
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=1.6e-20 Score=166.33 Aligned_cols=148 Identities=33% Similarity=0.435 Sum_probs=107.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC---CE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---KF 85 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~ 85 (459)
.|+++|++|+|||||+++|+...- ......++|.+.....+... +.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-------------------------------ccccCCCeEEeeccEEEecccCCcc
Confidence 589999999999999999963210 00122356666665666653 67
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.+.+|||||+.+|...+..++..+|++++|+|++++..+ ++.+.+..++..++| +++|+||+|+... ..
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~--~~- 119 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMP-------QTIEAIKLAKAANVP-FIVALNKIDKPNA--NP- 119 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccH-------HHHHHHHHHHHcCCC-EEEEEEceecccc--cH-
Confidence 899999999999988888888999999999999876432 777888888889999 8888999999752 11
Q ss_pred HHHHHHHHHHhhhhhc--CcCCceeeEeecCCCCCCcc
Q psy13961 166 RFEEIKKEVSGYIKKI--GYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~--g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+.+.+..+.... .+ ...++++++|+.+|+|+
T Consensus 120 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 120 --ERVKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGI 154 (168)
T ss_pred --HHHHHHHHHhhccccccc-cCcCcEEEeecccCCCH
Confidence 22223333222110 11 13468999999999999
No 90
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=2.9e-20 Score=172.18 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=121.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+...-|+++|.+|+|||||+|+|+.+.-++ +.+..+..|.+-..+ +..+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------------------------vS~k~QTTR~~I~GI------~t~~ 52 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI------------------------VSPKPQTTRNRIRGI------VTTD 52 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe------------------------ecCCcchhhhheeEE------EEcC
Confidence 4566789999999999999999998654433 334333333332222 4456
Q ss_pred CEEEEEEeCCCccc--------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 84 KFYVTIIDAPGHRD--------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 84 ~~~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
+.++.|+||||.++ ..+....++..+|++++|||++++.-+ ..+..+..++..+.| +++++||+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~-------~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP-------GDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc-------cHHHHHHHHhhcCCC-eEEEEEcc
Confidence 88999999999643 234455667889999999999876322 556666777776789 78889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI 235 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~ 235 (459)
|...++ ..+....+.+. ....| ..++|+||++|.|+ +.|++.+...
T Consensus 125 D~~~~~---~~l~~~~~~~~---~~~~f----~~ivpiSA~~g~n~------------------------~~L~~~i~~~ 170 (298)
T COG1159 125 DKVKPK---TVLLKLIAFLK---KLLPF----KEIVPISALKGDNV------------------------DTLLEIIKEY 170 (298)
T ss_pred ccCCcH---HHHHHHHHHHH---hhCCc----ceEEEeeccccCCH------------------------HHHHHHHHHh
Confidence 998731 21222222222 22333 37899999999999 7888888887
Q ss_pred CCCCC-------CCCCCeeEEeEEE
Q psy13961 236 LPPSR-------PTEKPLRLPLQDV 253 (459)
Q Consensus 236 ~~~~~-------~~~~p~~~~i~~v 253 (459)
+|... -.+.|.+|.+.++
T Consensus 171 Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 171 LPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred CCCCCCcCChhhccCChHHHHHHHH
Confidence 76432 2456666655544
No 91
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.85 E-value=1.5e-20 Score=152.60 Aligned_cols=101 Identities=42% Similarity=0.687 Sum_probs=95.0
Q ss_pred ccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeec
Q psy13961 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~ 415 (459)
++++|+|++.+++++.+|.+||++.+|+++.+++|+|..+.+++|.++ ..++++++|++||.+.|+|++++|+|+|+|
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 79 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALETF 79 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEEEh
Confidence 468999999999999999999999999999999999999999999974 445678999999999999999999999999
Q ss_pred CCCCCcceEEEEECCceEEEEEE
Q psy13961 416 SEFPPLGRFAVRDMRQTVAVGVI 438 (459)
Q Consensus 416 ~~~~~~grfilrd~~~tva~G~V 438 (459)
++++.+|||+|||+++|+|+|+|
T Consensus 80 ~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 80 SENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred hhCCCcccEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=6.9e-20 Score=162.30 Aligned_cols=153 Identities=17% Similarity=0.235 Sum_probs=102.7
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
||+++|+.|+|||||+++|+...... .+ .. ......|+...+..+.+++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~-----------~~--~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KG-----------LP--PSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cC-----------Cc--ccccCCccccceEEEEECCEEEE
Confidence 68999999999999999997432110 00 00 01123355555566777789999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+||||||.+|...+...+..+|++++|+|+++.. .+. .....+..+. ..++| +++++||+|+...
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~---- 122 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RFE---ESKSALEKVLRNEALEGVP-LLILANKQDLPDA---- 122 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HHH---HHHHHHHHHHhChhhcCCC-EEEEEEccccccC----
Confidence 9999999999988888899999999999997541 110 2222322221 24788 8999999998753
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+....+..+. ..++++++||++|+|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGV 157 (167)
T ss_pred CCHHHHHHHhccccccccC--CceEEEEeeCCCCcCH
Confidence 2223344444333332332 3578999999999999
No 93
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=4.1e-20 Score=159.31 Aligned_cols=141 Identities=26% Similarity=0.340 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|.+|+|||||+|+|+..... +.+ -.|.|++.....+++.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-------------------------v~n------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-------------------------VGN------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-------------------------EEE------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-------------------------ecC------CCCCCeeeeeEEEEecCceE
Confidence 57999999999999999999743211 111 24899999999999999999
Q ss_pred EEEeCCCccchHh----H--HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 88 TIIDAPGHRDFIK----N--MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 88 ~liDtpG~~~~~~----~--~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.|+|+||..++.. + ....+ ..+|++++|+||+.- + +..+.+.++..+|+| +++|+||||...
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~-------r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--E-------RNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--H-------HHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--H-------HHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 9999999644311 1 12222 579999999999742 2 445555677789999 899999999875
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..-.+.+.+ .+.+ .+| +|++|+||.+++|+
T Consensus 120 ~~g~~id~~----~Ls~---~Lg-----~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 120 RKGIEIDAE----KLSE---RLG-----VPVIPVSARTGEGI 149 (156)
T ss_dssp HTTEEE-HH----HHHH---HHT-----S-EEEEBTTTTBTH
T ss_pred HcCCEECHH----HHHH---HhC-----CCEEEEEeCCCcCH
Confidence 211111222 2222 234 47999999999998
No 94
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=175.26 Aligned_cols=154 Identities=27% Similarity=0.334 Sum_probs=126.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|.||+|||||+|+|+.+...+.. ...|.|.|.-...++++++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~------------------------------~~aGTTRD~I~~~~e~~~~ 226 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS------------------------------DIAGTTRDSIDIEFERDGR 226 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec------------------------------CCCCccccceeeeEEECCe
Confidence 4689999999999999999999876544431 1358899999999999999
Q ss_pred EEEEEeCCCccc----------h-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 86 YVTIIDAPGHRD----------F-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~~----------~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+.|+||+|..+ | ...+..++..+|.++||+||.+|..+ |....+.++...|.+ +++|+||
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~-------qD~~ia~~i~~~g~~-~vIvvNK 298 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE-------QDLRIAGLIEEAGRG-IVIVVNK 298 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchH-------HHHHHHHHHHHcCCC-eEEEEEc
Confidence 999999999643 3 22355667889999999999998665 999999999999999 7888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+|+.+. ++..+++.++++...+..+++ .+++++||++|.++.+
T Consensus 299 WDl~~~--~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~ 341 (444)
T COG1160 299 WDLVEE--DEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDK 341 (444)
T ss_pred cccCCc--hhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHH
Confidence 999873 346677888888887777766 4799999999999844
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=2.8e-19 Score=183.03 Aligned_cols=165 Identities=27% Similarity=0.294 Sum_probs=120.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+.....+. ....|.|.+.....+.+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEECC
Confidence 3568999999999999999999985322111 1134778877777777888
Q ss_pred EEEEEEeCCCccch-----------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDF-----------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
..+.++||||+.+. ...+.+++..+|++|+|+|+..+... |....+.++...+.| +++++|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~-------~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITE-------QDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997432 12345677899999999999987433 777777788888899 889999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCC-CCCccccc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK-MPWFKGWA 215 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~-~~w~~~~~ 215 (459)
|+|+.+ +...+++.+++...+.... .++++++||++|.|+.+.... ..||+.+.
T Consensus 293 K~Dl~~----~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 293 KWDLVD----EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CccCCC----HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 999975 2445566666665554332 368999999999999765432 34554443
No 96
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.80 E-value=3.6e-19 Score=140.57 Aligned_cols=89 Identities=82% Similarity=1.273 Sum_probs=85.2
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcce
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 322 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~ 322 (459)
++||||+|+++|++++.|++++|+|++|++++||+++++|.+..++|++|++++.++++|.|||+|++.|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCC
Q psy13961 323 GFVAGDSKA 331 (459)
Q Consensus 323 G~vl~~~~~ 331 (459)
||+||++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999998653
No 97
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=1.1e-18 Score=166.90 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=101.1
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++|+|||||+++|+...-.+ +.+. .+.|.+.........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~------------------------vs~~------~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI------------------------TSPK------AQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee------------------------cCCC------CCcccCcEEEEEEcCCcEEE
Confidence 68999999999999999997532111 1111 12222221122234556899
Q ss_pred EEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 89 IIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 89 liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
|+||||+.+. .+.+..++..+|++++|+|++.... .....+..+...+.| +++|+||+|+.+.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDNKFK 122 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeCCCH
Confidence 9999997542 2234556788999999999986521 123445566667888 7888999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
.. ..+.+..+....++ .+++|+||++|.|+ +.|++.|.+.+|+
T Consensus 123 ----~~---~~~~~~~~~~~~~~----~~v~~iSA~~g~gi------------------------~~L~~~l~~~l~~ 165 (270)
T TIGR00436 123 ----DK---LLPLIDKYAILEDF----KDIVPISALTGDNT------------------------SFLAAFIEVHLPE 165 (270)
T ss_pred ----HH---HHHHHHHHHhhcCC----CceEEEecCCCCCH------------------------HHHHHHHHHhCCC
Confidence 22 22233333332232 26899999999999 7788887776654
No 98
>KOG0468|consensus
Probab=99.80 E-value=1.1e-17 Score=166.96 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=118.0
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE-
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF- 80 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~- 80 (459)
...-..+||+++||-.||||+|+..|..++-.-.+ ...+.+ ..++|....|++||.+|...-.++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-----------~~~e~~---lrytD~l~~E~eRg~sIK~~p~Tl~ 188 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-----------KNTEAD---LRYTDTLFYEQERGCSIKSTPVTLV 188 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceecccccc-----------cccccc---ccccccchhhHhcCceEeecceEEE
Confidence 34455789999999999999999999865421000 001111 245899999999999997764433
Q ss_pred ----eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 81 ----ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 81 ----~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
+...+-++++|||||-+|..++..+++.+|+++||||+.+|++- ++...+..+-+...| +++|+||+|
T Consensus 189 l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-------ntEr~ikhaiq~~~~-i~vviNKiD 260 (971)
T KOG0468|consen 189 LSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVML-------NTERIIKHAIQNRLP-IVVVINKVD 260 (971)
T ss_pred EecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCcee-------eHHHHHHHHHhccCc-EEEEEehhH
Confidence 23457899999999999999999999999999999999999765 899999988899999 999999999
Q ss_pred CCC------CCCcHHHHHHHHHHHHhhhhh
Q psy13961 157 STE------PPYSEARFEEIKKEVSGYIKK 180 (459)
Q Consensus 157 ~~~------~~~~~~~~~~i~~~l~~~l~~ 180 (459)
+.- +....-.+..+.+++...+..
T Consensus 261 RLilELkLPP~DAY~KLrHii~~iN~~is~ 290 (971)
T KOG0468|consen 261 RLILELKLPPMDAYYKLRHIIDEINNLIST 290 (971)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhcchhhh
Confidence 741 112223345566666655443
No 99
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.7e-18 Score=170.34 Aligned_cols=174 Identities=22% Similarity=0.247 Sum_probs=112.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+++|+...-. .+.. ..+.|.+.....+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~------------------------ivs~------k~~tTr~~~~~~~~~~~~ 100 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS------------------------IVTP------KVQTTRSIITGIITLKDT 100 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee------------------------eccC------CCCCccCcEEEEEEeCCe
Confidence 4569999999999999999999743211 1111 123344433344566788
Q ss_pred EEEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
++.||||||+.+. .+....++..+|++++|+|+..+..+ .....+..++..+.| .++|+||+|+
T Consensus 101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~-------~~~~il~~l~~~~~p-~IlViNKiDl 172 (339)
T PRK15494 101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDD-------ITHNILDKLRSLNIV-PIFLLNKIDI 172 (339)
T ss_pred EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCH-------HHHHHHHHHHhcCCC-EEEEEEhhcC
Confidence 9999999998532 22233457789999999998764211 334455666677888 5678999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
.+. ...++.+ .+.... ...+++|+||++|.|+ +.|++.|...+|
T Consensus 173 ~~~-----~~~~~~~----~l~~~~---~~~~i~~iSAktg~gv------------------------~eL~~~L~~~l~ 216 (339)
T PRK15494 173 ESK-----YLNDIKA----FLTENH---PDSLLFPISALSGKNI------------------------DGLLEYITSKAK 216 (339)
T ss_pred ccc-----cHHHHHH----HHHhcC---CCcEEEEEeccCccCH------------------------HHHHHHHHHhCC
Confidence 651 2222322 332221 1246899999999999 778888877665
Q ss_pred CC-------CCCCCCeeEEeEEE
Q psy13961 238 PS-------RPTEKPLRLPLQDV 253 (459)
Q Consensus 238 ~~-------~~~~~p~~~~i~~v 253 (459)
+. ...+.|.++.+.++
T Consensus 217 ~~~~~~~~~~~td~~~~~~~~ei 239 (339)
T PRK15494 217 ISPWLYAEDDITDLPMRFIAAEI 239 (339)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHH
Confidence 32 23456666555543
No 100
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=1.2e-18 Score=178.14 Aligned_cols=154 Identities=29% Similarity=0.291 Sum_probs=115.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|++|+|||||+++|+.....+. ....|.|.+.....++..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~~ 220 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERNGK 220 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEECCc
Confidence 457999999999999999999974321110 11246777776667777888
Q ss_pred EEEEEeCCCccchHh-----------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 86 YVTIIDAPGHRDFIK-----------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~~~~~-----------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+.+|||||+.++.+ .+..++..+|++|+|+|+.++..+ +..+.+..+...+.| +++|+||
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~-------~~~~~~~~~~~~~~~-iiiv~NK 292 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITE-------QDLRIAGLILEAGKA-LVIVVNK 292 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccH-------HHHHHHHHHHHcCCc-EEEEEEC
Confidence 999999999865422 234567889999999999987543 777777777778899 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+|+.+ .+..++++.+++...+...+ .++++++||++|.|+.+.
T Consensus 293 ~Dl~~---~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l 335 (429)
T TIGR03594 293 WDLVK---DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKL 335 (429)
T ss_pred cccCC---CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHH
Confidence 99983 23556666677765554333 367999999999998654
No 101
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=6.7e-19 Score=172.00 Aligned_cols=153 Identities=27% Similarity=0.327 Sum_probs=120.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
..|+++|.+|+|||||+|+|+...- +.+.| ..|+|.|..+...+|.++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~------------------------AIV~D------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI------------------------AIVSD------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee------------------------eEeec------CCCCccCCccceeEEcCceE
Confidence 5799999999999999999975432 33333 25999999999999999999
Q ss_pred EEEeCCCccc-----hHh----HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 88 TIIDAPGHRD-----FIK----NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 88 ~liDtpG~~~-----~~~----~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.+|||+|..+ +.. .+..++..||++|||||+..|..+ +..+...+++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~-------~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITP-------ADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999863 322 345567889999999999988665 788888888877899 89999999986
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
.. +....+ +-.+|+. ..+|+||.+|.|+ .+|++.+...+|
T Consensus 126 ~~-------e~~~~e----fyslG~g----~~~~ISA~Hg~Gi------------------------~dLld~v~~~l~ 165 (444)
T COG1160 126 KA-------EELAYE----FYSLGFG----EPVPISAEHGRGI------------------------GDLLDAVLELLP 165 (444)
T ss_pred hh-------hhhHHH----HHhcCCC----CceEeehhhccCH------------------------HHHHHHHHhhcC
Confidence 41 111111 2345664 4799999999999 789999988874
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=3.4e-18 Score=152.52 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=98.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|++++|||||+++|+... .. . ...|+......+..++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~-------------------------~-------~~~t~g~~~~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID-------------------------T-------ISPTLGFQIKTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC-------------------------C-------cCCccccceEEEEECC
Confidence 446799999999999999999996320 00 0 0112222233445567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||++.|...+...+..+|++++|+|++... .+. ...+++..+ ...+.| +++++||+|+.+.
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 130 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---RLD---DCKRELKELLQEERLAGAT-LLILANKQDLPGA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHhChhhcCCC-EEEEEECcccccC
Confidence 88999999999998888888889999999999998651 111 222222222 224677 8899999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+ ++..+++........++++++||++|+|+
T Consensus 131 ----~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 131 ----LSEE----EIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred ----CCHH----HHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 1112 23333332222334578999999999999
No 103
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=6.1e-18 Score=150.15 Aligned_cols=151 Identities=28% Similarity=0.298 Sum_probs=101.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.++|+++|++|+|||||+++|+.....+. ....+.|.+.....+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV------------------------------SDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec------------------------------cCCCCCccCceeeEEEECCee
Confidence 57899999999999999999974321110 011234444444455667778
Q ss_pred EEEEeCCCccch----------H-hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 87 VTIIDAPGHRDF----------I-KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 87 ~~liDtpG~~~~----------~-~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
+.+|||||+.+. . ..+...+..+|++++|+|++.+... +....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITE-------QDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcch-------hHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999997543 1 2234456789999999999876322 444555566667888 88889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+. .....+.+.+.+.+.+... ...+++++||++++|+
T Consensus 124 Dl~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i 163 (174)
T cd01895 124 DLVEK--DSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGV 163 (174)
T ss_pred ccCCc--cHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCH
Confidence 99762 1234455555555444322 2357999999999998
No 104
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=3e-18 Score=150.80 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=93.7
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|.+++|||||+++|+...... .. ...|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~----------------------~~----------~~~t~g~~~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS----------------------QI----------IVPTVGFNVESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc----------------------ce----------ecCccccceEEEEECCEEEE
Confidence 58999999999999999996321000 00 01122222233556788999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH------HcCCceEEEEEEccCCCCCCC
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF------TLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~------~~~ip~iivviNK~D~~~~~~ 162 (459)
++||||+++|...+...+..+|++|+|+|+++.. .+. .....+..+. ..++| +++|+||+|+.+..
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---RLV---VVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---HHH---HHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 9999999999988888899999999999998652 110 2222232221 13678 88899999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...++.+. +.........++++++||++|.|+
T Consensus 121 ---~~~~~~~~----l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 121 ---TAVKITQL----LGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred ---CHHHHHHH----hCCccccCceEEEEEeeCCCCCch
Confidence 11222222 111111122457899999999999
No 105
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=3.8e-18 Score=150.91 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=95.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-- 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 84 (459)
.++|+++|+.|+|||||+++|+... . .. +.....+.+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~--~-------------------------~~----~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT--F-------------------------SE----RQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC--C-------------------------cc----cCCCccceEEEEEEEEECCEE
Confidence 5799999999999999999996321 0 00 0011122233333444444
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...++.+|++++|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+..
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SFE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HHH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 57899999999999888888889999999999998752 121 22223333322 3677 88889999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .++...+.+..+. ..++++||++|.|+
T Consensus 125 --~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 154 (165)
T cd01864 125 --EVL----FEEACTLAEKNGM----LAVLETSAKESQNV 154 (165)
T ss_pred --ccC----HHHHHHHHHHcCC----cEEEEEECCCCCCH
Confidence 111 1222233333332 35899999999998
No 106
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.77 E-value=3.6e-18 Score=132.50 Aligned_cols=83 Identities=36% Similarity=0.566 Sum_probs=80.0
Q ss_pred CeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeE
Q psy13961 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGF 324 (459)
Q Consensus 245 p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~ 324 (459)
||+|+|+++|+++ .|++++|+|++|++++||++.+.|++...+|++|++++.++++|.|||+|+++|++++..++++|+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~ 79 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGD 79 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCC
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEcc
Q psy13961 325 VAGD 328 (459)
Q Consensus 325 vl~~ 328 (459)
+|++
T Consensus 80 vl~~ 83 (83)
T cd03698 80 VLCS 83 (83)
T ss_pred EEeC
Confidence 9984
No 107
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=9.2e-18 Score=146.67 Aligned_cols=138 Identities=23% Similarity=0.228 Sum_probs=96.9
Q ss_pred EEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEEE
Q psy13961 11 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTII 90 (459)
Q Consensus 11 ~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~li 90 (459)
+++|++|+|||||+++|+..... . . +...++|.+......+..++.+.++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------~-~-----~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------I-V-----EDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------e-e-----cCCCCceeCceeEEEEECCeEEEEE
Confidence 58999999999999999732100 0 0 1123556666666677778899999
Q ss_pred eCCCccchHh--------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 91 DAPGHRDFIK--------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 91 DtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
||||+.++.. .+...+..+|++++|+|+..+... ...+.+..++..+.| +++|+||+|+.+.
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTP-------ADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCc-------cHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988543 345567889999999999865322 455566777777888 8999999999862
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .. .+..+++ .+++++|+++|.|+
T Consensus 121 ---~~~--~~----~~~~~~~----~~~~~~Sa~~~~gv 146 (157)
T cd01894 121 ---EDE--AA----EFYSLGF----GEPIPISAEHGRGI 146 (157)
T ss_pred ---HHH--HH----HHHhcCC----CCeEEEecccCCCH
Confidence 111 11 1223333 15789999999998
No 108
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.76 E-value=8.1e-18 Score=147.73 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=94.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++++|||||+++|..... .+. ..|+......++..+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV---------------------------VTT-------IPTIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC---------------------------cCc-------CCccCcCeEEEEECCEEEE
Confidence 589999999999999999953210 000 0122233334556678999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHH---HcCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAF---TLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~---~~~ip~iivviNK~D~~~~~~~~ 164 (459)
||||||+.+|...+...+..+|++|+|+|+++.. .+. ...+.+. +++ ..+.| +++++||+|+.+..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~--- 116 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD---RLG---TAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL--- 116 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC---
Confidence 9999999999888888899999999999997641 110 1223332 222 13678 88999999997531
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...++.+.+ ........+.+++++||++|.|+
T Consensus 117 -~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 117 -SEAEISEKL----GLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred -CHHHHHHHh----CccccCCCcEEEEEeeccCCCCH
Confidence 112222222 11111223467999999999999
No 109
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.76 E-value=1.5e-17 Score=149.33 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=102.5
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
+....+|+++|++|+|||||+++|+.... +. .. ....|.|.+..++.. +
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~----------------------~~------~~~~~~t~~~~~~~~--~ 63 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKK-LA----------------------RT------SKTPGRTQLINFFEV--N 63 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc----------------------cc------cCCCCcceEEEEEEe--C
Confidence 34567999999999999999999974210 00 00 011244555544433 2
Q ss_pred CEEEEEEeCCCcc----------chHhHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEE
Q psy13961 84 KFYVTIIDAPGHR----------DFIKNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 150 (459)
Q Consensus 84 ~~~~~liDtpG~~----------~~~~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iiv 150 (459)
..+.+|||||+. +|...+...+ ..+|++++|+|++.+..+ +..+.+..+...++| +++
T Consensus 64 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~-------~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 -DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKE-------LDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred -CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCH-------HHHHHHHHHHHcCCC-EEE
Confidence 378999999963 2333333333 357899999999876332 556667777778999 889
Q ss_pred EEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 151 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++||+|+.+. ...+...+++++.++..+ .+.+++++||++|+|+
T Consensus 135 v~nK~D~~~~----~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 135 VLTKADKLKK----SELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGI 178 (179)
T ss_pred EEECcccCCH----HHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCC
Confidence 9999999752 445556667777766543 2357999999999987
No 110
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.75 E-value=9.9e-18 Score=148.84 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=96.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|+.++|||||+.+|.... . ... ..|+...+..+...+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~--~-------------------------~~~-------~~t~g~~~~~~~~~~ 52 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQ--S-------------------------VTT-------IPTVGFNVETVTYKN 52 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCC--C-------------------------ccc-------cCCcccceEEEEECC
Confidence 456899999999999999999996311 0 000 012222222344567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...++.+|++|+|+|+++.. .+. ...+.+... . ..++| ++++.||+|+.+.
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 125 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RID---EARQELHRIINDREMRDAL-LLVFANKQDLPDA 125 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hHH---HHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC
Confidence 89999999999999888888889999999999998641 111 223333222 1 23577 8999999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ..++ +...++........++++++||++|.|+
T Consensus 126 -~---~~~~----i~~~~~~~~~~~~~~~~~~~SAk~g~gv 158 (168)
T cd04149 126 -M---KPHE----IQEKLGLTRIRDRNWYVQPSCATSGDGL 158 (168)
T ss_pred -C---CHHH----HHHHcCCCccCCCcEEEEEeeCCCCCCh
Confidence 1 1122 2222221111222357899999999999
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=1.9e-17 Score=145.61 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|..++|||||+.+|... .. ... ..|+......++.....+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~--~~-------------------------~~~-------~pt~g~~~~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG--EI-------------------------VTT-------IPTIGFNVETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CC-------------------------ccc-------CCCCCcceEEEEECCEEE
Confidence 37999999999999999999531 10 000 012222223355567899
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~~ 163 (459)
.||||||+.+|...+...++.+|++|+|+|+++.. .+. +..+.+..+.. .+.| ++++.||+|+.+. ..
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RIG---EAREELQRMLNEDELRDAV-LLVFANKQDLPNA-MS 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCC-CC
Confidence 99999999999888888899999999999997641 111 33333332211 2466 8999999999652 11
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+++.+.+ ....+....+.++++||++|+|+
T Consensus 119 ---~~~i~~~~----~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 119 ---AAEVTDKL----GLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred ---HHHHHHHh----CccccCCCCEEEEEeeCCCCCCH
Confidence 12222222 11111223456889999999999
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=1.9e-17 Score=145.95 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|+.++|||||+++|+...- . .. .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~--~-------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY--E-------------------------PQ--QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--C-------------------------CC--cCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999974210 0 00 00011122211112233334678
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccCCCCCCCcHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D~~~~~~~~~ 165 (459)
.||||||+++|...+...+..+|++|+|+|+++... +. ...+.+..++.. ++| +++++||+|+.. .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~-----~ 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---YK---NLSKWYEELREYRPEIP-CIVVANKIDLDP-----S 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEECccCch-----h
Confidence 899999999999988888999999999999986521 11 223344444433 678 889999999853 1
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .++...+.+.. .++++++||++|.|+
T Consensus 120 ~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv 146 (161)
T cd04124 120 V----TQKKFNFAEKH-----NLPLYYVSAADGTNV 146 (161)
T ss_pred H----HHHHHHHHHHc-----CCeEEEEeCCCCCCH
Confidence 1 11122222222 247899999999999
No 113
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=2.3e-17 Score=146.39 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=88.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE-EE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF-YV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~~ 87 (459)
+|+++|++|||||||+++|......+. ...+.|.+.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 699999999999999999963211100 0012333333344555555 89
Q ss_pred EEEeCCCcc-------chHhHHHHhhcccCEEEEEEECCCC-ceeccccCCCchHHHHHHHHH-----cCCceEEEEEEc
Q psy13961 88 TIIDAPGHR-------DFIKNMITGTSQADCAVLIVAAGTG-EFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNK 154 (459)
Q Consensus 88 ~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~g-~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK 154 (459)
.|+||||+. ++...+.+.+..+|++++|+|++.. ... . +.......+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~---~---~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPV---E---DYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHH---H---HHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999974 2344455566779999999999865 111 0 22222222322 2567 7888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+. .... +.+..++... ...+++++||+++.|+
T Consensus 124 ~Dl~~~----~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 124 IDLLDE----EELF---ELLKELLKEL----WGKPVFPISALTGEGL 159 (170)
T ss_pred hhcCCc----hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCH
Confidence 999763 1111 2222233221 1346899999999998
No 114
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.5e-17 Score=169.53 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=106.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.....+ .....|+|.+.....++.++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 35899999999999999999997432111 011246676666666777888
Q ss_pred EEEEEeCCCcc---------chHhHH--HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 86 YVTIIDAPGHR---------DFIKNM--ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~---------~~~~~~--~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+.||||||+. +|...+ ...+..+|++|+|+|++++... +....+..+...++| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~-------~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISE-------QDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEEC
Confidence 99999999963 222222 3356789999999999987433 555666666677899 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+|+.+. .......+++...+.... ..+++++||++|.|+.+.
T Consensus 332 ~Dl~~~----~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~l 373 (472)
T PRK03003 332 WDLVDE----DRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDKL 373 (472)
T ss_pred cccCCh----hHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHHH
Confidence 999752 222333444444333222 257899999999998654
No 115
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=1.4e-17 Score=145.78 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=93.1
Q ss_pred EEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEEEe
Q psy13961 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIID 91 (459)
Q Consensus 12 v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liD 91 (459)
++|++|+|||||+++|+.... ......|+|++.....+++.+..+.+||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999963210 0011246777777677777788999999
Q ss_pred CCCccchHhH------HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 92 APGHRDFIKN------MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 92 tpG~~~~~~~------~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
|||+.+|... +...+ ..+|++++|+|+... + +....+..+...++| +++++||+|+.+...
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~-------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~- 118 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--E-------RNLYLTLQLLELGLP-VVVALNMIDEAEKRG- 118 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--h-------hHHHHHHHHHHcCCC-EEEEEehhhhccccc-
Confidence 9999877542 23333 489999999999753 1 233334455667898 788899999976311
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .....+.+.++ .+++++||.+|.|+
T Consensus 119 ---~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~ 145 (158)
T cd01879 119 ---IK---IDLDKLSELLG-----VPVVPTSARKGEGI 145 (158)
T ss_pred ---ch---hhHHHHHHhhC-----CCeEEEEccCCCCH
Confidence 11 11222222223 46899999999998
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=4e-17 Score=145.84 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|+.++|||||+++|+... . .. ...|+...+..+..++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~--~-------------------------~~-------~~~t~~~~~~~~~~~~~ 59 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGE--V-------------------------VH-------TSPTIGSNVEEIVYKNI 59 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--C-------------------------CC-------cCCccccceEEEEECCe
Confidence 46799999999999999999996321 0 00 01233333445666788
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
.+.++||||+.+|...+...+..+|++++|+|+++.. .+. ...+.+. ++.. .++| +++++||+|+.+.
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~---~~~---~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~- 131 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE---RLP---LTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA- 131 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-
Confidence 9999999999999888888899999999999998652 111 1222222 2221 3577 8899999999752
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ..+++.+.+. .......+++++++||++|+|+
T Consensus 132 ~---~~~~i~~~l~----~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 132 M---TPAEISESLG----LTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred C---CHHHHHHHhC----cccccCCceEEEecccCCCCCH
Confidence 1 1223333221 1111123467999999999999
No 117
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=3.3e-17 Score=145.32 Aligned_cols=152 Identities=19% Similarity=0.164 Sum_probs=96.5
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|.+.+...+|+++|+.|+|||||+++|+... .. . .....++.+.....+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~-------------------------~----~~~~t~~~~~~~~~~ 49 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP-------------------------P----GQGATIGVDFMIKTV 49 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCC--CC-------------------------C----CCCCceeeEEEEEEE
Confidence 6655667999999999999999999996321 00 0 000112223333334
Q ss_pred eeCC--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH---HcCCceEEEEEEcc
Q psy13961 81 ETSK--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF---TLGVKQLIVGVNKM 155 (459)
Q Consensus 81 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~---~~~ip~iivviNK~ 155 (459)
...+ ..+.++|+||+.+|...+...+..+|++++|+|++.+. .+. .....+..++ ..++| +++++||+
T Consensus 50 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~ 122 (169)
T cd04114 50 EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFR---CLPEWLREIEQYANNKVI-TILVGNKI 122 (169)
T ss_pred EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECc
Confidence 4444 46788999999999988888899999999999998652 111 1122222222 23577 68889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+.. ....+..+.+. +. ...+++++|+++|.|+
T Consensus 123 D~~~~~---~i~~~~~~~~~---~~-----~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 123 DLAERR---EVSQQRAEEFS---DA-----QDMYYLETSAKESDNV 157 (169)
T ss_pred cccccc---ccCHHHHHHHH---HH-----cCCeEEEeeCCCCCCH
Confidence 997421 11111122221 11 1256899999999998
No 118
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.74 E-value=1.9e-17 Score=128.04 Aligned_cols=82 Identities=38% Similarity=0.588 Sum_probs=78.2
Q ss_pred CeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeE
Q psy13961 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGF 324 (459)
Q Consensus 245 p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~ 324 (459)
||+|+|+++|+.. |++++|+|.+|++++||++++.|++..++|++|++++.++++|.|||+|++.|++++..++++||
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~ 78 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGF 78 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCC
Confidence 6899999999864 89999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEcc
Q psy13961 325 VAGD 328 (459)
Q Consensus 325 vl~~ 328 (459)
+|++
T Consensus 79 vl~~ 82 (82)
T cd04089 79 VLCS 82 (82)
T ss_pred EEeC
Confidence 9984
No 119
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=4.9e-17 Score=146.12 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=96.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+...+|+++|..++|||||+.+|... .. .. ...|+...+..++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~--~~-------------------------~~-------~~pt~g~~~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLG--EI-------------------------VT-------TIPTIGFNVETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC--CC-------------------------cc-------ccCCcceeEEEEEECC
Confidence 44689999999999999999999531 00 00 0112223333456678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.|||+||+++|...+...++.+|++|+|+|+++.. .+. ..++.+.... ..++| ++++.||+|+.+.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~~---~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV---EARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HHH---HHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 89999999999999988888899999999999998641 111 2222222221 13567 8999999999753
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ..++ +...+.-..+....+.++++||++|+|+
T Consensus 134 -~---~~~~----~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 134 -M---NAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred -C---CHHH----HHHHhCccccCCCceEEEeccCCCCCCH
Confidence 1 1122 2222221112223456779999999999
No 120
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.74 E-value=4.1e-17 Score=145.90 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=97.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|..++|||||+.+|.... + .+. ..|+...+..++...
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~----------------------~-----~~~-------~~t~~~~~~~~~~~~ 56 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGE----------------------S-----VTT-------IPTIGFNVETVTYKN 56 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----------------------C-----CCc-------CCccccceEEEEECC
Confidence 346899999999999999999995210 0 010 112323333445567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+.+|...+...+..+|++|+|+|+++.. .+. ...+.+..+. ..++| +++|.||+|+.+.
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~---s~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD---RID---EAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 89999999999999988888899999999999997641 111 3344443332 13567 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .+++.+.+. ........+.++++||++|+|+
T Consensus 130 -~~---~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv 162 (175)
T smart00177 130 -MK---AAEITEKLG----LHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred -CC---HHHHHHHhC----ccccCCCcEEEEEeeCCCCCCH
Confidence 11 122222221 1111223456889999999999
No 121
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=7.1e-17 Score=156.41 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=94.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+....|+++|++|||||||+++|+...-.+ +.... ..|.......+..++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------------------vs~~~------~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISI------------------------VSPKP------QTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceee------------------------cCCCC------CcccccEEEEEEcCC
Confidence 456789999999999999999997432111 11111 111111111122345
Q ss_pred EEEEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 85 FYVTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 85 ~~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
.++.|+||||+.+. ...+...+..+|++++|+|++.+..+ ...+.+..+...+.| +++|+||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-------~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-------GDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-------hHHHHHHHHhhcCCC-EEEEEECCc
Confidence 78999999997543 33445567889999999999874221 445555666666788 788899999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ........+.+. +..+ ..+++++||++|.|+
T Consensus 125 l~~~---~~~l~~~~~~l~---~~~~----~~~i~~iSA~~~~gv 159 (292)
T PRK00089 125 LVKD---KEELLPLLEELS---ELMD----FAEIVPISALKGDNV 159 (292)
T ss_pred CCCC---HHHHHHHHHHHH---hhCC----CCeEEEecCCCCCCH
Confidence 9831 122333333332 2222 246899999999998
No 122
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.73 E-value=1.8e-17 Score=129.59 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=79.1
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC----eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN----LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~----~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
|+|+|+++|++++.|+|++|+|++|.+++||+++++|.+ ..++|++|++++.++++|.|||++++.|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999999999999999999999999999999983 6899999999999999999999999999999999999
Q ss_pred eeEEEcc
Q psy13961 322 RGFVAGD 328 (459)
Q Consensus 322 ~G~vl~~ 328 (459)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 123
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=2.8e-17 Score=144.52 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=95.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
.+|+++|++++|||||+++|+...-. .+...+.+.+.....+..++ .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-------------------------------NQYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------ccCCCceeeeEEEEEEEECCEEE
Confidence 37999999999999999999742110 01122344444444444444 4
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcC--CceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLG--VKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~--ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||||+.+|...+...+..+|++++|+|+++.. .+. +...++... ...+ .| +++++||+|+....
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~- 121 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ---SFD---NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKR- 121 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCE-EEEEEEChhccccC-
Confidence 6899999999999888888899999999999998652 121 222333322 2333 77 89999999995421
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+.. +++++++||.+++|+
T Consensus 122 -~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v 150 (161)
T cd01861 122 -QVST----EEGEKKAKEL-----NAMFIETSAKAGHNV 150 (161)
T ss_pred -ccCH----HHHHHHHHHh-----CCEEEEEeCCCCCCH
Confidence 1111 1222222222 256899999999998
No 124
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.73 E-value=3.6e-17 Score=145.34 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=93.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|..++|||||+++|.... . .. ...|+...+..++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~-------------------------~~-------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F-------------------------MQ-------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C-------------------------CC-------cCCcCceeEEEEEECCEEEE
Confidence 58999999999999999996321 0 00 11233333344566788999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-H---cCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-T---LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~---~~ip~iivviNK~D~~~~~~~~ 164 (459)
++||||+.+|...+...+..+|++++|+|+++.. .+. ...+.+..+. . .+.| +++|.||+|+.+.
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 115 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RVS---EAHSELAKLLTEKELRDAL-LLIFANKQDVAGA---- 115 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HHH---HHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC----
Confidence 9999999999888888889999999999997641 111 2233333222 1 2356 8999999999642
Q ss_pred HHHHHHHHHHHhhhhhcCc-CCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGY-NPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~-~~~~~~~i~iSa~~g~~i 201 (459)
...+++. .+++...+ ....+.++++||++|.|+
T Consensus 116 ~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 116 LSVEEMT----ELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred CCHHHHH----HHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 1122222 22221111 112357889999999999
No 125
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=136.93 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=113.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
++...+|+++|+.++||||+++++.+........ .. .+ .....+|..|+.+.+.+.+..
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~-------------~~-------~~-~s~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEA-------------DA-------SS-VSGKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeec-------------cc-------cc-cccccccceeEeecccceEEc
Confidence 4556799999999999999999998654322210 00 00 000013457888888888766
Q ss_pred C-EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC-CceEEEEEEccCCCCCC
Q psy13961 84 K-FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG-VKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 84 ~-~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~-ip~iivviNK~D~~~~~ 161 (459)
+ +.+.|+|||||++|..++.-.++.++++|++||++.+... ..++.+.++.... +| ++|++||.|+.+.
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-------~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a- 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-------HAEEIIDFLTSRNPIP-VVVAINKQDLFDA- 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-------HHHHHHHHHhhccCCC-EEEEeeccccCCC-
Confidence 5 8999999999999999999999999999999999977211 2355666777777 77 8999999999874
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|..+.+. + +++... .++++|+++|.++++.
T Consensus 137 ~ppe~i~---e----~l~~~~---~~~~vi~~~a~e~~~~ 166 (187)
T COG2229 137 LPPEKIR---E----ALKLEL---LSVPVIEIDATEGEGA 166 (187)
T ss_pred CCHHHHH---H----HHHhcc---CCCceeeeecccchhH
Confidence 5443332 2 222111 2568999999999877
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=5.5e-17 Score=143.75 Aligned_cols=145 Identities=18% Similarity=0.116 Sum_probs=88.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|++|+|||||+++|+..... .....+.|.+.....+++.+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 47999999999999999999742110 00012334555555556667899
Q ss_pred EEEeCCCccch-------H-hHHHHhh-cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccC
Q psy13961 88 TIIDAPGHRDF-------I-KNMITGT-SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMD 156 (459)
Q Consensus 88 ~liDtpG~~~~-------~-~~~~~~~-~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D 156 (459)
+||||||+.+. . ......+ ..+|++|+|+|++.... +.. ....+.+..++.. +.| +++|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998431 1 1112222 34699999999976421 100 0222333344333 677 899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+. ....+ ...+.+. ...+++++||++|.|+
T Consensus 125 l~~~----~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL-----EGEEVLKISTLTEEGV 156 (168)
T ss_pred cCch----hhHHH----HHHhhhh-----ccCceEEEEecccCCH
Confidence 9752 22222 2222211 2457899999999999
No 127
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.73 E-value=4e-17 Score=143.86 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=94.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++++|||||+++|+...-. . ......|.+.......++.....+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------~--~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS---------------------------E--NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---------------------------C--CCCCccceeEEEEEEEECCEEEEE
Confidence 68999999999999999999743110 0 001111222222222333445678
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCCCcH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~~~~ 164 (459)
.+|||||+++|.......++.+|++++|+|+++.. .+. +....+..+... ++| +++++||+|+.+..+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---SFE---KAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 99999999999888877888999999999998652 121 333444444433 466 888999999874211
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+ ++..+....+ ++++++||++|.|+
T Consensus 124 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v 151 (163)
T cd01860 124 VSTE----EAQEYADENG-----LLFFETSAKTGENV 151 (163)
T ss_pred CCHH----HHHHHHHHcC-----CEEEEEECCCCCCH
Confidence 1111 2222333333 46899999999999
No 128
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.73 E-value=3.3e-17 Score=144.20 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE--eeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~ 85 (459)
.+|+++|++++|||||+++|+...-.. +.....+.+.....+ .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-------------------------------DSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-------------------------------CCCCceeeeEEEEEEEECCEEE
Confidence 479999999999999999997431100 001112222222222 22335
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH---HcCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF---TLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~---~~~ip~iivviNK~D~~~~~~ 162 (459)
.+.|||||||++|.......++.+|++++|+|+++... +. +....+...+ ..++| ++++.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---FE---ALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 78999999999998888888999999999999987521 21 2223333332 24677 89999999997421
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .++...+.+..+ ++++++||+++.|+
T Consensus 122 -~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 150 (161)
T cd04113 122 -EVT----FLEASRFAQENG-----LLFLETSALTGENV 150 (161)
T ss_pred -cCC----HHHHHHHHHHcC-----CEEEEEECCCCCCH
Confidence 111 122233333333 47999999999999
No 129
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=4.8e-17 Score=147.34 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=96.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+...+|+++|+.|||||||+++|.... .. ....|+......+..+
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~--------------------------------~~~~T~~~~~~~i~~~ 61 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDR--LA--------------------------------QHVPTLHPTSEELTIG 61 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCC--Cc--------------------------------ccCCccCcceEEEEEC
Confidence 4557899999999999999999996321 00 0011222233445566
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~ 159 (459)
+..+.++|+||+.+|...+...+..+|++++|+|+++.. .+. ...+.+.... ..+.| +++++||+|+..
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~ 134 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RFQ---ESKEELDSLLSDEELANVP-FLILGNKIDLPG 134 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HHH---HHHHHHHHHHcCccccCCC-EEEEEeCCCCCC
Confidence 788999999999999887788889999999999997541 111 2222222221 24578 888899999974
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcC--------cCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIG--------YNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g--------~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+++.+.+... .... -....++++++||++|+|+
T Consensus 135 ~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 135 A----VSEEELRQALGLY-GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred C----cCHHHHHHHhCcc-cccccccccccccCceeEEEEEeEecCCCCh
Confidence 2 1122232222110 0000 0112367899999999999
No 130
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.72 E-value=1.6e-16 Score=141.29 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=90.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
.+|+++|++++|||||+++|+...-.. .....+..+.....+...+ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-------------------------------CcCCccceEEEEEEEEECCEEE
Confidence 479999999999999999997431000 0000111111112233333 4
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH-HHHHH------cCCceEEEEEEccCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA-LLAFT------LGVKQLIVGVNKMDST 158 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~-~~~~~------~~ip~iivviNK~D~~ 158 (459)
.+.+||+||++.|.......++.+|++|+|+|+++... +. ...... .+... .++| +++|+||+|+.
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS---FE---SLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 67799999999999888888999999999999986521 10 111111 11222 2678 88889999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. .. .+++..+.+..+ .++++++|+.+|.|+
T Consensus 123 ~~~~--~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~gv 155 (172)
T cd01862 123 EKRQ--VS----TKKAQQWCQSNG----NIPYFETSAKEAINV 155 (172)
T ss_pred cccc--cC----HHHHHHHHHHcC----CceEEEEECCCCCCH
Confidence 4211 11 122233333333 257899999999998
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=7.3e-17 Score=141.51 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=96.1
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|+.++|||||+++++... .. ....|+......++.....+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV--------------------------------TTIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC--------------------------------CCCCCcCcceEEEEECCEEEE
Confidence 58999999999999999997431 00 011122233344556678999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+|||||+..|.......+..+|++++|+|++... .+. ....++.... ..+.| +++++||+|+...
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~---- 115 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---RIE---EAKEELHKLLNEEELKGVP-LLIFANKQDLPGA---- 115 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCcccCCCc-EEEEeeccCCccc----
Confidence 9999999999887777888999999999998651 111 2333332221 24678 8888999999763
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|.|+
T Consensus 116 ~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 116 LSVSELIEKLG----LEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred cCHHHHHHhhC----hhhccCCcEEEEEeeCCCCCCH
Confidence 12233333322 1112224578999999999998
No 132
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=6.4e-17 Score=142.62 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=92.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|.+|+|||||+++++.... . ....+.. +... .....++....
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~--~------------------------~~~~~t~---~~~~-~~~~~~~~~~~ 50 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYF--V------------------------TDYDPTI---EDSY-TKQCEIDGQWA 50 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCC--C------------------------cccCCCc---cceE-EEEEEECCEEE
Confidence 347999999999999999999975321 0 0000000 0000 01111222235
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~ 161 (459)
.+.+|||||+++|...+...+..+|++++|+|+++.. .+. .....+..+.. .++| +++++||+|+.+..
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~ 123 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQR 123 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCCC-EEEEeeCccccccc
Confidence 7889999999999888888899999999999998652 121 12222222222 3678 88899999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++...+.+..+ ++++++||++|.|+
T Consensus 124 --~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 152 (164)
T cd04145 124 --KVS----REEGQELARKLK-----IPYIETSAKDRLNV 152 (164)
T ss_pred --eec----HHHHHHHHHHcC-----CcEEEeeCCCCCCH
Confidence 001 112233333333 46899999999999
No 133
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=7.9e-17 Score=141.81 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=92.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe----eC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE----TS 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~----~~ 83 (459)
++|+++|..++|||||+++|+...- . .+....+..+.....+. ..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~---------------------------~----~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF---------------------------T----KDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---------------------------C----CCCCCcEEEEEEEEEEEEcCCCC
Confidence 3799999999999999999974210 0 00011122222122222 23
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccCCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D~~~~~ 161 (459)
...+.||||||+++|...+...++.+|++++|+|+++.. .+. .....+..+. ..++| +++|+||+|+....
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 468999999999999888888899999999999998652 121 1122222222 24788 88999999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+.++ ++++++|+++|.|+
T Consensus 123 --~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 151 (162)
T cd04106 123 --VITN----EEAEALAKRLQ-----LPLFRTSVKDDFNV 151 (162)
T ss_pred --CCCH----HHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 1111 22333333334 36899999999998
No 134
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.72 E-value=1.3e-16 Score=140.53 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=93.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
++|+++|++|+|||||+++|+...- .......++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-------------------------------SEQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 4899999999999999999963210 000111223333333344443 5
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+||+||+.+|.......+..+|++|+|+|+++... +. .....+..+.. .++| +++++||+|+....
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~- 121 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQR- 121 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhccccc-
Confidence 78899999999999888888999999999999986521 11 11112222222 3577 89999999987521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+...+. ...+.+..+ ++++++|+.+|.|+
T Consensus 122 -~~~~~~----~~~~~~~~~-----~~~~e~Sa~~~~~i 150 (164)
T smart00175 122 -QVSREE----AEAFAEEHG-----LPFFETSAKTNTNV 150 (164)
T ss_pred -CCCHHH----HHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 111122 222333333 46899999999998
No 135
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=4e-17 Score=166.84 Aligned_cols=140 Identities=24% Similarity=0.300 Sum_probs=104.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++|+|||||+++|+.....+ +. ...|+|.+.....+++.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------v~------~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------VS------DTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------ec------CCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999997432111 11 1247777777778888899999
Q ss_pred EEeCCCc--------cchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 89 IIDAPGH--------RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 89 liDtpG~--------~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
||||||+ +.+...+..++..+|++++|+|+..+..+ ...+.+..++..+.| +++|+||+|+.+.
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~-------~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTP-------EDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCH-------HHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 34555667778899999999999876433 566677778888999 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+. ...+ +..+|+. +++++||.+|.|+
T Consensus 123 ~~-------~~~~----~~~lg~~----~~~~vSa~~g~gv 148 (429)
T TIGR03594 123 DA-------VAAE----FYSLGFG----EPIPISAEHGRGI 148 (429)
T ss_pred cc-------cHHH----HHhcCCC----CeEEEeCCcCCCh
Confidence 21 1111 2234542 4799999999998
No 136
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=9.1e-17 Score=165.36 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=101.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.+|+|||||+++|+.....+ .+...|+|.+.....+++.+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCcE
Confidence 4689999999999999999997421110 1123477888777778888899
Q ss_pred EEEEeCCCccc--------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 87 VTIIDAPGHRD--------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 87 ~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
+.||||||+.. |...+..++..+|++|+|+|++.+..+ ...+.+..++..++| +++|+||+|+.
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~-------~~~~i~~~l~~~~~p-iilV~NK~Dl~ 159 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATA-------TDEAVARVLRRSGKP-VILAANKVDDE 159 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECccCC
Confidence 99999999863 344455677899999999999977432 345556667777889 89999999986
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... . +. .+ + ..+++. ..+++||++|.|+
T Consensus 160 ~~~---~---~~-~~---~-~~~g~~----~~~~iSA~~g~gi 187 (472)
T PRK03003 160 RGE---A---DA-AA---L-WSLGLG----EPHPVSALHGRGV 187 (472)
T ss_pred ccc---h---hh-HH---H-HhcCCC----CeEEEEcCCCCCc
Confidence 521 1 11 11 1 123442 2369999999999
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.72 E-value=5.1e-17 Score=141.40 Aligned_cols=147 Identities=22% Similarity=0.273 Sum_probs=92.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
.||+++|++|+|||||+++|+... .+.+...+++.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-------------------------------FITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-------------------------------CcCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999997432 1112223555555554455666 7
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCC--CchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN--GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~--~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+.+|||||+.+|..........++.++.++|....+.. +... .........+. .+.| +++++||+|+...
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~--~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~--- 123 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLD--VEEILEKQTKEIIHHAE-SNVP-IILVGNKIDLRDA--- 123 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehh--hhhHhHHHHHHHHHhcc-cCCc-EEEEEEcccCCcc---
Confidence 889999999999966655555556666666665432111 1000 01222222222 2778 8999999999762
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ........+...+. .+++++||.+|+|+
T Consensus 124 --~---~~~~~~~~~~~~~~----~~~~~~sa~~~~gv 152 (161)
T TIGR00231 124 --K---LKTHVAFLFAKLNG----EPIIPLSAETGKNI 152 (161)
T ss_pred --h---hhHHHHHHHhhccC----CceEEeecCCCCCH
Confidence 1 23334444444433 35999999999998
No 138
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.71 E-value=3.3e-17 Score=128.25 Aligned_cols=84 Identities=39% Similarity=0.640 Sum_probs=79.4
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecC--CeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPA--NLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~--~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
|+|+|+++|++++.|++++|+|++|++++||++.+.|. +.+.+|++|++++.++++|.|||+|++.|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986 5688999999999999999999999999999888999999
Q ss_pred EEEccC
Q psy13961 324 FVAGDS 329 (459)
Q Consensus 324 ~vl~~~ 329 (459)
++|+++
T Consensus 81 ~vl~~~ 86 (87)
T cd03697 81 MVLAKP 86 (87)
T ss_pred cEEecC
Confidence 999974
No 139
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=1.5e-16 Score=143.14 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=95.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|+.++|||||+.++... .. ... ..|+...+..++..+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~--~~-------------------------~~~-------~~T~~~~~~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLG--EV-------------------------VTT-------IPTIGFNVETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cc-------------------------ccc-------CCccccceEEEEECC
Confidence 34589999999999999999999521 00 000 012222233455677
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HH---cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~---~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+... .. ...| +++|.||.|+.+.
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RIG---DAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 89999999999999888888899999999999997531 121 223333322 11 2456 8999999998752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .+++.+.+. ...+....+.++++||++|+|+
T Consensus 134 -~~---~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 134 -MS---TTEVTEKLG----LHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred -CC---HHHHHHHhC----CCcccCCcEEEEeeeCCCCCCH
Confidence 11 122222221 1112223456779999999999
No 140
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=1.4e-16 Score=143.63 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=97.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|.+|+|||||+++|.... .. . . ..|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~--~~----------------------~-~---------~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR--LA----------------------Q-H---------QPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC--Cc----------------------c-c---------CCccccceEEEEECC
Confidence 456899999999999999999996321 00 0 0 011122223345567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~~ip~iivviNK~D~~~~ 160 (459)
..+.++||||+.++...+..++..+|++++|+|+++.. .+. ...+.+..+ ...+.| +++++||+|+...
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~~---~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RFA---ESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HHH---HHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 89999999999999888888899999999999997641 111 233333222 124778 8999999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcC----cCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIG----YNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g----~~~~~~~~i~iSa~~g~~i 201 (459)
. ..+++.+.+. +..... .......++++||++|+|+
T Consensus 134 -~---~~~~i~~~l~-l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 134 -A---SEDELRYALG-LTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred -C---CHHHHHHHcC-CCcccccccccCCceeEEEEeecccCCCh
Confidence 1 1233333332 111000 0113467999999999998
No 141
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.71 E-value=6.9e-17 Score=142.93 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--eCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--TSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~ 85 (459)
.+|+++|..|+|||||+++|+... . .... ...++++.....+. ....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~-------------------------~~~~----~~t~~~~~~~~~~~~~~~~~ 50 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--F-------------------------TSAF----VSTVGIDFKVKTVFRNDKRV 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--C-------------------------CCCC----CCceeeEEEEEEEEECCEEE
Confidence 589999999999999999997421 0 0000 00111111112222 2236
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||||+++|...+...++.+|++++|+|.++.. .+. +..+.+..+.. .+.| +++|+||+|+.+..
T Consensus 51 ~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~- 122 (165)
T cd01865 51 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER- 122 (165)
T ss_pred EEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc-
Confidence 7899999999999888888899999999999997642 121 23333333333 2456 89999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++..++.+.++ ++++++||++|.|+
T Consensus 123 -~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv 151 (165)
T cd01865 123 -VVS----SERGRQLADQLG-----FEFFEASAKENINV 151 (165)
T ss_pred -ccC----HHHHHHHHHHcC-----CEEEEEECCCCCCH
Confidence 111 112222333333 36899999999999
No 142
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.6e-16 Score=145.29 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee---CC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---SK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~ 84 (459)
.+|+++|.+++|||||+++|+... .. . .....+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~--~~-------------------------~----~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI--FS-------------------------Q----HYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CC-------------------------C----CCCCceeEEEEEEEEEECCCCE
Confidence 479999999999999999997421 00 0 00011112222222333 35
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-------HcCCceEEEEEEccCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-------TLGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-------~~~ip~iivviNK~D~ 157 (459)
..+.||||||+++|...+...++.+|++|+|+|.+... .+. ...+++..+. ..++| +++|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 67899999999999888888889999999999998652 121 1111222221 13577 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. .. ..+++..+.+..++ .+++++||++|.|+
T Consensus 123 ~~~~--~~----~~~~~~~~~~~~~~----~~~~e~Sak~~~~v 156 (201)
T cd04107 123 KKRL--AK----DGEQMDQFCKENGF----IGWFETSAKEGINI 156 (201)
T ss_pred cccc--cc----CHHHHHHHHHHcCC----ceEEEEeCCCCCCH
Confidence 7310 01 12233444444442 46899999999998
No 143
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.71 E-value=7.8e-17 Score=142.87 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=92.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..+|+++|.+++|||||+++++... .. .+....+..+.....+... .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FN-----------------------------PSFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CC-----------------------------cccccCccceEEEEEEEECCEE
Confidence 4799999999999999999996421 00 0000111112222223333 3
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.+|||||+++|.......+..+|++|+|+|+++.. .+. +..+.+..+.. .+.| ++++.||+|+.+..
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~ 124 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 57899999999999888888889999999999998652 121 22223322322 3567 88889999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+..+ .+++++||.+|.|+
T Consensus 125 --~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 153 (167)
T cd01867 125 --VVSK----EEGEALADEYG-----IKFLETSAKANINV 153 (167)
T ss_pred --CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 1111 22223333322 46899999999998
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=6.9e-17 Score=145.52 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=92.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE-eeCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-ETSK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-~~~~ 84 (459)
..++|+++|+.|+|||||++++++..- ....+ ..|.+........ ....
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~---------------------------~~~~~---t~~~~~~~~~~~~~~~~~ 51 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEF---------------------------VNTVP---TKGFNTEKIKVSLGNSKG 51 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc---------------------------CCcCC---ccccceeEEEeeccCCCc
Confidence 357899999999999999999964210 00000 0121111111111 2245
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH----HHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE----HALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e----~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++|+|+|+++... +. .... ........++| +++++||+|+.+.
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~---~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~ 124 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---ME---EAKTELHKITRFSENQGVP-VLVLANKQDLPNA 124 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc
Confidence 789999999999998878778889999999999986411 10 1111 11222335788 8899999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCc-CCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGY-NPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~-~~~~~~~i~iSa~~g~~i 201 (459)
... ++ +..++..... ....++++++||++|+|+
T Consensus 125 -~~~---~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 125 -LSV---SE----VEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred -CCH---HH----HHHHhCccccCCCCceEEEEeecccCCCH
Confidence 111 22 2222211111 112357899999999999
No 145
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=1.4e-16 Score=140.97 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=93.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..+|+++|+.|+|||||+++|+...- .. +.....+.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~---------------------------~~----~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY---------------------------TE----SYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC---------------------------CC----CCCCccceeEEEEEEEECCEE
Confidence 36899999999999999999963210 00 001122222222333333 3
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.+|||||+++|.......++.+|++|+|+|+++.. .+. +..+.+..+.. .+.| ++++.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HHH---hHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 57899999999999888888889999999999998642 121 23333333333 3567 88889999986521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+.. +++++++||++|+|+
T Consensus 124 --~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v 152 (166)
T cd01869 124 --VVDY----SEAQEFADEL-----GIPFLETSAKNATNV 152 (166)
T ss_pred --CCCH----HHHHHHHHHc-----CCeEEEEECCCCcCH
Confidence 1111 2222333332 347999999999999
No 146
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.71 E-value=1.5e-16 Score=145.07 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=94.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--EE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--FY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~ 86 (459)
.|+++|..++|||||+.++.... . ..+....++.+.....++.++ ..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f-----------------------------~~~~~~Ti~~~~~~~~i~~~~~~v~ 50 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--F-----------------------------CEACKSGVGVDFKIKTVELRGKKIR 50 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--C-----------------------------CCcCCCcceeEEEEEEEEECCEEEE
Confidence 58999999999999999996421 0 011111222333333444444 67
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~~ 163 (459)
+.||||+|+++|...+..+++.+|++|+|+|.++.. .|. ....++..+.. .++| +++|.||+|+.+. .
T Consensus 51 l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~---Sf~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~--~ 121 (202)
T cd04120 51 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD--R 121 (202)
T ss_pred EEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--c
Confidence 899999999999988888999999999999998752 221 22233333332 3567 8999999999641 1
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+.. .++..++.+.. .++.++++||++|.|+.+
T Consensus 122 ~v~----~~~~~~~a~~~----~~~~~~etSAktg~gV~e 153 (202)
T cd04120 122 EIS----RQQGEKFAQQI----TGMRFCEASAKDNFNVDE 153 (202)
T ss_pred ccC----HHHHHHHHHhc----CCCEEEEecCCCCCCHHH
Confidence 111 11222222222 124689999999999954
No 147
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=1.9e-16 Score=139.02 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=90.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|.+|+|||||+++|+... .. ....+. .+.+. .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~------------------------~~~~~t---~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FV------------------------DEYDPT---IEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--Cc------------------------CCcCCc---chheE-EEEEEECCEEEEE
Confidence 589999999999999999997421 00 000000 00000 0111122223567
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+|||||+++|...+...+..+|++++|+|.++.. .+. .....+..+ + ..+.| +++|.||+|+.+...
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~- 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTV- 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccee-
Confidence 89999999999988888899999999999998642 121 112222222 2 23677 888999999975211
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+++..+.+..+ ++++++||++|.|+
T Consensus 124 --~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi 150 (162)
T cd04138 124 --S----SRQGQDLAKSYG-----IPYIETSAKTRQGV 150 (162)
T ss_pred --c----HHHHHHHHHHhC-----CeEEEecCCCCCCH
Confidence 1 122333333333 46899999999999
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=1.5e-16 Score=138.90 Aligned_cols=135 Identities=23% Similarity=0.274 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+...... .. ...+.|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------VS------DIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------cc------CCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999997421100 00 123556665556667778899
Q ss_pred EEEeCCCccchHh--------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCC
Q psy13961 88 TIIDAPGHRDFIK--------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDST 158 (459)
Q Consensus 88 ~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~ 158 (459)
+++||||+.++.. .+...+..+|++++|+|++.. .+........ ..+.| +++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 9999999877643 234456789999999999864 3333333333 45677 89999999998
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .. .. .....+++++||.++.|+
T Consensus 121 ~~~----~~---------~~-----~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 121 PDS----EL---------LS-----LLAGKPIIAISAKTGEGL 145 (157)
T ss_pred Ccc----cc---------cc-----ccCCCceEEEECCCCCCH
Confidence 631 10 00 112357899999999998
No 149
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.71 E-value=5.7e-16 Score=137.62 Aligned_cols=148 Identities=17% Similarity=0.224 Sum_probs=93.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--e
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~ 82 (459)
...++|+++|++++|||||+++|+... .. .+....++.+.....+. .
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 51 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNK--FD-----------------------------TQLFHTIGVEFLNKDLEVDG 51 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCC--CC-----------------------------cCcCCceeeEEEEEEEEECC
Confidence 356899999999999999999996321 00 00001112222222233 3
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H------HcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F------TLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~------~~~ip~iivviNK~ 155 (459)
....+.||||||+++|...+...++.+|++++|+|.++.. .+. ...+....+ . ..++| ++++.||+
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 124 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQ---NLSNWKKEFIYYADVKEPESFP-FVVLGNKN 124 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHH---hHHHHHHHHHHhcccccCCCCc-EEEEEECc
Confidence 3457789999999999888888889999999999998652 121 111111111 1 13567 88999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+...... .+++.++.+..++ .+++++||++|+|+
T Consensus 125 Dl~~~~~~-------~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 159 (170)
T cd04116 125 DIPERQVS-------TEEAQAWCRENGD----YPYFETSAKDATNV 159 (170)
T ss_pred cccccccC-------HHHHHHHHHHCCC----CeEEEEECCCCCCH
Confidence 98642211 1233333443332 36899999999998
No 150
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.70 E-value=1e-16 Score=124.46 Aligned_cols=82 Identities=38% Similarity=0.624 Sum_probs=79.2
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
|+|+|+++|++++.|+++.|+|++|++++||++.+.|++...+|++|++++.++++|.|||.|++.|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Ec
Q psy13961 326 AG 327 (459)
Q Consensus 326 l~ 327 (459)
|+
T Consensus 81 l~ 82 (83)
T cd03696 81 LS 82 (83)
T ss_pred Ec
Confidence 97
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=2.3e-16 Score=144.31 Aligned_cols=163 Identities=24% Similarity=0.275 Sum_probs=99.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|++|+|||||+++|....- ......|+|.+... +...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~--~~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNH--YDWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceE--Eeec--
Confidence 467999999999999999999963210 01112355554432 2332
Q ss_pred EEEEEeCCCc-----------cchHhHHHH----hhcccCEEEEEEECCCCce-ecccc---CCCchHHHHHHHHHcCCc
Q psy13961 86 YVTIIDAPGH-----------RDFIKNMIT----GTSQADCAVLIVAAGTGEF-EAGIS---KNGQTREHALLAFTLGVK 146 (459)
Q Consensus 86 ~~~liDtpG~-----------~~~~~~~~~----~~~~aD~~ilVvda~~g~~-~~~~~---~~~qt~e~~~~~~~~~ip 146 (459)
.+.+|||||+ +.|...+.. ++..+|++++|+|++.... ...+. ...++.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 344433322 3456789999999864210 00000 011345556666677999
Q ss_pred eEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcC----CceeeEeecCCCCCCccccccCCCCCccccccccccCC
Q psy13961 147 QLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN----PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGK 222 (459)
Q Consensus 147 ~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~----~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~ 222 (459)
+++|+||+|+.+. . .+..+++.. .++.. ....+++++||++| |+
T Consensus 133 -~iiv~NK~Dl~~~----~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi--------------------- 180 (201)
T PRK04213 133 -PIVAVNKMDKIKN----R--DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-GI--------------------- 180 (201)
T ss_pred -eEEEEECccccCc----H--HHHHHHHHH---HhcCCccccccCCcEEEEecccC-CH---------------------
Confidence 7888999999752 1 112222222 22321 01136899999999 99
Q ss_pred CChhhHHHhccccCCC
Q psy13961 223 ADGKCLIEALDAILPP 238 (459)
Q Consensus 223 ~~g~~Ll~~l~~~~~~ 238 (459)
++|++.|.+.+++
T Consensus 181 ---~~l~~~l~~~~~~ 193 (201)
T PRK04213 181 ---EELKEAIRKRLHE 193 (201)
T ss_pred ---HHHHHHHHHhhcC
Confidence 7788888776543
No 152
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=8.8e-17 Score=142.71 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=94.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|++|+|||||+++|+...-... .+ ...|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~------------------------~~-----~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV------------------------HD-----LTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC------------------------CC-----CccceeEEEEEEEECCEEEE
Confidence 46999999999999999999974211000 00 01122222222223333457
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~~ 163 (459)
+.||||||+++|.......+..+|++++|+|+++.. .+. ....++..++. .++| +++|.||+|+.+..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~-- 125 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRR-- 125 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCc-EEEEEECccccccc--
Confidence 899999999999888888889999999999998642 121 22223333333 3577 89999999997421
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++...+.+..+ .+++++||++++|+
T Consensus 126 ~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i 154 (168)
T cd01866 126 EVS----YEEGEAFAKEHG-----LIFMETSAKTASNV 154 (168)
T ss_pred CCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 011 122333333333 46899999999999
No 153
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=3.8e-16 Score=137.32 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=92.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|++++|||||+++|+...-.. . .....+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--------------------------D---LAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--------------------------c---cCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999997421100 0 01112222222222233334678
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~~ 163 (459)
.++||||+++|.......++.+|++++|+|+++.. .+. ....++..+. ..+.| +++++||+|+...+..
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD---TFT---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHH---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 99999999999888778888999999999998652 111 1222222222 23577 7888999999743211
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. + +...+.+.. +++++++|+++|+|+
T Consensus 125 ~---~----~~~~~~~~~-----~~~~~~~Sa~~~~gi 150 (161)
T cd01863 125 R---E----EGLKFARKH-----NMLFIETSAKTRDGV 150 (161)
T ss_pred H---H----HHHHHHHHc-----CCEEEEEecCCCCCH
Confidence 1 1 222233322 357999999999998
No 154
>KOG0092|consensus
Probab=99.70 E-value=1e-16 Score=138.33 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=114.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--e
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~ 82 (459)
....+|+++|..++|||||+-|+... ...+- .-.||..+|..-. .
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~-------------------------------~F~e~--~e~TIGaaF~tktv~~ 49 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKD-------------------------------QFHEN--IEPTIGAAFLTKTVTV 49 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhC-------------------------------ccccc--cccccccEEEEEEEEe
Confidence 45689999999999999999998631 11110 1234544443322 2
Q ss_pred --CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEE--EEEccCCC
Q psy13961 83 --SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV--GVNKMDST 158 (459)
Q Consensus 83 --~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iiv--viNK~D~~ 158 (459)
...++.||||+|+++|-...-.+++.|++||+|.|.++. .+|. +.+.++..+....-|.+++ |.||+|+.
T Consensus 50 ~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~---~SF~---~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 50 DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE---ESFE---KAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccH---HHHH---HHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 236788999999999988888899999999999999875 3332 5555666665554465655 67999998
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
+. .+..++ +...+.+..| ..|+.+||++|.|+ ..|+..|.+.+|+
T Consensus 124 ~~--R~V~~~----ea~~yAe~~g-----ll~~ETSAKTg~Nv------------------------~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 124 ER--REVEFE----EAQAYAESQG-----LLFFETSAKTGENV------------------------NEIFQAIAEKLPC 168 (200)
T ss_pred hc--ccccHH----HHHHHHHhcC-----CEEEEEecccccCH------------------------HHHHHHHHHhccC
Confidence 61 122233 3344444444 36999999999999 7888888887776
Q ss_pred CCCC
Q psy13961 239 SRPT 242 (459)
Q Consensus 239 ~~~~ 242 (459)
....
T Consensus 169 ~~~~ 172 (200)
T KOG0092|consen 169 SDPQ 172 (200)
T ss_pred cccc
Confidence 5443
No 155
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=1.8e-16 Score=169.89 Aligned_cols=143 Identities=23% Similarity=0.344 Sum_probs=101.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+|+|+.....+ ....|+|++.....+++.+.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v-------------------------------gn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV-------------------------------GNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------CCCCCceEeeEEEEEEcCce
Confidence 35789999999999999999996321110 11258888888888888899
Q ss_pred EEEEEeCCCccchHhH--------H--HHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 86 YVTIIDAPGHRDFIKN--------M--ITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~--------~--~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
.+.++||||+.+|... . ...+ ..+|++++|+|+++.. +....+..+..+++| +++++|
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlN 120 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALN 120 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEE
Confidence 9999999999877421 1 1122 3699999999998641 333444566778999 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+.. .+. .+++++-+.+| ++++|+||.+|+|+
T Consensus 121 K~Dl~~~~----~i~---id~~~L~~~LG-----~pVvpiSA~~g~GI 156 (772)
T PRK09554 121 MLDIAEKQ----NIR---IDIDALSARLG-----CPVIPLVSTRGRGI 156 (772)
T ss_pred chhhhhcc----CcH---HHHHHHHHHhC-----CCEEEEEeecCCCH
Confidence 99987421 111 12222333344 36899999999998
No 156
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.70 E-value=3.7e-16 Score=138.21 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|..|+|||||+++++... ... .. . +. -+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~--------------------~~-~---~t---~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRE--------------------SY-I---PT---IEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC--------------------Cc-C---Cc---chheE-EEEEEECCEEEEE
Confidence 689999999999999999997421 000 00 0 00 00000 1111222334678
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEccCCCCCC
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~D~~~~~ 161 (459)
.++||||+++|.......+..+|++|+|+|.+.... +. .....+..++. .++| +++|.||+|+.+..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---LE---ELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998877777889999999999986521 11 22333333332 3578 88889999996511
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.... .++++++||++|+|+
T Consensus 125 --~v~~----~~~~~~~~~~-----~~~~~e~SA~~g~~v 153 (165)
T cd04140 125 --EVSS----NEGAACATEW-----NCAFMETSAKTNHNV 153 (165)
T ss_pred --eecH----HHHHHHHHHh-----CCcEEEeecCCCCCH
Confidence 1111 1111122222 246899999999999
No 157
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.70 E-value=4.2e-16 Score=135.89 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|++++|||||+++|+...... . .....+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~---------------------------~--~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE---------------------------N--YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC---------------------------c--cCCceeeeeEEEEEEECCEEEEE
Confidence 479999999999999999997421110 0 00111222222222222234688
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCCCcH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~~~~ 164 (459)
.++|+||+..|.......+..+|++++|+|+++.. .+. .....+..+... +.| +++++||+|+..+. +
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~--~ 122 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SFE---NLDKWLKELKEYAPENIP-IILVGNKIDLEDQR--Q 122 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCc-EEEEEEcccccccc--c
Confidence 99999999999998888899999999999998642 121 233344444443 477 88999999996211 1
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .+++..+.... .++++.+|+.++.|+
T Consensus 123 ~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i 150 (159)
T cd00154 123 VS----TEEAQQFAKEN-----GLLFFETSAKTGENV 150 (159)
T ss_pred cc----HHHHHHHHHHc-----CCeEEEEecCCCCCH
Confidence 11 22333333332 357999999999998
No 158
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=7.2e-17 Score=146.43 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=91.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee--eeEEeeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKFETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~ 85 (459)
.+|+++|.+|+|||||+++|+...-... . ....+..+.. ...+.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~--------------------------~----~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG--------------------------N----FIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc--------------------------C----cCCcccceeEEEEEEECCEEE
Confidence 4799999999999999999964211000 0 0001111111 122222346
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.||||||+.+|.......++.+|++|+|+|++... .+. .....+..+.. .++| +++|+||+|+.....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~ 123 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SFD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERV 123 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhccc
Confidence 7899999999999887878888999999999998642 111 22333333333 2567 889999999964210
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .++...+.+..+ ++++++||++|.|+
T Consensus 124 --~~----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v 151 (191)
T cd04112 124 --VK----REDGERLAKEYG-----VPFMETSAKTGLNV 151 (191)
T ss_pred --cC----HHHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 01 122233333333 47899999999999
No 159
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=2.7e-16 Score=141.06 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=92.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe----
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---- 81 (459)
..++|+++|..++|||||+++|.... .. . +....+..+.....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~--~~-------------------------~----~~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNK--FN-------------------------P----KFITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------c----cCCCccceEEEEEEEEEcCc
Confidence 35799999999999999999996421 00 0 0000111111111111
Q ss_pred --------eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEE
Q psy13961 82 --------TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLI 149 (459)
Q Consensus 82 --------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~ii 149 (459)
.....+.||||||+++|...+...++.+|++++|+|+++.. .+. ....++..+.. .+.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---SFL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 12367899999999999888888899999999999998641 121 22233333332 2456 88
Q ss_pred EEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 150 VGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 150 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|.||+|+.+.. +.. .++...+.+..+ ++++++||++|.|+
T Consensus 125 iv~nK~Dl~~~~--~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v 165 (180)
T cd04127 125 LCGNKADLEDQR--QVS----EEQAKALADKYG-----IPYFETSAATGTNV 165 (180)
T ss_pred EEEeCccchhcC--ccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 999999997520 111 122333333333 46899999999998
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.6e-16 Score=139.46 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=93.1
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++|+|||||+++|..... .. ..|... .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~---------------------------~~--------~~~~~v-----~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT---------------------------LA--------RKTQAV-----EFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc---------------------------cC--------ccceEE-----EECCC--C
Confidence 799999999999999999852100 00 011111 11111 2
Q ss_pred EEeCCCc----cchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGH----RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~----~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+|||||. .++...+..++..+|++++|+|++.+... .....+.. ..+.| +++++||+|+.+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~-------~~~~~~~~--~~~~~-ii~v~nK~Dl~~~---- 106 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR-------LPAGLLDI--GVSKR-QIAVISKTDMPDA---- 106 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc-------cCHHHHhc--cCCCC-eEEEEEccccCcc----
Confidence 7999996 46677777788999999999999876311 22222221 24667 8899999999652
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
..+ .+.++++..++ ..|++++||++|+|+ ++|++.|.+...
T Consensus 107 -~~~----~~~~~~~~~~~---~~p~~~~Sa~~g~gi------------------------~~l~~~l~~~~~ 147 (158)
T PRK15467 107 -DVA----ATRKLLLETGF---EEPIFELNSHDPQSV------------------------QQLVDYLASLTK 147 (158)
T ss_pred -cHH----HHHHHHHHcCC---CCCEEEEECCCccCH------------------------HHHHHHHHHhch
Confidence 222 23344444554 257999999999999 778888776654
No 161
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.70 E-value=1.7e-16 Score=124.57 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=77.1
Q ss_pred ccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEE-eCCeEEeee
Q psy13961 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLV-PSKPMCVES 414 (459)
Q Consensus 336 ~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~-l~~~i~~~~ 414 (459)
++++|+|++.||+++.+|.+||+|++|+++..++|++..+.. +++++||.+.|+|+ +.+|+|+|+
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence 478999999999999999999999999999999999998742 68999999999999 589998876
Q ss_pred cCCCCCcceEEEEECCceEEEEEEEee
Q psy13961 415 FSEFPPLGRFAVRDMRQTVAVGVIKVN 441 (459)
Q Consensus 415 ~~~~~~~grfilrd~~~tva~G~V~~v 441 (459)
+|||+||++ +|+|+|+|+++
T Consensus 68 ------~grf~lr~g-~tva~G~I~~~ 87 (87)
T cd03708 68 ------GQRLIFREG-RTKGVGEVTKV 87 (87)
T ss_pred ------CCeEEEECC-CcEEEEEEEEC
Confidence 689999888 79999999874
No 162
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.69 E-value=1e-16 Score=138.08 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=81.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++|+|||||+++|+... + . ...|+.. ++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~----------------------~------~-------~~~t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE----------------------I------L-------YKKTQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc----------------------c------c-------cccceeE-----EEcC---e
Confidence 79999999999999999996321 0 0 0112211 1222 5
Q ss_pred EEeCCCcc----chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHR----DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~----~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+|||||+. .+...+...++.+|++|+|+|++++... +..+.+ ...+.| +++++||+|+.+..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~-------~~~~~~---~~~~~p-~ilv~NK~Dl~~~~--- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESR-------FPPGFA---SIFVKP-VIGLVTKIDLAEAD--- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcC-------CChhHH---HhccCC-eEEEEEeeccCCcc---
Confidence 89999983 4455555567899999999999876321 222222 223457 78889999996521
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... ++..++++..+. .+++++||++|+|+
T Consensus 105 ~~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 105 VDI----ERAKELLETAGA----EPIFEISSVDEQGL 133 (142)
T ss_pred cCH----HHHHHHHHHcCC----CcEEEEecCCCCCH
Confidence 111 223333333333 26899999999998
No 163
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.69 E-value=2.2e-16 Score=140.62 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=95.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|+.|+|||||+++|....- .. ...|.......++..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~---------------------------~~-------~~~t~g~~~~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI---------------------------SH-------ITPTQGFNIKTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC---------------------------cc-------cCCCCCcceEEEEECC
Confidence 3468999999999999999999963210 00 0112222233455567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~~ip~iivviNK~D~~~~ 160 (459)
..+.++|+||+.+|...+...+..+|++++|+|+.... .+. .....+... ...++| +++++||+|+.+.
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RLE---EAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 89999999999998888888889999999999997531 110 222222221 234688 8888999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+ ....+.....+++++||++|+|+
T Consensus 131 ----~~~~~i~~~l----~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 131 ----APAEEIAEAL----NLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred ----CCHHHHHHHc----CCcccCCCeEEEEEeECCCCCCH
Confidence 1122232222 11122223456889999999999
No 164
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=3.3e-16 Score=138.37 Aligned_cols=145 Identities=16% Similarity=0.190 Sum_probs=90.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE--eeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~ 85 (459)
++|+++|++++|||||+++|+...- ..+....++.+.....+ .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-------------------------------VSKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCccceeEEEEEEEECCeEE
Confidence 4799999999999999999974210 00001112222222222 23346
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--------cCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--------LGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--------~~ip~iivviNK~D~ 157 (459)
.+.||||||+++|...+...+..+|++|+|+|.++.. .+. ...+.+..+.. .+.| +++|+||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 8899999999999888777889999999999998652 111 12222222221 2456 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. ... .++...+....+ .+++++||++|+|+
T Consensus 123 ~~~~--~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi 155 (168)
T cd04119 123 TKHR--AVS----EDEGRLWAESKG-----FKYFETSACTGEGV 155 (168)
T ss_pred cccc--ccC----HHHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 7310 011 112222223222 46899999999999
No 165
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.69 E-value=1.6e-16 Score=140.47 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=92.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
.+|+++|.+++|||||+++|+...-.. +....++.+.....+...+ .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~ 52 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------DSKSTIGVEFATRSIQIDGKTI 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999996321000 0011222222333333333 5
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||||+++|.......+..+|++|+|+|+++.. .+. ...+.+..++. .++| +++|+||.|+....
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~- 124 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR- 124 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc-
Confidence 7889999999999888888889999999999998642 111 22223333322 2467 88999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.... .++++++||++|.|+
T Consensus 125 -~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v 153 (165)
T cd01868 125 -AVPT----EEAKAFAEKN-----GLSFIETSALDGTNV 153 (165)
T ss_pred -cCCH----HHHHHHHHHc-----CCEEEEEECCCCCCH
Confidence 1111 2222333222 346899999999999
No 166
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=3.4e-16 Score=136.58 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=93.3
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEE
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTI 89 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~l 89 (459)
|+++|+.|+|||||+++|....-. .+. -.|+......+......+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--------------------------~~~-------~~t~~~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--------------------------EDT-------IPTVGFNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--------------------------cCc-------cCCCCcceEEEEECCEEEEE
Confidence 789999999999999999632100 000 01222333344556688999
Q ss_pred EeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCCcHH
Q psy13961 90 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 90 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
+||||+.+|...+...+..+|++++|+|++... .+. +..+.+..+. ..++| +++++||+|+.+. .
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~----~ 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT---ALE---AAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA----L 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----c
Confidence 999999999988888899999999999997531 110 2333333322 24678 7888999998752 1
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..+++.+.+. +.. .....++++++|+++|.|+
T Consensus 118 ~~~~~~~~~~--~~~--~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 118 SVDELIEQMN--LKS--ITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CHHHHHHHhC--ccc--ccCCceEEEEEEeccCCCh
Confidence 1122222221 011 1123467899999999998
No 167
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.69 E-value=1.3e-16 Score=141.20 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|+.++|||||+++|... ... ...+ ...|.........++.....+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~-------------------------~~~~--~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFM-------------------------ADCP--HTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCC-------------------------CCCC--cccceeEEEEEEEECCEEEEE
Confidence 68999999999999999999632 110 0000 001111111112222234578
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCCcH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~~~ 164 (459)
.||||||+++|...+...++.+|++|+|+|.++.. .+. ...+.+...+. .+.| +++|.||+|+.+.. +
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~--~ 124 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR--D 124 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--C
Confidence 99999999999988888899999999999998752 121 22233333322 2456 88899999997521 1
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .++...+.+.. +.+++++||++|+|+
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~e~Sa~~~~~i 152 (166)
T cd04122 125 VT----YEEAKQFADEN-----GLLFLECSAKTGENV 152 (166)
T ss_pred cC----HHHHHHHHHHc-----CCEEEEEECCCCCCH
Confidence 11 12222333332 247999999999999
No 168
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=1.9e-16 Score=139.05 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=91.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CCEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKFYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~~ 87 (459)
+|+++|.+|+|||||+++|+...- ... ..|+...+..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL---------------------------VTT-------IPTVGFNVEMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc---------------------------ccc-------cCccCcceEEEEeCCceEE
Confidence 489999999999999999974210 000 0111111122222 34689
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~~~~~~~ 163 (459)
.++||||+.+|...+...+..+|++|+|+|+++.. .+. .....+... + ..+.| +++++||+|+... .
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~- 117 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---RLD---ESQKELKHILKNEHIKGVP-VVLLANKQDLPGA-L- 117 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---HHH---HHHHHHHHHHhchhhcCCC-EEEEEECcccccC-c-
Confidence 99999999999888888889999999999998652 110 222222221 1 24678 8999999999642 1
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..+++...+. +..+.. ..+++++++||++|+|+
T Consensus 118 --~~~~i~~~~~--~~~~~~-~~~~~~~~~Sa~~~~gv 150 (160)
T cd04156 118 --TAEEITRRFK--LKKYCS-DRDWYVQPCSAVTGEGL 150 (160)
T ss_pred --CHHHHHHHcC--CcccCC-CCcEEEEecccccCCCh
Confidence 1122322221 011111 12467899999999999
No 169
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.69 E-value=2.7e-16 Score=138.74 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=89.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+...- . .+..+.... .. .....+......+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~------------------------~~~~~t~~~---~~-~~~~~~~~~~~~l 50 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--V------------------------DDYDPTIED---SY-RKQIEIDGEVCLL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--C------------------------cccCCchhh---hE-EEEEEECCEEEEE
Confidence 3799999999999999999974321 0 000000000 00 0011122234578
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+|||||+++|...+...+..+|++++|+|++... .+. ........+ + ..+.| +++|.||+|+.+...
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~- 122 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERV- 122 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccce-
Confidence 89999999999888888889999999999998642 111 111212222 1 13577 888999999975210
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .+....+.+..+ .+++++||++|.|+
T Consensus 123 -~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i 150 (164)
T smart00173 123 -VS----TEEGKELARQWG-----CPFLETSAKERVNV 150 (164)
T ss_pred -Ec----HHHHHHHHHHcC-----CEEEEeecCCCCCH
Confidence 01 112222333222 57899999999999
No 170
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=6.4e-16 Score=139.54 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=97.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
..++|+++|..++|||||+.++.... . ..+....++.+.....+..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS--T-----------------------------ESPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--C-----------------------------CCCCCCcceeEEEEEEEEECCE
Confidence 45899999999999999999996310 0 00111112223222233333
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
...+.||||||+++|...+...++.+|++|||+|.++.. .|. ....++..+.. .++| +|++.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~---Sf~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~- 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRW---SFD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK- 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEECccchhc-
Confidence 367899999999999988888889999999999998752 222 33333333332 3677 8999999999641
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. ..++.+.+.+..+ ++++++||++|.|+
T Consensus 126 -~~v----~~~~~~~~a~~~~-----~~~~e~SAk~g~~V 155 (189)
T cd04121 126 -RQV----ATEQAQAYAERNG-----MTFFEVSPLCNFNI 155 (189)
T ss_pred -cCC----CHHHHHHHHHHcC-----CEEEEecCCCCCCH
Confidence 011 1233444444433 46999999999999
No 171
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.69 E-value=1.5e-16 Score=133.98 Aligned_cols=129 Identities=24% Similarity=0.307 Sum_probs=90.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|.++|+++||||||+++|..... ....|..+.+ .=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i~~--------~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAIEY--------YD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCccceeEe--------cc
Confidence 4799999999999999999953210 1112332221 11
Q ss_pred EEEeCCC----ccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPG----HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+||||| +..|...++.....||.+++|.||++.. ...--.++...+.| +|-||||+|+...
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~~--- 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPSD--- 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCccc---
Confidence 3699999 4567777777788999999999998752 11122345567788 8999999999831
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.++.+ ..+++|+..|+. .++++|+.+|+|+
T Consensus 105 ~~~i~----~a~~~L~~aG~~----~if~vS~~~~eGi 134 (143)
T PF10662_consen 105 DANIE----RAKKWLKNAGVK----EIFEVSAVTGEGI 134 (143)
T ss_pred hhhHH----HHHHHHHHcCCC----CeEEEECCCCcCH
Confidence 23333 445566677874 3699999999999
No 172
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=2.3e-16 Score=169.83 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=105.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.....+. ....|.|.+.....+++++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCC
Confidence 347999999999999999999975321110 01236666665566777888
Q ss_pred EEEEEeCCCcc---------chHhH--HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 86 YVTIIDAPGHR---------DFIKN--MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~---------~~~~~--~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+.||||||+. +|... ...++..+|++++|+|++.+..+ +....+..+...+.| +++|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~-------~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISE-------QDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEEc
Confidence 89999999964 23322 23446789999999999987433 666666666677899 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+|+.+. ...+.+.+.+...+... ...+++++||++|.|+.+.
T Consensus 571 ~DL~~~----~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~L 612 (712)
T PRK09518 571 WDLMDE----FRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNRL 612 (712)
T ss_pred hhcCCh----hHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHHH
Confidence 999752 22233333343332222 2346799999999998543
No 173
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.69 E-value=4.9e-16 Score=138.19 Aligned_cols=147 Identities=18% Similarity=0.295 Sum_probs=91.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--CCEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET--SKFY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~ 86 (459)
+|+++|..++|||||+++++... .. + +....+..+.....+.. ....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~-------------------------~----~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FD-------------------------K----NYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-------------------------C----CCCCceeeEEEEEEEEECCEEEE
Confidence 68999999999999999997421 00 0 00011111222222332 2467
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC---CceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG---VKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~---ip~iivviNK~D~~~~~~~ 163 (459)
+.||||||+++|...+...++.+|++++|+|+++.. .+. ...+++..+.... .+.+++|.||+|+.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~--- 121 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---SLE---HTRQWLEDALKENDPSSVLLFLVGTKKDLSSP--- 121 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc---
Confidence 999999999999888888899999999999997641 111 2223333332222 2337889999999652
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.......++...+.+.++ .+++++||++|.|+
T Consensus 122 -~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v 153 (170)
T cd04108 122 -AQYALMEQDAIKLAAEMQ-----AEYWSVSALSGENV 153 (170)
T ss_pred -ccccccHHHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 111111222333333333 36899999999999
No 174
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=3.8e-16 Score=138.35 Aligned_cols=141 Identities=14% Similarity=0.201 Sum_probs=88.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEE--eeeeEEe--eC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID--IALWKFE--TS 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~--~~~~~~~--~~ 83 (459)
.+|+++|..++|||||+++++... .. . ....|+. .....+. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~--~~-------------------------~------~~~~t~~~~~~~~~~~~~~~ 47 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE--FE-------------------------K------KYVATLGVEVHPLDFHTNRG 47 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CC-------------------------C------CCCCceeeEEEEEEEEECCE
Confidence 379999999999999999997321 00 0 0011222 2222222 23
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-c-CCceEEEEEEccCCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-L-GVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~-~ip~iivviNK~D~~~~~ 161 (459)
...+.+|||||+++|.......+..+|++|+|+|.++.. .+. .....+..+.. . ++| +++|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~ 120 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TYK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK 120 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCc-EEEEEEchhccccc
Confidence 468899999999998776667778899999999998762 111 11122222222 2 688 89999999997421
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
- . . +..++.+. ...+++++||++|+|+
T Consensus 121 ~---~-~----~~~~~~~~-----~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 121 V---K-A----KQITFHRK-----KNLQYYEISAKSNYNF 147 (166)
T ss_pred C---C-H----HHHHHHHH-----cCCEEEEEeCCCCCCh
Confidence 0 0 1 11112221 2357999999999999
No 175
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=3.1e-16 Score=138.05 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=89.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEE-eeeeEEe--eCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID-IALWKFE--TSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~--~~~ 84 (459)
.+|+++|.+|+|||||+++++... .. ....+ |+. .....+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~------------------------~~~~~-------t~~~~~~~~~~~~~~~ 48 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FV------------------------EKYDP-------TIEDSYRKQIEVDGQQ 48 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CC------------------------cccCC-------chhhhEEEEEEECCEE
Confidence 589999999999999999997421 10 00000 110 0011122 223
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...++.+|++++|+|.++.. .++ .....+..+.. .++| ++++.||+|+.+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 121 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDE 121 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 56789999999999888888889999999999997642 111 22222222222 3578 8889999999652
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +.. .++...+.+..+ .+++++||++|.|+
T Consensus 122 ~--~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 151 (163)
T cd04136 122 R--VVS----REEGQALARQWG-----CPFYETSAKSKINV 151 (163)
T ss_pred c--eec----HHHHHHHHHHcC-----CeEEEecCCCCCCH
Confidence 1 111 112222222222 47899999999999
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=5.3e-16 Score=158.80 Aligned_cols=141 Identities=27% Similarity=0.280 Sum_probs=100.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+.... +.+.+ ..|+|.+..+..+++.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~------------------------~~v~~------~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD------------------------AIVAD------TPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc------------------------eeeCC------CCCCcccceEEEEEECCcEE
Confidence 4799999999999999999964221 11111 23667777777778888999
Q ss_pred EEEeCCCccc----h----HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 88 TIIDAPGHRD----F----IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 88 ~liDtpG~~~----~----~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+|||||+.+ + ...+..++..+|++|+|+|+..+... ...+...+++..+.| +++|+||+|+.+
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~-------~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTP-------ADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 3 33345567889999999999876322 445556677778999 899999999754
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +.. ..++ ..+++. .++++||.+|.|+
T Consensus 124 ~---~~~----~~~~----~~lg~~----~~~~iSa~~g~gv 150 (435)
T PRK00093 124 E---EAD----AYEF----YSLGLG----EPYPISAEHGRGI 150 (435)
T ss_pred c---hhh----HHHH----HhcCCC----CCEEEEeeCCCCH
Confidence 1 111 1111 123442 3689999999998
No 177
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.68 E-value=6e-16 Score=141.30 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=94.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
..++|+++|+.|+|||||+++|+... .. + +....+..+.....+...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~-------------------------~----~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FS-------------------------G----SYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------C----CcCccccceeEEEEEEECCE
Confidence 46899999999999999999996321 00 0 0001112222223333333
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||++.|...+...+..+|++++|+|+++.. .+. ...+++..+.. ...| +++|+||+|+.+..
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 57889999999999888888889999999999998652 121 23333333332 2466 78889999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++...+.+..+ ++++++||++|.|+
T Consensus 127 --~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~gi 155 (199)
T cd04110 127 --VVE----TEDAYKFAGQMG-----ISLFETSAKENINV 155 (199)
T ss_pred --ccC----HHHHHHHHHHcC-----CEEEEEECCCCcCH
Confidence 001 122233333332 46899999999999
No 178
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.68 E-value=4.7e-16 Score=137.93 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|..++|||||+++|... .. . ....|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~-------------------------~------~~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP-------------------------K------KVAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC-------------------------c------cccCcccceEEEEEECCEEEE
Confidence 4899999999999999999632 00 0 011222223344566788999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCCcH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~~~ 164 (459)
++||||+.+|...+..++..+|++|+|+|+++.. .+. .....+..+.. .++| +++++||+|+.+.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~~---~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 115 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RVQ---EVKEILRELLQHPRVSGKP-ILVLANKQDKKNA---- 115 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HHH---HHHHHHHHHHcCccccCCc-EEEEEeCCCCcCC----
Confidence 9999999999988889999999999999998641 111 23333332222 3677 8899999999763
Q ss_pred HHHHHHHHHHHhhhhhcCc-CCceeeEeecCCCCC
Q psy13961 165 ARFEEIKKEVSGYIKKIGY-NPATVAFVPISGWHG 198 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~-~~~~~~~i~iSa~~g 198 (459)
....++.+.+. +..+.- ....++++++||++|
T Consensus 116 ~~~~~i~~~~~--l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 116 LLGADVIEYLS--LEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CCHHHHHHhcC--cccccCCCCceEEEEEeEceeC
Confidence 11222333221 111110 012467899999998
No 179
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=6.5e-16 Score=140.73 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=85.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
++|+++|..|+|||||+++|+... .. . +....++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~--f~-------------------------~----~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE--FP-------------------------E----EYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC--CC-------------------------c----ccCCccccccceeEEEECCEEE
Confidence 479999999999999999997421 00 0 0000111111111223333 5
Q ss_pred EEEEEeCCCccchHh--------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH------HcCCceEEEE
Q psy13961 86 YVTIIDAPGHRDFIK--------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF------TLGVKQLIVG 151 (459)
Q Consensus 86 ~~~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~------~~~ip~iivv 151 (459)
.+.||||||+.+|.. .....+..+|++|+|+|+++.. .++ .....+..+. ..++| +++|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SFH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 788999999876521 1334567899999999998652 111 1111222221 24577 8899
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.||+|+..... .. .+++..+.++. .+++++++||++|.|+
T Consensus 123 gNK~Dl~~~~~--~~----~~~~~~~~~~~----~~~~~~e~Sak~g~~v 162 (198)
T cd04142 123 GNKRDQQRHRF--AP----RHVLSVLVRKS----WKCGYLECSAKYNWHI 162 (198)
T ss_pred EECcccccccc--cc----HHHHHHHHHHh----cCCcEEEecCCCCCCH
Confidence 99999965211 11 11222222211 1357999999999999
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=7.7e-16 Score=140.10 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=93.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|++|+|||||+++|+... .+. ......|.|....+... +..
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~-~~~----------------------------~~~~~~~~t~~~~~~~~---~~~ 71 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK-NLA----------------------------RTSKTPGRTQLINFFEV---NDK 71 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC-Ccc----------------------------cccCCCCceeEEEEEec---CCe
Confidence 4789999999999999999997421 000 00111244555444332 368
Q ss_pred EEEEeCCCcc----------chHhHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 87 VTIIDAPGHR----------DFIKNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 87 ~~liDtpG~~----------~~~~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
+.||||||+. +|.......+ ..++++++|+|++.+..+ ...+.+..+...++| +++++|
T Consensus 72 l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-------~~~~i~~~l~~~~~~-~iiv~n 143 (196)
T PRK00454 72 LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKE-------LDLQMIEWLKEYGIP-VLIVLT 143 (196)
T ss_pred EEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCH-------HHHHHHHHHHHcCCc-EEEEEE
Confidence 9999999962 3333333333 345788999998765221 333445566678899 788899
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+. ...+...+++...+... ..+++|+||++++|+
T Consensus 144 K~Dl~~~----~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi 182 (196)
T PRK00454 144 KADKLKK----GERKKQLKKVRKALKFG-----DDEVILFSSLKKQGI 182 (196)
T ss_pred CcccCCH----HHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCH
Confidence 9999752 23344445555554432 346899999999998
No 181
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=3e-16 Score=143.90 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=87.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
+..+|+++|++|||||||+++|+....... ...+.|++.....+.+.+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 88 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE-------------------------------DQLFATLDPTTRRLRLPDG 88 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC-------------------------------CccceeccceeEEEEecCC
Confidence 457999999999999999999974310000 001223333334444444
Q ss_pred EEEEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviN 153 (459)
..+.||||||+.+. ...+...+..+|++++|+|++..... .+...+...+... ++| +++|+|
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~N 161 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVLN 161 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEEE
Confidence 38999999998431 11222335679999999999865321 0222333333333 567 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+. .... ..+.. ...+++++||++|.|+
T Consensus 162 K~Dl~~~----~~~~-------~~~~~-----~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 162 KIDLLDD----EELE-------ERLEA-----GRPDAVFISAKTGEGL 193 (204)
T ss_pred ccccCCh----HHHH-------HHhhc-----CCCceEEEEcCCCCCH
Confidence 9999762 1111 11111 2356899999999998
No 182
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=1.3e-15 Score=134.04 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=93.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|++|+|||||+++|+...-. ..... ...+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~------------------------~~~~~------~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKIS------------------------IVSPK------PQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceE------------------------eccCC------CCceeceEEEEEEcCCe
Confidence 3578999999999999999999742110 00000 11122222222344567
Q ss_pred EEEEEeCCCccchH--------hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDFI--------KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.+|||||+.+.. ......+..+|++++|+|++... . ......+..+...+.| +++++||+|+
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~-~------~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI-G------EGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc-C------chHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 89999999976432 23445578899999999998651 1 1344455556666788 7888999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .....+..+.+. ... ...+++++|++++.++
T Consensus 124 ~~~---~~~~~~~~~~~~---~~~----~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 124 VKD---KEDLLPLLEKLK---ELG----PFAEIFPISALKGENV 157 (168)
T ss_pred ccc---HHHHHHHHHHHH---hcc----CCCceEEEEeccCCCh
Confidence 731 122233223222 211 1246899999999998
No 183
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=5.8e-16 Score=143.19 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=91.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC---C
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---K 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~ 84 (459)
++|+++|..++|||||+++|+... .. .+....++.+.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~--~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG--FG-----------------------------KSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC--CC-----------------------------CCCCCceeEEEEEEEEEeCCCCE
Confidence 479999999999999999996321 00 0001112223322333332 4
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc------CCceEEEEEEccCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL------GVKQLIVGVNKMDST 158 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~------~ip~iivviNK~D~~ 158 (459)
..+.||||||++.|.......++.+|++|+|+|+++.. .++ ...+++..+... +.| +++|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~~---~~~~w~~~l~~~~~~~~~~~p-iilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SFE---NLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhccccCCCce-EEEEEECcccc
Confidence 68899999999998888888889999999999998652 121 222333333322 234 88899999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. +. ..++...+.+..+ .+++++||++|+|+
T Consensus 123 ~~~--~v----~~~~~~~~~~~~~-----~~~~~iSAktg~gv 154 (215)
T cd04109 123 HNR--TV----KDDKHARFAQANG-----MESCLVSAKTGDRV 154 (215)
T ss_pred ccc--cc----CHHHHHHHHHHcC-----CEEEEEECCCCCCH
Confidence 410 11 1122333333333 36789999999999
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=6.7e-16 Score=166.27 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=103.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|++|+|||||+++|+..... .+. ...|+|.+......++.+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~------------------------iv~------~~pGvT~d~~~~~~~~~~~~ 324 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREA------------------------VVE------DTPGVTRDRVSYDAEWAGTD 324 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCce------------------------eec------CCCCeeEEEEEEEEEECCEE
Confidence 468999999999999999999742111 111 12478888777778888999
Q ss_pred EEEEeCCCccc--------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 87 VTIIDAPGHRD--------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 87 ~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
+.+|||||+.. |...+..++..+|++|+|+|++.+..+ ...+.+..++..++| +++|+||+|+.
T Consensus 325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~-------~d~~i~~~Lr~~~~p-vIlV~NK~D~~ 396 (712)
T PRK09518 325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTS-------TDERIVRMLRRAGKP-VVLAVNKIDDQ 396 (712)
T ss_pred EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHhcCCC-EEEEEECcccc
Confidence 99999999763 455566778899999999999876322 445566777788999 89999999986
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .. ...+ ..+++. ..+++||++|.|+
T Consensus 397 ~~~------~~----~~~~-~~lg~~----~~~~iSA~~g~GI 424 (712)
T PRK09518 397 ASE------YD----AAEF-WKLGLG----EPYPISAMHGRGV 424 (712)
T ss_pred cch------hh----HHHH-HHcCCC----CeEEEECCCCCCc
Confidence 521 11 1111 123442 2469999999999
No 185
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=7.4e-16 Score=136.45 Aligned_cols=149 Identities=20% Similarity=0.202 Sum_probs=91.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|+.|+|||||+++|+... .. ...+. .....++.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~--~~-------------------------~~~~~-~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEE--FP-------------------------ENVPR-VLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CC-------------------------ccCCC-cccceEeee---eecCCeEEE
Confidence 379999999999999999997421 00 00000 000112211 122345789
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCCCCcH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAFT--LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~~--~~ip~iivviNK~D~~~~~~~~ 164 (459)
.+|||||+.+|...+...+..+|++++|+|+++... +. +..+ ++..++. .+.| +++|+||+|+.+.. ..
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-ch
Confidence 999999999888877778899999999999986521 11 1111 2233332 3677 89999999997631 11
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+++..+.+.+.- -.+++++||++|.|+
T Consensus 122 ~---~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v 152 (166)
T cd01893 122 A---GLEEEMLPIMNEFRE---IETCVECSAKTLINV 152 (166)
T ss_pred h---HHHHHHHHHHHHHhc---ccEEEEeccccccCH
Confidence 0 112222222222211 126899999999998
No 186
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.67 E-value=4.8e-16 Score=119.63 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=75.9
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
|||+|+++|+..+.|+.++|+|++|.+++||++.+.|.+..++|++|++++.+++.|.|||+|++.|++ ..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~--~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLED--EIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECC--ccccCCCCE
Confidence 689999999988888889999999999999999999999999999999999999999999999999984 678999999
Q ss_pred Ec
Q psy13961 326 AG 327 (459)
Q Consensus 326 l~ 327 (459)
||
T Consensus 79 l~ 80 (81)
T cd03695 79 IV 80 (81)
T ss_pred Ee
Confidence 97
No 187
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=5.2e-16 Score=137.23 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=89.7
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEE
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTI 89 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~l 89 (459)
|+++|..++|||||+.+|+...- . .+ ...|+......+...+..+.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~-------------------------~~-------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L-------------------------ES-------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c-------------------------cc-------ccccCCcceEEEeeCCeEEEE
Confidence 78999999999999999974210 0 00 011222222345567789999
Q ss_pred EeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 90 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 90 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
|||||+.+|...+...++.+|++|+|+|+++.. .+. ..++.+..+. ..++| +++|.||+|+... ...
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~~---~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~----~~~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RLP---LARQELHQLLQHPPDLP-LVVLANKQDLPAA----RSV 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCCCCCc-EEEEEeCcCCcCC----CCH
Confidence 999999999988888899999999999997642 111 2233333232 24677 8999999999752 112
Q ss_pred HHHHHHHHhhhhhcCcCCceeeEeecCCCC
Q psy13961 168 EEIKKEVSGYIKKIGYNPATVAFVPISGWH 197 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~ 197 (459)
.++.+.+. +..+. ....++++++||++
T Consensus 118 ~~i~~~~~--~~~~~-~~~~~~~~~~Sa~~ 144 (164)
T cd04162 118 QEIHKELE--LEPIA-RGRRWILQGTSLDD 144 (164)
T ss_pred HHHHHHhC--Chhhc-CCCceEEEEeeecC
Confidence 22222221 11111 11346788998887
No 188
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=9.3e-16 Score=141.40 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=92.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+...+|+++|+.++|||||+++|+... .. .. ....|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~--~~-------------------------~~---~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VE-------------------------DL---APTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC--CC-------------------------Cc---CCCceeEEEEEEEEECCEE
Confidence 456899999999999999999997421 00 00 0011222222222222234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH-HHHHH----cCCceEEEEEEccCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA-LLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~-~~~~~----~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...++.+|++|+|+|+++... +. ...+.+ ..+.. .+.| +++|+||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 678999999999999888888999999999999986521 11 111112 11221 3567 788899999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +.. .++...+....+ ++++++||++|.|+
T Consensus 135 ~~--~i~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v 165 (211)
T PLN03118 135 ER--DVS----REEGMALAKEHG-----CLFLECSAKTRENV 165 (211)
T ss_pred cC--ccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 21 111 112222222222 46899999999998
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.67 E-value=7.6e-16 Score=140.53 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=87.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--EE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--FY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~ 86 (459)
+|+++|+.|+|||||+++|+... ... .. ...+.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~------------------------~~------~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEP------------------------KY------RRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc------------------------cC------CCchhhheeEEEEECCEEEE
Confidence 58999999999999999997421 000 00 0000011112233333 57
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCC
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~ 162 (459)
+.||||||+.+|......++..+|++|+|+|+++.. .+. .....+..+. ..++| +++++||+|+.....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~ 121 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEER 121 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCc-EEEEEEccccccccc
Confidence 889999999999887777888999999999998652 111 1211111111 14688 888999999975211
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
....+... +... .. ...+++++||++|.|+
T Consensus 122 -~v~~~~~~----~~~~-~~---~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 122 -QVPAKDAL----STVE-LD---WNCGFVETSAKDNENV 151 (198)
T ss_pred -cccHHHHH----HHHH-hh---cCCcEEEecCCCCCCH
Confidence 11111111 1111 11 1246899999999999
No 190
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=7.4e-16 Score=139.52 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=92.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|+.|+|||||+.+++...- . ....+ ..+.+.. ....++...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~--~------------------------~~~~~---t~~~~~~-~~~~~~~~~ 52 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHF--I------------------------DEYDP---TIEDSYR-KQCVIDEET 52 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C------------------------cCcCC---chhhEEE-EEEEECCEE
Confidence 4568999999999999999999974210 0 00000 0011110 111223334
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++++|+|+++.. .+. ...+++..+.. .++| ++++.||+|+.+.
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~ 125 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSE 125 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 57889999999999998888899999999999998752 121 22222222221 2677 8889999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +... ++...+.+.++ .+++++||++|.|+
T Consensus 126 ~--~i~~----~~~~~~~~~~~-----~~~~e~Sak~~~gi 155 (189)
T PTZ00369 126 R--QVST----GEGQELAKSFG-----IPFLETSAKQRVNV 155 (189)
T ss_pred c--ccCH----HHHHHHHHHhC-----CEEEEeeCCCCCCH
Confidence 1 0011 11222222222 46899999999999
No 191
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=2e-15 Score=135.72 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=92.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--CE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--KF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~ 85 (459)
++|+++|..++|||||+.+++... | ..+....+..+.....+..+ ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~----------------------f---------~~~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE----------------------F---------DEDYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC----------------------C---------CCCCCCccceEEEEEEEEECCEEE
Confidence 479999999999999999997421 0 00000111112211223333 36
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||+|+++|...+...++.+|++++|+|.++.. .+. ...+++..++.. ..| |+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~---~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~-~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLN---SIKEWYRQARGFNKTAIP--ILVGTKYDLFAD-L 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCE--EEEEEchhcccc-c
Confidence 7899999999999888888889999999999998652 121 222333434332 344 466899999631 1
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
....-..+.++..++.+..+ .+++++||++|+|+
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v 154 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK-----APLIFCSTSHSINV 154 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 11111122334444444433 46899999999999
No 192
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=2.8e-16 Score=138.75 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=90.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee-eeEEeeC--C
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA-LWKFETS--K 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~--~ 84 (459)
.+|+++|.+|+|||||+++++.. ... +.. ..|+... ...+... .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~-------------------------~~~------~~t~~~~~~~~~~~~~~~ 48 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFV-------------------------EKY------DPTIEDSYRKQVEVDGQQ 48 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCC-------------------------ccc------CCcchheEEEEEEECCEE
Confidence 58999999999999999999732 110 000 0011100 1122333 4
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...++.+|++++|+|.+... .+. ...+.+..+. ..++| +++++||+|+.+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 121 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDE 121 (164)
T ss_pred EEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhc
Confidence 56789999999999998888899999999999987542 111 1222222222 23578 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ... ++...+.+..+ ++++++||++|.|+
T Consensus 122 ~~--~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 151 (164)
T cd04175 122 RV--VGK----EQGQNLARQWG-----CAFLETSAKAKINV 151 (164)
T ss_pred cE--EcH----HHHHHHHHHhC-----CEEEEeeCCCCCCH
Confidence 10 011 11222223322 47899999999999
No 193
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.4e-16 Score=149.84 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=92.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CCEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKFY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~ 86 (459)
-.|+++|.+|||||||+++|+.....+. + ..+.|.......+++ +...
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va-------------------------~------ypfTT~~p~~G~v~~~~~~~ 207 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------D------YPFTTLHPNLGVVRVDDYKS 207 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------C------CCCceeCceEEEEEeCCCcE
Confidence 4789999999999999999974321111 0 023466666655665 4568
Q ss_pred EEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEc
Q psy13961 87 VTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNK 154 (459)
Q Consensus 87 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK 154 (459)
++++||||..+ +...+++.+..+|++|+|+|++.... ++ +.......+.. .+.| +++|+||
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~e---~~~~~~~EL~~~~~~L~~kp-~IIV~NK 280 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---VE---DYKTIRNELEKYSPELADKP-RILVLNK 280 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---HH---HHHHHHHHHHHhhhhcccCC-eEEEEEC
Confidence 99999999742 34456677788999999999985421 10 22222222322 3677 7888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+.. .... +.+..+++.. ..+++++||++++|+
T Consensus 281 iDL~~~~---~~~~---~~~~~~~~~~-----~~~i~~iSAktg~GI 316 (335)
T PRK12299 281 IDLLDEE---EERE---KRAALELAAL-----GGPVFLISAVTGEGL 316 (335)
T ss_pred cccCCch---hHHH---HHHHHHHHhc-----CCCEEEEEcCCCCCH
Confidence 9997521 1111 1122222222 246899999999999
No 194
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.66 E-value=7.6e-16 Score=139.88 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
++|+++|++++|||||+++|+...-. .+.. ....|.+. ....+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~--------------------------~~~~--~~t~~~~~--~~~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL--------------------------VGPY--QNTIGAAF--VAKRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC--------------------------CcCc--ccceeeEE--EEEEEEECCEEE
Confidence 47999999999999999999742100 0000 00011111 111233333 4
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccCCCCCCCc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D~~~~~~~ 163 (459)
.+.||||||+++|.......+..+|++++|+|.++.. .+. .....+..++.. +.| +++|+||+|+.+....
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SFE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 6779999999988777777778999999999997641 111 222333333333 577 8999999998642100
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... ..+++.++....+ .+++++||++|.|+
T Consensus 124 ~~~v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv 154 (193)
T cd04118 124 LRQV--DFHDVQDFADEIK-----AQHFETSSKTGQNV 154 (193)
T ss_pred cCcc--CHHHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 0000 0123333333332 46899999999998
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=4.7e-16 Score=143.46 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=76.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|..++|||||+.+|+... | .+ .-.|+...+....+....+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~----------------------f-----~~-------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR----------------------F-----KD-------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC----------------------C-----CC-------CCCccceEEEEEEeeEEEE
Confidence 479999999999999999997321 0 00 0113322333334456789
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
.||||||++.|.......++.+|++|+|+|+++.. .|. ...+.+..+.. .++| +|+|.||+|+.+
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~ 114 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTE 114 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 99999999999888888889999999999998651 121 12222222222 3467 899999999975
No 196
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=8e-16 Score=153.27 Aligned_cols=148 Identities=12% Similarity=0.070 Sum_probs=91.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-EEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-FYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~~ 87 (459)
.|+++|.+|||||||+++|+.....+. ...+.|.......+...+ ..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs-------------------------------~~p~TT~~p~~Giv~~~~~~~i 209 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVA-------------------------------DYPFTTLVPNLGVVRVDDERSF 209 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------CCCCCccCcEEEEEEeCCCcEE
Confidence 799999999999999999974321111 112445555555555554 469
Q ss_pred EEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEcc
Q psy13961 88 TIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKM 155 (459)
Q Consensus 88 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~ 155 (459)
.|+||||..+ ....+++.+..+|++++|||++.......+ .+....+..+.. .+.| +++|+||+
T Consensus 210 ~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~---e~~~~l~~eL~~~~~~L~~kP-~IlVlNKi 285 (390)
T PRK12298 210 VVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPV---ENARIIINELEKYSPKLAEKP-RWLVFNKI 285 (390)
T ss_pred EEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChH---HHHHHHHHHHHhhhhhhcCCC-EEEEEeCC
Confidence 9999999753 334566778899999999998621000000 022222233332 3578 78889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+. ..+ .+.+..+.+..++ ..+++++||++++|+
T Consensus 286 Dl~~~----~el---~~~l~~l~~~~~~---~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 286 DLLDE----EEA---EERAKAIVEALGW---EGPVYLISAASGLGV 321 (390)
T ss_pred ccCCh----HHH---HHHHHHHHHHhCC---CCCEEEEECCCCcCH
Confidence 99752 222 2223333333332 135899999999999
No 197
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.66 E-value=1.6e-15 Score=134.88 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=89.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..+|+++|+.|+|||||+++|+... . +.+....+..+.....+... .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F-----------------------------PERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCccccceeEEEEEEEEEECCeE
Confidence 4689999999999999999996321 0 00011112222222333333 3
Q ss_pred EEEEEEeCCCccchHh-HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q psy13961 85 FYVTIIDAPGHRDFIK-NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~ 159 (459)
..+.+|||||+++|.. .+...++.+|++++|+|++.... +. ....++..+.. .++| +++|.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 6889999999999874 35556788999999999987531 21 22233333332 2578 888899999864
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCC---CCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWH---GDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~---g~~i 201 (459)
... . .. ++...+.+.. +++++++||++ ++|+
T Consensus 124 ~~~--~-~~---~~~~~~~~~~-----~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 124 QIQ--V-PT---DLAQRFADAH-----SMPLFETSAKDPSENDHV 157 (170)
T ss_pred hcC--C-CH---HHHHHHHHHc-----CCcEEEEeccCCcCCCCH
Confidence 210 0 01 1122222222 25789999999 5555
No 198
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.66 E-value=1.5e-15 Score=135.62 Aligned_cols=150 Identities=22% Similarity=0.276 Sum_probs=105.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
+++..+|+++|..+||||||+++|... .. .+ ...|+......+...
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~--~~-------------------------~~-------~~pT~g~~~~~i~~~ 56 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNG--EI-------------------------SE-------TIPTIGFNIEEIKYK 56 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSS--SE-------------------------EE-------EEEESSEEEEEEEET
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhc--cc-------------------------cc-------cCcccccccceeeeC
Confidence 467899999999999999999999521 10 00 122444555667788
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~ 159 (459)
+..+.++|.+|+..+...+..++..+|++|+|||+++.. .+ .+.++.+..+. ..++| ++|++||+|+.+
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~---~l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE---RL---QEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG---GH---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccce---ee---cccccchhhhcchhhcccce-EEEEeccccccC
Confidence 999999999999999888889999999999999998641 11 13444443332 23577 888899999976
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+++.+.+. +..+. ....+.++++||.+|+|+
T Consensus 130 ~----~~~~~i~~~l~--l~~l~-~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 130 A----MSEEEIKEYLG--LEKLK-NKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp S----STHHHHHHHTT--GGGTT-SSSCEEEEEEBTTTTBTH
T ss_pred c----chhhHHHhhhh--hhhcc-cCCceEEEeeeccCCcCH
Confidence 3 12233333321 12222 135678999999999998
No 199
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.66 E-value=9.1e-16 Score=134.72 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=89.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--eCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--TSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~ 85 (459)
.+|+++|..++|||||+++|+...-... ....++.......+. ....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK-------------------------------HESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-------------------------------cCCccceeEEEEEEEECCEEE
Confidence 4799999999999999999974311000 001111112122222 2234
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||||++.|.......+..+|++++|+|.+++.. ++ +....+..++. .++| +++++||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~- 121 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---FQ---KVKKWIKELKQMRGNNIS-LVIVGNKIDLERQR- 121 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc-
Confidence 78999999999988777777889999999999987621 11 22222222222 2577 88889999997421
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... +++..+.+..+ .+++++|++++.|+
T Consensus 122 -~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi 150 (162)
T cd04123 122 -VVSK----SEAEEYAKSVG-----AKHFETSAKTGKGI 150 (162)
T ss_pred -CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 1111 12222333323 46789999999998
No 200
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.66 E-value=1.6e-15 Score=120.49 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=78.2
Q ss_pred cceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEE
Q psy13961 337 TQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMC 411 (459)
Q Consensus 337 ~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~ 411 (459)
+++|+|++.||++ +.+|++||++.+|+++.++.|++..+. .+++|++||.+.|+|+|++|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~-------------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPP-------------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCC-------------CCcEeCCCCEEEEEEEECCcEE
Confidence 6899999999997 579999999999999999999998761 2678999999999999999999
Q ss_pred eeecCCCCCcceEEEEECCceEEEEEEEee
Q psy13961 412 VESFSEFPPLGRFAVRDMRQTVAVGVIKVN 441 (459)
Q Consensus 412 ~~~~~~~~~~grfilrd~~~tva~G~V~~v 441 (459)
+++ +|||+||++++|+|+|+|+++
T Consensus 70 ~~~------g~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEK------GQRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred Eee------CCEEEEEECCEEEEEEEEEeC
Confidence 987 479999999999999999874
No 201
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.66 E-value=1.1e-15 Score=134.86 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=89.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|.+++|||||+.+++... ... . .+.. ... .......+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~--------------------~--~~~t--~~~----~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FIE--------------------K--YDPT--IED----FYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--------------------C--CCCc--hhh----eEEEEEEECCEEEEE
Confidence 589999999999999999997421 100 0 0000 000 000111112223467
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~~ 163 (459)
.||||||+++|...+...+..+|++++|+|.++.. .+. ...+.+..+.. .++| +++|.||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~-- 122 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TFQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESER-- 122 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhcC--
Confidence 89999999999888888889999999999998652 111 22222222222 4688 88899999986421
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... ++...+.+..+ ++++++||++|.|+
T Consensus 123 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 151 (163)
T cd04176 123 EVSS----AEGRALAEEWG-----CPFMETSAKSKTMV 151 (163)
T ss_pred ccCH----HHHHHHHHHhC-----CEEEEecCCCCCCH
Confidence 1111 11122222222 46899999999998
No 202
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=5.4e-16 Score=140.54 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=88.7
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|.+|+|||||+++|+... ... +..+.. +... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~------------------------~~~~t~---~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE------------------------TYDPTI---EDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc------------------------cCCCch---HhhE-EEEEEECCEEEEEE
Confidence 48999999999999999997421 110 000000 0000 00011122234688
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEccCCCCCCC
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~D~~~~~~ 162 (459)
||||||+++|......+++.+|++|+|+|.++... +. .....+..+.. .++| +++|.||+|+.+.
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~-- 121 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE-- 121 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc--
Confidence 99999999999888888999999999999976521 21 22223322221 3567 8889999999641
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.... +...+.+.++ ++++++||++|.|+
T Consensus 122 ~~v~~~----~~~~~~~~~~-----~~~~e~SAk~~~~v 151 (190)
T cd04144 122 REVSTE----EGAALARRLG-----CEFIEASAKTNVNV 151 (190)
T ss_pred CccCHH----HHHHHHHHhC-----CEEEEecCCCCCCH
Confidence 111111 1222333333 46899999999999
No 203
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=1e-15 Score=135.91 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=90.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|+.|+|||||+++|+...-. . ...+ ...........+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~-------------------------~~~~----~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-T-------------------------EYVP----TVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-C-------------------------CCCC----ceeeeeEEEEEECCEEEEE
Confidence 48999999999999999999743110 0 0000 0000001111122334578
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCCCcHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.+|||||+++|.......+..+|++++|+|+++.. .+.. ...+++..+.. .++| +++|+||+|+.+......
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS---SFEN--VKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHH---HHHH--HHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhh
Confidence 99999999998766666678899999999998641 1110 11222333322 2478 899999999986321100
Q ss_pred H-----HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 166 R-----FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~-----~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ..-..++...+....++ .+++++||++|+|+
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi 161 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGV 161 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCH
Confidence 0 00002233333333332 37999999999999
No 204
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.66 E-value=1.1e-15 Score=136.39 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee---eeEEeeC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA---LWKFETS 83 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~---~~~~~~~ 83 (459)
+++|+++|..++|||||+.+++.. ... +. ...|+... ...++..
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~--~f~-------------------------~~------~~~t~~~~~~~~~~~~~~ 47 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTN--AFP-------------------------GE------YIPTVFDNYSANVMVDGK 47 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcC--CCC-------------------------Cc------CCCcceeeeEEEEEECCE
Confidence 368999999999999999999742 110 00 00111100 1112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|.++.. .+. ... .++..+.. .++| +++|.||+|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~ 120 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 120 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccC
Confidence 467889999999999887777888999999999998652 221 121 22232222 2577 8999999999642
Q ss_pred CCcHHHHHH------HHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEE------IKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+..+...+ ..++...+.+.++ .++++++||++|+|+
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i 163 (174)
T cd01871 121 KDTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGL 163 (174)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCH
Confidence 111111110 0122222333332 247899999999999
No 205
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.65 E-value=1.6e-15 Score=149.48 Aligned_cols=140 Identities=21% Similarity=0.210 Sum_probs=89.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CCE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKF 85 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~ 85 (459)
..+|+++|++|+|||||+++|+... .+ ..+ ..+.|.+.....+.. ++.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~------------------------v~~------~~~tT~d~~~~~i~~~~~~ 237 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VY------------------------AAD------QLFATLDPTTRRLDLPDGG 237 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-ee------------------------ecc------CCccccCCEEEEEEeCCCc
Confidence 4789999999999999999997421 10 011 124556665566665 467
Q ss_pred EEEEEeCCCcc-c-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEc
Q psy13961 86 YVTIIDAPGHR-D-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~-~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK 154 (459)
.+.|+||||+. + -+..+...+..||++++|+|+++..... +.......+..+ +.| +++|+||
T Consensus 238 ~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~------~~~~~~~~L~~l~~~~~p-iIlV~NK 310 (351)
T TIGR03156 238 EVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREE------QIEAVEKVLEELGAEDIP-QLLVYNK 310 (351)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHH------HHHHHHHHHHHhccCCCC-EEEEEEe
Confidence 99999999982 1 1223444577899999999998652210 221122333333 577 8899999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+. .... .+ .. + ..+++++||++|.|+
T Consensus 311 ~Dl~~~----~~v~----~~---~~--~----~~~~i~iSAktg~GI 340 (351)
T TIGR03156 311 IDLLDE----PRIE----RL---EE--G----YPEAVFVSAKTGEGL 340 (351)
T ss_pred ecCCCh----HhHH----HH---Hh--C----CCCEEEEEccCCCCH
Confidence 999752 1111 11 11 1 125799999999998
No 206
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=2.7e-15 Score=134.04 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=90.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee-EEeeCC--
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW-KFETSK-- 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~-~~~~~~-- 84 (459)
++|+++|..++|||||+.++++.. .. +. .-.|+...+. .+..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~-------------------------~~------~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FP-------------------------SE------YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC-------------------------CC------CCCceeeeeEEEEEECCEE
Confidence 589999999999999999997421 00 00 0112211111 222333
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...++.+|++|+|+|.++.. .+. ...+ ++..++. .++| +++|.||+|+.+..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDP 121 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhCh
Confidence 67889999999999877777888999999999998652 121 2222 2222322 3577 89999999986521
Q ss_pred CcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+.+ .++...+.+..+ .+.++++||++|.|+
T Consensus 122 ---~~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v 163 (175)
T cd01874 122 ---STIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGL 163 (175)
T ss_pred ---hhHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCH
Confidence 111111 111222222222 257999999999999
No 207
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=6.5e-16 Score=157.46 Aligned_cols=137 Identities=23% Similarity=0.240 Sum_probs=94.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|++|+|||||+++|+.....+ +. ...|.|.+.....+..++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------v~------~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI------------------------VT------DIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------cC------CCCCcccccEEEEEEECCe
Confidence 45799999999999999999997432111 11 1246677776677778889
Q ss_pred EEEEEeCCCccchHh--------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDFIK--------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.|+||||+.++.. .+...+..+|++++|+|++.+... +..+.+.. ..+.| +++|+||+|+
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~-------~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTE-------EDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCh-------hHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 999999999976532 234467889999999999865321 22222222 35677 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. ... .. ...+++++||++|+|+
T Consensus 334 ~~~~----~~~----------~~-----~~~~~i~iSAktg~GI 358 (449)
T PRK05291 334 TGEI----DLE----------EE-----NGKPVIRISAKTGEGI 358 (449)
T ss_pred cccc----hhh----------hc-----cCCceEEEEeeCCCCH
Confidence 7521 000 10 1246899999999998
No 208
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.65 E-value=1.8e-15 Score=134.82 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=91.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEeeC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFETS 83 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~~ 83 (459)
..+|+++|..++|||||+.+++... .. .. ...|+...+ ..+...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~--f~-------------------------~~------~~~t~~~~~~~~~~~~~~ 48 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHS--FP-------------------------DY------HDPTIEDAYKQQARIDNE 48 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CC-------------------------CC------cCCcccceEEEEEEECCE
Confidence 3689999999999999999997421 10 00 001111111 112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~ 159 (459)
...+.||||||+++|...+...+..+|++|+|+|.++.. .+. ...+.+..+.. .++| +++|.||+|+.+
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~ 121 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SFQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLES 121 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhh
Confidence 357899999999999888888899999999999998752 221 22222222222 3578 899999999864
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+... ++...+.+.. +++++++||++|.|+
T Consensus 122 ~--~~v~~----~~~~~~a~~~-----~~~~~e~Sa~~~~~v 152 (172)
T cd04141 122 Q--RQVTT----EEGRNLAREF-----NCPFFETSAALRHYI 152 (172)
T ss_pred c--CccCH----HHHHHHHHHh-----CCEEEEEecCCCCCH
Confidence 2 01111 1222233333 347999999999999
No 209
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.65 E-value=1.9e-15 Score=142.12 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=89.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceE-Eee--eeEEeeCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI-DIA--LWKFETSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~--~~~~~~~~ 84 (459)
.+|+++|..++|||||+++++... .. +. .-.|+ +.. ...+....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~--f~-------------------------~~------y~pTi~d~~~k~~~i~~~~ 47 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR--FE-------------------------EQ------YTPTIEDFHRKLYSIRGEV 47 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC--CC-------------------------CC------CCCChhHhEEEEEEECCEE
Confidence 379999999999999999997321 00 00 00011 111 11222234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------------cCCceEEEEE
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------------LGVKQLIVGV 152 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------------~~ip~iivvi 152 (459)
+.+.||||||+++|......++..+|++|+|+|.++.. .|+ .....+..+.. .++| +|+|.
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivg 120 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFE---EVCRLREQILETKSCLKNKTKENVKIP-MVICG 120 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEE
Confidence 68899999999999776666778999999999998652 221 11222222211 2577 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+... .+...+ ++.+++... ..++++++||++|.|+
T Consensus 121 NK~Dl~~~--~~v~~~----ei~~~~~~~----~~~~~~evSAktg~gI 159 (247)
T cd04143 121 NKADRDFP--REVQRD----EVEQLVGGD----ENCAYFEVSAKKNSNL 159 (247)
T ss_pred ECccchhc--cccCHH----HHHHHHHhc----CCCEEEEEeCCCCCCH
Confidence 99999741 111222 333333211 1357899999999999
No 210
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=2.2e-15 Score=147.14 Aligned_cols=148 Identities=19% Similarity=0.179 Sum_probs=90.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-E
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-F 85 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~ 85 (459)
.-.|+++|.+|||||||+++|+.....+. + ....|.......++..+ .
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------~------y~fTT~~p~ig~v~~~~~~ 205 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------D------YPFTTLVPNLGVVRVDDGR 205 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------C------CCCCccCCEEEEEEeCCce
Confidence 35789999999999999999974321111 0 01234444444455555 8
Q ss_pred EEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEE
Q psy13961 86 YVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVN 153 (459)
Q Consensus 86 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviN 153 (459)
.+.|+||||+.+ .....++.+..+|++++|+|++.......++ +.......+.. .+.| +++|+|
T Consensus 206 ~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e---~l~~l~~EL~~~~~~l~~kp-~IIV~N 281 (329)
T TIGR02729 206 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE---DYEIIRNELKKYSPELAEKP-RIVVLN 281 (329)
T ss_pred EEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHH---HHHHHHHHHHHhhhhhccCC-EEEEEe
Confidence 999999999853 3344566677899999999997531110010 11111122221 3677 788899
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+. ...++..+++. +.++ .+++++||++++|+
T Consensus 282 K~DL~~~----~~~~~~~~~l~---~~~~-----~~vi~iSAktg~GI 317 (329)
T TIGR02729 282 KIDLLDE----EELAELLKELK---KALG-----KPVFPISALTGEGL 317 (329)
T ss_pred CccCCCh----HHHHHHHHHHH---HHcC-----CcEEEEEccCCcCH
Confidence 9999762 22233333322 2222 46899999999999
No 211
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=2.1e-15 Score=139.68 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=93.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|..|+|||||+.+++... .. .. .....|.+............
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~--f~-------------------------~~--~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FE-------------------------KK--YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC--CC-------------------------Cc--cCCccceeEEEEEEEECCeE
Confidence 557899999999999999999986321 00 00 00011222211111122234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccCCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D~~~~~~ 162 (459)
..+.||||||+++|...+...++.+|++|+|+|.++.. .+. ....++..++ ..++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 68999999999999887777889999999999998752 121 1222222222 24678 889999999964211
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. + ++ .+.+. ..++++++||++|.|+
T Consensus 135 ~~---~----~~-~~~~~-----~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 135 KA---K----QV-TFHRK-----KNLQYYEISAKSNYNF 160 (219)
T ss_pred CH---H----HH-HHHHh-----cCCEEEEcCCCCCCCH
Confidence 11 1 11 12222 2357899999999998
No 212
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=8e-16 Score=137.17 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=90.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEE-eeeeEEee--CC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID-IALWKFET--SK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~--~~ 84 (459)
++|+++|++++|||||+.+|+... .. ... -.|+. .-...+.. ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~--~~------------------------~~~-------~~t~~~~~~~~~~~~~~~ 47 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA--FP------------------------EEY-------VPTVFDHYAVSVTVGGKQ 47 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CC------------------------CCC-------CCceeeeeEEEEEECCEE
Confidence 479999999999999999997421 00 000 00111 10111222 23
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHH--HcCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAF--TLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~--~~~ip~iivviNK~D~~~~~ 161 (459)
+.+.+|||||+.+|.......+..+|++++|+|..+.. .+. ...+ .+..++ ..++| +++++||+|+.+..
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~ 120 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDP 120 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcCh
Confidence 56789999999999877777788999999999998652 121 1111 122222 34678 88889999986521
Q ss_pred CcHHHH------HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARF------EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~------~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...... .-..++...+.+.++. .+++++||++|.|+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi 162 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGL 162 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCH
Confidence 100000 0001223333444443 36899999999999
No 213
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=2.7e-15 Score=152.01 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=94.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
...|+++|.+|||||||+++|+.....+. + ..+.|+......++..+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIa-------------------------d------ypfTTl~P~lGvv~~~~~~ 207 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIA-------------------------D------YPFTTLVPNLGVVQAGDTR 207 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcccc-------------------------c------cCcccccceEEEEEECCeE
Confidence 45799999999999999999974321110 1 1255666666777778889
Q ss_pred EEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCce-eccccCCCchHHHHH-HH----------HHcCCce
Q psy13961 87 VTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEF-EAGISKNGQTREHAL-LA----------FTLGVKQ 147 (459)
Q Consensus 87 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~-~~~~~~~~qt~e~~~-~~----------~~~~ip~ 147 (459)
++|+||||..+ .....++.+..+|++|+|||++.... ...+.......+.+. .. ...+.|
T Consensus 208 f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP- 286 (500)
T PRK12296 208 FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP- 286 (500)
T ss_pred EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-
Confidence 99999999642 12234556778999999999974210 000100001111121 11 224678
Q ss_pred EEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 148 LIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 148 iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|||+||+|+++. . +..+.+...++..+ ++++++||++++|+
T Consensus 287 ~IVVlNKiDL~da----~---el~e~l~~~l~~~g-----~~Vf~ISA~tgeGL 328 (500)
T PRK12296 287 RLVVLNKIDVPDA----R---ELAEFVRPELEARG-----WPVFEVSAASREGL 328 (500)
T ss_pred EEEEEECccchhh----H---HHHHHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 7888999999752 1 12222333333323 46999999999999
No 214
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=3.4e-15 Score=131.39 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|.+|+|||||+++|+...-. .+..+.. +.... ....+......+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--------------------------~~~~~~~---~~~~~-~~~~~~~~~~~~ 50 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--------------------------EDYEPTK---ADSYR-KKVVLDGEDVQL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--------------------------cccCCcc---hhhEE-EEEEECCEEEEE
Confidence 37999999999999999999743210 0000000 00000 011122234678
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHH-HH---HcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL-AF---TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~-~~---~~~ip~iivviNK~D~~~~~~~ 163 (459)
.++||||+.+|.......++.+|++++|+|.+... .+. ...+.+.. .+ ..++| +++|+||+|+....
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~-- 121 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR-- 121 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc--
Confidence 99999999999988888899999999999987541 111 12222222 22 25788 89999999997510
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+.++ .+++++||++|+|+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 150 (164)
T cd04139 122 QVSS----EEAANLARQWG-----VPYVETSAKTRQNV 150 (164)
T ss_pred ccCH----HHHHHHHHHhC-----CeEEEeeCCCCCCH
Confidence 0111 11222222223 46899999999999
No 215
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.64 E-value=5.9e-15 Score=133.84 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=92.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee---EEee
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW---KFET 82 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~---~~~~ 82 (459)
...+|+++|..++|||||+.+++... .. +. .-.|+...+. .++.
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~--f~-------------------------~~------~~~t~~~~~~~~~~~~~ 48 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNA--FP-------------------------KE------YIPTVFDNYSAQTAVDG 48 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCC--CC-------------------------cC------CCCceEeeeEEEEEECC
Confidence 45799999999999999999997421 00 00 0112221111 1222
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHH--HcCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAF--TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~--~~~ip~iivviNK~D~~~ 159 (459)
....+.||||||+++|.......++.+|++|+|+|.++.. .|+ .... ++..+. ..++| +++|.||.|+.+
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 121 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhc
Confidence 3467899999999999988878889999999999998652 221 1211 112122 23678 899999999965
Q ss_pred CCCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ...+.+ .++...+.+..+ .++++++||++|+|+
T Consensus 122 ~~---~~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v 165 (191)
T cd01875 122 DA---DTLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGV 165 (191)
T ss_pred Ch---hhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCH
Confidence 21 111111 112222333222 247999999999999
No 216
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=2.6e-15 Score=132.38 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-eCCEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TSKFY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~ 86 (459)
++|+++|.+++|||||+++|+........ +. ....|.........+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~------------------------~~---~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK------------------------NY---LMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc------------------------cC---CCceEEEEEEEEEEeCCCCEEE
Confidence 47999999999999999999632100000 00 0001111111112222 23478
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCCCcH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.+|||||++.|...+...+..+|++++|+|.++... +. .....+..+.. .++| +++|+||+|+.+...
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-- 124 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---FE---NCSRWVNKVRTASKHMP-GVLVGNKMDLADKAE-- 124 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccC--
Confidence 9999999999998888888899999999999976421 11 12222333332 3577 888899999965211
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... ....+.... ..+++++||.+|.|+
T Consensus 125 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gi 152 (164)
T cd04101 125 VTDA----QAQAFAQAN-----QLKFFKTSALRGVGY 152 (164)
T ss_pred CCHH----HHHHHHHHc-----CCeEEEEeCCCCCCh
Confidence 0101 111111212 246899999999998
No 217
>KOG0094|consensus
Probab=99.64 E-value=7.9e-15 Score=126.67 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=112.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee--EEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW--KFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~ 81 (459)
..+..+++++|..++|||+|+.+++++. . | +...-||.+.+. .+.
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~--f--------------------------d-----~~YqATIGiDFlskt~~ 65 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDK--F--------------------------D-----NTYQATIGIDFLSKTMY 65 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhh--h--------------------------c-----ccccceeeeEEEEEEEE
Confidence 3445789999999999999999998742 1 1 112345544443 333
Q ss_pred --eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-CC--ceEEEEEEccC
Q psy13961 82 --TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-GV--KQLIVGVNKMD 156 (459)
Q Consensus 82 --~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-~i--p~iivviNK~D 156 (459)
.....+.||||+|+++|.....++++.+.++|+|.|.++. ..|+ ++..++.-++.. |- ..+++|.||.|
T Consensus 66 l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~---~Sfe---~t~kWi~dv~~e~gs~~viI~LVGnKtD 139 (221)
T KOG0094|consen 66 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR---NSFE---NTSKWIEDVRRERGSDDVIIFLVGNKTD 139 (221)
T ss_pred EcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc---chHH---HHHHHHHHHHhccCCCceEEEEEccccc
Confidence 3446889999999999999999999999999999999865 2232 666666655543 32 33667789999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
|.++ ..+ ..++-....+.+ ++.|+.+||+.|.|+ ..|+..|...+
T Consensus 140 L~dk----rqv--s~eEg~~kAkel-----~a~f~etsak~g~NV------------------------k~lFrrIaa~l 184 (221)
T KOG0094|consen 140 LSDK----RQV--SIEEGERKAKEL-----NAEFIETSAKAGENV------------------------KQLFRRIAAAL 184 (221)
T ss_pred ccch----hhh--hHHHHHHHHHHh-----CcEEEEecccCCCCH------------------------HHHHHHHHHhc
Confidence 9872 111 112222233333 346999999999999 77888887777
Q ss_pred CCC
Q psy13961 237 PPS 239 (459)
Q Consensus 237 ~~~ 239 (459)
|..
T Consensus 185 ~~~ 187 (221)
T KOG0094|consen 185 PGM 187 (221)
T ss_pred cCc
Confidence 653
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=3.4e-15 Score=134.83 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=90.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee-EEee---C
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW-KFET---S 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~-~~~~---~ 83 (459)
++|+++|..++|||||+++|+... .. + + ...|+...+. .+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~--~~-------------------------~----~--~~~t~~~~~~~~i~~~~~~ 47 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK--FP-------------------------E----E--YVPTVFENYVTNIQGPNGK 47 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc--CC-------------------------C----C--CCCeeeeeeEEEEEecCCc
Confidence 479999999999999999997421 00 0 0 0112211111 1222 2
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHH--HcCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAF--TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~--~~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|.......+..+|++|+|+|.++.. .+. .... ++.... ..++| +++|.||+|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 120 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhC
Confidence 357899999999999888777888999999999998652 111 1111 222222 23678 8999999999652
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ..+ ....++..++....+. .+++++||++|.|+
T Consensus 121 ~~-~~~-~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 155 (187)
T cd04132 121 KN-LDR-KVTPAQAESVAKKQGA----FAYLECSAKTMENV 155 (187)
T ss_pred cc-ccC-CcCHHHHHHHHHHcCC----cEEEEccCCCCCCH
Confidence 10 000 0011233333333332 26899999999999
No 219
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=2.8e-15 Score=130.47 Aligned_cols=144 Identities=21% Similarity=0.186 Sum_probs=91.0
Q ss_pred EEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-CEEEEEE
Q psy13961 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-KFYVTII 90 (459)
Q Consensus 12 v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~~~li 90 (459)
++|++|||||||+++|+...... .....+.|.......+... ...+.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999997432110 0111233444333333333 6789999
Q ss_pred eCCCccchHh-------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 91 DAPGHRDFIK-------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 91 DtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
||||+.++.. .+...++.+|++++|+|+...... ............+.| +++++||+|+....
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~-------~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADE-------EEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 9999877643 334467889999999999876321 222235556667888 88999999998631
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
......+.. ... .......+++++|+.++.|+
T Consensus 121 --~~~~~~~~~-~~~---~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 121 --EEEELLELR-LLI---LLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred --hHHHHHHHH-Hhh---cccccCCceEEEeeeccCCH
Confidence 111111100 111 11123568999999999998
No 220
>KOG0084|consensus
Probab=99.63 E-value=2.5e-15 Score=130.36 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=103.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-- 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 84 (459)
..+|+++|..|+|||.|+-|+. .+..++.....+-+|....+++.++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~-------------------------------~~~f~e~~~sTIGVDf~~rt~e~~gk~ 57 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFK-------------------------------DDTFTESYISTIGVDFKIRTVELDGKT 57 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhc-------------------------------cCCcchhhcceeeeEEEEEEeeecceE
Confidence 4689999999999999999984 2333344444455566666666554
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
-++.+|||+|+++|...+.++++.|+++|+|.|.++. .+|+..++....+.....-++| .++|.||.|+.+. ..
T Consensus 58 iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~--~~ 131 (205)
T KOG0084|consen 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ---ESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK--RV 131 (205)
T ss_pred EEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH---HHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--ee
Confidence 4789999999999999999999999999999999875 3443222222222222334678 6777899999752 11
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
-.. ++.+.+...++.. .|.++||+.+.|+.
T Consensus 132 v~~----~~a~~fa~~~~~~----~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 132 VST----EEAQEFADELGIP----IFLETSAKDSTNVE 161 (205)
T ss_pred cCH----HHHHHHHHhcCCc----ceeecccCCccCHH
Confidence 111 2233444444431 29999999999983
No 221
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=2.5e-15 Score=133.49 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=90.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|..|+|||||+++++... .. .+.. ....+.........+....
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~------------------------~~~~--~~T~~~~~~~~~~~~~~~~ 53 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FS------------------------LNAY--SPTIKPRYAVNTVEVYGQE 53 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CC------------------------cccC--CCccCcceEEEEEEECCeE
Confidence 467899999999999999999997321 00 0000 0000111111111122233
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCCCCCc
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~~~~~ 163 (459)
..+.++|++|.+.|.......+..+|++++|+|+++.. .+. ...+.+.... ..++| +++|+||+|+.+..
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~-- 124 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---SFS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQQ-- 124 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---HHH---HHHHHHHHhccCCCCe-EEEEEEcccccccc--
Confidence 57889999999998777777788999999999997641 110 1112222221 13677 89999999996421
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ...+...+.+.+++. .++++||++|.|+
T Consensus 125 -~~---~~~~~~~~~~~~~~~----~~~~~Sa~~~~~v 154 (169)
T cd01892 125 -QR---YEVQPDEFCRKLGLP----PPLHFSSKLGDSS 154 (169)
T ss_pred -cc---cccCHHHHHHHcCCC----CCEEEEeccCccH
Confidence 10 011122233334431 3589999999998
No 222
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.63 E-value=2.7e-15 Score=132.17 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=89.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--CEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--KFY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~ 86 (459)
+|+++|+.++|||||+.+++.. ... .+....+..+.....++.. ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 50 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFH-----------------------------SSHISTIGVDFKMKTIEVDGIKVR 50 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCceeeEEEEEEEEECCEEEE
Confidence 7999999999999999999632 100 0000111222222233333 357
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~~ 163 (459)
+.+|||||+++|...+...+..+|++++|+|.++.. .+. .....+..+.. .++| ++++.||+|+.+...
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---sf~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~- 122 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSER---SYQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQ- 122 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC-
Confidence 889999999999888888889999999999997651 221 22222222222 2466 888899999865210
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. . ++...+.+..+ .+++++||++|.|+
T Consensus 123 -v~-~---~~~~~~~~~~~-----~~~~e~Sa~~~~~v 150 (161)
T cd04117 123 -VG-D---EQGNKLAKEYG-----MDFFETSACTNSNI 150 (161)
T ss_pred -CC-H---HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 00 1 12222223222 46899999999998
No 223
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=2.8e-15 Score=138.67 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=93.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
..++|+++|+.++|||||+++|+...-. . +....+.++.....+..+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~--------------------------~-----~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC--------------------------L-----ESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--------------------------C-----CCCCceeEEEEEEEEEECCE
Confidence 4579999999999999999999632100 0 001112223222333333
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|.......++.+|++|+|+|.++.. .+. ....++..++. .++| +++|.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFD---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 358899999999999888888889999999999998652 111 22233333333 3577 8888999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +.. . +....+.... .++++++||++|.|+
T Consensus 133 ~--~~~-~---~~~~~l~~~~-----~~~~~e~SA~~g~~v 162 (216)
T PLN03110 133 R--SVA-E---EDGQALAEKE-----GLSFLETSALEATNV 162 (216)
T ss_pred c--CCC-H---HHHHHHHHHc-----CCEEEEEeCCCCCCH
Confidence 1 000 1 1112222222 357999999999998
No 224
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=148.82 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+-++++++|.||+|||||+|+|+.+.. +.++| ..|.|.|.-...+..++.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~------------------------AIVTd------I~GTTRDviee~i~i~G~ 265 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR------------------------AIVTD------IAGTTRDVIEEDINLNGI 265 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc------------------------eEecC------CCCCccceEEEEEEECCE
Confidence 457999999999999999999986544 34444 258899999999999999
Q ss_pred EEEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.++||+|.++- +......+..||.+++|+|++.+..+ +....+. +...+.| +++|+||+|+
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~-------~d~~~~~-~~~~~~~-~i~v~NK~DL 336 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDK-------EDLALIE-LLPKKKP-IIVVLNKADL 336 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCch-------hhHHHHH-hcccCCC-EEEEEechhc
Confidence 9999999998643 22344557889999999999875322 3333333 3445677 7888999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..+. . ...+ . . ....+++.+|+++|+|+
T Consensus 337 ~~~~-~-------~~~~-~------~-~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 337 VSKI-E-------LESE-K------L-ANGDAIISISAKTGEGL 364 (454)
T ss_pred cccc-c-------cchh-h------c-cCCCceEEEEecCccCH
Confidence 8731 1 0111 0 0 12336899999999998
No 225
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.63 E-value=2.2e-15 Score=134.28 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=88.8
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEEee--CCEE
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKFET--SKFY 86 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~--~~~~ 86 (459)
|+++|..++|||||+++++... .. .... .|+...+ ..+.. ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~------------------------~~~~-------~~~~~~~~~~~~~~~~~~~ 47 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FP------------------------EDYV-------PTVFENYSADVEVDGKPVE 47 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CC------------------------CCCC-------CcEEeeeeEEEEECCEEEE
Confidence 5899999999999999997421 10 0000 0111111 11222 2346
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHHH--cCCceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAFT--LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~~--~~ip~iivviNK~D~~~~~~~ 163 (459)
+.+|||||+++|.......+..+|++|+|+|.++.. .+. .... ++..+.. .++| +++|.||+|+......
T Consensus 48 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 120 (174)
T smart00174 48 LGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFE---NVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKST 120 (174)
T ss_pred EEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhh
Confidence 899999999999877777788999999999997641 121 1111 2222222 3678 8999999999752110
Q ss_pred HHHHH------HHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFE------EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~------~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+. -..++...+.+..+. .+++++||++|.|+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 160 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGV 160 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCH
Confidence 00000 011223334444432 36899999999999
No 226
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.63 E-value=1.9e-15 Score=132.39 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=90.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--CEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--KFY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~ 86 (459)
+|+++|++++|||||+++|+... ... ...+... +.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~------------------------~~~~~~~------~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVE------------------------EYDPTIE------DSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc------------------------CcCCChh------HeEEEEEEECCEEEE
Confidence 58999999999999999997432 100 0000000 1111122222 467
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-H---cCCceEEEEEEccCCCCCCC
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-T---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~---~~ip~iivviNK~D~~~~~~ 162 (459)
+.++|+||+.+|.......+..+|++++|+|.++... +. +....+..+. . .+.| +++++||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---FE---EIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 8999999999998888888899999999999976521 11 2222222222 2 2577 89999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .+++..+.+..+ .+++++|+.++.|+
T Consensus 121 -~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i 149 (160)
T cd00876 121 -QVS----KEEGKALAKEWG-----CPFIETSAKDNINI 149 (160)
T ss_pred -eec----HHHHHHHHHHcC-----CcEEEeccCCCCCH
Confidence 111 223333444333 46899999999998
No 227
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.63 E-value=2.1e-15 Score=134.41 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=86.7
Q ss_pred EEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-CEEEEEE
Q psy13961 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-KFYVTII 90 (459)
Q Consensus 12 v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~~~li 90 (459)
++|++|+|||||+++|+.....+ ....+.|++.....+... +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------------------------------ANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc-------------------------------cCCCceeecCcceEEEcCCCCeEEEE
Confidence 58999999999999997421100 011244555555556666 7899999
Q ss_pred eCCCccch-------HhHHHHhhcccCEEEEEEECCCCce---eccccCCCchHHHHHHHH----------HcCCceEEE
Q psy13961 91 DAPGHRDF-------IKNMITGTSQADCAVLIVAAGTGEF---EAGISKNGQTREHALLAF----------TLGVKQLIV 150 (459)
Q Consensus 91 DtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~---~~~~~~~~qt~e~~~~~~----------~~~ip~iiv 150 (459)
||||+.+. ...+...+..+|++++|+|+..... ...+. +...+...+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLE---DYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHH---HHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 99998432 2244566778999999999976410 00000 1111222221 14678 888
Q ss_pred EEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 151 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+||+|+... ....+.. ...... ....+++++||.++.|+
T Consensus 126 v~NK~Dl~~~----~~~~~~~--~~~~~~-----~~~~~~~~~Sa~~~~gl 165 (176)
T cd01881 126 VLNKIDLDDA----EELEEEL--VRELAL-----EEGAEVVPISAKTEEGL 165 (176)
T ss_pred EEEchhcCch----hHHHHHH--HHHHhc-----CCCCCEEEEehhhhcCH
Confidence 8999999762 1111111 111111 12356899999999998
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=7.6e-15 Score=129.23 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=99.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..-|+++|..|+|||||+|+|+.+.+. +. . ....|.|..++++.+.. .
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~L-----------------------Ar-t-----SktPGrTq~iNff~~~~---~ 71 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNL-----------------------AR-T-----SKTPGRTQLINFFEVDD---E 71 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcce-----------------------ee-c-----CCCCCccceeEEEEecC---c
Confidence 457999999999999999999753221 11 1 12348888888776543 2
Q ss_pred EEEEeCCCc----------cchHhHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 87 VTIIDAPGH----------RDFIKNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 87 ~~liDtpG~----------~~~~~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
+.|+|.||. +.+-..+..++ ..-.+++++||+..+..+ ..++.+..+...++| ++|++|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~-------~D~em~~~l~~~~i~-~~vv~t 143 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD-------LDREMIEFLLELGIP-VIVVLT 143 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcH-------HHHHHHHHHHHcCCC-eEEEEE
Confidence 889999995 23333344444 246789999999987543 678899999999999 788899
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCc-eeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA-TVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~-~~~~i~iSa~~g~~i 201 (459)
|+|.++. .........++.. +++.+. ...++..|+.++.|+
T Consensus 144 K~DKi~~----~~~~k~l~~v~~~---l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 144 KADKLKK----SERNKQLNKVAEE---LKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred ccccCCh----hHHHHHHHHHHHH---hcCCCCccceEEEEecccccCH
Confidence 9999873 2222223333322 222221 111677788888777
No 229
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=3.1e-15 Score=132.71 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=90.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|.+|+|||||+++|+...- .. . .+.. .+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~---------------------~--~~~t-----~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IE---------------------S--YDPT-----IEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---------------------c--cCCc-----chheE-EEEEEECCEEEEE
Confidence 5899999999999999999963211 00 0 0000 00000 0111122233578
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHcCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~~ip~iivviNK~D~~~~~~~ 163 (459)
.+|||||+++|...+...+..+|++++|+|.++.. .+. ....+.... ...++| ++++.||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~-- 122 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR-- 122 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--
Confidence 89999999999988888889999999999998652 111 111111212 124688 88889999996521
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++...+.+..+ .++++++||++|.|+
T Consensus 123 ~~~----~~~~~~~~~~~~----~~~~~~~SA~~~~~i 152 (168)
T cd04177 123 QVS----REDGVSLSQQWG----NVPFYETSARKRTNV 152 (168)
T ss_pred ccC----HHHHHHHHHHcC----CceEEEeeCCCCCCH
Confidence 111 112222223322 257999999999998
No 230
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.9e-15 Score=137.95 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=91.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee---C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---S 83 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~ 83 (459)
..+|+++|..++|||||+++|+... .. .. ....+..+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~--~~-------------------------~~----~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR--FA-------------------------EV----SDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CC-------------------------CC----CCceeceEEEEEEEEECCCC
Confidence 4789999999999999999997421 00 00 0011112222222322 2
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-c---CCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-L---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~---~ip~iivviNK~D~~~ 159 (459)
...+.+|||||++.|.......++.+|++|+|+|.++.. .+. ...+++..+.. . ..| ++++.||+|+.+
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~---~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~ 123 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFE---HVHDWLEEARSHIQPHRPV-FILVGHKCDLES 123 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCe-EEEEEEcccccc
Confidence 357899999999999888888889999999999998652 121 22222332222 1 344 788889999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +.. .++...+.+..+ ++++++||++|+|+
T Consensus 124 ~~--~v~----~~~~~~~~~~~~-----~~~~e~Sak~g~~v 154 (211)
T cd04111 124 QR--QVT----REEAEKLAKDLG-----MKYIETSARTGDNV 154 (211)
T ss_pred cc--ccC----HHHHHHHHHHhC-----CEEEEEeCCCCCCH
Confidence 21 111 112223333333 47899999999998
No 231
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.4e-15 Score=136.06 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=90.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|..++|||||+++|+... . ... .....|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~--~-------------------------~~~--~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDE--F-------------------------SES--TKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--C-------------------------CCC--CCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999996321 0 000 00011212222222222234577
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCCcH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~~~ 164 (459)
.+|||||+++|...+...+..+|++|+|+|.++.. .+. ....++..... ...| ++++.||+|+.+...
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~-- 122 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SFE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKV-- 122 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCccccc--
Confidence 89999999999888888899999999999998652 121 22222333332 2456 889999999974211
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... +....+....+ ++++++||++|.|+
T Consensus 123 v~~----~~~~~~~~~~~-----~~~~evSa~~~~~i 150 (188)
T cd04125 123 VDS----NIAKSFCDSLN-----IPFFETSAKQSINV 150 (188)
T ss_pred CCH----HHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 011 11122222223 36899999999998
No 232
>PLN03108 Rab family protein; Provisional
Probab=99.62 E-value=4.3e-15 Score=136.77 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=93.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|+.++|||||+++|+...-. .... ..-|.+.......+.....
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~--------------------------~~~~---~ti~~~~~~~~i~~~~~~i 55 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------------------PVHD---LTIGVEFGARMITIDNKPI 55 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--------------------------CCCC---CCccceEEEEEEEECCEEE
Confidence 3589999999999999999999742100 0000 0011111111122222235
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||||+++|...+...++.+|++|+|+|++... .+. ...+++..+.. .++| ++++.||+|+.+..
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s~~---~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~- 127 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLASWLEDARQHANANMT-IMLIGNKCDLAHRR- 127 (210)
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECccCcccc-
Confidence 6889999999999888888889999999999998642 111 12222222222 2567 88999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
... .++..++.+..+ ++++++||+++.|+.
T Consensus 128 -~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 128 -AVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVE 157 (210)
T ss_pred -CCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHH
Confidence 011 122333344333 469999999999983
No 233
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.62 E-value=4.3e-15 Score=134.54 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=89.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEeeCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFETSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~~~ 84 (459)
++|+++|..++|||||+.+|+... .. +. ...|+...+ ..++...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~-------------------------~~------~~~t~~~~~~~~i~~~~~~ 47 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FP-------------------------QV------YEPTVFENYVHDIFVDGLH 47 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------Cc------cCCcceeeeEEEEEECCEE
Confidence 479999999999999999997421 00 00 001111111 1122223
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|.......+..+|++|+|+|.++.. .+. ... .++..+.. .+.| +++|.||+|+.+..
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~---~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~ 120 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLE---NVESKWLGEIREHCPGVK-LVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccCh
Confidence 67899999999998776666778999999999998652 221 111 12333332 3677 89999999997521
Q ss_pred CcHHHHHH------HHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEE------IKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
........ ..++...+.+..+ .++++++||++|.|+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v 162 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGV 162 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCH
Confidence 00000000 0111222222222 257899999999999
No 234
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=5.7e-15 Score=147.91 Aligned_cols=144 Identities=23% Similarity=0.230 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-CEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-KFY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~ 86 (459)
..|+++|.+|||||||+++|+.....+. + ..+.|....+..+.+. +..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------~------ypfTTl~PnlG~v~~~~~~~ 207 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------N------YHFTTLVPNLGVVETDDGRS 207 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------c------CCcceeceEEEEEEEeCCce
Confidence 3799999999999999999974322111 0 1244566665556655 678
Q ss_pred EEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEc
Q psy13961 87 VTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNK 154 (459)
Q Consensus 87 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK 154 (459)
++|+|+||..+ .....++.+..+|++|+|||++.......+ .+.......+.. .+.| ++||+||
T Consensus 208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IVV~NK 283 (424)
T PRK12297 208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIVVANK 283 (424)
T ss_pred EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEEEEeC
Confidence 99999999743 233455667789999999999642100000 011222222222 4678 7888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+... ++.++ + +.+.++ .+++++||++++|+
T Consensus 284 ~DL~~~---~e~l~----~---l~~~l~-----~~i~~iSA~tgeGI 315 (424)
T PRK12297 284 MDLPEA---EENLE----E---FKEKLG-----PKVFPISALTGQGL 315 (424)
T ss_pred CCCcCC---HHHHH----H---HHHHhC-----CcEEEEeCCCCCCH
Confidence 998531 12222 2 222222 36899999999999
No 235
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.61 E-value=5.9e-15 Score=116.52 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=76.2
Q ss_pred cceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEE
Q psy13961 337 TQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMC 411 (459)
Q Consensus 337 ~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~ 411 (459)
+..|+|++.+|++ +.+|++||++++|+++.++.|++..+. ++++|++||.+.|+|++++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 6899999999997 579999999999999999999998874 4688999999999999999999
Q ss_pred eeecCCCCCcceEEEEECCceEEEEEE
Q psy13961 412 VESFSEFPPLGRFAVRDMRQTVAVGVI 438 (459)
Q Consensus 412 ~~~~~~~~~~grfilrd~~~tva~G~V 438 (459)
+++ +|||+||++++|+|+|+|
T Consensus 70 ~~~------~~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEK------GLRFAIREGGRTVGAGVI 90 (90)
T ss_pred Eec------CCEEEEecCCcEEEEEEC
Confidence 887 479999999999999986
No 236
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.61 E-value=5e-15 Score=132.19 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEeeCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFETSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~~~ 84 (459)
++|+++|+.++|||+|+.+++... | .+ + .-.|+...+ ..++...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~----------------------f-----~~----~--~~~Ti~~~~~~~~~~~~~~ 48 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK----------------------F-----PT----D--YIPTVFDNFSANVSVDGNT 48 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC----------------------C-----CC----C--CCCcceeeeEEEEEECCEE
Confidence 589999999999999999997421 0 00 0 011221111 1122234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||+|+++|...+...++.+|++|||+|.++.. .|. .. ..++..++. .++| +++|.||+|+.+..
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA---SYE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccCh
Confidence 68899999999999888888899999999999998652 221 22 223333332 3577 89999999996421
Q ss_pred CcH-H---HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSE-A---RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~-~---~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... . ...-..++..++.+..+. .+++.+||++|.|+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV 161 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNV 161 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCH
Confidence 000 0 000112233334443332 25899999999999
No 237
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=4.1e-15 Score=149.92 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-EE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-FY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~ 86 (459)
..|+++|.+|+|||||+|+|+..... +.+ ..+.|.+.....+.+.+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-------------------------v~~------~~~tTld~~~~~i~l~~~~~ 246 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-------------------------AAD------QLFATLDPTLRRIDVADVGE 246 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-------------------------ecc------CCCCCcCCceEEEEeCCCCe
Confidence 47999999999999999999632111 011 12456666555566554 38
Q ss_pred EEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 87 VTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 87 ~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
+.|+||||+.+. +..+...+..||++|+|+|+++......+ ....+.+..+...++| +++|+||+|+.
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l---~~v~~iL~el~~~~~p-vIiV~NKiDL~ 322 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI---EAVNTVLEEIDAHEIP-TLLVMNKIDML 322 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH---HHHHHHHHHhccCCCC-EEEEEEcccCC
Confidence 899999998432 22345556889999999999875321000 0011223333334678 88899999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
+. + .. .. +. ...++ ..++++||++|+|+ +.|++.|.+.+.
T Consensus 323 ~~-~-~~---~~-~~-----~~~~~----~~~v~ISAktG~GI------------------------deL~e~I~~~l~ 362 (426)
T PRK11058 323 DD-F-EP---RI-DR-----DEENK----PIRVWLSAQTGAGI------------------------PLLFQALTERLS 362 (426)
T ss_pred Cc-h-hH---HH-HH-----HhcCC----CceEEEeCCCCCCH------------------------HHHHHHHHHHhh
Confidence 52 1 11 11 10 01122 12588999999999 788888876653
No 238
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=5.4e-15 Score=132.62 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=88.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--CCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET--SKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~ 85 (459)
++|+++|++|+|||||+++|+... ... ...+ .+.......+.. .++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~~~-------------------------~~~~------t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-FVE-------------------------SYYP------TIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-Ccc-------------------------ccCc------chhhhEEEEEEECCEEE
Confidence 689999999999999999997421 000 0000 000000111222 235
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
.+.++||||+.+|.......+..+|++++|+|.++... +. ...+.+. ++.. .+.| +++|+||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 78899999999998888888889999999999986521 11 1122222 2222 3568 88999999986421
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... +++..+.+.++ .+++++||+++.|+
T Consensus 123 --~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv 151 (180)
T cd04137 123 --QVST----EEGKELAESWG-----AAFLESSARENENV 151 (180)
T ss_pred --ccCH----HHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 0111 11222222222 46899999999998
No 239
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.60 E-value=3.1e-15 Score=132.25 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=85.3
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|++++|||||+.+++... .. .+..+... +.......++.....+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~------------------------~~~~~t~~----~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI------------------------GEYDPNLE----SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc------------------------cccCCChH----HhceEEEEECCEEEEEE
Confidence 58999999999999999997421 00 00000000 00011111222334688
Q ss_pred EEeCCCccch-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEccCCCCCCC
Q psy13961 89 IIDAPGHRDF-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 89 liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~D~~~~~~ 162 (459)
||||||+.++ ...+...++.+|++|+|+|+++.. ++. .....+..+.. .++| +++|.||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~- 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYR- 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC-
Confidence 9999999863 445667788999999999998752 121 12222222222 3678 88899999986410
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCC-cc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGD-NM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~-~i 201 (459)
... .++...+.+..+ .+++++||++|. |+
T Consensus 123 -~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v 152 (165)
T cd04146 123 -QVS----TEEGEKLASELG-----CLFFEVSAAEDYDGV 152 (165)
T ss_pred -ccC----HHHHHHHHHHcC-----CEEEEeCCCCCchhH
Confidence 000 122222333333 468999999994 78
No 240
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.60 E-value=5.8e-15 Score=131.64 Aligned_cols=152 Identities=12% Similarity=0.089 Sum_probs=90.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee--eeEEeeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKFETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~ 85 (459)
++++++|+.++|||||+.+++... .. .... ....+.- ...++....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~------------------------~~~~------~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YP------------------------TEYV------PTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CC------------------------CCCC------CceeeeeeEEEEECCEEE
Confidence 479999999999999999986421 00 0000 0011111 112222346
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCCCc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~~~ 163 (459)
.+.||||||+.+|.......++.+|++|+|+|.++.. .+.. .....+..+.. .++| ++++.||+|+....-.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~---sf~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 122 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS---SFQN--ISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNV 122 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHH---HHHH--HHHHHHHHHHhhCCCCC-EEEEeeChhhccChhH
Confidence 7889999999999887777788999999999998652 1210 11122323332 3577 8999999999642100
Q ss_pred HH------HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EA------RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~------~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ...-..++...+.+..+. .+++++||++|.|+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v 162 (173)
T cd04130 123 LIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNL 162 (173)
T ss_pred HHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCH
Confidence 00 000001222333333332 36999999999998
No 241
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.1e-14 Score=130.65 Aligned_cols=153 Identities=15% Similarity=0.209 Sum_probs=95.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEE
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKF 80 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~ 80 (459)
++...+|+++|..++|||||+.+++... | .. +...|+...+ ..+
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~----------------------f-----~~------~~~pT~~~~~~~~~~~ 48 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDC----------------------F-----PE------NYVPTVFENYTASFEI 48 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCC----------------------C-----CC------ccCCceeeeeEEEEEE
Confidence 3567899999999999999999997421 0 00 0011221111 112
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDS 157 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~ 157 (459)
......+.||||+|+++|.......++.+|++|||+|.++.. .|. .. ..++..++. -+.| +++|.||+|+
T Consensus 49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL 121 (182)
T cd04172 49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDL 121 (182)
T ss_pred CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHHCCCCC-EEEEeEChhh
Confidence 233467899999999999888778889999999999998652 221 11 122222222 2567 8899999998
Q ss_pred CCCCCcHH------HH-HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc-c
Q psy13961 158 TEPPYSEA------RF-EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN-M 201 (459)
Q Consensus 158 ~~~~~~~~------~~-~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~-i 201 (459)
.+. .... +- .-..++..++.+++++ .+|+.+||++|.| +
T Consensus 122 ~~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v 168 (182)
T cd04172 122 RTD-LTTLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSV 168 (182)
T ss_pred hcC-hhhHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCH
Confidence 641 0000 00 0012334444444442 3699999999998 8
No 242
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=9.6e-15 Score=148.07 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=83.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+.....+ +. ...|.|.+.....+..++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------------------vs------~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------------------VS------DIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------cC------CCCCcEEEEEEEEEEECC
Confidence 346799999999999999999997432111 11 124677777777788889
Q ss_pred EEEEEEeCCCccchHh--------HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 85 FYVTIIDAPGHRDFIK--------NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
..+.+|||||+.++.. .....+..+|++++|+|++.+... +.. .+..+...+.| +++|+||+|
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~-------~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTK-------DDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCCh-------hHH-HHHHHhhCCCC-EEEEEECcc
Confidence 9999999999865432 234567889999999999865211 222 34444445788 889999999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
+.+
T Consensus 322 l~~ 324 (442)
T TIGR00450 322 LKI 324 (442)
T ss_pred CCC
Confidence 975
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.60 E-value=5.8e-14 Score=130.40 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=102.4
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcC-ceEEeeeeEEee
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG-ITIDIALWKFET 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g-~Ti~~~~~~~~~ 82 (459)
..+...|+++|++|+|||||++.|+....... .....| +++ ...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-----------------------------~~~~~g~i~i------~~~ 80 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-----------------------------ISDIKGPITV------VTG 80 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-----------------------------cccccccEEE------Eec
Confidence 35677899999999999999999974321100 001122 121 223
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
.+..++++||||+. ..++..+..+|++++|+|++.+..+ ++.+.+..+...++|.+++|+||+|+.+.
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~-------~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-- 148 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEM-------ETFEFLNILQVHGFPRVMGVLTHLDLFKK-- 148 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCH-------HHHHHHHHHHHcCCCeEEEEEeccccCCc--
Confidence 57789999999864 5667778899999999999876433 67778888888899966668999999752
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...++++.++++..+..--+ ...+++++||++.-.+
T Consensus 149 -~~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 149 -NKTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRY 184 (225)
T ss_pred -HHHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCC
Confidence 24456666677653321111 2358999999987444
No 244
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.59 E-value=1.6e-14 Score=131.52 Aligned_cols=136 Identities=14% Similarity=0.200 Sum_probs=88.2
Q ss_pred EecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee--eEEe--eCCEEEE
Q psy13961 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL--WKFE--TSKFYVT 88 (459)
Q Consensus 13 ~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~--~~~~~~~ 88 (459)
+|..++|||||+.+++.. ... . ....|+...+ ..+. .....+.
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~-----------------------------~--~~~~Tig~~~~~~~~~~~~~~~~l~ 47 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFE-----------------------------K--KYVATLGVEVHPLVFHTNRGPIRFN 47 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCC-----------------------------C--CCCCceeEEEEEEEEEECCEEEEEE
Confidence 599999999999999731 110 0 1122332222 2222 3356899
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCCCcHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
||||||+++|...+..+++.+|++|+|+|++... .+. ....++..+.. .++| +++|.||+|+.......
T Consensus 48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~-- 118 (200)
T smart00176 48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA-- 118 (200)
T ss_pred EEECCCchhhhhhhHHHhcCCCEEEEEEECCChH---HHH---HHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH--
Confidence 9999999999988888899999999999998762 121 22233333333 4678 88999999986421111
Q ss_pred HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+. + .+.+. ..++++++||++|.|+
T Consensus 119 -~~----~-~~~~~-----~~~~~~e~SAk~~~~v 142 (200)
T smart00176 119 -KS----I-TFHRK-----KNLQYYDISAKSNYNF 142 (200)
T ss_pred -HH----H-HHHHH-----cCCEEEEEeCCCCCCH
Confidence 11 1 12222 2357999999999998
No 245
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.59 E-value=1.1e-14 Score=129.92 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=88.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEe---eeeEEeeCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI---ALWKFETSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~---~~~~~~~~~ 84 (459)
.+|+++|+.++|||||+.+|+...- . .. .-.|+.. ....+....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~-------------------------~~------~~~t~~~~~~~~~~~~~~~ 48 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--P-------------------------EV------YVPTVFENYVADIEVDGKQ 48 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--C-------------------------CC------CCCccccceEEEEEECCEE
Confidence 4799999999999999999974210 0 00 0001111 111122233
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH-HHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA-LLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~-~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|.......+..+|++++|+|.+... +++ ...+.+ ..++. .++| +++|.||+|+.+.+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (175)
T cd01870 49 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDE 121 (175)
T ss_pred EEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccCh
Confidence 57899999999998877667788999999999997541 111 121212 22222 3678 89999999987531
Q ss_pred CcHHHHHH------HHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEE------IKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
........ ...+.+.+.+..+ ..+++++||++|.|+
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v 163 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGV 163 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCH
Confidence 11000000 0111222222222 247899999999999
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.3e-15 Score=150.65 Aligned_cols=139 Identities=22% Similarity=0.369 Sum_probs=100.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|+||+|||||+|+|+.....+. +| .|+|++.....+.+.++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg---------------------Nw----------pGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG---------------------NW----------PGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec---------------------CC----------CCeeEEEEEEEEEecCce
Confidence 45699999999999999999974332221 22 399999999999999999
Q ss_pred EEEEeCCCccchHhH------HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHH---HHHHHcCCceEEEEEEcc
Q psy13961 87 VTIIDAPGHRDFIKN------MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHA---LLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 87 ~~liDtpG~~~~~~~------~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~---~~~~~~~ip~iivviNK~ 155 (459)
+.++|+||...+... ....+ ..+|++|-|+||+ +.++++ .++..+|+| +++++|++
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAt------------nLeRnLyltlQLlE~g~p-~ilaLNm~ 118 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDAT------------NLERNLYLTLQLLELGIP-MILALNMI 118 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccc------------hHHHHHHHHHHHHHcCCC-eEEEeccH
Confidence 999999997554221 12222 3589999999997 444444 456678999 89999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|.....- +.-+..++-+.+| +|++|+||.+|.|+
T Consensus 119 D~A~~~G-------i~ID~~~L~~~LG-----vPVv~tvA~~g~G~ 152 (653)
T COG0370 119 DEAKKRG-------IRIDIEKLSKLLG-----VPVVPTVAKRGEGL 152 (653)
T ss_pred hhHHhcC-------CcccHHHHHHHhC-----CCEEEEEeecCCCH
Confidence 9875311 1112222223344 47999999999998
No 247
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=3.2e-14 Score=125.45 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=90.0
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEE
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTI 89 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~l 89 (459)
|+++|+.|+|||||++.|+.... .. +.+...+.|........ . ..+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~--~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LA----------------------------RTSKTPGKTQLINFFNV--N-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-ee----------------------------eecCCCCcceeEEEEEc--c-CeEEE
Confidence 79999999999999999973110 00 00111233333332222 2 28999
Q ss_pred EeCCCccch----------HhHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 90 IDAPGHRDF----------IKNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 90 iDtpG~~~~----------~~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
+||||+... ...+...+ ...+++++++|+.....+ ...+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-------~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTE-------IDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCH-------hHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997542 22222222 356889999999765222 445556677778888 888899999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... .........+...++... ...+++++|++++.++
T Consensus 122 ~~~~----~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 122 KLKK----SELAKALKEIKKELKLFE---IDPPIILFSSLKGQGI 159 (170)
T ss_pred cCCh----HHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCH
Confidence 9753 233334444444443211 2357899999999988
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.58 E-value=1.1e-14 Score=152.86 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=92.9
Q ss_pred ecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEEEeCC
Q psy13961 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAP 93 (459)
Q Consensus 14 G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~liDtp 93 (459)
|.+|+|||||+|+|+..... .....|+|++.....+++++..+.++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-------------------------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-------------------------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-------------------------------ecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 88999999999999632110 01135889888888888888899999999
Q ss_pred CccchHhH-----HHH-h--hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 94 GHRDFIKN-----MIT-G--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 94 G~~~~~~~-----~~~-~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
|+.+|... +.+ . ...+|++++|+|+++. + +..+....+...++| +++|+||+|+.+...
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--e-------r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~--- 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--E-------RNLYLTLQLLELGIP-MILALNLVDEAEKKG--- 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--h-------hhHHHHHHHHhcCCC-EEEEEehhHHHHhCC---
Confidence 99887432 111 1 2468999999999753 1 333444455567899 889999999864211
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. .+.+.+.+.+| ++++++||++|+|+
T Consensus 117 -i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 117 -IR---IDEEKLEERLG-----VPVVPTSATEGRGI 143 (591)
T ss_pred -Ch---hhHHHHHHHcC-----CCEEEEECCCCCCH
Confidence 11 11222223333 47999999999999
No 249
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=2.1e-14 Score=128.66 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=91.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEeeCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFETSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~~~ 84 (459)
.+|+++|..++|||||+.+++... .. .+ .-.|+...+ ..+....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~--f~------------------------~~-------~~~t~~~~~~~~~~~~~~~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC--YP------------------------ET-------YVPTVFENYTASFEIDEQR 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CC------------------------CC-------cCCceEEEEEEEEEECCEE
Confidence 589999999999999999997421 00 00 011221111 1122234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|.......++.+|++|+|+|.++.. .|. .. ..++..++. .+.| +++|.||+|+.+.
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~---Sf~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~- 120 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE---TLD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD- 120 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh---hHH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC-
Confidence 67899999999999877777889999999999998652 221 21 223333332 3567 8889999998641
Q ss_pred CcHH-HH------HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc-c
Q psy13961 162 YSEA-RF------EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN-M 201 (459)
Q Consensus 162 ~~~~-~~------~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~-i 201 (459)
.... .+ .-..++..++.+++++ .+++.+||++|+| +
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v 164 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSV 164 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCH
Confidence 0000 00 0011233344444442 3689999999985 8
No 250
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.56 E-value=2.7e-14 Score=132.42 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=85.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|..|+|||||+++|+... .. ....+ ...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~--~~------------------------~~~~~--~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGE--YD------------------------DHAYD--ASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC--cC------------------------ccCcC--CCccccceEEEEEECCEEEEE
Confidence 379999999999999999996321 00 00000 000001111112223345689
Q ss_pred EEEeCCCccchHhHHHHhhc-ccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCC
Q psy13961 88 TIIDAPGHRDFIKNMITGTS-QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~-~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~ 162 (459)
.||||||++.+... ..+. .+|++++|+|+++.. .+. ...+.+..+.. .++| +|+|.||+|+.+..
T Consensus 53 ~i~Dt~G~~~~~~~--~~~~~~ad~iilV~d~td~~---S~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~- 122 (221)
T cd04148 53 VVIDHWEQEMWTED--SCMQYQGDAFVVVYSVTDRS---SFE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR- 122 (221)
T ss_pred EEEeCCCcchHHHh--HHhhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc-
Confidence 99999999854333 2344 899999999998752 121 22333333333 3578 89999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .++...+....+ ++++++||++|.|+
T Consensus 123 -~v~----~~~~~~~a~~~~-----~~~~e~SA~~~~gv 151 (221)
T cd04148 123 -EVS----VQEGRACAVVFD-----CKFIETSAGLQHNV 151 (221)
T ss_pred -eec----HHHHHHHHHHcC-----CeEEEecCCCCCCH
Confidence 111 111222222222 46899999999999
No 251
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=4.9e-14 Score=130.84 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEee
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFET 82 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~ 82 (459)
...+|+++|..++|||+|+.+|+... .. +. ...|+...+ ..+..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~--F~-------------------------~~------y~pTi~~~~~~~i~~~~ 58 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC--YP-------------------------ET------YVPTVFENYTAGLETEE 58 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC--CC-------------------------CC------cCCceeeeeEEEEEECC
Confidence 35799999999999999999996321 00 00 001111111 11222
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~~~ 159 (459)
....+.||||||+++|......+++.+|++|||+|.++.. .|. .. ..++..+.. -+.| +|+|.||+|+.+
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~ 131 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVD---SALKKWKAEIMDYCPSTR-ILLIGCKTDLRT 131 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEECccccc
Confidence 3467899999999999888888889999999999998652 121 11 122233332 3567 889999999863
Q ss_pred CCCcHH-------HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCC-cc
Q psy13961 160 PPYSEA-------RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGD-NM 201 (459)
Q Consensus 160 ~~~~~~-------~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~-~i 201 (459)
. .... ...-..++..++.+.+++ ..|+.+||++|+ |+
T Consensus 132 ~-~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V 176 (232)
T cd04174 132 D-LSTLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSI 176 (232)
T ss_pred c-cchhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCH
Confidence 1 0000 000012244455555543 258999999997 68
No 252
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=1e-13 Score=127.96 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=91.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEEe--eCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKFE--TSK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~--~~~ 84 (459)
.+|+++|..++|||+|+.+|+... .. .+ .-.|+...+ ..+. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~------------------------~~-------y~pTi~~~~~~~~~~~~~~ 48 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YP------------------------GS-------YVPTVFENYTASFEIDKRR 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC------------------------Cc-------cCCccccceEEEEEECCEE
Confidence 589999999999999999997421 00 00 001111111 1222 234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHH--HcCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAF--TLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~--~~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||+|++.|.......+..+|++|+|+|.++.. .+. .....|. ... ..++| +|+|.||+|+.+..
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~ 121 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDL 121 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccch
Confidence 67889999999999888888889999999999998752 121 1212221 122 23677 89999999996420
Q ss_pred CcHHHHHH--------H-HHHHHhhhhhcCcCCceeeEeecCCCCCCc-c
Q psy13961 162 YSEARFEE--------I-KKEVSGYIKKIGYNPATVAFVPISGWHGDN-M 201 (459)
Q Consensus 162 ~~~~~~~~--------i-~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~-i 201 (459)
....+ + .++...+.+.+|. ++++.+||++++| +
T Consensus 122 ---~~~~~~~~~~~~pIs~e~g~~~ak~~~~----~~y~E~SAk~~~~~V 164 (222)
T cd04173 122 ---ATLRELSKQRLIPVTHEQGTVLAKQVGA----VSYVECSSRSSERSV 164 (222)
T ss_pred ---hhhhhhhhccCCccCHHHHHHHHHHcCC----CEEEEcCCCcCCcCH
Confidence 11111 1 1223333344432 4799999999885 7
No 253
>KOG0078|consensus
Probab=99.54 E-value=3.9e-14 Score=124.79 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=102.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
...+|+++|..++|||.|+-++.... |... ....+-|+.....++.++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~----------------------f~~~---------~~sTiGIDFk~kti~l~g~ 59 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDS----------------------FNTS---------FISTIGIDFKIKTIELDGK 59 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhcc----------------------CcCC---------ccceEEEEEEEEEEEeCCe
Confidence 35799999999999999999986321 1100 011233444445555544
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||+|+++|...+-++++.|++++||+|.+.. ..|+ ..+.++..... -++| +++|.||+|+...
T Consensus 60 ~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfe---ni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 60 KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFE---NIRNWIKNIDEHASDDVV-KILVGNKCDLEEK 132 (207)
T ss_pred EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHH---HHHHHHHHHHhhCCCCCc-EEEeecccccccc
Confidence 5778999999999999999999999999999999865 2222 22333333332 3678 7888999999751
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+ .--.+.-+++...+|. .|+.+||++|.|+.+
T Consensus 133 -----R-~V~~e~ge~lA~e~G~-----~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 133 -----R-QVSKERGEALAREYGI-----KFFETSAKTNFNIEE 164 (207)
T ss_pred -----c-cccHHHHHHHHHHhCC-----eEEEccccCCCCHHH
Confidence 1 1122344455555564 699999999999954
No 254
>KOG0098|consensus
Probab=99.53 E-value=2.9e-14 Score=122.23 Aligned_cols=150 Identities=20% Similarity=0.181 Sum_probs=103.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
...+++++|..++|||.|+-+++... | ..+.| ..+-++.....+..++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~kr----------------------F--~~~hd-------~TiGvefg~r~~~id~k 53 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKR----------------------F--QPVHD-------LTIGVEFGARMVTIDGK 53 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccC----------------------c--ccccc-------ceeeeeeceeEEEEcCc
Confidence 45689999999999999999996321 0 00011 1223344444444444
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCce--EEEEEEccCCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ--LIVGVNKMDSTEPP 161 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~--iivviNK~D~~~~~ 161 (459)
-++.+|||+||+.|...+-++++.+-++|||.|.+.. +.|. ....+|.-+++..-+. ++++.||+|+...
T Consensus 54 ~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r---~sF~---hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r- 126 (216)
T KOG0098|consen 54 QIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRR---ESFN---HLTSWLEDARQHSNENMVIMLIGNKSDLEAR- 126 (216)
T ss_pred eEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccch---hhHH---HHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-
Confidence 5789999999999999999999999999999999876 2232 2333445555554333 5666799999752
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+ +--.++-+.+.++.|+ .|..+||++++|+.+
T Consensus 127 ----R-~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEE 158 (216)
T KOG0098|consen 127 ----R-EVSKEEGEAFAREHGL-----IFMETSAKTAENVEE 158 (216)
T ss_pred ----c-cccHHHHHHHHHHcCc-----eeehhhhhhhhhHHH
Confidence 1 3334566677777666 578999999999854
No 255
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=5.8e-14 Score=120.72 Aligned_cols=140 Identities=21% Similarity=0.174 Sum_probs=88.2
Q ss_pred EEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceE-EeeeeEEe--eCCEEEE
Q psy13961 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI-DIALWKFE--TSKFYVT 88 (459)
Q Consensus 12 v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~--~~~~~~~ 88 (459)
++|++++|||||+++|........ ....|. +.....+. .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE--------------------------------EYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc--------------------------------ccccchhheeeEEEEECCEEEEEE
Confidence 589999999999999974322100 011111 11111122 2357899
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-----HHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-----HALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-----~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++|+||+.++.......+..+|++++|+|++.+... .... ........+.| +++++||+|+.....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~- 119 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEERV- 119 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEeccccccccc-
Confidence 999999999988888888999999999999875321 1111 22233446777 899999999976321
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .... ....... ....+++++|+.++.|+
T Consensus 120 -~--~~~~--~~~~~~~----~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 120 -V--SEEE--LAEQLAK----ELGVPYFETSAKTGENV 148 (157)
T ss_pred -h--HHHH--HHHHHHh----hcCCcEEEEecCCCCCh
Confidence 1 1110 0111111 12467999999999988
No 256
>KOG0394|consensus
Probab=99.52 E-value=1.1e-13 Score=118.58 Aligned_cols=152 Identities=18% Similarity=0.278 Sum_probs=98.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee--eEEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL--WKFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~ 81 (459)
++..++|+++|.+|+|||+|++++.+.. + ....-.||...+ ..+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~k----------F-----------------------~~qykaTIgadFltKev~ 52 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKK----------F-----------------------SQQYKATIGADFLTKEVQ 52 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHH----------H-----------------------HHHhccccchhheeeEEE
Confidence 4567899999999999999999997421 0 011122332222 2222
Q ss_pred eC--CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH--HHHHH------cCCceEEEE
Q psy13961 82 TS--KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA--LLAFT------LGVKQLIVG 151 (459)
Q Consensus 82 ~~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~--~~~~~------~~ip~iivv 151 (459)
.+ ...+.||||+|+++|...-...++.||.++||.|.+.. ..|+ ..+.| .++.. -..| +||+
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~---~Sfe----~L~~Wr~EFl~qa~~~~Pe~FP-FVil 124 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP---KSFE----NLENWRKEFLIQASPQDPETFP-FVIL 124 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh---hhhc----cHHHHHHHHHHhcCCCCCCccc-EEEE
Confidence 22 34678999999999988877778999999999999765 2232 22222 22222 2357 8999
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
.||+|+.+. +.+ ....+..+.+.+.- .++|++.+||+.+.|+.++
T Consensus 125 GNKiD~~~~---~~r-~VS~~~Aq~WC~s~----gnipyfEtSAK~~~NV~~A 169 (210)
T KOG0394|consen 125 GNKIDVDGG---KSR-QVSEKKAQTWCKSK----GNIPYFETSAKEATNVDEA 169 (210)
T ss_pred cccccCCCC---ccc-eeeHHHHHHHHHhc----CCceeEEecccccccHHHH
Confidence 999999651 111 11223334444432 4689999999999999543
No 257
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.52 E-value=1.7e-13 Score=125.28 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=74.5
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe----eCC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE----TSK 84 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~----~~~ 84 (459)
+|+++|+++||||||+.+|....- . .. -.++......+. ..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~--~-------------------------~t-------~~s~~~~~~~~~~~~~~~~ 47 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--R-------------------------ST-------VTSIEPNVATFILNSEGKG 47 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------Cc-------cCcEeecceEEEeecCCCC
Confidence 689999999999999999974210 0 00 001111111111 235
Q ss_pred EEEEEEeCCCccchHhHHHHhhccc-CEEEEEEECCCCceeccccCCCchHHHHHHH----HH--cCCceEEEEEEccCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQA-DCAVLIVAAGTGEFEAGISKNGQTREHALLA----FT--LGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~a-D~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~--~~ip~iivviNK~D~ 157 (459)
..+.|||||||.+|...+...++.+ +++|+|+|+.... ..+ ..+.+++..+ .. .++| +++++||+|+
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl 121 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KNL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDL 121 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hHH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhh
Confidence 7899999999999998888888888 9999999998641 001 1233333321 11 3788 8999999999
Q ss_pred CCC
Q psy13961 158 TEP 160 (459)
Q Consensus 158 ~~~ 160 (459)
...
T Consensus 122 ~~a 124 (203)
T cd04105 122 FTA 124 (203)
T ss_pred ccc
Confidence 763
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.52 E-value=9.5e-14 Score=115.24 Aligned_cols=107 Identities=26% Similarity=0.259 Sum_probs=73.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|.+|+|||||+++|+.... +... ...+.|....+..+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~------------------------~~~~------~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL------------------------AKVS------NIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS------------------------SEES------SSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccc------------------------cccc------ccccceeeeeeeeeeeceeeEE
Confidence 689999999999999999974211 0011 1124455555556677888999
Q ss_pred EEeCCCccc---------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 89 IIDAPGHRD---------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 89 liDtpG~~~---------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
|+||||..+ ........+..+|++++|+|++....+ +..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~-------~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITE-------DDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHH-------HHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCH-------HHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999743 233455666889999999998763111 3344445554 6677 8999998
No 259
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=1.8e-13 Score=126.47 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee--eeEE
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKF 80 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~ 80 (459)
+....++|+++|+.|+|||||+++++... ... + ...|+... ...+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~--~~~-----------------------------~--~~~t~~~~~~~~~~ 51 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGE--FEK-----------------------------K--YIPTLGVEVHPLKF 51 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCC--CCC-----------------------------C--CCCccceEEEEEEE
Confidence 35667899999999999999998876321 100 0 01122221 1222
Q ss_pred --eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccC
Q psy13961 81 --ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMD 156 (459)
Q Consensus 81 --~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D 156 (459)
......+.+|||||+++|.......+..+|++++|+|.++... +. .....+..+. ..++| ++++.||+|
T Consensus 52 ~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~D 124 (215)
T PTZ00132 52 YTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVD 124 (215)
T ss_pred EECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcc
Confidence 2345788999999999997777777788999999999986521 11 1112222221 13567 788899999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
+.+..... + ...+.+.. ...++++||++|.|+.
T Consensus 125 l~~~~~~~----~----~~~~~~~~-----~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 125 VKDRQVKA----R----QITFHRKK-----NLQYYDISAKSNYNFE 157 (215)
T ss_pred CccccCCH----H----HHHHHHHc-----CCEEEEEeCCCCCCHH
Confidence 86421111 1 11222222 2468999999999983
No 260
>KOG1423|consensus
Probab=99.50 E-value=3.9e-13 Score=124.15 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=77.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....++|+++|.+|+|||||.|.++...-... .+ +--.|......-+...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~v------------------------S~------K~~TTr~~ilgi~ts~ 118 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV------------------------SR------KVHTTRHRILGIITSG 118 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccc------------------------cc------cccceeeeeeEEEecC
Confidence 34578999999999999999999985322111 11 1122333444456677
Q ss_pred CEEEEEEeCCCcc------c------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcCCceEEE
Q psy13961 84 KFYVTIIDAPGHR------D------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLGVKQLIV 150 (459)
Q Consensus 84 ~~~~~liDtpG~~------~------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~ip~iiv 150 (459)
..++.|+||||.. . +..+...++..||++++|+|++....+ ..-..+..+ ....+| -|+
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~-------l~p~vl~~l~~ys~ip-s~l 190 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTP-------LHPRVLHMLEEYSKIP-SIL 190 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCc-------cChHHHHHHHHHhcCC-cee
Confidence 8899999999942 1 233445667889999999999853111 111222222 335788 477
Q ss_pred EEEccCCCC
Q psy13961 151 GVNKMDSTE 159 (459)
Q Consensus 151 viNK~D~~~ 159 (459)
|+||+|...
T Consensus 191 vmnkid~~k 199 (379)
T KOG1423|consen 191 VMNKIDKLK 199 (379)
T ss_pred eccchhcch
Confidence 799999875
No 261
>KOG0075|consensus
Probab=99.50 E-value=9.9e-14 Score=114.07 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+....+.++|--+||||||++..... .-. +.-+.|+..+.+.++...
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g--~~~-------------------------------edmiptvGfnmrk~tkgn 64 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARG--QYL-------------------------------EDMIPTVGFNMRKVTKGN 64 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeec--cch-------------------------------hhhcccccceeEEeccCc
Confidence 45678999999999999999887421 100 011345566667777788
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH----HHHHHcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA----LLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~----~~~~~~~ip~iivviNK~D~~~~ 160 (459)
..+.++|.||+..|..++.++.+.+|+++++|||.+.. .++ -.++.+ ......|+| ++|..||.|+.++
T Consensus 65 vtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~---k~~---~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 65 VTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD---KLE---ASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGA 137 (186)
T ss_pred eEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc---cch---hhHHHHHHHhcchhhcCCc-EEEecccccCccc
Confidence 89999999999999999999999999999999998742 121 233322 222346889 8888999999873
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.++ ..+.+++ ....+...++-.+.+|++...|+
T Consensus 138 -L~~---~~li~rm----gL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 138 -LSK---IALIERM----GLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred -ccH---HHHHHHh----CccccccceEEEEEEEEcCCccH
Confidence 111 1222221 11223345678899999999998
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.49 E-value=3.1e-13 Score=137.69 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=72.8
Q ss_pred CEEEEEEeCCCccc-----hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC--CceEEEEEEccC
Q psy13961 84 KFYVTIIDAPGHRD-----FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG--VKQLIVGVNKMD 156 (459)
Q Consensus 84 ~~~~~liDtpG~~~-----~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~--ip~iivviNK~D 156 (459)
..+++|+||||... +.+.|...+..+|++++|+|+..+..+ ..++.+..++..+ .| +++|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~-------~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSI-------SDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCCh-------hHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 36899999999753 345677788999999999999865322 4555666666666 47 889999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+. +. ...+.+.+.+...+...++ ....++|+||++|.|+
T Consensus 301 l~dr-ee-ddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~ni 341 (741)
T PRK09866 301 QQDR-NS-DDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLA 341 (741)
T ss_pred CCCc-cc-chHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCH
Confidence 9742 11 1234444444434333233 2346899999999998
No 263
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.49 E-value=1.7e-13 Score=120.59 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=92.3
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|+.++|||||+.+|.... .. ... ....|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~------------------------~~~---~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FP------------------------ENY---IPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TT------------------------SSS---ETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cc------------------------ccc---ccccccccccccccccccccccc
Confidence 68999999999999999996421 00 000 00112222222222223446799
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-c--CCceEEEEEEccCCCCCCCcHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-L--GVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~--~ip~iivviNK~D~~~~~~~~~ 165 (459)
|||++|+++|.......+..+|++|+|.|.++. ..+. ....++..+.. . +.| ++++.||.|+.+. .+.
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~---~S~~---~~~~~~~~i~~~~~~~~~-iivvg~K~D~~~~--~~v 122 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE---ESFE---NLKKWLEEIQKYKPEDIP-IIVVGNKSDLSDE--REV 122 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBH---HHHH---THHHHHHHHHHHSTTTSE-EEEEEETTTGGGG--SSS
T ss_pred ccccccccccccccccccccccccccccccccc---cccc---cccccccccccccccccc-ceeeecccccccc--ccc
Confidence 999999999987777778899999999999865 2232 22333333332 2 355 8999999998751 111
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ++.+.+.+.++ .+++.+|++++.|+
T Consensus 123 ~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 123 SV----EEAQEFAKELG-----VPYFEVSAKNGENV 149 (162)
T ss_dssp CH----HHHHHHHHHTT-----SEEEEEBTTTTTTH
T ss_pred hh----hHHHHHHHHhC-----CEEEEEECCCCCCH
Confidence 12 23333444433 47999999999998
No 264
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.49 E-value=1.2e-13 Score=124.93 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=87.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee-eeEEee--CC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA-LWKFET--SK 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~--~~ 84 (459)
.+|+++|+.++|||||+++|.... ... + ...|+... ...+.. ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~-----------------------------~--~~~t~~~~~~~~~~~~~~~ 48 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPE-----------------------------E--YHPTVFENYVTDCRVDGKP 48 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc-----------------------------c--cCCcccceEEEEEEECCEE
Confidence 589999999999999999996321 100 0 00011100 011222 23
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
..+.++||||+++|.......++.+|+++++.|.+... .+. ... .++..++. ..+| +++|.||+|+.+..
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~ 121 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDA 121 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCc
Confidence 46789999999888655545678899999999997542 121 111 12333322 2577 89999999986421
Q ss_pred CcH-----HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSE-----ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~-----~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .++.. .++...+.+.++. .+++++||++|.|+
T Consensus 122 ~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v 161 (187)
T cd04129 122 VAKEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGV 161 (187)
T ss_pred ccccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCH
Confidence 110 01110 1122233343332 36899999999999
No 265
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.49 E-value=3.8e-13 Score=118.03 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=82.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--E
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--F 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~ 85 (459)
++|+++|+.++|||||+.+++... .. ....+. .+. -...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~--f~------------------------~~~~~~---~~~----~~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS--YV------------------------QLESPE---GGR----FKKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC--CC------------------------CCCCCC---ccc----eEEEEEECCEEE
Confidence 479999999999999999986421 00 000000 010 011122333 5
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~ 161 (459)
.+.+|||+|++++ .....+|++++|+|.++. ..|. ....++..+.. .++| +++|.||+|+....
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~---~sf~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENE---ASFQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCH---HHHH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6899999999763 234679999999999875 2231 22233333332 3467 88999999984210
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
-.+.. .++..++.++. ..++|+++||++|.|+
T Consensus 116 ~~~v~----~~~~~~~~~~~----~~~~~~e~SAk~~~~i 147 (158)
T cd04103 116 PRVID----DARARQLCADM----KRCSYYETCATYGLNV 147 (158)
T ss_pred CcccC----HHHHHHHHHHh----CCCcEEEEecCCCCCH
Confidence 00111 11222232222 2357999999999999
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.48 E-value=2.6e-13 Score=123.60 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=88.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|.+|+|||||+|.|+....... .....+.|.+.....+++.++.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-----------------------------KLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-----------------------------ccCCCCcccccceeeEEECCeEE
Confidence 5899999999999999999985322110 00123667777777778889999
Q ss_pred EEEeCCCccch-------HhHHHHh----hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-cC---CceEEEEE
Q psy13961 88 TIIDAPGHRDF-------IKNMITG----TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-LG---VKQLIVGV 152 (459)
Q Consensus 88 ~liDtpG~~~~-------~~~~~~~----~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~~---ip~iivvi 152 (459)
++|||||..+. ...+.+. ...+|++|+|+|+.. ..+ ...+.+..++. +| .+++++++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~-------~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTE-------EEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCH-------HHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999997654 2222222 346899999999975 221 44455554443 23 24578889
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcC
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 182 (459)
|+.|....+-.++.+......++.+++.++
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 999987642112222223355666666654
No 267
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=8.1e-13 Score=123.32 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=58.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|.+|+|||||+++|+.....+ . ...+.|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------------~------~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------------A------AYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------------c------CCCCccccceEEEEEECCeEEE
Confidence 68999999999999999997321100 0 0113344444445666788999
Q ss_pred EEeCCCccch-------HhHHHHhhcccCEEEEEEECCCC
Q psy13961 89 IIDAPGHRDF-------IKNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 89 liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g 121 (459)
++||||+.++ ...+...++.+|++++|+|+++.
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 9999998543 34566778899999999998753
No 268
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.47 E-value=4.3e-13 Score=122.16 Aligned_cols=166 Identities=20% Similarity=0.231 Sum_probs=96.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CCE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKF 85 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~ 85 (459)
+++|+++|.+|+|||||+++|+.... .. .+... ... ...|.... .+.. ...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~-~~---------------~~~~~----~~~------~~~t~~~~--~~~~~~~~ 52 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGH-EE---------------EGAAP----TGV------VETTMKRT--PYPHPKFP 52 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCC-CC---------------CCccc----cCc------cccccCce--eeecCCCC
Confidence 36899999999999999999974210 00 00000 000 00111111 1111 134
Q ss_pred EEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 86 YVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 86 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.+.+|||||..+ |+.. .++..+|.+++|.|.. +. ......+..++..+.| +++|+||+|+.
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~---~~------~~d~~~~~~l~~~~~~-~ilV~nK~D~~ 120 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR---FS------SNDVKLAKAIQCMGKK-FYFVRTKVDRD 120 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC---CC------HHHHHHHHHHHHhCCC-EEEEEecccch
Confidence 789999999753 3322 2356789988875432 11 1344556677777888 89999999995
Q ss_pred CCCCc---------HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCC--CCCccccccCCCCCccccccccccCCCChhh
Q psy13961 159 EPPYS---------EARFEEIKKEVSGYIKKIGYNPATVAFVPISGW--HGDNMLEVSDKMPWFKGWAIERKEGKADGKC 227 (459)
Q Consensus 159 ~~~~~---------~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~--~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~ 227 (459)
.++.. +...+++.+.+...++..+. ...+++.+|+. .+.++ +.
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~--~~p~v~~vS~~~~~~~~~------------------------~~ 174 (197)
T cd04104 121 LSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV--SEPPVFLVSNFDPSDYDF------------------------PK 174 (197)
T ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHcCC--CCCCEEEEeCCChhhcCh------------------------HH
Confidence 42211 12244445555555544443 23468899998 44555 67
Q ss_pred HHHhccccCCC
Q psy13961 228 LIEALDAILPP 238 (459)
Q Consensus 228 Ll~~l~~~~~~ 238 (459)
|.+.+...+|.
T Consensus 175 l~~~~~~~l~~ 185 (197)
T cd04104 175 LRETLLKDLPA 185 (197)
T ss_pred HHHHHHHHhhH
Confidence 77777766654
No 269
>COG2262 HflX GTPases [General function prediction only]
Probab=99.46 E-value=2.8e-13 Score=130.81 Aligned_cols=154 Identities=22% Similarity=0.182 Sum_probs=102.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-C
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-K 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~ 84 (459)
....|+++|..|||||||+|+|+....... | ..-.|.+...+.+... +
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~-------------------------d------~LFATLdpttR~~~l~~g 239 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA-------------------------D------QLFATLDPTTRRIELGDG 239 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc-------------------------c------cccccccCceeEEEeCCC
Confidence 456899999999999999999973211111 1 1123566666666655 6
Q ss_pred EEEEEEeCCCccch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviN 153 (459)
+.+.+-||-|+.+- ++.++.....||.+++|||+++.... .+.......+.. ..+| +|+|.|
T Consensus 240 ~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~vL~el~~~~~p-~i~v~N 312 (411)
T COG2262 240 RKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDVLAEIGADEIP-IILVLN 312 (411)
T ss_pred ceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHHHHHcCCCCCC-EEEEEe
Confidence 89999999998654 33445556789999999999976322 133333344444 4567 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALD 233 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~ 233 (459)
|+|++.. .. ....+.. +. . ..+++||++|+|+ +.|.+.|.
T Consensus 313 KiD~~~~----~~---~~~~~~~-----~~---~-~~v~iSA~~~~gl------------------------~~L~~~i~ 352 (411)
T COG2262 313 KIDLLED----EE---ILAELER-----GS---P-NPVFISAKTGEGL------------------------DLLRERII 352 (411)
T ss_pred cccccCc----hh---hhhhhhh-----cC---C-CeEEEEeccCcCH------------------------HHHHHHHH
Confidence 9998862 11 1111111 11 1 4799999999999 77888777
Q ss_pred ccCC
Q psy13961 234 AILP 237 (459)
Q Consensus 234 ~~~~ 237 (459)
..++
T Consensus 353 ~~l~ 356 (411)
T COG2262 353 ELLS 356 (411)
T ss_pred HHhh
Confidence 6554
No 270
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.45 E-value=7.3e-13 Score=120.29 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=64.6
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHH-HHHHHHH--cCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAFT--LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~~--~~ip~iivviNK~D~~~ 159 (459)
....+.||||+|++++.. ...++.+|++|+|+|.++.. .+. .... ++..++. .++| +++|.||+|+.+
T Consensus 64 ~~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~---Sf~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPN---SLR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChh---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccc
Confidence 346899999999987532 33578899999999997652 121 2221 2233332 3567 889999999864
Q ss_pred CCCcHH-------------HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEA-------------RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~-------------~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+-... ...-..++.+.+.++++ ++|+.+||++|+|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V 184 (195)
T cd01873 135 ADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGV 184 (195)
T ss_pred cccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCH
Confidence 100000 00011233444445444 36999999999999
No 271
>KOG0087|consensus
Probab=99.45 E-value=1.6e-13 Score=120.42 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=98.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-- 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 84 (459)
-.+|+++|.+++|||-|+.+++.. ....+.+..+-++.....+..++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrn-------------------------------EF~~~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRN-------------------------------EFSLESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhccc-------------------------------ccCcccccceeEEEEeeceeecCcE
Confidence 458999999999999999999632 11112222333344444444444
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~ 161 (459)
.+..||||+|+++|...+..+.+.|-+++||.|.+... .|+ ....++..++.+ +++ +++|.||+||.+.
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~---Tfe---nv~rWL~ELRdhad~niv-imLvGNK~DL~~l- 134 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQ---TFE---NVERWLKELRDHADSNIV-IMLVGNKSDLNHL- 134 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHH---HHH---HHHHHHHHHHhcCCCCeE-EEEeecchhhhhc-
Confidence 57799999999999999999999999999999998651 111 233344455543 566 7788899999641
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+ .--.++-+.+.+.. ...|+.+||+.+.|+.+
T Consensus 135 ----r-aV~te~~k~~Ae~~-----~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 135 ----R-AVPTEDGKAFAEKE-----GLFFLETSALDATNVEK 166 (222)
T ss_pred ----c-ccchhhhHhHHHhc-----CceEEEecccccccHHH
Confidence 1 00112333333332 34799999999999843
No 272
>KOG0073|consensus
Probab=99.45 E-value=9.9e-13 Score=110.49 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=103.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|.++|.-||||||++.+|+.... +. -..|........+..++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~----------------------------~~------i~pt~gf~Iktl~~~~~ 60 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT----------------------------DT------ISPTLGFQIKTLEYKGY 60 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc----------------------------cc------cCCccceeeEEEEecce
Confidence 378999999999999999999963210 00 01244455566788899
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH----HHHHcCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL----LAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~----~~~~~~ip~iivviNK~D~~~~~ 161 (459)
.++++|..|+..+..-+.+++..+|+.|+|||.++... + .++..++. --+..|.| ++|+.||.|+.+.
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~---~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~- 132 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---M---QECKQELTELLVEERLAGAP-LLVLANKQDLPGA- 132 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---H---HHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc-
Confidence 99999999999999999999999999999999976421 1 13333332 23446778 7888899999852
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
.+.+.+..+ -.+..+++ ...++++-+||.+|+++.
T Consensus 133 l~~~~i~~~-~~L~~l~k-----s~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 133 LSLEEISKA-LDLEELAK-----SHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred cCHHHHHHh-hCHHHhcc-----ccCceEEEEeccccccHH
Confidence 222222111 22333333 235789999999998874
No 273
>KOG0080|consensus
Probab=99.45 E-value=7.3e-13 Score=110.62 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=96.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEe--eeeEEeeC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFETS 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~ 83 (459)
..++|.++|..|+|||+|+-+++... .| .+....|-+|. ....+...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~----------------------------fd---~~~~~tIGvDFkvk~m~vdg~ 58 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT----------------------------FD---DLHPTTIGVDFKVKVMQVDGK 58 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc----------------------------cC---ccCCceeeeeEEEEEEEEcCc
Confidence 45899999999999999999986311 11 11111122233 33344556
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHHH----cCCceEEEEEEccCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFT----LGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~----~~ip~iivviNK~D~~ 158 (459)
..++.||||+|+++|...+.++++.|-++|+|.|.+... .| .-.++|. .+.. .++- .++|.||+|..
T Consensus 59 ~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd---tf----~kLd~W~~Eld~Ystn~dii-kmlVgNKiDke 130 (209)
T KOG0080|consen 59 RLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD---TF----VKLDIWLKELDLYSTNPDII-KMLVGNKIDKE 130 (209)
T ss_pred eEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchh---hH----HhHHHHHHHHHhhcCCccHh-Hhhhcccccch
Confidence 689999999999999999999999999999999998652 22 1123332 2222 2344 35668999976
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
+ ++.- -.++=..+.++.+ +-|+..||++.+|+.
T Consensus 131 s-----~R~V-~reEG~kfAr~h~-----~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 131 S-----ERVV-DREEGLKFARKHR-----CLFIECSAKTRENVQ 163 (209)
T ss_pred h-----cccc-cHHHHHHHHHhhC-----cEEEEcchhhhccHH
Confidence 4 2211 1233334444443 358999999999983
No 274
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.43 E-value=3.3e-12 Score=116.32 Aligned_cols=116 Identities=17% Similarity=0.283 Sum_probs=75.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-----e
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-----T 82 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~ 82 (459)
++|+++|..++|||||+.+++... . ... ....-|.+.......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~--f-------------------------~~~--~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ--V-------------------------LGR--PSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--C-------------------------CCC--CCcceeeeEEEEEEEEcCCCCCC
Confidence 479999999999999999997421 0 000 00001222222222221 1
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--------------------
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-------------------- 142 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-------------------- 142 (459)
....+.||||+|+++|.......++.+|++|+|+|.++.. .++ ....++..+..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~---Sf~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~ 125 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK---SSQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQF 125 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH---HHH---HHHHHHHHHHHhhcccccccccccccccccc
Confidence 2367899999999999888888889999999999998762 221 22223333322
Q ss_pred --cCCceEEEEEEccCCCC
Q psy13961 143 --LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 143 --~~ip~iivviNK~D~~~ 159 (459)
.++| +++|.||+|+.+
T Consensus 126 ~~~~~P-iilVGnK~Dl~~ 143 (202)
T cd04102 126 GGNQIP-LLVIGTKLDQIP 143 (202)
T ss_pred CCCCce-EEEEEECccchh
Confidence 2577 899999999975
No 275
>KOG0095|consensus
Probab=99.42 E-value=1.2e-12 Score=107.79 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL--- 77 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--- 77 (459)
|.+-|--.+|+++|+.|+|||.|+.+++... .. ...|.||.+.+
T Consensus 1 medykflfkivlvgnagvgktclvrrftqgl--fp-------------------------------pgqgatigvdfmik 47 (213)
T KOG0095|consen 1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGL--FP-------------------------------PGQGATIGVDFMIK 47 (213)
T ss_pred CcccceeEEEEEEccCCcCcchhhhhhhccC--CC-------------------------------CCCCceeeeeEEEE
Confidence 5556667899999999999999999996421 11 01244554432
Q ss_pred -eEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEE
Q psy13961 78 -WKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVN 153 (459)
Q Consensus 78 -~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviN 153 (459)
..++.++-++.||||+|+++|...+.++.+.|++.|||.|.+-.+ .|. -.-+++..... .++- -|+|.|
T Consensus 48 tvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqp---sfd---clpewlreie~yan~kvl-kilvgn 120 (213)
T KOG0095|consen 48 TVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQP---SFD---CLPEWLREIEQYANNKVL-KILVGN 120 (213)
T ss_pred EEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCc---chh---hhHHHHHHHHHHhhcceE-EEeecc
Confidence 334455678999999999999999999999999999999997542 222 22234433332 2343 367789
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+. .++-+++.+-+... ...-|..+||+..+|+
T Consensus 121 k~d~~dr-------revp~qigeefs~~----qdmyfletsakea~nv 157 (213)
T KOG0095|consen 121 KIDLADR-------REVPQQIGEEFSEA----QDMYFLETSAKEADNV 157 (213)
T ss_pred ccchhhh-------hhhhHHHHHHHHHh----hhhhhhhhcccchhhH
Confidence 9999752 12222322222111 1234789999999998
No 276
>KOG1489|consensus
Probab=99.42 E-value=1.2e-12 Score=121.81 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE-
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF- 85 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~- 85 (459)
.-.|+++|.+|||||||+++|......+. ++.+ .|+........+++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa-----------------~YaF--------------TTL~P~iG~v~yddf~ 244 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVA-----------------HYAF--------------TTLRPHIGTVNYDDFS 244 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCccc-----------------ccce--------------eeeccccceeeccccc
Confidence 44789999999999999999986554432 1222 133333333444444
Q ss_pred EEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEE
Q psy13961 86 YVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVN 153 (459)
Q Consensus 86 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviN 153 (459)
.+++-|.||..+ .-...++.+..++..++|||.+.+-. .++-.|....+..+.. ...| .++|+|
T Consensus 245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~---~~p~~~~~lL~~ELe~yek~L~~rp-~liVaN 320 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL---RNPWQQLQLLIEELELYEKGLADRP-ALIVAN 320 (366)
T ss_pred eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc---CCHHHHHHHHHHHHHHHhhhhccCc-eEEEEe
Confidence 499999999642 11223344556899999999986511 0100011111111111 2356 677789
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|||+.+. +.. ..+++.+.+. +..++|+||++++++
T Consensus 321 KiD~~ea---e~~---~l~~L~~~lq-------~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 321 KIDLPEA---EKN---LLSSLAKRLQ-------NPHVVPVSAKSGEGL 355 (366)
T ss_pred ccCchhH---HHH---HHHHHHHHcC-------CCcEEEeeeccccch
Confidence 9999641 121 1233333322 225899999999988
No 277
>KOG0070|consensus
Probab=99.41 E-value=3.6e-13 Score=116.26 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=106.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|--+|||||++..|-. +.+ .. .-.|+..+...+++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~--~E~-------------------------vt-------tvPTiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKL--GEI-------------------------VT-------TVPTIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeecc--CCc-------------------------cc-------CCCccccceeEEEEc
Confidence 46678999999999999999988831 111 11 123677777788889
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HH---cCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~---~~ip~iivviNK~D~~~ 159 (459)
+..+++||..|+.++.+.+..++...+++|+|||+++... + ...++.+... .. .+.| ++++.||.|+++
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R---i---~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER---I---EEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 9999999999999999999999999999999999986521 1 1333333222 11 2456 788889999987
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. -... ++.+.+....+...+..+-.++|.+|+|+
T Consensus 133 a----ls~~----ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 133 A----LSAA----EITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred c----CCHH----HHHhHhhhhccCCCCcEEeeccccccccH
Confidence 3 1122 33334433344445678889999999998
No 278
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.41 E-value=4.2e-12 Score=101.56 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=80.9
Q ss_pred eEEEccCCCCCCcccceEEEEEEEecC-CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 323 GFVAGDSKASPPKATQDFTAQVIVLNH-PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 323 G~vl~~~~~~~~~~~~~f~a~i~~l~~-~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
|++++.+.... ++++|.+++.++.. +.++++++++.+|++|..+.|+|..+. .+.+.+|+.+.
T Consensus 1 G~vl~~~~~~~--~~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~ll~--------------~~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLL--PTRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVLLD--------------RDELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcC--CceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEeCC--------------ccccCCCCEEE
Confidence 78898766433 37999999999875 468999999999999999999998552 35688999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEECC--ceEEEEEE
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRDMR--QTVAVGVI 438 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd~~--~tva~G~V 438 (459)
++|+|++|+++...+ ||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~gd------rfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRGD------RFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCCC------eEEEeeCCCCeEEEeEEC
Confidence 999999999987654 99999998 99999986
No 279
>KOG0086|consensus
Probab=99.40 E-value=2.4e-12 Score=106.55 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=97.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee--eEEeeCCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL--WKFETSKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~ 85 (459)
.++.++|+.|.|||.|+.+++... +-|. ..+.+.++.+. ..+.....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~k---------------------------fkDd----ssHTiGveFgSrIinVGgK~v 58 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENK---------------------------FKDD----SSHTIGVEFGSRIVNVGGKTV 58 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhh---------------------------hccc----ccceeeeeecceeeeecCcEE
Confidence 589999999999999999997321 0111 11122223322 23334456
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceE--EEEEEccCCCCCCCc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL--IVGVNKMDSTEPPYS 163 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~i--ivviNK~D~~~~~~~ 163 (459)
++.||||+|+++|..-+.++.+.|-+++||.|++... .|+ ..-.++.-++.+--|.+ +++.||-|+.+ ..
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd---sfn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~~--~R 130 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD---SFN---ALTNWLTDARTLASPNIVVILCGNKKDLDP--ER 130 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchh---hHH---HHHHHHHHHHhhCCCcEEEEEeCChhhcCh--hh
Confidence 8899999999999999999999999999999998652 221 23335556666665554 45569999975 11
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+..+. +...+.. ...+.+..+|+++|+|+.+.
T Consensus 131 ~Vtfl----EAs~Faq-----Enel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 131 EVTFL----EASRFAQ-----ENELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhHH----HHHhhhc-----ccceeeeeecccccccHHHH
Confidence 22222 2223322 13456889999999999553
No 280
>KOG0076|consensus
Probab=99.40 E-value=6e-13 Score=112.89 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=108.1
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
..|+..+|.++|.-+|||||++.++-...... .| + ++ + .+--.|+.++..+++.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~--------------~~-~-------l~--~--~ki~~tvgLnig~i~v 66 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKA--------------YG-G-------LN--P--SKITPTVGLNIGTIEV 66 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhh--------------hc-C-------CC--H--HHeecccceeecceee
Confidence 46788999999999999999999984321100 00 0 11 0 1112355666667777
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCC-ceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG-EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g-~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
.+..+.|||..|++.....+..++..++++|+||||.+. .++..- .+.+.....-...|+| +++.+||-|+.+.
T Consensus 67 ~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~- 141 (197)
T KOG0076|consen 67 CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA- 141 (197)
T ss_pred ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh-
Confidence 788999999999999999999999999999999999873 232111 0222233344457899 6777899999863
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
....++...+.. .+..+ ....+|.|+||++|+|+.
T Consensus 142 ---~~~~El~~~~~~-~e~~~--~rd~~~~pvSal~gegv~ 176 (197)
T KOG0076|consen 142 ---MEAAELDGVFGL-AELIP--RRDNPFQPVSALTGEGVK 176 (197)
T ss_pred ---hhHHHHHHHhhh-hhhcC--CccCccccchhhhcccHH
Confidence 222222222221 22222 245789999999999984
No 281
>PLN00023 GTP-binding protein; Provisional
Probab=99.40 E-value=3.2e-12 Score=122.24 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=87.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe---
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--- 81 (459)
...++|+++|+.++|||||+.+|+... . ... ....-|.+.......+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~--F-------------------------~~~--~~pTIG~d~~ik~I~~~~~~ 69 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGS--S-------------------------IAR--PPQTIGCTVGVKHITYGSPG 69 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--c-------------------------ccc--cCCceeeeEEEEEEEECCcc
Confidence 446899999999999999999997321 0 000 00011222211111221
Q ss_pred ----------eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--------
Q psy13961 82 ----------TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-------- 143 (459)
Q Consensus 82 ----------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-------- 143 (459)
.....+.||||+|+++|...+...++.+|++|+|+|.+... .+. ....++..+...
T Consensus 70 ~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~---SFe---nL~kWl~eI~~~~~~s~p~~ 143 (334)
T PLN00023 70 SSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR---TKT---SLQKWASEVAATGTFSAPLG 143 (334)
T ss_pred cccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcccccccc
Confidence 12357999999999999988888899999999999998642 121 222333333332
Q ss_pred -------CCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcC
Q psy13961 144 -------GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184 (459)
Q Consensus 144 -------~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 184 (459)
++| +++|.||+|+....-.........++.+++.++.|+-
T Consensus 144 s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 144 SGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred cccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 366 8899999999652100000011345566666666654
No 282
>KOG1532|consensus
Probab=99.39 E-value=1e-13 Score=125.98 Aligned_cols=194 Identities=18% Similarity=0.262 Sum_probs=111.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCCh-HHHHHHHHH-------HHHhCCCcceeeeeccCchhHHhcCceEEee
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKE-------AQEMGKGSFKYAWVLDKLKAERERGITIDIA 76 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~~-------~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~ 76 (459)
+.+..|.++|..||||||++.+|......-.. ..+-++.+. +.-+=|...+|..+|.+.....+.||+..++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678999999999999999999754311100 000000000 0001122233333444444444566666555
Q ss_pred eeEEe-----------eCCEEEEEEeCCCccchHhHHHHh--------hcccCEEEEEEECCCCceeccccCCCchHHHH
Q psy13961 77 LWKFE-----------TSKFYVTIIDAPGHRDFIKNMITG--------TSQADCAVLIVAAGTGEFEAGISKNGQTREHA 137 (459)
Q Consensus 77 ~~~~~-----------~~~~~~~liDtpG~~~~~~~~~~~--------~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~ 137 (459)
.+... .+...+.||||||+.+-.....+| ...+-++++|||....-.+..|+. ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMlYAc 174 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHHHHH
Confidence 43221 134678999999997643322222 245788999999876544444433 445566
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCCcHHH---HHHHHHHHHh--------hhhhcCcC----CceeeEeecCCCCCCcc
Q psy13961 138 LLAFTLGVKQLIVGVNKMDSTEPPYSEAR---FEEIKKEVSG--------YIKKIGYN----PATVAFVPISGWHGDNM 201 (459)
Q Consensus 138 ~~~~~~~ip~iivviNK~D~~~~~~~~~~---~~~i~~~l~~--------~l~~~g~~----~~~~~~i~iSa~~g~~i 201 (459)
.++...++| +|++.||.|+.+..+..++ |+...+.+.. +...+... -.++..+.+|+.+|.|.
T Consensus 175 Silyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 175 SILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 677888999 8999999999986554333 3333333331 11000000 12467899999999998
No 283
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4.3e-12 Score=116.43 Aligned_cols=167 Identities=21% Similarity=0.281 Sum_probs=105.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEEee
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKFET 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~ 82 (459)
.++++||.++|..|+|||+|+|+|........ .+ -|++.+... ....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v------------------------~~-------vg~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV------------------------SK-------VGVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee------------------------ee-------cccCCCchhhHHhhc
Confidence 56789999999999999999999974221110 00 112222111 11234
Q ss_pred CCEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCC-ceEEEEEEc
Q psy13961 83 SKFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV-KQLIVGVNK 154 (459)
Q Consensus 83 ~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~i-p~iivviNK 154 (459)
+...++||||||..+ |.......+...|.+++++++.+...- ...+.+......+. .+++++||.
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~-------~d~~f~~dVi~~~~~~~~i~~VtQ 157 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALG-------TDEDFLRDVIILGLDKRVLFVVTQ 157 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcccc-------CCHHHHHHHHHhccCceeEEEEeh
Confidence 567899999999876 777778888999999999999875321 33333333333333 348999999
Q ss_pred cCCCCC--CCc----------HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCC
Q psy13961 155 MDSTEP--PYS----------EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGK 222 (459)
Q Consensus 155 ~D~~~~--~~~----------~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~ 222 (459)
.|+..+ +|. ++..++-.+.+.+++.. --|++..|+..+.|+
T Consensus 158 ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl--------------------- 210 (296)
T COG3596 158 ADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGL--------------------- 210 (296)
T ss_pred hhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccH---------------------
Confidence 998754 343 11122222333333322 236777777777777
Q ss_pred CChhhHHHhccccCCC
Q psy13961 223 ADGKCLIEALDAILPP 238 (459)
Q Consensus 223 ~~g~~Ll~~l~~~~~~ 238 (459)
+.|+.++...+|.
T Consensus 211 ---~~l~~ali~~lp~ 223 (296)
T COG3596 211 ---KELVRALITALPV 223 (296)
T ss_pred ---HHHHHHHHHhCcc
Confidence 7888888777763
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.38 E-value=1.1e-12 Score=109.10 Aligned_cols=114 Identities=20% Similarity=0.192 Sum_probs=70.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+|+|+.++|||||+++|+..... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6899999999999999999753211 0000011122333333333333445689
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHH---HHHHHH--cCCceEEEEEEccC
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH---ALLAFT--LGVKQLIVGVNKMD 156 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~---~~~~~~--~~ip~iivviNK~D 156 (459)
++|++|++.+.......+..+|++|+|+|.++.. .++ +..+. +...+. ..+| +++|.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~~---~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SLE---YLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HHH---HHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HHH---HHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 9999999888776555588999999999998752 111 22222 222221 3488 899999998
No 285
>KOG1191|consensus
Probab=99.37 E-value=1e-12 Score=128.90 Aligned_cols=118 Identities=24% Similarity=0.252 Sum_probs=85.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+..+.|+++|++|+|||||+|+|..+...|- . ...|.|.|.--..|+.++
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIV------------------------S------pv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIV------------------------S------PVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEe------------------------C------CCCCcchhhheeEeecCC
Confidence 3458999999999999999999986544432 1 135888888888899999
Q ss_pred EEEEEEeCCCccc-h--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC-----------
Q psy13961 85 FYVTIIDAPGHRD-F--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG----------- 144 (459)
Q Consensus 85 ~~~~liDtpG~~~-~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~----------- 144 (459)
+.+.|+||+|..+ - +......+..||++++|+||..+.++ +.......+...+
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~~~~~~~ 388 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVVIVNKME 388 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEEEecccc
Confidence 9999999999876 1 22233456789999999999776555 3333333333222
Q ss_pred CceEEEEEEccCCCC
Q psy13961 145 VKQLIVGVNKMDSTE 159 (459)
Q Consensus 145 ip~iivviNK~D~~~ 159 (459)
..+++++.||+|+..
T Consensus 389 ~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 389 KQRIILVANKSDLVS 403 (531)
T ss_pred ccceEEEechhhccC
Confidence 134788899999976
No 286
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.36 E-value=1.3e-11 Score=97.75 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=77.6
Q ss_pred CCCCeeEEeEEEEEeC--------CceeEEEEEEEeeeEecCCeEEEecC-------C-----eEEEEEEEEecccccee
Q psy13961 242 TEKPLRLPLQDVYKIG--------GIGTVPVGRVETGVIKPGMLVTFAPA-------N-----LTTEVKSVEMHHEALQE 301 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~--------~~G~v~~G~v~sG~l~~gd~v~~~p~-------~-----~~~~V~~I~~~~~~v~~ 301 (459)
.++|++|+|.++|.+. ..|.|+.|++.+|.|++||+|.+.|. + ...+|.+|+..+..+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4688999999999997 78999999999999999999999875 1 35789999999999999
Q ss_pred EcCCCeEEE---EEccCcccCcceeEEEccC
Q psy13961 302 AVPGDNVGF---NVKNVSVKELRRGFVAGDS 329 (459)
Q Consensus 302 a~aGd~v~l---~l~~~~~~~i~~G~vl~~~ 329 (459)
|.||+.+++ -..++...|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 3446778899999999854
No 287
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=8e-12 Score=117.29 Aligned_cols=118 Identities=23% Similarity=0.259 Sum_probs=78.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
...|+|+|++|+|||||+..++.....+.. |. =.|-.+...+|+.....
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-------------------YP------------FTTK~i~vGhfe~~~~R 216 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-------------------YP------------FTTKGIHVGHFERGYLR 216 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCC-------------------CC------------ccccceeEeeeecCCce
Confidence 468999999999999999999755443321 11 11334455678888889
Q ss_pred EEEEeCCCccch--------HhHHHHhhc-ccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 87 VTIIDAPGHRDF--------IKNMITGTS-QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 87 ~~liDtpG~~~~--------~~~~~~~~~-~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
+.+|||||.-|- -...+.+++ ..+++++++|.+.. .|+....|..-.-.+-..++.| +++|+||+|.
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~ 292 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYSLEEQISLLEEIKELFKAP-IVVVINKIDI 292 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCCHHHHHHHHHHHHHhcCCC-eEEEEecccc
Confidence 999999996431 223444554 48999999999864 3443212222222233345666 8999999999
Q ss_pred CC
Q psy13961 158 TE 159 (459)
Q Consensus 158 ~~ 159 (459)
.+
T Consensus 293 ~~ 294 (346)
T COG1084 293 AD 294 (346)
T ss_pred cc
Confidence 86
No 288
>KOG0093|consensus
Probab=99.34 E-value=2.4e-12 Score=105.94 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeE-Eee-CCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK-FET-SKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~-~~~-~~~ 85 (459)
.++.++|...+|||+++-+.+.. +|..+++. .+.++..... ++. ..-
T Consensus 22 fKlliiGnssvGKTSfl~ry~dd----------------------SFt~afvs---------TvGidFKvKTvyr~~kRi 70 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADD----------------------SFTSAFVS---------TVGIDFKVKTVYRSDKRI 70 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcc----------------------ccccceee---------eeeeeEEEeEeeecccEE
Confidence 48999999999999999887532 22212221 1122222211 222 235
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH---HHcCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA---FTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~---~~~~ip~iivviNK~D~~~~~~ 162 (459)
.+.+|||+|+++|...+-.++++|++.||+.|.+... +|. ....++-+. ...+.| +|+|.||+|+.+
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee---Sf~---svqdw~tqIktysw~naq-vilvgnKCDmd~--- 140 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFN---SVQDWITQIKTYSWDNAQ-VILVGNKCDMDS--- 140 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH---HHH---HHHHHHHHheeeeccCce-EEEEecccCCcc---
Confidence 7899999999999988889999999999999998652 231 111122222 235778 899999999975
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++.- ..+..+.+..++|| .|+..||+.+.|+
T Consensus 141 --eRvi-s~e~g~~l~~~LGf-----efFEtSaK~NinV 171 (193)
T KOG0093|consen 141 --ERVI-SHERGRQLADQLGF-----EFFETSAKENINV 171 (193)
T ss_pred --ceee-eHHHHHHHHHHhCh-----HHhhhcccccccH
Confidence 2211 12445566677787 5899999999998
No 289
>KOG0079|consensus
Probab=99.33 E-value=8.5e-12 Score=102.82 Aligned_cols=144 Identities=17% Similarity=0.258 Sum_probs=100.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeE--EeeCCEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKFY 86 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~--~~~~~~~ 86 (459)
+..|+|.+++|||+|+-++... .|.-++.+ .+.+|..... +......
T Consensus 10 kllIigDsgVGKssLl~rF~dd----------------------tFs~sYit---------TiGvDfkirTv~i~G~~Vk 58 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD----------------------TFSGSYIT---------TIGVDFKIRTVDINGDRVK 58 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc----------------------ccccceEE---------EeeeeEEEEEeecCCcEEE
Confidence 5679999999999999888421 11111211 1222333343 3445678
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccCCCCCCCcH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D~~~~~~~~ 164 (459)
+.||||+|++.|...+..+.+..+++++|.|.+.++ +|. ..+.++..++.. .+|. ++|.||.|.++.
T Consensus 59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~---Nv~rWLeei~~ncdsv~~-vLVGNK~d~~~R---- 127 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFN---NVKRWLEEIRNNCDSVPK-VLVGNKNDDPER---- 127 (198)
T ss_pred EEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhH---hHHHHHHHHHhcCccccc-eecccCCCCccc----
Confidence 999999999999999999999999999999999883 332 556666655543 5774 777899999752
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+ .-..++.+.+....| +.++.+|++..+|+
T Consensus 128 -r-vV~t~dAr~~A~~mg-----ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 128 -R-VVDTEDARAFALQMG-----IELFETSAKENENV 157 (198)
T ss_pred -e-eeehHHHHHHHHhcC-----chheehhhhhcccc
Confidence 1 122345555655555 46899999999998
No 290
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.33 E-value=3e-12 Score=113.01 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=66.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe---eC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE---TS 83 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---~~ 83 (459)
...|.++|+.|||||+|+.+|.+.... ..+ .++.... .+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~-----------------------~T~-----------tS~e~n~-~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV-----------------------PTV-----------TSMENNI-AYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--------------------------B--------------SSEEE-ECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC-----------------------Cee-----------ccccCCc-eEEeecCC
Confidence 357999999999999999999764110 000 0111111 111 23
Q ss_pred CEEEEEEeCCCccchHhHHHHh---hcccCEEEEEEECCCCceeccccCCCchHHHHHHHH---H---cCCceEEEEEEc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITG---TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF---T---LGVKQLIVGVNK 154 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~---~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~---~---~~ip~iivviNK 154 (459)
+..+.+||+|||.+........ +..+.++|+|||++.- ...+. .+-|+++.+. . .++| ++|++||
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~~---~~Ae~Ly~iL~~~~~~~~~~p-iLIacNK 121 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKELR---DVAEYLYDILSDTEVQKNKPP-ILIACNK 121 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHHH---HHHHHHHHHHHHHHCCTT--E-EEEEEE-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhHH---HHHHHHHHHHHhhhhccCCCC-EEEEEeC
Confidence 4678999999999987776665 7889999999999741 11111 3334443221 1 3455 9999999
Q ss_pred cCCCC
Q psy13961 155 MDSTE 159 (459)
Q Consensus 155 ~D~~~ 159 (459)
.|+..
T Consensus 122 ~Dl~~ 126 (181)
T PF09439_consen 122 QDLFT 126 (181)
T ss_dssp TTSTT
T ss_pred ccccc
Confidence 99976
No 291
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.32 E-value=4.7e-11 Score=114.14 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=85.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
-..+|+++|+.|+|||||+++|+...-.... + -.+.........+++......++.++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~-------------~--------~~~~~~~~~~~T~~i~~~~~~i~~~g~ 61 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSD-------------Y--------PPDPAEEHIDKTVEIKSSKAEIEENGV 61 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCcccc-------------C--------CCCccccccCCceEEEEEEEEEEECCE
Confidence 3579999999999999999999643111000 0 00000111222233333334444444
Q ss_pred -EEEEEEeCCCccchHh---------------------HHHH-----hh--cccCEEEEEEECCCCceeccccCCCchHH
Q psy13961 85 -FYVTIIDAPGHRDFIK---------------------NMIT-----GT--SQADCAVLIVAAGTGEFEAGISKNGQTRE 135 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~---------------------~~~~-----~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e 135 (459)
..+++|||||..++.. +... .+ ..+|+++++++++.. ++. ....+
T Consensus 62 ~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~----~l~--~~D~~ 135 (276)
T cd01850 62 KLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH----GLK--PLDIE 135 (276)
T ss_pred EEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC----CCC--HHHHH
Confidence 5799999999755422 1111 11 147899999998642 111 13355
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 136 HALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 136 ~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
.+..+.. ++| +++|+||+|+.. +......++.+.+.++..++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~----~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT----PEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC----HHHHHHHHHHHHHHHHHcCC
Confidence 5555553 788 889999999975 24455666777777776554
No 292
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.30 E-value=5.5e-11 Score=110.08 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=78.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
...+|+++|..|+|||||+++|....-. .+....+............
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 52 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFP-------------------------------EGYPPTIGNLDPAKTIEPYRR 52 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCc-------------------------------ccCCCceeeeeEEEEEEeCCC
Confidence 3489999999999999999999743211 0111111111111112222
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
...+.+|||+|+++|...+..+...++++++++|..... . +. ..+++....+..+ +.| ++++.||+|+..
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~--~-~~--~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~ 125 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE--S-SD--ELTEEWLEELRELAPDDVP-ILLVGNKIDLFD 125 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch--h-hh--HHHHHHHHHHHHhCCCCce-EEEEeccccccc
Confidence 456899999999999999999999999999999997521 1 11 1233333344443 477 899999999986
No 293
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=1.3e-11 Score=116.57 Aligned_cols=115 Identities=21% Similarity=0.314 Sum_probs=72.4
Q ss_pred EEEEEEeCCCccchHh------HHHHhhcc--cCEEEEEEECCCCceeccccCCCchHHHHHHH-----HHcCCceEEEE
Q psy13961 85 FYVTIIDAPGHRDFIK------NMITGTSQ--ADCAVLIVAAGTGEFEAGISKNGQTREHALLA-----FTLGVKQLIVG 151 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~------~~~~~~~~--aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-----~~~~ip~iivv 151 (459)
..+.++||||+.++.. ...+.+.. ++++++|+|+..+..+ ...+....+ ...++| +++|
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~-------~d~~~~~~l~~~~~~~~~~~-~i~v 168 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP-------SDFVSLLLLALSVQLRLGLP-QIPV 168 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH-------HHHHHHHHHHHHHHHHcCCC-EEEE
Confidence 4789999999876532 22333433 8999999999765322 222222211 256888 7888
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHH------------------------hhhhhcCcCCceeeEeecCCCCCCccccccCC
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVS------------------------GYIKKIGYNPATVAFVPISGWHGDNMLEVSDK 207 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~------------------------~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~ 207 (459)
+||+|+.+.+ ..++..+.+. +.++.++ ...+++++|+++++|+
T Consensus 169 ~nK~D~~~~~----~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl------ 235 (253)
T PRK13768 169 LNKADLLSEE----ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGF------ 235 (253)
T ss_pred EEhHhhcCch----hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCH------
Confidence 9999998632 1122222121 1222333 1347899999999999
Q ss_pred CCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 208 MPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 208 ~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
+.|++.|.+.++.
T Consensus 236 ------------------~~L~~~I~~~l~~ 248 (253)
T PRK13768 236 ------------------DELYAAIQEVFCG 248 (253)
T ss_pred ------------------HHHHHHHHHHcCC
Confidence 7899999887764
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.29 E-value=3.8e-11 Score=110.78 Aligned_cols=154 Identities=20% Similarity=0.320 Sum_probs=97.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-eCCEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TSKFYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~~ 87 (459)
+|.++|+.+|||||+.+.+...... .+.+.-|.|+++....+. .+...+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p------------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP------------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G------------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc------------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 6899999999999999998643211 111223667777766665 345699
Q ss_pred EEEeCCCccchHhHH-----HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCC
Q psy13961 88 TIIDAPGHRDFIKNM-----ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 88 ~liDtpG~~~~~~~~-----~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~ 160 (459)
.+||+||+..|.... ..-++.+++.|+|+|+....+...+. .....+..+.. -++. +.|++.|||+..+
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999999887663 44468899999999998443332111 22223333333 3455 7888999999976
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG 198 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g 198 (459)
+..++.++++.+.+.+.+...+.. .+.++.+|....
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D~ 162 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWDE 162 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTST
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcCc
Confidence 666777888888888888766653 577888887763
No 295
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.29 E-value=4.7e-11 Score=92.53 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=71.7
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeE
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGF 324 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~ 324 (459)
..|.++|++++.|+++.|+|.+|.|++|+.+.+.|.+ ...+|++|+.++..+++|.+|+.|++.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4678999988889999999999999999999999999 67799999999999999999999999999865 999999
Q ss_pred EE
Q psy13961 325 VA 326 (459)
Q Consensus 325 vl 326 (459)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 97
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.28 E-value=1.6e-12 Score=121.21 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=52.8
Q ss_pred EEEEEEeCCCccchHhHHH------Hhhc--ccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 85 FYVTIIDAPGHRDFIKNMI------TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~------~~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
..+.|+|||||.++...+. ..+. ..=++++++|+..-.....+- ......+.....+++| .|.|+||+|
T Consensus 91 ~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp -SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 3789999999988755433 3333 356789999986431111010 0111122233458999 678899999
Q ss_pred CCCCCCcHHH-----------------HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEAR-----------------FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~-----------------~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+.. .+.. +....+++..++..++. ...++|+|+.+++++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~ 225 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGM 225 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHH
Confidence 98621 1111 12223333344443332 127999999999998
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.24 E-value=3.4e-11 Score=96.75 Aligned_cols=127 Identities=26% Similarity=0.282 Sum_probs=83.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+++++|.+++|||||++.|-... .+ . -.|.. +++.++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~-~l-------------------------y---------kKTQA-----ve~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND-TL-------------------------Y---------KKTQA-----VEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch-hh-------------------------h---------cccce-----eeccCc--
Confidence 379999999999999999994210 00 0 00111 233222
Q ss_pred EEEeCCC----ccchHhHHHHhhcccCEEEEEEECCCCc--eeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 88 TIIDAPG----HRDFIKNMITGTSQADCAVLIVAAGTGE--FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 88 ~liDtpG----~~~~~~~~~~~~~~aD~~ilVvda~~g~--~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..||||| |..+....+..+..+|++++|-.++++. |+.+| +.....| +|-+++|.|++++
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f------------~~~~~k~-vIgvVTK~DLaed- 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF------------LDIGVKK-VIGVVTKADLAED- 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc------------ccccccc-eEEEEecccccch-
Confidence 2689999 4555555666678899999999998763 22222 2223445 7888999999852
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+++. ..+++|...|- -+++.+|+.+..++
T Consensus 106 ---~dI~----~~~~~L~eaGa----~~IF~~s~~d~~gv 134 (148)
T COG4917 106 ---ADIS----LVKRWLREAGA----EPIFETSAVDNQGV 134 (148)
T ss_pred ---HhHH----HHHHHHHHcCC----cceEEEeccCcccH
Confidence 4444 34445555664 36899999999888
No 298
>KOG0090|consensus
Probab=99.22 E-value=7.6e-11 Score=103.86 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=78.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
...|.++|..|||||+|+-+|++..- +..-.++..+...+..++..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~----------------------------------~~TvtSiepn~a~~r~gs~~ 83 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH----------------------------------RGTVTSIEPNEATYRLGSEN 83 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc----------------------------------cCeeeeeccceeeEeecCcc
Confidence 46899999999999999999975310 00112444455556666777
Q ss_pred EEEEeCCCccchHhHHHHhhc---ccCEEEEEEECCCCceeccccCCCchHHHHHHH--HH---cCCceEEEEEEccCCC
Q psy13961 87 VTIIDAPGHRDFIKNMITGTS---QADCAVLIVAAGTGEFEAGISKNGQTREHALLA--FT---LGVKQLIVGVNKMDST 158 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~---~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~--~~---~~ip~iivviNK~D~~ 158 (459)
.+|+|.|||.+........+. .+-++|+|||+..- .... ...-|.++.. .. .+.|+++++.||.|+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f--~k~v---rdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF--LKNV---RDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc--chhh---HHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 999999999998888777776 78999999998642 1111 1233333211 11 3455599999999997
Q ss_pred CC
Q psy13961 159 EP 160 (459)
Q Consensus 159 ~~ 160 (459)
.+
T Consensus 159 tA 160 (238)
T KOG0090|consen 159 TA 160 (238)
T ss_pred hc
Confidence 64
No 299
>KOG0091|consensus
Probab=99.19 E-value=7.1e-11 Score=99.14 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=96.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee--EEee--
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW--KFET-- 82 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~~-- 82 (459)
..++.++|..-+|||+|+..++... . +.+.| .|+.+.++ -++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gk--f----------------------aelsd---------ptvgvdffarlie~~p 54 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGK--F----------------------AELSD---------PTVGVDFFARLIELRP 54 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCc--c----------------------cccCC---------CccchHHHHHHHhcCC
Confidence 4688999999999999999986321 0 11111 12211111 1111
Q ss_pred -CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcCCc---eEEEEEEccCC
Q psy13961 83 -SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLGVK---QLIVGVNKMDS 157 (459)
Q Consensus 83 -~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~ip---~iivviNK~D~ 157 (459)
..-++.||||+|+++|...+.++.+++-++++|.|.+.. .+|+ ....++..+ ...+-| -+.+|..|.|+
T Consensus 55 g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr---~sfe---hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL 128 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR---ESFE---HVENWVKEAAMATQGPDKVVFLLVGHKSDL 128 (213)
T ss_pred CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch---hhHH---HHHHHHHHHHHhcCCCCeeEEEEeccccch
Confidence 124788999999999999999999999999999999875 1221 222222222 223322 25667799999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccccc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVS 205 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~ 205 (459)
.+ ..+- ..++.+.+.+..|. .|+.+|+++|.|+.++.
T Consensus 129 ~S--qRqV----t~EEaEklAa~hgM-----~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 129 QS--QRQV----TAEEAEKLAASHGM-----AFVETSAKNGCNVEEAF 165 (213)
T ss_pred hh--hccc----cHHHHHHHHHhcCc-----eEEEecccCCCcHHHHH
Confidence 75 2222 23455556666665 59999999999996653
No 300
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.19 E-value=4.3e-10 Score=109.18 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=28.2
Q ss_pred EEEEEEeCCCc----cchH---hHHHHhhcccCEEEEEEECCC
Q psy13961 85 FYVTIIDAPGH----RDFI---KNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 85 ~~~~liDtpG~----~~~~---~~~~~~~~~aD~~ilVvda~~ 120 (459)
..+.|+||||. +++. ...+..++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999997 3332 245566899999999999974
No 301
>PTZ00099 rab6; Provisional
Probab=99.18 E-value=6.3e-11 Score=105.74 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=67.3
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HH--cCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FT--LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~--~~ip~iivviNK~D~~~ 159 (459)
....+.||||||+++|...+...++.+|++|+|+|++... .+. ...+++..+ .. .++| +++|.||+|+.+
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---sf~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---SFE---NTTKWIQDILNERGKDVI-IALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 3468899999999999988888899999999999998752 121 222333322 22 2456 789999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +...+ +...+....+ ..++++||++|.|+
T Consensus 100 ~~--~v~~~----e~~~~~~~~~-----~~~~e~SAk~g~nV 130 (176)
T PTZ00099 100 LR--KVTYE----EGMQKAQEYN-----TMFHETSAKAGHNI 130 (176)
T ss_pred cc--CCCHH----HHHHHHHHcC-----CEEEEEECCCCCCH
Confidence 10 11111 1222222222 35899999999999
No 302
>KOG0088|consensus
Probab=99.18 E-value=2.7e-11 Score=100.96 Aligned_cols=148 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.--+|||+|+-+++.. ....+.+..++.. ++. + ...++.....
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~En--kFn~kHlsTlQAS------------F~~--------k-------k~n~ed~ra~ 63 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVEN--KFNCKHLSTLQAS------------FQN--------K-------KVNVEDCRAD 63 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHh--hcchhhHHHHHHH------------Hhh--------c-------ccccccceee
Confidence 568999999999999999888632 1111111111110 000 0 1112334457
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-c--CCceEEEEEEccCCCCCCCc
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-L--GVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~--~ip~iivviNK~D~~~~~~~ 163 (459)
+.||||+|+++|-..=.-+++.+|+++||.|.++. .+|. ..+.+...++. + .+. +++|.||+|+..
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFq---KVKnWV~Elr~mlGnei~-l~IVGNKiDLEe---- 132 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQ---KVKNWVLELRTMLGNEIE-LLIVGNKIDLEE---- 132 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHH---HHHHHHHHHHHHhCCeeE-EEEecCcccHHH----
Confidence 89999999999976656667899999999999876 3342 22333333333 3 355 778889999964
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++ .-..++...+.+..|. .++.+||+.+.|+
T Consensus 133 -eR-~Vt~qeAe~YAesvGA-----~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 133 -ER-QVTRQEAEAYAESVGA-----LYMETSAKDNVGI 163 (218)
T ss_pred -hh-hhhHHHHHHHHHhhch-----hheecccccccCH
Confidence 22 2234455555555553 4789999999998
No 303
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.17 E-value=2e-09 Score=101.14 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=73.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|.+|+|||||+|+|+...... ..+ ..+.|..........++
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~------------------------v~~------~~~~T~~~~~~~~~~~g 78 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAA------------------------TSA------FQSETLRVREVSGTVDG 78 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcc------------------------cCC------CCCceEEEEEEEEEECC
Confidence 456899999999999999999997432110 000 11335555555566778
Q ss_pred EEEEEEeCCCccchHh------H----HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCC---ceE
Q psy13961 85 FYVTIIDAPGHRDFIK------N----MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGV---KQL 148 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~------~----~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~i---p~i 148 (459)
..+++|||||..+... . +...+ ...|++++|...+...+. ......+..+. .+|. .++
T Consensus 79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~------~~d~~llk~I~e~fG~~i~~~~ 152 (249)
T cd01853 79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD------YLDLPLLRAITDSFGPSIWRNA 152 (249)
T ss_pred eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhChhhHhCE
Confidence 8999999999876521 1 11222 257888888766532111 12223333333 2442 358
Q ss_pred EEEEEccCCCCC
Q psy13961 149 IVGVNKMDSTEP 160 (459)
Q Consensus 149 ivviNK~D~~~~ 160 (459)
++|+||.|...+
T Consensus 153 ivV~T~~d~~~p 164 (249)
T cd01853 153 IVVLTHAASSPP 164 (249)
T ss_pred EEEEeCCccCCC
Confidence 999999999754
No 304
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.17 E-value=2.2e-10 Score=108.14 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=85.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-eCCEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TSKFYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~~ 87 (459)
-|+++|-||+|||||++++......|.. +.+ .|...+..-+. .....+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIad-----------------YpF--------------TTL~PnLGvV~~~~~~sf 209 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIAD-----------------YPF--------------TTLVPNLGVVRVDGGESF 209 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccC-----------------Ccc--------------ccccCcccEEEecCCCcE
Confidence 5789999999999999999765544421 111 12222222222 356679
Q ss_pred EEEeCCCcc-----------chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHH-----HHHcCCceEEEE
Q psy13961 88 TIIDAPGHR-----------DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL-----AFTLGVKQLIVG 151 (459)
Q Consensus 88 ~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~-----~~~~~ip~iivv 151 (459)
++-|.||.. +|++.. ..+-+.++|||.+...-.... .+....... ....+.| .+||
T Consensus 210 v~ADIPGLIEGAs~G~GLG~~FLrHI----ERt~vL~hviD~s~~~~~dp~---~~~~~i~~EL~~Y~~~L~~K~-~ivv 281 (369)
T COG0536 210 VVADIPGLIEGASEGVGLGLRFLRHI----ERTRVLLHVIDLSPIDGRDPI---EDYQTIRNELEKYSPKLAEKP-RIVV 281 (369)
T ss_pred EEecCcccccccccCCCccHHHHHHH----HhhheeEEEEecCcccCCCHH---HHHHHHHHHHHHhhHHhccCc-eEEE
Confidence 999999964 466554 446889999999754210000 011111111 2234677 5777
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+||||++. +++.+++..+.+.+. .+. ..+.++||.+++|+
T Consensus 282 ~NKiD~~~---~~e~~~~~~~~l~~~---~~~----~~~~~ISa~t~~g~ 321 (369)
T COG0536 282 LNKIDLPL---DEEELEELKKALAEA---LGW----EVFYLISALTREGL 321 (369)
T ss_pred EeccCCCc---CHHHHHHHHHHHHHh---cCC----CcceeeehhcccCH
Confidence 89999764 345555555554432 222 12233999999998
No 305
>KOG0395|consensus
Probab=99.16 E-value=1.1e-10 Score=105.66 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee---eEEee
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL---WKFET 82 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~---~~~~~ 82 (459)
...+|+++|..|+|||+|+-++++..- .+. .-.|++..+ ..++.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f---------------------------~~~------y~ptied~y~k~~~v~~ 48 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF---------------------------VED------YDPTIEDSYRKELTVDG 48 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc---------------------------ccc------cCCCccccceEEEEECC
Confidence 357899999999999999999974210 110 111222211 12333
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-cCCceEEEEEEccCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~~ip~iivviNK~D~~~~~ 161 (459)
....+.|+||+|+++|..+...++..+|+.++|.+.++. ..|+...+.++++...+. ..+| +++|.||.|+...
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~---~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~- 123 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR---SSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE- 123 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH---HHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc-
Confidence 456788999999999999999999999999999999875 333322233444422222 3468 8999999999751
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. ..++-+.+....+ ++|+.+||+...|+
T Consensus 124 -R~V----~~eeg~~la~~~~-----~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 124 -RQV----SEEEGKALARSWG-----CAFIETSAKLNYNV 153 (196)
T ss_pred -ccc----CHHHHHHHHHhcC-----CcEEEeeccCCcCH
Confidence 111 1222333333333 46999999999888
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.16 E-value=5.1e-10 Score=108.77 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=60.4
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..++.+.|+||+|...-.. .....+|.+++|++...|. .+ |.. ....+.+.. ++|+||+|+.+.
T Consensus 146 ~~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd---~i----q~~----k~gi~E~aD-IiVVNKaDl~~~- 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGD---EL----QGI----KKGIMELAD-LIVINKADGDNK- 209 (332)
T ss_pred ccCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchH---HH----HHH----Hhhhhhhhh-eEEeehhcccch-
Confidence 3568999999999863221 1355799999998744331 11 111 111233342 677899999863
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcC--CceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYN--PATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~--~~~~~~i~iSa~~g~~i 201 (459)
...+....++...+....-. ....+++++||++|.|+
T Consensus 210 ---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 210 ---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred ---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 23344555555554432100 01247999999999999
No 307
>KOG0097|consensus
Probab=99.15 E-value=3.5e-10 Score=92.47 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=96.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--CCE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET--SKF 85 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~ 85 (459)
.+-.++|..|+|||.|+.+++... +|...++ .+.++.+.+-++. .+-
T Consensus 12 fkyiiigdmgvgkscllhqftekk---------------------------fmadcph----tigvefgtriievsgqki 60 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKK---------------------------FMADCPH----TIGVEFGTRIIEVSGQKI 60 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHH---------------------------HhhcCCc----ccceecceeEEEecCcEE
Confidence 467899999999999999986421 1222221 1222333333443 345
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH----HHHHHcCCce--EEEEEEccCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA----LLAFTLGVKQ--LIVGVNKMDSTE 159 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~----~~~~~~~ip~--iivviNK~D~~~ 159 (459)
++.||||+|+++|..-+.++.+.+-++++|.|.+.. .|-.|+ .-++.+--|. ++++.||.|+..
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrr----------stynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhh----------hhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 789999999999999999999999999999999865 344444 3344444444 455669999965
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
.....++ +.+.+.+..|. -|+..||++|+|+.
T Consensus 131 --qrdv~ye----eak~faeengl-----~fle~saktg~nve 162 (215)
T KOG0097|consen 131 --QRDVTYE----EAKEFAEENGL-----MFLEASAKTGQNVE 162 (215)
T ss_pred --cccCcHH----HHHHHHhhcCe-----EEEEecccccCcHH
Confidence 1122233 44445554443 68999999999984
No 308
>KOG0071|consensus
Probab=99.15 E-value=3.2e-10 Score=92.80 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=100.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|.++|-.+|||||++-.|... ... ..-.|+..+...+.+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~--~~~--------------------------------~~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLG--QSV--------------------------------TTIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcC--CCc--------------------------------ccccccceeEEEEEeeee
Confidence 4689999999999999999888421 111 011244555566777888
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH---HH-cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA---FT-LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~---~~-~~ip~iivviNK~D~~~~~ 161 (459)
.++++|..|+.+..+-+.+++...-+.|+|+|+.+.. .++ ..++.+.-+ +. ...+ ++|..||-|++++
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d---r~e---eAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A- 133 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RIE---EARNELHRIINDREMRDAI-ILILANKQDLPDA- 133 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchh---hHH---HHHHHHHHHhCCHhhhcce-EEEEecCcccccc-
Confidence 9999999999999999999999999999999997641 111 222222111 11 2456 6777899999873
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
-..+ +++++++.-......+-+.|.+|.+|+++.
T Consensus 134 ---~~pq----ei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 134 ---MKPQ----EIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred ---cCHH----HHHHHhccccccCCccEeeccccccchhHH
Confidence 1223 334344322344456778899999998884
No 309
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.08 E-value=6.8e-10 Score=104.03 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=59.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.-.|+++|.+++|||||++.|+.....+. ++.| .|....-.-+++.+.+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva-----------------~y~F--------------TTl~~VPG~l~Y~ga~ 111 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVA-----------------DYPF--------------TTLEPVPGMLEYKGAQ 111 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcccc-----------------ccCc--------------eecccccceEeecCce
Confidence 46899999999999999999974221111 1111 1222223347788999
Q ss_pred EEEEeCCCccch-------HhHHHHhhcccCEEEEEEECCCC
Q psy13961 87 VTIIDAPGHRDF-------IKNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 87 ~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g 121 (459)
+.|+|+||...- -+..++.++.||.+++|+|+...
T Consensus 112 IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 112 IQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred EEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 999999996432 24467778999999999999754
No 310
>KOG0074|consensus
Probab=99.07 E-value=6.4e-10 Score=91.19 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=98.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|.++|--++||||++.+|..+. .....+ |-..+...+++.+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED------------------------------~~hltp----T~GFn~k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED------------------------------PRHLTP----TNGFNTKKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC------------------------------hhhccc----cCCcceEEEeecC
Confidence 457899999999999999999994211 000011 2223334455554
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HH---HHcCCceEEEEEEccCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LA---FTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~---~~~~ip~iivviNK~D~~~ 159 (459)
..+++||..|+....+-+..++...|+.|+|||+++.-+ |+ .+-+|+. ++ +...+| +.+..||-|+..
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe---E~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE---EISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH---HHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 899999999999999999999999999999999876421 11 3333433 22 334678 666679999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
. ...+++...+ .-.++....+.+-.+|++++++...
T Consensus 134 a----a~~eeia~kl----nl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 134 A----AKVEEIALKL----NLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred h----cchHHHHHhc----chhhhhhceEEeeeCccccccCccC
Confidence 2 2223332222 2223334457788899999988743
No 311
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.06 E-value=2.1e-09 Score=82.44 Aligned_cols=80 Identities=36% Similarity=0.532 Sum_probs=71.6
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEec--CCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAP--ANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p--~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
++++|.++|..++.|+++.|+|.+|+|++||.+.+.| .....+|++|+.++.+++.+.||+.+++.+... .+++.|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 3678999999998999999999999999999999999 777889999999999999999999999987543 378999
Q ss_pred EEEc
Q psy13961 324 FVAG 327 (459)
Q Consensus 324 ~vl~ 327 (459)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9886
No 312
>KOG0072|consensus
Probab=99.05 E-value=3.4e-10 Score=93.15 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...++.++|--|+||+|++-+|- .+.+.. .-.|+..+...+.+.+.
T Consensus 17 ~e~rililgldGaGkttIlyrlq--vgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQ--VGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcc--cCcccc--------------------------------cCCCCCcCccccccccc
Confidence 46789999999999999887762 222110 11245555566677888
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccCCCCCCCc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|..|+....+-+.-++...|.+|+|||.++... .+. -..+...++. .+.--.++|+.||+|....
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr-is~----a~~el~~mL~E~eLq~a~llv~anKqD~~~~--- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR-ISI----AGVELYSMLQEEELQHAKLLVFANKQDYSGA--- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh-hhh----hHHHHHHHhccHhhcCceEEEEeccccchhh---
Confidence 99999999999988888889999999999999976411 111 1122222222 2222337888999998752
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...++....|.....+...+.++..||.+|+|+
T Consensus 135 -----~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 135 -----LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred -----hhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 122233222221122234578999999999999
No 313
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.5e-09 Score=106.10 Aligned_cols=143 Identities=22% Similarity=0.289 Sum_probs=100.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
|+.-|+++|++|.|||||+..|+.... ..+-.+...-+|+ .....+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~t----------------------------k~ti~~i~GPiTv------vsgK~R 113 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------KQTIDEIRGPITV------VSGKTR 113 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHH----------------------------HhhhhccCCceEE------eeccee
Confidence 567788999999999999999974321 1111112223444 234568
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|+.|| +-+..|+.-+..||.++|+||++-| |+ . .|.|.+.++..+|.|+++-|+|..|+... +.
T Consensus 114 RiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-fE----M--ETmEFLnil~~HGmPrvlgV~ThlDlfk~---~s 180 (1077)
T COG5192 114 RITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-FE----M--ETMEFLNILISHGMPRVLGVVTHLDLFKN---PS 180 (1077)
T ss_pred EEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-ce----e--hHHHHHHHHhhcCCCceEEEEeecccccC---hH
Confidence 99999999 5567888888999999999999977 33 3 89999999999999999999999999863 35
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWH 197 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~ 197 (459)
.+..++..++.-+-.--| ....++.+|+..
T Consensus 181 tLr~~KKrlkhRfWtEiy--qGaKlFylsgV~ 210 (1077)
T COG5192 181 TLRSIKKRLKHRFWTEIY--QGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHhhhHHHHHc--CCceEEEecccc
Confidence 556666655533211112 134566666543
No 314
>KOG0081|consensus
Probab=99.02 E-value=1.8e-10 Score=96.15 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=75.5
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~ 161 (459)
..+.||||+|+++|...+-.-.+.|-+.+|+.|.+.. .+|- ..+.++.+++.. .-|.+|++.||.|+.+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSFL---nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-- 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSFL---NVRNWLSQLQTHAYCENPDIVLCGNKADLED-- 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHHH---HHHHHHHHHHHhhccCCCCEEEEcCccchhh--
Confidence 4688999999999999988889999999999999754 2232 455555555543 4688999999999975
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
.+ .-..++...+..++|+ |++.+||-+|.|+.+
T Consensus 139 ---~R-~Vs~~qa~~La~kygl-----PYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 139 ---QR-VVSEDQAAALADKYGL-----PYFETSACTGTNVEK 171 (219)
T ss_pred ---hh-hhhHHHHHHHHHHhCC-----CeeeeccccCcCHHH
Confidence 22 1122344455556665 799999999999854
No 315
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.02 E-value=5.1e-09 Score=104.79 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.2
Q ss_pred EEEEEEeCCCcc----c---hHhHHHHhhcccCEEEEEEECC
Q psy13961 85 FYVTIIDAPGHR----D---FIKNMITGTSQADCAVLIVAAG 119 (459)
Q Consensus 85 ~~~~liDtpG~~----~---~~~~~~~~~~~aD~~ilVvda~ 119 (459)
..+.|+||||.. + .....+..++.+|++++|||+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 468899999953 2 2335566688999999999996
No 316
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.01 E-value=8.2e-10 Score=101.39 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=54.2
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
+..+.|++|.|.-... .......+..+.|+|+..+.. .. .......+.+ .++++||+|+.+. .
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~---------~~--~~~~~~~~~a-~iiv~NK~Dl~~~--~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD---------KP--LKYPGMFKEA-DLIVINKADLAEA--V 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc---------hh--hhhHhHHhhC-CEEEEEHHHcccc--c
Confidence 4578899999931100 011123566678999875421 11 1122334667 5788999999752 1
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.....+..+.+++ .. ...+++++||++|+|+
T Consensus 165 ~~~~~~~~~~l~~----~~---~~~~i~~~Sa~~g~gv 195 (207)
T TIGR00073 165 GFDVEKMKADAKK----IN---PEAEIILMSLKTGEGL 195 (207)
T ss_pred hhhHHHHHHHHHH----hC---CCCCEEEEECCCCCCH
Confidence 1223333343332 22 2367999999999999
No 317
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.00 E-value=2.6e-09 Score=80.90 Aligned_cols=68 Identities=35% Similarity=0.509 Sum_probs=61.0
Q ss_pred eeEEEEEEEeeeEecCCeEEEec--CCeE---EEEEEEEeccccceeEcCCCeEEEEEccCcccC-cceeEEEc
Q psy13961 260 GTVPVGRVETGVIKPGMLVTFAP--ANLT---TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRGFVAG 327 (459)
Q Consensus 260 G~v~~G~v~sG~l~~gd~v~~~p--~~~~---~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~-i~~G~vl~ 327 (459)
|++++|||++|+|++||+|++.| ++.+ .+|++|+.++.....+.+|+.+++.+...+.++ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999966 3344 999999999999999999999999988877888 89999996
No 318
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.00 E-value=1.5e-09 Score=106.12 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=77.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCc---eEEeeeeEEee
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI---TIDIALWKFET 82 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~---Ti~~~~~~~~~ 82 (459)
..++|+|+|.+|+|||||+|+|.. .+.- ..+++ ..|+ |.+. ..+..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrG-l~~~---------------d~~aA-------------~tGv~etT~~~--~~Y~~ 82 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRG-LGHE---------------DEGAA-------------PTGVVETTMEP--TPYPH 82 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT---TT---------------STTS---------------SSSHSCCTS---EEEE-
T ss_pred CceEEEEECCCCCCHHHHHHHHhC-CCCC---------------CcCcC-------------CCCCCcCCCCC--eeCCC
Confidence 468999999999999999999942 1110 01110 1122 2222 12222
Q ss_pred CC-EEEEEEeCCCcc-------chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 83 SK-FYVTIIDAPGHR-------DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 83 ~~-~~~~liDtpG~~-------~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.. .+++|||.||.. +|+..+ .+...|..|++.+..-. ......+..++.+|.| +.+|-||
T Consensus 83 p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 83 PKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEec
Confidence 22 369999999963 344433 35678987776654311 0233344556678999 8898999
Q ss_pred cCCC--------CCCCcHH-HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCC
Q psy13961 155 MDST--------EPPYSEA-RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGD 199 (459)
Q Consensus 155 ~D~~--------~~~~~~~-~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~ 199 (459)
+|.. +..++++ .++++.+...+-|++.|.. ..+++-+|...-.
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~--~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS--EPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S--S--EEEB-TTTTT
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC--cCceEEEeCCCcc
Confidence 9961 1123333 3566677777777766663 3467888887543
No 319
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.95 E-value=5.2e-09 Score=81.36 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEccCccc
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVK 318 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~ 318 (459)
+.||.+.|..+...++.|++.++||++|+|+.||.|++.. +.+.++.+|... ..++++|.|||++++. + .+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~--g--l~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILT--G--LK 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEE--C--CC
Confidence 3688899999988899999999999999999999998765 455678887653 5788999999999875 4 46
Q ss_pred CcceeEEEcc
Q psy13961 319 ELRRGFVAGD 328 (459)
Q Consensus 319 ~i~~G~vl~~ 328 (459)
++..||+|++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 7889999863
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.94 E-value=1.2e-08 Score=98.99 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=56.8
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..++.+.|+||||...- ....+..+|.++++.+...+ ...+... ....++| .++++||+|+.+.
T Consensus 124 ~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~----------~el~~~~-~~l~~~~-~ivv~NK~Dl~~~- 187 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG----------DDLQGIK-AGLMEIA-DIYVVNKADGEGA- 187 (300)
T ss_pred hCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc----------HHHHHHH-HHHhhhc-cEEEEEcccccch-
Confidence 35789999999996532 22345668998888654322 1111111 1235788 5777899999863
Q ss_pred CcHHHHHHHHHH----HHhhhhh-cCcCCceeeEeecCCCCCCccc
Q psy13961 162 YSEARFEEIKKE----VSGYIKK-IGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 162 ~~~~~~~~i~~~----l~~~l~~-~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
......... +..+.+. .++ ..+++++||.+|+|+.
T Consensus 188 ---~~~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~ 227 (300)
T TIGR00750 188 ---TNVTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGID 227 (300)
T ss_pred ---hHHHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHH
Confidence 111111111 1222111 112 2358999999999983
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.92 E-value=2.1e-08 Score=92.33 Aligned_cols=138 Identities=24% Similarity=0.295 Sum_probs=78.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
+||+++|..||||||++|.|+.....-. .......|...........++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999974321100 00112344445555567889999
Q ss_pred EEEeCCCccc-------hHhHHHHh----hcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcC---CceEEEEE
Q psy13961 88 TIIDAPGHRD-------FIKNMITG----TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLG---VKQLIVGV 152 (459)
Q Consensus 88 ~liDtpG~~~-------~~~~~~~~----~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~---ip~iivvi 152 (459)
++|||||.-+ ...++... ...+|++|||+... .... ..+..+..+. .+| ..+++|++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~-------~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTE-------EDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SH-------HHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchH-------HHHHHHHHHHHHccHHHHhHhhHHh
Confidence 9999999643 22333332 34689999999987 2111 3334443332 344 35688889
Q ss_pred EccCCCCCCCcHHHHHHHH-HHHHhhhhhcC
Q psy13961 153 NKMDSTEPPYSEARFEEIK-KEVSGYIKKIG 182 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~-~~l~~~l~~~g 182 (459)
|..|....+..++-+..-. ..++.+++.++
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 9998776422111122111 34667777665
No 322
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.90 E-value=1.1e-08 Score=79.23 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=63.0
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
..|.+++..++.|.+.++||++|+|++||.|++...+.+.+|.+|.. ...++++|.|||++++. + .++++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT--G--LKQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE--C--CCCcccC
Confidence 45666666778899999999999999999999887776778888754 35788999999999874 5 4668899
Q ss_pred EEEc
Q psy13961 324 FVAG 327 (459)
Q Consensus 324 ~vl~ 327 (459)
|+||
T Consensus 79 dtl~ 82 (83)
T cd04092 79 DTLV 82 (83)
T ss_pred CEEe
Confidence 9997
No 323
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.90 E-value=1.7e-08 Score=98.48 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=77.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc--CCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcC---ceEEeee---e
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG---ITIDIAL---W 78 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~--~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g---~Ti~~~~---~ 78 (459)
.+.|+++|++++|||||+++|+... ..+... +.+ ....|..+.. ..| .|.+..+ .
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~----~~k------------~Ra~DELpqs-~~GktItTTePkfvP~k 79 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNE----YDK------------ERAQDELPQS-AAGKTIMTTEPKFVPNE 79 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccch----hHH------------hHHHhccCcC-CCCCCcccCCCccccCc
Confidence 5789999999999999999998653 222211 000 0001111111 235 4555555 2
Q ss_pred EEe-----eCCEEEEEEeCCCccc-------------------------hHhH----HHHhhc-ccCEEEEEE-ECCCCc
Q psy13961 79 KFE-----TSKFYVTIIDAPGHRD-------------------------FIKN----MITGTS-QADCAVLIV-AAGTGE 122 (459)
Q Consensus 79 ~~~-----~~~~~~~liDtpG~~~-------------------------~~~~----~~~~~~-~aD~~ilVv-da~~g~ 122 (459)
.++ .-..++.|+||+|..+ |... +..-+. .+|++|+|. |++-+.
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d 159 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD 159 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence 232 2236899999999632 1111 223345 699999999 875322
Q ss_pred eec-cccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 123 FEA-GISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 123 ~~~-~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+. +. ..--.+.+..++..++| +++++||.|-
T Consensus 160 I~Re~y--~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 160 IPREDY--VEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred cccccc--hHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 110 01 01344567788999999 8999999994
No 324
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.87 E-value=2.4e-08 Score=77.90 Aligned_cols=82 Identities=23% Similarity=0.219 Sum_probs=65.1
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---cccceeEcCCCeEEEEEccC-cccCcc
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQEAVPGDNVGFNVKNV-SVKELR 321 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~a~aGd~v~l~l~~~-~~~~i~ 321 (459)
|.+.|.++...++.|+++++||++|+|++||.+++...+++.+|..|... ..++++|.|||++++. .++ +..++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 35667777777888999999999999999999998877767778777653 4688999999999874 122 235688
Q ss_pred eeEEEcc
Q psy13961 322 RGFVAGD 328 (459)
Q Consensus 322 ~G~vl~~ 328 (459)
.||+|++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999973
No 325
>KOG0410|consensus
Probab=98.87 E-value=7.4e-09 Score=96.88 Aligned_cols=138 Identities=25% Similarity=0.246 Sum_probs=88.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-eCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TSK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~ 84 (459)
+...|+++|..|||||||+++|+ ......++++.. |.|....... -++
T Consensus 177 s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLFA------------------------------TLDpT~h~a~Lpsg 225 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLFA------------------------------TLDPTLHSAHLPSG 225 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHH-hhhcCccchhhe------------------------------eccchhhhccCCCC
Confidence 34579999999999999999998 333333222211 2222222222 245
Q ss_pred EEEEEEeCCCccchH--------hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCce------EEE
Q psy13961 85 FYVTIIDAPGHRDFI--------KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ------LIV 150 (459)
Q Consensus 85 ~~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~------iiv 150 (459)
..+.+.||-|+..-+ ..++.....+|.++.|+|.+.+..+ .|-...+..++.+|+|. +|=
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 688899999975432 2344445779999999999987544 25556777888888863 344
Q ss_pred EEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 151 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|=||+|..+. +.+ + +..--+++|+++|+|+
T Consensus 300 VdnkiD~e~~-~~e-------~-------------E~n~~v~isaltgdgl 329 (410)
T KOG0410|consen 300 VDNKIDYEED-EVE-------E-------------EKNLDVGISALTGDGL 329 (410)
T ss_pred hccccccccc-cCc-------c-------------ccCCccccccccCccH
Confidence 4578887542 100 0 1112589999999999
No 326
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.86 E-value=2.1e-08 Score=77.85 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=58.2
Q ss_pred eCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEcc
Q psy13961 256 IGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGD 328 (459)
Q Consensus 256 ~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~ 328 (459)
.++.|+++++||++|+|++||.|++...+...+|..|.. .+.++++|.|||++++. + .+++..||+||+
T Consensus 12 ~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--g--l~~~~~Gdtl~~ 84 (85)
T cd03689 12 PAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--N--PGNFQIGDTLTE 84 (85)
T ss_pred CCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--C--CCCccccCEeeC
Confidence 567899999999999999999999887776778888754 35788999999999986 3 567889999984
No 327
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.85 E-value=4.6e-08 Score=93.38 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=68.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|.+|+||||++|+|+....... .. .+ +.+...........+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~v------------------------s~-f~-----s~t~~~~~~~~~~~G 85 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATV------------------------SA-FQ-----SEGLRPMMVSRTRAG 85 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccc------------------------cC-CC-----CcceeEEEEEEEECC
Confidence 3567999999999999999999984321110 00 00 011111112233578
Q ss_pred EEEEEEeCCCccchHh---HHHHhh------cccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcC---CceEEEE
Q psy13961 85 FYVTIIDAPGHRDFIK---NMITGT------SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLG---VKQLIVG 151 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~---~~~~~~------~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~---ip~iivv 151 (459)
..+++|||||..+... .....+ ..+|++++|...+...+. ...+..+..+. .+| ..++||+
T Consensus 86 ~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~------~~DkqlLk~Iqe~FG~~iw~~~IVV 159 (313)
T TIGR00991 86 FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVD------TLDGQVIRAITDSFGKDIWRKSLVV 159 (313)
T ss_pred eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCC------HHHHHHHHHHHHHhhhhhhccEEEE
Confidence 8999999999876421 111112 258999999655432111 02233333222 223 2458999
Q ss_pred EEccCCCC
Q psy13961 152 VNKMDSTE 159 (459)
Q Consensus 152 iNK~D~~~ 159 (459)
+|+.|...
T Consensus 160 fTh~d~~~ 167 (313)
T TIGR00991 160 LTHAQFSP 167 (313)
T ss_pred EECCccCC
Confidence 99999774
No 328
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.85 E-value=2.5e-08 Score=77.26 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=62.9
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
..|.++...++.|++.++||++|+|++||.|++...+...+|.+|.. ...++++|.|||++++. + .++++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--~~~~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--G--LKDTATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE--C--CCCCccC
Confidence 34555666677899999999999999999999988777788888765 25788999999999984 5 4568899
Q ss_pred EEEcc
Q psy13961 324 FVAGD 328 (459)
Q Consensus 324 ~vl~~ 328 (459)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99863
No 329
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.84 E-value=9.7e-09 Score=90.83 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCEEEEEEeCCCccch----HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
....+.|+||||..+. ...+...+..+|++|+|++++..... ...+.+........+.+++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~-------~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTE-------SDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGG-------HHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccch-------HHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3457999999997542 23456667889999999999875332 334444444444555589999995
No 330
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=9.2e-09 Score=95.60 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=47.9
Q ss_pred EEEEEEeCCCccc--------hH-----hHHHHhhc-ccCEEEEEEECCCCceeccccCCCch-HHHHHHHHHcCCceEE
Q psy13961 85 FYVTIIDAPGHRD--------FI-----KNMITGTS-QADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFTLGVKQLI 149 (459)
Q Consensus 85 ~~~~liDtpG~~~--------~~-----~~~~~~~~-~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~~~ip~ii 149 (459)
..++|+||||..+ .. ..+..++. ..+.+++|+||+.+... +. .+.+..+...+.+ .+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~-------~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLAN-------SDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCc-------hhHHHHHHHHHHcCCc-EE
Confidence 6899999999852 11 12344556 45699999999866322 33 4566666777888 78
Q ss_pred EEEEccCCCCC
Q psy13961 150 VGVNKMDSTEP 160 (459)
Q Consensus 150 vviNK~D~~~~ 160 (459)
+|+||+|..++
T Consensus 197 ~ViTK~D~~~~ 207 (240)
T smart00053 197 GVITKLDLMDE 207 (240)
T ss_pred EEEECCCCCCc
Confidence 88999999863
No 331
>KOG0077|consensus
Probab=98.84 E-value=3.2e-08 Score=83.77 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=80.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.-++.++|--|||||||+..|-.+. +++ .-.|...+...+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDr----------------------------l~q------hvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDR----------------------------LGQ------HVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccc----------------------------ccc------cCCCcCCChHHheecC
Confidence 566789999999999999999884211 000 0112222222344567
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
-.++-+|..||..-..-+..++..+|+++++|||.+... + ...++++..+. ...+| +++..||+|.+.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er---~---~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER---F---AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH---h---HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 789999999998888888888999999999999976421 1 14555554333 24688 7888999999874
No 332
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.83 E-value=7.9e-09 Score=90.64 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=54.4
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccC-EEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQAD-CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD-~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
..+.||...| ........ -..| .-|+|||..+|+-- ....+.. + .. . =++||||.|+++ +.
T Consensus 97 ~Dll~iEs~G--NL~~~~sp--~L~d~~~v~VidvteGe~~--P~K~gP~-----i---~~-a-DllVInK~DLa~--~v 158 (202)
T COG0378 97 LDLLFIESVG--NLVCPFSP--DLGDHLRVVVIDVTEGEDI--PRKGGPG-----I---FK-A-DLLVINKTDLAP--YV 158 (202)
T ss_pred CCEEEEecCc--ceecccCc--chhhceEEEEEECCCCCCC--cccCCCc-----e---eE-e-eEEEEehHHhHH--Hh
Confidence 4778888888 22111111 1234 88999999988411 1110000 0 01 2 256789999986 43
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..+.+...+..+++ + .+.+|+.+|+++|+|+
T Consensus 159 ~~dlevm~~da~~~------n-p~~~ii~~n~ktg~G~ 189 (202)
T COG0378 159 GADLEVMARDAKEV------N-PEAPIIFTNLKTGEGL 189 (202)
T ss_pred CccHHHHHHHHHHh------C-CCCCEEEEeCCCCcCH
Confidence 44445555555443 2 3578999999999999
No 333
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.82 E-value=7.6e-08 Score=72.48 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=61.4
Q ss_pred CCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 244 ~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
.|-++.|...|...... ++.|+|..|+|++|..| ....-.+|++|+.+++++++|.+||.|++.+.+.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 46678888777777777 77779999999999999 33357799999999999999999999999999843 89999
Q ss_pred EEE
Q psy13961 324 FVA 326 (459)
Q Consensus 324 ~vl 326 (459)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 987
No 334
>KOG4252|consensus
Probab=98.80 E-value=2e-09 Score=91.89 Aligned_cols=150 Identities=23% Similarity=0.197 Sum_probs=92.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
-++++|+|.-++||||++.+++. +|-.. +-+.+ .-.|..+ +. + .+..++..
T Consensus 20 aiK~vivGng~VGKssmiqryCk---gifTk-----------dykkt----Igvdfle--rq--i-------~v~~Edvr 70 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCK---GIFTK-----------DYKKT----IGVDFLE--RQ--I-------KVLIEDVR 70 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhc---ccccc-----------ccccc----cchhhhh--HH--H-------HhhHHHHH
Confidence 46899999999999999999862 22110 00000 0011111 10 0 11223456
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH--HHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL--LAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~--~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.+|||+|+++|-..+..+.+.|.+.+||.+.++.. +|+ -+.++-. ......+| .++|-||+|+++. ++
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~---SFe---a~~~w~~kv~~e~~~IP-tV~vqNKIDlved--s~ 141 (246)
T KOG4252|consen 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY---SFE---ATLEWYNKVQKETERIP-TVFVQNKIDLVED--SQ 141 (246)
T ss_pred HHHHHhccchhHHHHHHHHhccccceEEEEecccHH---HHH---HHHHHHHHHHHHhccCC-eEEeeccchhhHh--hh
Confidence 779999999999999999999999999999987652 221 3333332 23346799 6888999999862 22
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
-.-+ +++.+.+.+. ..++-+|++..-|+.+
T Consensus 142 ~~~~----evE~lak~l~-----~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 142 MDKG----EVEGLAKKLH-----KRLYRTSVKEDFNVMH 171 (246)
T ss_pred cchH----HHHHHHHHhh-----hhhhhhhhhhhhhhHH
Confidence 2222 2222333322 3577889998888743
No 335
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.79 E-value=6.7e-08 Score=75.40 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=62.7
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEe----ccccceeEcCCCeEEEEEccCccc
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVK 318 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~ 318 (459)
|++.|.++...+..|+++++||++|+|++||.|++...+ ...+|.+|.. ...++++|.|||++++. + .+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--g--l~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--G--IE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--C--CC
Confidence 467788888888889999999999999999999876652 3467778743 34788999999999664 4 46
Q ss_pred CcceeEEEc
Q psy13961 319 ELRRGFVAG 327 (459)
Q Consensus 319 ~i~~G~vl~ 327 (459)
++..||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 788999986
No 336
>KOG3886|consensus
Probab=98.79 E-value=2e-08 Score=89.65 Aligned_cols=153 Identities=16% Similarity=0.268 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-CEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-KFY 86 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~ 86 (459)
.+|.++|..|||||++=..+......- .-+.-|-|||+.+.+..+. +-.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl~ 54 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNLV 54 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhhe
Confidence 579999999999999876664221110 1123477888877666543 368
Q ss_pred EEEEeCCCccchHhHHHHh-----hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-CCceEEEEEEccCCCCC
Q psy13961 87 VTIIDAPGHRDFIKNMITG-----TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~-----~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-~ip~iivviNK~D~~~~ 160 (459)
+++||+.|++.|+++..+. ++..++.++|.|+...+++..+. .....+..+.+. -.-++++.+.|||++..
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 8999999999999887763 57899999999998877764442 222233333222 22337788999999976
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG 198 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g 198 (459)
+-.+..|++-.+.+..+-+.+ .+.++|+|-+..
T Consensus 132 d~r~~if~~r~~~l~~~s~~~-----~~~~f~TsiwDe 164 (295)
T KOG3886|consen 132 DARELIFQRRKEDLRRLSRPL-----ECKCFPTSIWDE 164 (295)
T ss_pred chHHHHHHHHHHHHHHhcccc-----cccccccchhhH
Confidence 555555555555554433222 255777776553
No 337
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.77 E-value=6.5e-08 Score=74.50 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=58.1
Q ss_pred eEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 250 LQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 250 i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
|..+...+. |+++++||++|+|++||.|++...+.+.+|.+|... ..+++++.|||++++. ++ + ++.||+
T Consensus 5 vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~--~-~~~Gdt 78 (81)
T cd04091 5 AFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI--D-CASGDT 78 (81)
T ss_pred EEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--C-cccCCE
Confidence 333333344 999999999999999999999888878888887642 5788999999999854 43 4 889999
Q ss_pred Ecc
Q psy13961 326 AGD 328 (459)
Q Consensus 326 l~~ 328 (459)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 963
No 338
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=9.9e-08 Score=86.75 Aligned_cols=94 Identities=12% Similarity=0.215 Sum_probs=54.1
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
+...++|+|.|.. ...... ...+|.+|.|+|+..+.. ...+. ........ ++++||+|+.+. .
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~--------~~~~~---~~qi~~ad-~~~~~k~d~~~~--~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDK--------IPRKG---GPGITRSD-LLVINKIDLAPM--V 153 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhh--------hhhhh---HhHhhhcc-EEEEEhhhcccc--c
Confidence 4577899999931 111111 122688999999986521 10111 11222222 666899999851 1
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
....+.+.+.++.+ . ...+++++||++|+|+
T Consensus 154 ~~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 154 GADLGVMERDAKKM----R---GEKPFIFTNLKTKEGL 184 (199)
T ss_pred cccHHHHHHHHHHh----C---CCCCEEEEECCCCCCH
Confidence 13344444554443 1 2467999999999999
No 339
>KOG0083|consensus
Probab=98.76 E-value=2.3e-09 Score=86.89 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=70.7
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
...++.+|||+|+++|..-+-.+.+.+|+.+|+.|.... .+|+ ..+.++..+... .+. +.++.||+|+..
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydiank---asfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK---ASFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAH 117 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc---hhHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccch
Confidence 446889999999999999999999999999999998765 2232 344444444333 344 567789999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
++.-. .++=+++.+.+| +||..+||++|-|+.
T Consensus 118 -----er~v~-~ddg~kla~~y~-----ipfmetsaktg~nvd 149 (192)
T KOG0083|consen 118 -----ERAVK-RDDGEKLAEAYG-----IPFMETSAKTGFNVD 149 (192)
T ss_pred -----hhccc-cchHHHHHHHHC-----CCceeccccccccHh
Confidence 22111 122233444444 479999999999983
No 340
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=1e-07 Score=90.45 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=22.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+....|.++|.+|||||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999865
No 341
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=2.7e-07 Score=85.13 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=54.9
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..++.++|+.|-|--.-- ..-...+|..++|+-...|. .+ |... +-.+.+.. |+|+||.|+..
T Consensus 119 aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD---~i----Q~~K----aGimEiaD-i~vVNKaD~~g-- 181 (266)
T PF03308_consen 119 AAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGD---EI----QAIK----AGIMEIAD-IFVVNKADRPG-- 181 (266)
T ss_dssp HTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCC---CC----CTB-----TTHHHH-S-EEEEE--SHHH--
T ss_pred HcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCcc---HH----HHHh----hhhhhhcc-EEEEeCCChHH--
Confidence 357899999999843211 11245689999999887762 22 2211 11122344 56679999653
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i 201 (459)
.+....+++..+....-... ..|++.+||.++.|+
T Consensus 182 -----A~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi 218 (266)
T PF03308_consen 182 -----ADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI 218 (266)
T ss_dssp -----HHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH
T ss_pred -----HHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH
Confidence 24445555555542211111 258999999999998
No 342
>KOG2486|consensus
Probab=98.62 E-value=1.2e-07 Score=87.22 Aligned_cols=157 Identities=17% Similarity=0.085 Sum_probs=95.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
....+++.|..|+|||+|++.+++..... ..++ .+.|.|..+.++.. +.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~-------------~t~k---------------~K~g~Tq~in~f~v---~~ 183 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIA-------------DTSK---------------SKNGKTQAINHFHV---GK 183 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhh-------------hhcC---------------CCCccceeeeeeec---cc
Confidence 35789999999999999999997532111 0111 03466666655543 46
Q ss_pred EEEEEeCCCc----------cchHhHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEE
Q psy13961 86 YVTIIDAPGH----------RDFIKNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 86 ~~~liDtpG~----------~~~~~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivvi 152 (459)
.+.++|.||. .++.+.+..++ ..-=-+.|++|++.+.. +.....+..+...++| +.+|+
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~-------~~D~~~i~~~ge~~VP-~t~vf 255 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQ-------PTDNPEIAWLGENNVP-MTSVF 255 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCC-------CCChHHHHHHhhcCCC-eEEee
Confidence 8899999992 24444444444 23445678899986643 2677888999999999 78889
Q ss_pred EccCCCCCCC--cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 153 NKMDSTEPPY--SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 153 NK~D~~~~~~--~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
||||....-. .+.-...++..+..+.. ++-.-..|++.+|+.++.|..+
T Consensus 256 TK~DK~k~~~~~~kKp~~~i~~~f~~l~~--~~f~~~~Pw~~~Ssvt~~Grd~ 306 (320)
T KOG2486|consen 256 TKCDKQKKVKRTGKKPGLNIKINFQGLIR--GVFLVDLPWIYVSSVTSLGRDL 306 (320)
T ss_pred ehhhhhhhccccccCccccceeehhhccc--cceeccCCceeeecccccCcee
Confidence 9999864100 00000111111111111 1112235677899998888744
No 343
>KOG3883|consensus
Probab=98.61 E-value=6.1e-07 Score=74.92 Aligned_cols=115 Identities=23% Similarity=0.177 Sum_probs=74.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEe-eeeEEeeC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI-ALWKFETS- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~- 83 (459)
+..+|+++|.-++|||.++++|++..-.+... + --|++- -...++++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e----------------------~---------~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE----------------------L---------HPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc----------------------c---------ccchhhheeEeeecCC
Confidence 45689999999999999999999754333211 0 012211 11223332
Q ss_pred --CEEEEEEeCCCccchHhHHH-HhhcccCEEEEEEECCCCceeccccCCCchHHHHH----HHH-HcCCceEEEEEEcc
Q psy13961 84 --KFYVTIIDAPGHRDFIKNMI-TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL----LAF-TLGVKQLIVGVNKM 155 (459)
Q Consensus 84 --~~~~~liDtpG~~~~~~~~~-~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~----~~~-~~~ip~iivviNK~ 155 (459)
...+.|.||.|..++-.+.- .+++.+|+.+||.|..+.. +| |-.+.+. ..+ ...+| ++|..||.
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf----~rv~llKk~Idk~KdKKEvp-iVVLaN~r 128 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SF----QRVELLKKEIDKHKDKKEVP-IVVLANKR 128 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HH----HHHHHHHHHHhhcccccccc-EEEEechh
Confidence 35789999999999854544 4567899999999987652 22 2222221 111 13477 88888999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|+.+
T Consensus 129 dr~~ 132 (198)
T KOG3883|consen 129 DRAE 132 (198)
T ss_pred hccc
Confidence 9975
No 344
>PTZ00258 GTP-binding protein; Provisional
Probab=98.60 E-value=1.4e-07 Score=93.62 Aligned_cols=83 Identities=19% Similarity=0.140 Sum_probs=54.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
...+|+++|.+|+|||||+++|+.....+. ...+.|++.....+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~-------------------------------n~pftTi~p~~g~v~~~d~ 68 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAE-------------------------------NFPFCTIDPNTARVNVPDE 68 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCccccc-------------------------------CCCCCcccceEEEEecccc
Confidence 456899999999999999999964221110 00133444333333222
Q ss_pred ---------------CEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECC
Q psy13961 84 ---------------KFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAG 119 (459)
Q Consensus 84 ---------------~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~ 119 (459)
..++.|+||||..+ .....+..++.+|++++|||+.
T Consensus 69 r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 69 RFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999642 3334566678999999999985
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.58 E-value=4.3e-07 Score=84.88 Aligned_cols=100 Identities=19% Similarity=0.338 Sum_probs=56.8
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
+..++.+.||.|-|--.---. -...+|..++|.=..-|. .+ | ....-.+.+-. |+||||+|+.+.
T Consensus 140 dAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD---~~----Q----~iK~GimEiaD-i~vINKaD~~~A 204 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGD---DL----Q----GIKAGIMEIAD-IIVINKADRKGA 204 (323)
T ss_pred HhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCc---HH----H----HHHhhhhhhhh-eeeEeccChhhH
Confidence 335688999999985332111 134579988887665441 11 2 22222345554 566899997542
Q ss_pred CCcHHHHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+..+.++...+... ....++ ..+++-+||.+|+|+
T Consensus 205 ---~~a~r~l~~al~~~~~~~~~~~W---~ppv~~t~A~~g~Gi 242 (323)
T COG1703 205 ---EKAARELRSALDLLREVWRENGW---RPPVVTTSALEGEGI 242 (323)
T ss_pred ---HHHHHHHHHHHHhhcccccccCC---CCceeEeeeccCCCH
Confidence 23333333333322 122233 347899999999998
No 346
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.57 E-value=7.6e-07 Score=92.01 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=68.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.+|+|||||+|.|+....... .. ...+ |...........+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~v-------------------------ss----~~~~-TTr~~ei~~~idG~~ 167 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFST-------------------------DA----FGMG-TTSVQEIEGLVQGVK 167 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccc-------------------------cC----CCCC-ceEEEEEEEEECCce
Confidence 46899999999999999999974321110 00 0112 222223334456789
Q ss_pred EEEEeCCCccch------HhHHHH----hhc--ccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcC---CceEEE
Q psy13961 87 VTIIDAPGHRDF------IKNMIT----GTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLG---VKQLIV 150 (459)
Q Consensus 87 ~~liDtpG~~~~------~~~~~~----~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~---ip~iiv 150 (459)
+.+|||||..+. ...++. .+. .+|++|+|...+..... ......+..+ ..+| ..++||
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D------~eD~~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRD------SNDLPLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcccc------HHHHHHHHHHHHHhCHHhHcCEEE
Confidence 999999998753 122222 223 48998888876422110 0111222222 1233 466899
Q ss_pred EEEccCCCCC
Q psy13961 151 GVNKMDSTEP 160 (459)
Q Consensus 151 viNK~D~~~~ 160 (459)
++|..|...+
T Consensus 242 VFThgD~lpp 251 (763)
T TIGR00993 242 TLTHAASAPP 251 (763)
T ss_pred EEeCCccCCC
Confidence 9999999864
No 347
>KOG0393|consensus
Probab=98.57 E-value=2.2e-07 Score=82.66 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=89.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEEe---
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKFE--- 81 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~--- 81 (459)
..++++++|...+|||.|+-.+.. + ..+++. -.|+--++ ..+.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~--~-----------------------------~fp~~y--vPTVFdnys~~v~V~d 49 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT--N-----------------------------AFPEEY--VPTVFDNYSANVTVDD 49 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc--C-----------------------------cCcccc--cCeEEccceEEEEecC
Confidence 457899999999999999877642 1 111111 11221111 1122
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH--HcCCceEEEEEEccCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF--TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~--~~~ip~iivviNK~D~~~ 159 (459)
.....+.||||+|+++|-+-....+..+|.+|++.+.... ..++. -...++-..+ .-++| +|+|.+|.|+.+
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p---~S~~n--v~~kW~pEi~~~cp~vp-iiLVGtk~DLr~ 123 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSP---ESFEN--VKSKWIPEIKHHCPNVP-IILVGTKADLRD 123 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCCh---hhHHH--HHhhhhHHHHhhCCCCC-EEEEeehHHhhh
Confidence 2335689999999999977554567889999998887654 22211 1111222222 24788 899999999974
Q ss_pred CCCcHHHHHHHH---------HHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIK---------KEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+ ....+++. ++...+.+++|. ..++.+||++..|+
T Consensus 124 d---~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v 167 (198)
T KOG0393|consen 124 D---PSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGV 167 (198)
T ss_pred C---HHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCc
Confidence 2 11111111 122233344443 56899999999987
No 348
>KOG1707|consensus
Probab=98.57 E-value=1.9e-07 Score=93.93 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=78.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhc--CCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~--~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
.++.+||+++|.-|+|||+|+-.|+.+. ..+.++ + --++|- ..+.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r----------------------l--------~~i~IP---advt 52 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR----------------------L--------PRILIP---ADVT 52 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccccc----------------------C--------CccccC---CccC
Confidence 4578999999999999999999998542 111110 0 112332 1122
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEccC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKMD 156 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~D 156 (459)
.+.....|+||+..++-.......++.||++++|.+.++...-.+ -+..++=+.++ .++| +|+|.||.|
T Consensus 53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~-----ist~WLPlir~~~~~~~~~P-VILvGNK~d 126 (625)
T KOG1707|consen 53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDR-----ISTKWLPLIRQLFGDYHETP-VILVGNKSD 126 (625)
T ss_pred cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhh-----hhhhhhhhhhcccCCCccCC-EEEEeeccC
Confidence 234458899999777766666788999999999999886522211 22233444554 3588 999999999
Q ss_pred CCCC
Q psy13961 157 STEP 160 (459)
Q Consensus 157 ~~~~ 160 (459)
....
T Consensus 127 ~~~~ 130 (625)
T KOG1707|consen 127 NGDN 130 (625)
T ss_pred Cccc
Confidence 9863
No 349
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.57 E-value=1.3e-07 Score=89.71 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=51.5
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-----
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK----- 84 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~----- 84 (459)
|+++|.+|+|||||+++|+.....+. ...+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~-------------------------------n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAA-------------------------------NYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccc-------------------------------cccccchhceeeeEEeccchhhh
Confidence 58999999999999999974322110 001233333322222221
Q ss_pred ------------EEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 85 ------------FYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 85 ------------~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
..+.|+|+||..+ .....+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2589999999642 23345566789999999999853
No 350
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.55 E-value=2.2e-07 Score=91.06 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=53.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC----
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS---- 83 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---- 83 (459)
++|+++|.+|+|||||+++|+.....+. ...+.|++.....+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~-------------------------------nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAA-------------------------------NYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeec-------------------------------ccccccccceEEEEEeccccc
Confidence 6899999999999999999974321110 00133333332222211
Q ss_pred -------------CEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 84 -------------KFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 84 -------------~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
...+.|+|+||..+ .....+..++.+|++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 13689999999642 23345666789999999999953
No 351
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.54 E-value=2.2e-06 Score=82.01 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=77.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..||.|+|..|.|||||++.|+......... ..+.......+..++.......+.+ .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~---------------------~~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS---------------------SIPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc---------------------cccccccccccccceeeEEEEeccCCcc
Confidence 5799999999999999999997532111100 0000011122233343333333322 3
Q ss_pred EEEEEEeCCCccch-------------HhHHHH-h-----------h--cccCEEEEEEECCCCceeccccCCCchHHHH
Q psy13961 85 FYVTIIDAPGHRDF-------------IKNMIT-G-----------T--SQADCAVLIVAAGTGEFEAGISKNGQTREHA 137 (459)
Q Consensus 85 ~~~~liDtpG~~~~-------------~~~~~~-~-----------~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~ 137 (459)
..++++||||+.+. +..-.. . . ...|+++++|+++.. + -....+
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~----~-----L~~~Di 133 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH----G-----LKPLDI 133 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS----S-----S-HHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc----c-----chHHHH
Confidence 58999999996532 111000 0 1 247999999998632 1 122233
Q ss_pred HHHHHc--CCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 138 LLAFTL--GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 138 ~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
..++.+ .++ +|-||.|.|... .+.+...++.+..-++..++
T Consensus 134 ~~mk~Ls~~vN-vIPvIaKaD~lt----~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 134 EFMKRLSKRVN-VIPVIAKADTLT----PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHHHTTTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhccccc-EEeEEecccccC----HHHHHHHHHHHHHHHHHcCc
Confidence 333333 345 899999999976 46667778888877776655
No 352
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.48 E-value=1.7e-06 Score=68.43 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=57.1
Q ss_pred EeEEEEEeC-CceeEEEEEEEeeeEecCCeEEEec---------CCeEEEEEEEEec----cccceeEcCCCeEEEEEcc
Q psy13961 249 PLQDVYKIG-GIGTVPVGRVETGVIKPGMLVTFAP---------ANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 249 ~i~~v~~~~-~~G~v~~G~v~sG~l~~gd~v~~~p---------~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~ 314 (459)
.|..+...+ +.|++.++||++|+|+.||.+++.. ...+.+|.++... ..++++|.|||+|++. +
T Consensus 4 ~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g 81 (93)
T cd03700 4 YVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV--G 81 (93)
T ss_pred EEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--C
Confidence 445555556 7899999999999999999998765 2345677777653 4788999999999875 4
Q ss_pred CcccCcceeEEEc
Q psy13961 315 VSVKELRRGFVAG 327 (459)
Q Consensus 315 ~~~~~i~~G~vl~ 327 (459)
..+++.|++.+
T Consensus 82 --~~~~~~g~~~~ 92 (93)
T cd03700 82 --LDQLKSGTTAT 92 (93)
T ss_pred --CccCceEeEec
Confidence 35577888754
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.46 E-value=8.5e-07 Score=77.45 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=58.4
Q ss_pred HhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 104 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 104 ~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
..+..+|++++|+|++.+... +..+....+...+.| +++|+||+|+.+. ..... ...+.+..
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~-------~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~----~~~~~----~~~~~~~~-- 69 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELT-------RSRKLERYVLELGKK-LLIVLNKADLVPK----EVLEK----WKSIKESE-- 69 (156)
T ss_pred HHHhhCCEEEEEeeCCCCccc-------CCHHHHHHHHhCCCc-EEEEEEhHHhCCH----HHHHH----HHHHHHhC--
Confidence 334569999999999765332 334444445556888 7888999999751 11111 11122221
Q ss_pred CCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 184 ~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
..+++++||+++.|+ +.|++.|.+.+|
T Consensus 70 ---~~~~~~iSa~~~~gi------------------------~~L~~~l~~~~~ 96 (156)
T cd01859 70 ---GIPVVYVSAKERLGT------------------------KILRRTIKELAK 96 (156)
T ss_pred ---CCcEEEEEccccccH------------------------HHHHHHHHHHHh
Confidence 246899999999998 778888877665
No 354
>KOG1673|consensus
Probab=98.44 E-value=1.8e-06 Score=72.35 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=100.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
-.++|+++|.+..|||||+-...... . | .+-+...|+-.--...++...+-
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~---~-------------------------d-e~~~q~~GvN~mdkt~~i~~t~I 69 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNE---Y-------------------------D-EEYTQTLGVNFMDKTVSIRGTDI 69 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcch---h-------------------------H-HHHHHHhCccceeeEEEecceEE
Confidence 36799999999999999987765321 0 0 00111122221111222333345
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC---CceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG---VKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~---ip~iivviNK~D~~~~~~ 162 (459)
.+.+||..|+++|..+.--+...+-+++++.|-+.... +. ..+++.++++..+ +| |++.+|-|+.-. .
T Consensus 70 sfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T---Ln---Si~~WY~QAr~~NktAiP--ilvGTKyD~fi~-l 140 (205)
T KOG1673|consen 70 SFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST---LN---SIKEWYRQARGLNKTAIP--ILVGTKYDLFID-L 140 (205)
T ss_pred EEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH---HH---HHHHHHHHHhccCCccce--EEeccchHhhhc-C
Confidence 78899999999998887777788899999999986521 21 4566777887765 56 566899886410 2
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
..+.-+.+..+.+.+.+.+ +.+.++.|+-+..|+.
T Consensus 141 p~e~Q~~I~~qar~YAk~m-----nAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 141 PPELQETISRQARKYAKVM-----NASLFFCSTSHSINVQ 175 (205)
T ss_pred CHHHHHHHHHHHHHHHHHh-----CCcEEEeeccccccHH
Confidence 2234455566666666554 3568899999999983
No 355
>KOG0448|consensus
Probab=98.42 E-value=1.2e-06 Score=89.83 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=48.6
Q ss_pred EEEEEeCCCcc---chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 86 YVTIIDAPGHR---DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 86 ~~~liDtpG~~---~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.++|.||.. .+........-.+|+.|||+.|....+ ++..++...-..+.|+++|+.||+|...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhhc
Confidence 68999999963 344445555668999999999965421 5555665555566999999999999875
No 356
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.32 E-value=3.4e-06 Score=72.33 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=53.2
Q ss_pred hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhh
Q psy13961 100 KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY 177 (459)
Q Consensus 100 ~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~ 177 (459)
+.....+..+|++++|+|++.+... +..+....+... +.| +++|+||+|+.+. ... .+..+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~-------~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~----~~~----~~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLF-------RPPDLERYVKEVDPRKK-NILLLNKADLLTE----EQR----KAWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCccc-------CCHHHHHHHHhccCCCc-EEEEEechhcCCH----HHH----HHHHHH
Confidence 4566778899999999999876332 444444555444 788 7888999999752 221 223333
Q ss_pred hhhcCcCCceeeEeecCCCCCCc
Q psy13961 178 IKKIGYNPATVAFVPISGWHGDN 200 (459)
Q Consensus 178 l~~~g~~~~~~~~i~iSa~~g~~ 200 (459)
++..+ .+++++||.++.+
T Consensus 67 ~~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HHhcC-----CeEEEEEecCCCc
Confidence 43333 3589999999875
No 357
>KOG0096|consensus
Probab=98.29 E-value=2.1e-06 Score=74.54 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=94.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE----e
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF----E 81 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~----~ 81 (459)
+..+++++|..+.||||++.+.+.. . | |+..-.|+.+..... .
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltg--e--------------------F-----------e~~y~at~Gv~~~pl~f~tn 55 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTG--E--------------------F-----------EKTYPATLGVEVHPLLFDTN 55 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcc--c--------------------c-----------eecccCcceeEEeeeeeecc
Confidence 4678999999999999999998631 1 1 111222333332221 1
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~~ 160 (459)
....++..|||.|++.|......+.-++-+||++.|........ ...+.|-.+++ ..++| |+++.||.|....
T Consensus 56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~-----n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r 129 (216)
T KOG0096|consen 56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYK-----NVPRWHRDLVRVRENIP-IVLCGNKVDIKAR 129 (216)
T ss_pred cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhh-----cchHHHHHHHHHhcCCC-eeeeccceecccc
Confidence 22368999999999999887777777888999999987543221 12333444443 35689 9999999998652
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
. +..+--.+.+ ..++.++.+||+...|...
T Consensus 130 ~--------~k~k~v~~~r-----kknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 130 K--------VKAKPVSFHR-----KKNLQYYEISAKSNYNFER 159 (216)
T ss_pred c--------cccccceeee-----cccceeEEeeccccccccc
Confidence 1 1111111111 2467889999999888743
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.29 E-value=2.4e-06 Score=75.90 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCCcc-chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHH
Q psy13961 92 APGHR-DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEI 170 (459)
Q Consensus 92 tpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i 170 (459)
-|||. +.+.++...+..||.+++|+|++.+... ...+.+.. ..+.| .++++||+|+.+. ....+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~-------~~~~i~~~--~~~k~-~ilVlNK~Dl~~~----~~~~~- 66 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSS-------RNPLLEKI--LGNKP-RIIVLNKADLADP----KKTKK- 66 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCc-------CChhhHhH--hcCCC-EEEEEehhhcCCh----HHHHH-
Confidence 47774 5677788888999999999999865321 22222222 23677 6788999999752 11111
Q ss_pred HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 171 KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 171 ~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..++++..+ ..++++||+++.|+
T Consensus 67 ---~~~~~~~~~-----~~vi~iSa~~~~gi 89 (171)
T cd01856 67 ---WLKYFESKG-----EKVLFVNAKSGKGV 89 (171)
T ss_pred ---HHHHHHhcC-----CeEEEEECCCcccH
Confidence 112222211 35789999999998
No 359
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.29 E-value=1.1e-05 Score=63.98 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=48.5
Q ss_pred EEeEEEEEeCCc-eeEEEEEEEeeeEecCCeEEEecCC---------eEEEEEEEEe----ccccceeEcCCCeEEEE
Q psy13961 248 LPLQDVYKIGGI-GTVPVGRVETGVIKPGMLVTFAPAN---------LTTEVKSVEM----HHEALQEAVPGDNVGFN 311 (459)
Q Consensus 248 ~~i~~v~~~~~~-G~v~~G~v~sG~l~~gd~v~~~p~~---------~~~~V~~I~~----~~~~v~~a~aGd~v~l~ 311 (459)
..|..+...+.. |.+.++||+||+|++||.|++...+ ...+|.+|.. ...++++|.|||+|++.
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 445556555665 6789999999999999999874321 3467777765 35788999999999875
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.28 E-value=5.1e-06 Score=83.38 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCEEEEEEeCCCccchHh----HHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFIK----NMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~----~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~ 155 (459)
.++.+.||||||...... ++... ...+|-++||+||..|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 357899999999764433 33222 23588999999998661 2222333222 34454 4557999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 9864
No 361
>KOG1490|consensus
Probab=98.25 E-value=2.7e-06 Score=84.37 Aligned_cols=155 Identities=20% Similarity=0.265 Sum_probs=85.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.+++.++|.+|+|||++++.++.....+. .|++. |-.+-..++.+.-.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevq-------------------pYaFT------------TksL~vGH~dykYl 215 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-------------------PYAFT------------TKLLLVGHLDYKYL 215 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccC-------------------Ccccc------------cchhhhhhhhhhee
Confidence 457899999999999999988864321111 11110 11111223444446
Q ss_pred EEEEEeCCCccch------HhHH--HHhhc-ccCEEEEEEECCCCceeccccCCCchHH-HHHHHHHcCCceEEEEEEcc
Q psy13961 86 YVTIIDAPGHRDF------IKNM--ITGTS-QADCAVLIVAAGTGEFEAGISKNGQTRE-HALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 86 ~~~liDtpG~~~~------~~~~--~~~~~-~aD~~ilVvda~~g~~~~~~~~~~qt~e-~~~~~~~~~ip~iivviNK~ 155 (459)
.+.++||||.-|- .-+| +.++. .--+++++.|.+.. + |.....|..- |-..-.-.+.| +|+|+||+
T Consensus 216 rwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~-C--GySva~QvkLfhsIKpLFaNK~-~IlvlNK~ 291 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM-C--GYSVAAQVKLYHSIKPLFANKV-TILVLNKI 291 (620)
T ss_pred eeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh-h--CCCHHHHHHHHHHhHHHhcCCc-eEEEeecc
Confidence 7889999996432 1112 22222 23468889998642 2 1211112221 11111224667 88899999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
|...++ .+++-.+++.+.++.- .+++++..|..+.+|+..
T Consensus 292 D~m~~e----dL~~~~~~ll~~~~~~----~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 292 DAMRPE----DLDQKNQELLQTIIDD----GNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred cccCcc----ccCHHHHHHHHHHHhc----cCceEEEecccchhceee
Confidence 998642 2222233333333222 347899999999999865
No 362
>KOG1534|consensus
Probab=98.25 E-value=1.8e-06 Score=76.34 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=42.5
Q ss_pred EEEEEEeCCCccc------hHhHHHHhhccc---CEEEEEEECCCCceeccccCCCchHH------HHHHHHHcCCceEE
Q psy13961 85 FYVTIIDAPGHRD------FIKNMITGTSQA---DCAVLIVAAGTGEFEAGISKNGQTRE------HALLAFTLGVKQLI 149 (459)
Q Consensus 85 ~~~~liDtpG~~~------~~~~~~~~~~~a---D~~ilVvda~~g~~~~~~~~~~qt~e------~~~~~~~~~ip~ii 149 (459)
..+.++|+||+.+ -+++.++.+.+- =++++++|+.-- .+ .++. .+.....+.+|+ |
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~-vD-------~~KfiSG~lsAlsAMi~lE~P~-I 168 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFL-VD-------STKFISGCLSALSAMISLEVPH-I 168 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchh-hh-------HHHHHHHHHHHHHHHHHhcCcc-h
Confidence 4688999999754 366777777552 347777877421 11 1222 233444579996 6
Q ss_pred EEEEccCCCC
Q psy13961 150 VGVNKMDSTE 159 (459)
Q Consensus 150 vviNK~D~~~ 159 (459)
=+++|||+..
T Consensus 169 NvlsKMDLlk 178 (273)
T KOG1534|consen 169 NVLSKMDLLK 178 (273)
T ss_pred hhhhHHHHhh
Confidence 6689999986
No 363
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.25 E-value=1.4e-06 Score=76.20 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...+|+++|.+|+|||||+|+|+.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 457899999999999999999974
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.24 E-value=3.9e-06 Score=73.35 Aligned_cols=80 Identities=15% Similarity=-0.007 Sum_probs=49.0
Q ss_pred HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhh
Q psy13961 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179 (459)
Q Consensus 102 ~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~ 179 (459)
..+.+..+|.+++|+|++.+..+ +.......+.. .+.| +|+|+||+|+.++ +......+.+. +
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~-------~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~----~~~~~~~~~~~---~ 66 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGT-------RCKHVEEYLKKEKPHKH-LIFVLNKCDLVPT----WVTARWVKILS---K 66 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccc-------cCHHHHHHHHhccCCCC-EEEEEEchhcCCH----HHHHHHHHHHh---c
Confidence 34667889999999999865322 33333333333 3478 7888999999752 22222222221 1
Q ss_pred hcCcCCceeeEeecCCCCCCcc
Q psy13961 180 KIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 180 ~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. + ...++++||+++.|+
T Consensus 67 ~--~---~~~~~~iSa~~~~~~ 83 (157)
T cd01858 67 E--Y---PTIAFHASINNPFGK 83 (157)
T ss_pred C--C---cEEEEEeeccccccH
Confidence 1 1 123589999999888
No 365
>KOG1547|consensus
Probab=98.17 E-value=3.9e-05 Score=69.33 Aligned_cols=142 Identities=21% Similarity=0.289 Sum_probs=78.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee--eeEEeeC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKFETS 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~ 83 (459)
-..||.++|..|.|||||++.|.... + +.. + + .+. .++.. -.|+++. ...++.+
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~--v-----------~~~-s--~------~~~-~~~p~-pkT~eik~~thvieE~ 100 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSH--V-----------SDS-S--S------SDN-SAEPI-PKTTEIKSITHVIEEK 100 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHH--H-----------hhc-c--C------CCc-ccCcc-cceEEEEeeeeeeeec
Confidence 36799999999999999999996321 0 000 0 0 111 11111 1233332 2223333
Q ss_pred C--EEEEEEeCCCccch---------------------HhHHHHhh-------cccCEEEEEEECCCCceeccccCCCch
Q psy13961 84 K--FYVTIIDAPGHRDF---------------------IKNMITGT-------SQADCAVLIVAAGTGEFEAGISKNGQT 133 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~---------------------~~~~~~~~-------~~aD~~ilVvda~~g~~~~~~~~~~qt 133 (459)
+ .++++|||||+-|+ ++.-+... ...+++++.|..+-. .+ .+-.
T Consensus 101 gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh----sL--rplD 174 (336)
T KOG1547|consen 101 GVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH----SL--RPLD 174 (336)
T ss_pred ceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC----cc--Cccc
Confidence 2 47899999997543 22222221 236788999987532 12 2245
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 134 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 134 ~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
.|.+..+ -.+-.+|-||-|.|...- +...+.++.+++-+...++
T Consensus 175 ieflkrL--t~vvNvvPVIakaDtlTl----eEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 175 IEFLKRL--TEVVNVVPVIAKADTLTL----EERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHH--hhhheeeeeEeecccccH----HHHHHHHHHHHHHHHhcCc
Confidence 5555433 344447778999998752 2334556666666666555
No 366
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.17 E-value=2.3e-06 Score=75.84 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=39.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+++++|.+|+|||||+|+|+..... ......|+|.......+ +..
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~---~~~ 163 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL---DKK 163 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---CCC
Confidence 479999999999999999999742110 01122477776555443 236
Q ss_pred EEEEeCCCc
Q psy13961 87 VTIIDAPGH 95 (459)
Q Consensus 87 ~~liDtpG~ 95 (459)
+.++||||.
T Consensus 164 ~~l~DtPGi 172 (172)
T cd04178 164 VKLLDSPGI 172 (172)
T ss_pred EEEEECcCC
Confidence 889999994
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.17 E-value=9.7e-06 Score=73.26 Aligned_cols=103 Identities=15% Similarity=0.050 Sum_probs=61.2
Q ss_pred chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHh
Q psy13961 97 DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSG 176 (459)
Q Consensus 97 ~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~ 176 (459)
.|...+...+..+|++++|+|+++... ...+.+ .....+.| +++|+||+|+.+............+.+
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~-- 90 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAK-- 90 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHH--
Confidence 356667777789999999999976421 111122 22234677 788899999975321111111111000
Q ss_pred hhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 177 YIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 177 ~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
..+..++. ..+++++||++|+|+ ++|++.|...++
T Consensus 91 ~~~~~~~~--~~~i~~vSA~~~~gi------------------------~eL~~~l~~~l~ 125 (190)
T cd01855 91 AAAGLGLK--PKDVILISAKKGWGV------------------------EELINAIKKLAK 125 (190)
T ss_pred HHhhcCCC--cccEEEEECCCCCCH------------------------HHHHHHHHHHhh
Confidence 11222221 125799999999998 778888877664
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.16 E-value=3.9e-05 Score=71.17 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-e
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-T 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~ 82 (459)
..+...|+|+|+.++|||||+|+|+..... |. +.+.. ..-.+|+-+... .+. .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~--------------------f~---~~~~~-~~~T~gi~~~~~--~~~~~ 57 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSG--------------------FD---VMDTS-QQTTKGIWMWSV--PFKLG 57 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCC--------------------eE---ecCCC-CCCccceEEEec--cccCC
Confidence 456678999999999999999999743111 11 01111 111123332211 111 2
Q ss_pred CCEEEEEEeCCCccch------HhHHHHhhcc--cCEEEEEEECCC
Q psy13961 83 SKFYVTIIDAPGHRDF------IKNMITGTSQ--ADCAVLIVAAGT 120 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~------~~~~~~~~~~--aD~~ilVvda~~ 120 (459)
.+..+.++||||..+. ....+.++.. +|+.|+.++...
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 4578999999997543 2234455555 899999998764
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.16 E-value=4.4e-06 Score=80.15 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCcc-chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHH
Q psy13961 93 PGHR-DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIK 171 (459)
Q Consensus 93 pG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~ 171 (459)
|||. +..+.+...+..+|++++|+||+.+... ........+ .+.| +++|+||+|+.+. .......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~-------~~~~i~~~l--~~kp-~IiVlNK~DL~~~----~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSS-------RNPMIDEIR--GNKP-RLIVLNKADLADP----AVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCC-------CChhHHHHH--CCCC-EEEEEEccccCCH----HHHHHHH
Confidence 7885 4567777888999999999999765221 111122222 3677 7888999999752 1112211
Q ss_pred HHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 172 KEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 172 ~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+ .++..+ .+++++||.++.|+
T Consensus 71 ~----~~~~~~-----~~vi~iSa~~~~gi 91 (276)
T TIGR03596 71 K----YFEEKG-----IKALAINAKKGKGV 91 (276)
T ss_pred H----HHHHcC-----CeEEEEECCCcccH
Confidence 1 222222 35789999999888
No 370
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.15 E-value=2.5e-05 Score=79.65 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=43.3
Q ss_pred cCCceEEEEEEccCCCC-----CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 143 LGVKQLIVGVNKMDSTE-----PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 143 ~~ip~iivviNK~D~~~-----~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+| ++||++|.|... .+|.++.|+.+...|+.++-.+|. .+|.+|.+...|+
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~ 252 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNL 252 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccH
Confidence 4788 899999999742 348889999999999999887775 4788898888777
No 371
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.14 E-value=6e-05 Score=72.70 Aligned_cols=144 Identities=22% Similarity=0.323 Sum_probs=84.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhH-HhcCceEEeeeeEEeeCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE-RERGITIDIALWKFETSK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~ 84 (459)
-..+|.++|..|.||||++|.|+... ..+. . -.+....+ ...++.+......++-++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~-l~~~--------------~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTS-LVDE--------------T-------EIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhh-ccCC--------------C-------CccCcccccCCcceEEEeeeeeeecCC
Confidence 46799999999999999999998541 0000 0 01111111 223333443333333333
Q ss_pred --EEEEEEeCCCccchHhH-------------HHH-h------------h--cccCEEEEEEECCCCceeccccCCCchH
Q psy13961 85 --FYVTIIDAPGHRDFIKN-------------MIT-G------------T--SQADCAVLIVAAGTGEFEAGISKNGQTR 134 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~-------------~~~-~------------~--~~aD~~ilVvda~~g~~~~~~~~~~qt~ 134 (459)
..+++|||||.-+++.+ ... + + ...+++++.+..+. .++. +...
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg----h~l~--~~DI 153 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG----HGLK--PLDI 153 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC----CCCC--HHHH
Confidence 57899999998665332 111 1 1 23689999997642 2221 1333
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 135 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 135 e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
+.+..+ -..-.+|-||-|.|... ...+...++.+.+.+....+
T Consensus 154 e~Mk~l--s~~vNlIPVI~KaD~lT----~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 154 EAMKRL--SKRVNLIPVIAKADTLT----DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHH--hcccCeeeeeeccccCC----HHHHHHHHHHHHHHHHHhCC
Confidence 333322 23333888999999975 36667778888887776554
No 372
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4.7e-05 Score=73.87 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=53.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-----e---
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-----W--- 78 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-----~--- 78 (459)
.++++++|-||+|||||+++|+.....+. .+.+.+ -|.+.|+..-... .
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~a-----------------NYPF~T------IePN~Giv~v~d~rl~~L~~~~ 58 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIA-----------------NYPFCT------IEPNVGVVYVPDCRLDELAEIV 58 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcccc-----------------CCCccc------ccCCeeEEecCchHHHHHHHhc
Confidence 36899999999999999999975331111 111111 1111121110000 0
Q ss_pred --EEeeCCEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 79 --KFETSKFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 79 --~~~~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
+-..-.-.+.|+|.+|.-. .-...+.-++.+|+++.|||+..
T Consensus 59 ~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 59 KCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0001123678999999632 33445566889999999999974
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.09 E-value=2.3e-06 Score=74.20 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|+.|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999753
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.09 E-value=9.6e-06 Score=76.29 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=52.2
Q ss_pred HhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 104 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 104 ~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
..++.+|.+++|+|+.+..+ .+. ....++..+...++| +++|+||+|+.+. .. +..+....++..+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~~---~l~r~l~~~~~~~i~-~vIV~NK~DL~~~----~~---~~~~~~~~~~~~g- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SLN---QLDRFLVVAEAQNIE-PIIVLNKIDLLDD----ED---MEKEQLDIYRNIG- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CHH---HHHHHHHHHHHCCCC-EEEEEECcccCCC----HH---HHHHHHHHHHHCC-
Confidence 35788999999999986531 121 344455556667888 7888999999752 11 1111222233333
Q ss_pred CCceeeEeecCCCCCCcc
Q psy13961 184 NPATVAFVPISGWHGDNM 201 (459)
Q Consensus 184 ~~~~~~~i~iSa~~g~~i 201 (459)
.+++.+||++|+|+
T Consensus 98 ----~~v~~~SAktg~gi 111 (245)
T TIGR00157 98 ----YQVLMTSSKNQDGL 111 (245)
T ss_pred ----CeEEEEecCCchhH
Confidence 46899999999998
No 375
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=8.4e-06 Score=73.86 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=42.2
Q ss_pred CCEEEEEEeCCCccchHhHHHHh------hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITG------TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~------~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
+++.+.||||||...+....... ....+-++||+||+.+. + ............++.. ++ +||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~-------~~~~~~~~~~~~~~~~-lI-lTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-E-------DLEQALAFYEAFGIDG-LI-LTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-H-------HHHHHHHHHHHSSTCE-EE-EESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-H-------HHHHHHHHhhcccCce-EE-EEeec
Confidence 44679999999976553332221 22578999999998651 1 2333344445567885 33 69999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 152 et~ 154 (196)
T PF00448_consen 152 ETA 154 (196)
T ss_dssp SSS
T ss_pred CCC
Confidence 875
No 376
>KOG3905|consensus
Probab=98.08 E-value=9e-05 Score=69.86 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=45.7
Q ss_pred HcCCceEEEEEEccCCC-----CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 142 TLGVKQLIVGVNKMDST-----EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 142 ~~~ip~iivviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+|+| ++||++|+|.+ +.+|..+.|+.+...+++|.-++|. ..|.+|++...|+
T Consensus 220 NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNi 278 (473)
T KOG3905|consen 220 NLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNI 278 (473)
T ss_pred cCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccch
Confidence 36889 88999999984 3457788999999999999988875 5789999999888
No 377
>KOG1486|consensus
Probab=98.07 E-value=1e-05 Score=73.42 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=57.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
+-+|+++|-+.+|||||+..++.-... ..++.+ .|...--.-+++++..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~Se-----------------aA~yeF--------------TTLtcIpGvi~y~ga~ 110 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSE-----------------AASYEF--------------TTLTCIPGVIHYNGAN 110 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhh-----------------hhceee--------------eEEEeecceEEecCce
Confidence 579999999999999999998521100 001111 1222223346778899
Q ss_pred EEEEeCCCccch-------HhHHHHhhcccCEEEEEEECCCC
Q psy13961 87 VTIIDAPGHRDF-------IKNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 87 ~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g 121 (459)
+.++|.||...- -+..++.++.||.+++|.||+..
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 999999997532 23455567789999999999876
No 378
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.03 E-value=2.3e-05 Score=68.36 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=44.4
Q ss_pred CEEEEEEECCCCceeccccCCCchHHHH-HHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCcee
Q psy13961 110 DCAVLIVAAGTGEFEAGISKNGQTREHA-LLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATV 188 (459)
Q Consensus 110 D~~ilVvda~~g~~~~~~~~~~qt~e~~-~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~ 188 (459)
|.+++|+|++.+... ...... ..+...++| +|+|+||+|+.+. +... +.+..+ .... ..
T Consensus 1 Dvvl~VvD~~~p~~~-------~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~----~~~~---~~~~~~-~~~~----~~ 60 (155)
T cd01849 1 DVILEVLDARDPLGT-------RSPDIERVLIKEKGKK-LILVLNKADLVPK----EVLR---KWLAYL-RHSY----PT 60 (155)
T ss_pred CEEEEEEeccCCccc-------cCHHHHHHHHhcCCCC-EEEEEechhcCCH----HHHH---HHHHHH-HhhC----Cc
Confidence 789999999765321 222222 345567888 7888999999752 2111 212112 1111 23
Q ss_pred eEeecCCCCCCcc
Q psy13961 189 AFVPISGWHGDNM 201 (459)
Q Consensus 189 ~~i~iSa~~g~~i 201 (459)
.++++||.+|.|+
T Consensus 61 ~ii~vSa~~~~gi 73 (155)
T cd01849 61 IPFKISATNGQGI 73 (155)
T ss_pred eEEEEeccCCcCh
Confidence 5799999999998
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.03 E-value=6.5e-06 Score=71.80 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...+++++|.+|+|||||+|.|+.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=2.8e-05 Score=75.78 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...|+++|+.|+||||++..|...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568899999999999999999653
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=3.9e-05 Score=73.22 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=41.1
Q ss_pred CCEEEEEEeCCCccchHhHHH-------Hhhc-----ccCEEEEEEECCCCceeccccCCCchHHHHH-HHHHcCCceEE
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMI-------TGTS-----QADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFTLGVKQLI 149 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~-------~~~~-----~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~~~ip~ii 149 (459)
.++.+.||||||....-.... +... .+|..+||+|+..+. ....... ..+..++- -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 457899999999765433322 1111 389999999997551 2223332 23345655 3
Q ss_pred EEEEccCCCC
Q psy13961 150 VGVNKMDSTE 159 (459)
Q Consensus 150 vviNK~D~~~ 159 (459)
+++||+|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 4469999864
No 382
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=2.5e-05 Score=76.98 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=42.6
Q ss_pred CEEEEEEeCCCccch----HhHHHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 84 KFYVTIIDAPGHRDF----IKNMITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~~~~~liDtpG~~~~----~~~~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
++.+.||||||.... +..+...+ ..+|..+||+||+.+. ....+.+......++.. +| +||+|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg-lI-~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG-IV-FTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE-EE-EEcccC
Confidence 468999999997543 33333333 3478899999986431 13345555555677775 33 599998
Q ss_pred CC
Q psy13961 158 TE 159 (459)
Q Consensus 158 ~~ 159 (459)
..
T Consensus 390 T~ 391 (436)
T PRK11889 390 TA 391 (436)
T ss_pred CC
Confidence 74
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=98.02 E-value=2.1e-05 Score=77.55 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=51.9
Q ss_pred hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcC
Q psy13961 105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184 (459)
Q Consensus 105 ~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 184 (459)
.+..+|.+++|+|+.+..+. . .+..+.+..+...++| +++|+||+|+++. .... .....++..|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~--~---~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~----~~~~----~~~~~~~~~g~- 150 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD--P---WQLSRFLVKAESTGLE-IVLCLNKADLVSP----TEQQ----QWQDRLQQWGY- 150 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC--H---HHHHHHHHHHHHCCCC-EEEEEEchhcCCh----HHHH----HHHHHHHhcCC-
Confidence 36789999999999754322 0 1234455556667899 7888999999852 2222 22223344454
Q ss_pred CceeeEeecCCCCCCcc
Q psy13961 185 PATVAFVPISGWHGDNM 201 (459)
Q Consensus 185 ~~~~~~i~iSa~~g~~i 201 (459)
+++++||.++.|+
T Consensus 151 ----~v~~iSA~tg~GI 163 (352)
T PRK12289 151 ----QPLFISVETGIGL 163 (352)
T ss_pred ----eEEEEEcCCCCCH
Confidence 5799999999998
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.01 E-value=8.6e-05 Score=65.94 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=40.6
Q ss_pred CCEEEEEEeCCCccchHhHHHHh------hcccCEEEEEEECCCCceeccccCCCchHHH-HHHHHHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITG------TSQADCAVLIVAAGTGEFEAGISKNGQTREH-ALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~------~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~-~~~~~~~~ip~iivviNK~ 155 (459)
.++.+.|+||||...+....+.. ....|.+++|+|+..+. ...+. ..+.+..++- -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 45678999999986432222222 13489999999996431 22232 3333455654 4556999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9875
No 385
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.00 E-value=1.5e-05 Score=76.97 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCccc-hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHH
Q psy13961 92 APGHRD-FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEI 170 (459)
Q Consensus 92 tpG~~~-~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i 170 (459)
-|||.. -.+++...+..+|++|+|+|++.+... ...+..... .+.| +++|+||+|+.+. ...+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~-------~~~~l~~~~--~~kp-~iiVlNK~DL~~~----~~~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSS-------ENPMIDKII--GNKP-RLLILNKSDLADP----EVTKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCC-------CChhHHHHh--CCCC-EEEEEEchhcCCH----HHHHHH
Confidence 478853 456667778899999999999765221 222222222 2677 7888999999751 111222
Q ss_pred HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 171 KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 171 ~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..+++..+ .+++++|+.++.|+
T Consensus 73 ----~~~~~~~~-----~~vi~vSa~~~~gi 94 (287)
T PRK09563 73 ----IEYFEEQG-----IKALAINAKKGQGV 94 (287)
T ss_pred ----HHHHHHcC-----CeEEEEECCCcccH
Confidence 22222222 35789999999887
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.1e-05 Score=75.10 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999743
No 387
>KOG1954|consensus
Probab=97.97 E-value=8.4e-05 Score=71.24 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=84.5
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCC--cceeeeeccCchhHHhcCceEEeee-eEEe----
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG--SFKYAWVLDKLKAERERGITIDIAL-WKFE---- 81 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~---- 81 (459)
-|.++|.-..||||+++.|+...=. . ...|-+ .-++..+|.-..++.-.|-+.-..- .+|.
T Consensus 60 mill~GqyStGKTtfi~yLle~dyp-g-----------~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~ 127 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYP-G-----------LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK 127 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCC-c-----------cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh
Confidence 4789999999999999999854200 0 012322 2345556666665555565553321 1111
Q ss_pred -------------eC---CEEEEEEeCCCcc-----------chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH
Q psy13961 82 -------------TS---KFYVTIIDAPGHR-----------DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 134 (459)
Q Consensus 82 -------------~~---~~~~~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~ 134 (459)
.. -.+++|+||||.- +|..-..=-+..+|.++|+.|+..-.. ...+.
T Consensus 128 FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI------sdEf~ 201 (532)
T KOG1954|consen 128 FGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI------SDEFK 201 (532)
T ss_pred hHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc------cHHHH
Confidence 01 1479999999963 333333333567999999999975321 12677
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 135 EHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 135 e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
+.+..++...-+ +=||+||.|.++
T Consensus 202 ~vi~aLkG~Edk-iRVVLNKADqVd 225 (532)
T KOG1954|consen 202 RVIDALKGHEDK-IRVVLNKADQVD 225 (532)
T ss_pred HHHHHhhCCcce-eEEEeccccccC
Confidence 888888777776 778899999997
No 388
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=9.5e-06 Score=73.33 Aligned_cols=63 Identities=29% Similarity=0.341 Sum_probs=39.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+++++|.+|+|||||+|+|+.......+ . ..........|.|.+.....+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~-------------~---------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKK-------------L---------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccc-------------c---------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 57999999999999999999853211000 0 00001112347777766555532 57
Q ss_pred EEEeCCCc
Q psy13961 88 TIIDAPGH 95 (459)
Q Consensus 88 ~liDtpG~ 95 (459)
.|+||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.91 E-value=1.2e-05 Score=69.03 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999973
No 390
>PRK14974 cell division protein FtsY; Provisional
Probab=97.91 E-value=7e-05 Score=73.29 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCEEEEEEeCCCccch----HhHHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~ip~iivviNK~ 155 (459)
.++.+.||||||.... +.++..- ...+|..+||+|+..|. ...+.+... ...++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC--EEEEeee
Confidence 3467999999997643 3332211 23589999999997651 233333322 346776 3446999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 290 D~~~ 293 (336)
T PRK14974 290 DADA 293 (336)
T ss_pred cCCC
Confidence 9864
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.90 E-value=7.4e-05 Score=65.35 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-++++|..|||||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999999865
No 392
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.88 E-value=1.9e-05 Score=68.16 Aligned_cols=59 Identities=32% Similarity=0.432 Sum_probs=37.1
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
.++.+.||||||... .....+..||.+++|+....+ .. ..+.....+..-. ++++||+|
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~----------D~-y~~~k~~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAG----------DD-IQAIKAGIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCch----------hH-HHHhhhhHhhhcC-EEEEeCCC
Confidence 367899999999653 334567789999999876532 11 1122222233443 56689998
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=5e-05 Score=73.65 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=50.8
Q ss_pred hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC
Q psy13961 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP 185 (459)
Q Consensus 106 ~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 185 (459)
+..+|.+++|+|+.+..+.. ....+.+..+...++| +++|+||+|+.+. ..... .....++..++
T Consensus 78 aaniD~vllV~d~~~p~~~~-----~~idr~L~~~~~~~ip-~iIVlNK~DL~~~---~~~~~----~~~~~~~~~g~-- 142 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFST-----DLLDRFLVLAEANGIK-PIIVLNKIDLLDD---LEEAR----ELLALYRAIGY-- 142 (298)
T ss_pred eecCCEEEEEEECCCCCCCH-----HHHHHHHHHHHHCCCC-EEEEEEhHHcCCC---HHHHH----HHHHHHHHCCC--
Confidence 57899999999997542210 0223445556678899 7888999999741 12111 22223333443
Q ss_pred ceeeEeecCCCCCCccc
Q psy13961 186 ATVAFVPISGWHGDNML 202 (459)
Q Consensus 186 ~~~~~i~iSa~~g~~i~ 202 (459)
+++++||.+++|+.
T Consensus 143 ---~v~~vSA~~g~gi~ 156 (298)
T PRK00098 143 ---DVLELSAKEGEGLD 156 (298)
T ss_pred ---eEEEEeCCCCccHH
Confidence 68999999999983
No 394
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.87 E-value=2.4e-05 Score=70.89 Aligned_cols=66 Identities=26% Similarity=0.436 Sum_probs=49.5
Q ss_pred CCEEEEEEeC-CCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 83 SKFYVTIIDA-PGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 83 ~~~~~~liDt-pG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
+.+.+.++|| +|.+.|-+-+. ..+|.+|.|+|.+..... ..++.-.++..+++.++.+|+||.|-.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~sl~-------taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKSLR-------TAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHHHH-------HHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4578999999 47777765443 468999999999854222 455566788889988899999999953
No 395
>KOG2655|consensus
Probab=97.87 E-value=0.00016 Score=70.40 Aligned_cols=143 Identities=20% Similarity=0.318 Sum_probs=81.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC--
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-- 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-- 84 (459)
..++.++|..|.|||||+|.|+... +. +... ....+.......++......++-++
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~--l~--------------~~~~------~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTD--LS--------------GNRE------VPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhh--cc--------------CCcc------cCCcccCccccceeeeeeeeecCCCeE
Confidence 5789999999999999999997431 10 0000 0111111222333333333333332
Q ss_pred EEEEEEeCCCccchHhH-------------HH-H-----------hhc--ccCEEEEEEECCCCceeccccCCCchHHHH
Q psy13961 85 FYVTIIDAPGHRDFIKN-------------MI-T-----------GTS--QADCAVLIVAAGTGEFEAGISKNGQTREHA 137 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~-------------~~-~-----------~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~ 137 (459)
..++++||||..|++.+ .. . ... ..+++++.|.... .|+. +...+.+
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g----hgL~--p~Di~~M 152 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG----HGLK--PLDIEFM 152 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC----CCCc--HhhHHHH
Confidence 57899999998654222 10 0 112 4789999998642 2232 1333333
Q ss_pred HHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 138 LLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 138 ~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
..+ ...+. +|-||-|.|...+ ......++.+.+.+....+
T Consensus 153 k~l-~~~vN-iIPVI~KaD~lT~----~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 153 KKL-SKKVN-LIPVIAKADTLTK----DELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHH-hcccc-ccceeeccccCCH----HHHHHHHHHHHHHHHHcCc
Confidence 322 23555 8888999999763 5556666777666665443
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.86 E-value=0.00014 Score=73.76 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=39.8
Q ss_pred EEEEEEeCCCccchHhHH------HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCC
Q psy13961 85 FYVTIIDAPGHRDFIKNM------ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~------~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~ 157 (459)
+.+.||||||...+...+ +..+..+|.++||+|+..+. +..+.+.... .+++- -+++||+|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---------~av~~a~~F~~~l~i~--gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---------QAKNQAKAFHEAVGIG--GIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---------HHHHHHHHHHhcCCCC--EEEEecccC
Confidence 478999999976553332 23345689999999997651 2222322222 23443 455799997
Q ss_pred CC
Q psy13961 158 TE 159 (459)
Q Consensus 158 ~~ 159 (459)
..
T Consensus 245 ~a 246 (437)
T PRK00771 245 TA 246 (437)
T ss_pred CC
Confidence 53
No 397
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.84 E-value=0.00019 Score=75.64 Aligned_cols=182 Identities=21% Similarity=0.311 Sum_probs=121.7
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCCCCcHHH
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN-KMDSTEPPYSEAR 166 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN-K~D~~~~~~~~~~ 166 (459)
.=-|+-|--+-+...+..+...+.-+=|+.+.-|. -++..+.++...+- +|++.| |.+.
T Consensus 390 ikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~---------i~~~Dv~~a~~~~a--~i~~Fnv~~~~--------- 449 (587)
T TIGR00487 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGG---------ITETDISLASASNA--IIIGFNVRPDA--------- 449 (587)
T ss_pred EEeCCcchHHHHHHHHHhhcccCCeEEEEEeecCC---------CchhhHHHHHhcCC--EEEEEecCCCH---------
Confidence 33578887777777777777777778888887663 55666666666653 466655 2221
Q ss_pred HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCCCCe
Q psy13961 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEKPL 246 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~~p~ 246 (459)
..++..++.| ++++.- ++ .|. -.+.+-+++..+++|......--
T Consensus 450 ------~~~~~a~~~~-----v~i~~~------~i--------IY~-----------l~d~~~~~~~~~~~~~~~~~~~g 493 (587)
T TIGR00487 450 ------TAKNVAEAEN-----VDIRYY------SV--------IYK-----------LIDEIRAAMKGMLDPEYEEEIIG 493 (587)
T ss_pred ------HHHHHHHHcC-----CeEEEe------Ch--------HHH-----------HHHHHHHHHHhccCcceeeEeee
Confidence 1122222223 233321 11 010 00333444445555543222223
Q ss_pred eEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 247 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 247 ~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
...|..+|+.+..|.++.++|..|+++.|..+.+.+.+. ..+|.||+.+..++.++..|+-|++.+.+ ..+++.|
T Consensus 494 ~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~g 571 (587)
T TIGR00487 494 QAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN--YNDIKEG 571 (587)
T ss_pred eEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec--cccCCCC
Confidence 456779999988899999999999999999999988774 35788899999999999999999999988 4789999
Q ss_pred EEEc
Q psy13961 324 FVAG 327 (459)
Q Consensus 324 ~vl~ 327 (459)
|+|-
T Consensus 572 D~i~ 575 (587)
T TIGR00487 572 DIIE 575 (587)
T ss_pred CEEE
Confidence 9984
No 398
>PRK12288 GTPase RsgA; Reviewed
Probab=97.84 E-value=2.2e-05 Score=77.36 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.++++|.+|+|||||+|+|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4789999999999999999743
No 399
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.81 E-value=2.3e-05 Score=76.66 Aligned_cols=59 Identities=29% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+...++.++|-+|+|||||+|+|+...... .. +..|+|-.......+.
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~-------------------------~s-----~~PG~Tk~~q~i~~~~- 177 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-------------------------TS-----NRPGTTKGIQWIKLDD- 177 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhccccee-------------------------eC-----CCCceecceEEEEcCC-
Confidence 3456889999999999999999997432211 11 1237777766655543
Q ss_pred CEEEEEEeCCCc
Q psy13961 84 KFYVTIIDAPGH 95 (459)
Q Consensus 84 ~~~~~liDtpG~ 95 (459)
.+.|+||||.
T Consensus 178 --~i~LlDtPGi 187 (322)
T COG1161 178 --GIYLLDTPGI 187 (322)
T ss_pred --CeEEecCCCc
Confidence 4899999995
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.80 E-value=3e-05 Score=68.76 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..+++++|.+|+|||||+++|+.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999974
No 401
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.79 E-value=2.5e-05 Score=73.45 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|++|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 46899999999999999999743
No 402
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.79 E-value=3.5e-05 Score=74.39 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=39.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+++++|.+|+|||||+|+|+...... . ....|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-------------------------~-----~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-------------------------T-----GNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-------------------------c-----CCCCCeEEEEEEEEe---CC
Confidence 45789999999999999999997421100 0 112366776654332 24
Q ss_pred EEEEEeCCCcc
Q psy13961 86 YVTIIDAPGHR 96 (459)
Q Consensus 86 ~~~liDtpG~~ 96 (459)
.+.|+||||..
T Consensus 167 ~~~l~DtPGi~ 177 (287)
T PRK09563 167 GLELLDTPGIL 177 (287)
T ss_pred cEEEEECCCcC
Confidence 68899999963
No 403
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.78 E-value=0.00045 Score=74.95 Aligned_cols=180 Identities=21% Similarity=0.325 Sum_probs=119.8
Q ss_pred EeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCCCCcHHHHH
Q psy13961 90 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN-KMDSTEPPYSEARFE 168 (459)
Q Consensus 90 iDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~ 168 (459)
-|+-|.-+-+...+..+..-+.-+=|+.+.-|. -+..-+.++...+- +|+..| |.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~---------it~~Dv~la~~~~a--~ii~Fnv~~~~----------- 651 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA---------ITESDVTLAAASNA--IIIGFNVRPDA----------- 651 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC---------CCHHHHHHHHhcCC--EEEEEcCCCCH-----------
Confidence 477777777777777777777777788777662 45555666655542 455555 2221
Q ss_pred HHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCCCCeeE
Q psy13961 169 EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEKPLRL 248 (459)
Q Consensus 169 ~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~~p~~~ 248 (459)
.++...+..+ +.+..- ++ .|. -.+++-+++..+++|.....-.-..
T Consensus 652 ----~~~~~a~~~~-----v~i~~~------~i--------IY~-----------l~d~~~~~~~~~l~~~~~e~~~g~a 697 (787)
T PRK05306 652 ----KARKLAEQEG-----VDIRYY------SI--------IYD-----------LIDDVKAAMSGMLEPEYEEEIIGQA 697 (787)
T ss_pred ----HHHHHHHHcC-----CEEEEe------Ch--------HHH-----------HHHHHHHHHhhccCchhheeeeeeE
Confidence 1111222222 222211 11 010 0133334444555554322222356
Q ss_pred EeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeEE
Q psy13961 249 PLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325 (459)
Q Consensus 249 ~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~v 325 (459)
.|..+|+++..|.++.++|..|+|+.|..+.+...+. ..+|.||..+..+|.++..|+-|++.+.+ ..+++.||+
T Consensus 698 ~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~--~~d~~~gD~ 775 (787)
T PRK05306 698 EVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN--YNDIKEGDI 775 (787)
T ss_pred EEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeec--cccCCCCCE
Confidence 6789999998899999999999999999999998774 46788999999999999999999999987 478999999
Q ss_pred Ec
Q psy13961 326 AG 327 (459)
Q Consensus 326 l~ 327 (459)
|-
T Consensus 776 ie 777 (787)
T PRK05306 776 IE 777 (787)
T ss_pred EE
Confidence 84
No 404
>KOG4423|consensus
Probab=97.77 E-value=5.4e-06 Score=71.75 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=92.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC---
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--- 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--- 84 (459)
.++.|+|.-++|||+++.+.+++.-.-.-+ ..|..+.+..-..|++
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yR-------------------------------AtIgvdfalkVl~wdd~t~ 74 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYR-------------------------------ATIGVDFALKVLQWDDKTI 74 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHH-------------------------------HHHhHHHHHHHhccChHHH
Confidence 378899999999999999998653111000 0011111112233333
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HH----cC--CceEEEEEEccCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FT----LG--VKQLIVGVNKMDS 157 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~----~~--ip~iivviNK~D~ 157 (459)
.++.|||..|+++|-.++--+.+.|.++.+|+|.+....+ + -+.....-+ .. .| +| ++...||+|.
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tf---e---~~skwkqdldsk~qLpng~Pv~-~vllankCd~ 147 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTF---E---PVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQ 147 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccc---c---HHHHHHHhccCcccCCCCCcch-heeccchhcc
Confidence 2567999999999987777778899999999999875322 1 111111111 11 23 44 5666799998
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
.. | ...+.-..+.++-+..||. -++.+|++.+.|+.|
T Consensus 148 e~--~---a~~~~~~~~d~f~kengf~----gwtets~Kenkni~E 184 (229)
T KOG4423|consen 148 EK--S---AKNEATRQFDNFKKENGFE----GWTETSAKENKNIPE 184 (229)
T ss_pred Ch--H---hhhhhHHHHHHHHhccCcc----ceeeeccccccChhH
Confidence 65 2 2233334566666666763 488999999999854
No 405
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.76 E-value=3.4e-05 Score=74.01 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+..+++++|.+|+|||||+|+|+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999963
No 406
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00014 Score=72.50 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCEEEEEEeCCCccch----HhHHHHhhc-----ccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMITGTS-----QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~~~~-----~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
.++.+.||||||.... +..+...+. ...-.+||+||+.+. .+..+.+......++.. +| +|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g-lI-lT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR-IL-LT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE-EE-EE
Confidence 4568899999997532 222222221 244689999998662 13444555556678885 33 59
Q ss_pred ccCCCC
Q psy13961 154 KMDSTE 159 (459)
Q Consensus 154 K~D~~~ 159 (459)
|+|-..
T Consensus 368 KLDEt~ 373 (432)
T PRK12724 368 KLDEAD 373 (432)
T ss_pred cccCCC
Confidence 999864
No 407
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.76 E-value=0.00061 Score=73.25 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=123.0
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc-cCCCCCCCcHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK-MDSTEPPYSEA 165 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK-~D~~~~~~~~~ 165 (459)
+.=-|+-|--+-+...+..+....+-+=|+.+.-|. -+...+.++...+- +|+..|= .+.
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~---------it~~Dv~lA~~~~a--~ii~Fnv~~~~-------- 606 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLGE---------VTETDVEFASTTNA--EILAFNTNLAP-------- 606 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecCC---------CCHHHHHHHHhcCC--EEEEeeCCCCH--------
Confidence 334588888777878877777777778888887663 56666667766653 4555552 221
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCCCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEKP 245 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~~p 245 (459)
.++...++.|. .+..- ++ .|. -.+.+-+++..+++|.......
T Consensus 607 -------~~~~~a~~~~v-----~i~~~------~i--------IY~-----------lid~~~~~~~~~l~~~~~~~~~ 649 (742)
T CHL00189 607 -------GAKKAARKLNI-----IIKEY------QV--------IYD-----------LLEYIEALMEDLLDPEYKKVPI 649 (742)
T ss_pred -------HHHHHHHHcCC-----EEEEe------Ch--------HHH-----------HHHHHHHHHhhccCceeeeeec
Confidence 11122222232 22211 11 010 0133344445555554333334
Q ss_pred eeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCcccCcce
Q psy13961 246 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 322 (459)
Q Consensus 246 ~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~ 322 (459)
-++.|..+|.++. |.++.++|.+|+++.|..+.+...+. ..+|.||+.+..++.++..|.-|++.+.+ ..+++.
T Consensus 650 g~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d~~~ 726 (742)
T CHL00189 650 GEAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQLWQS 726 (742)
T ss_pred eeEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCCCCc
Confidence 4667889999987 89999999999999999999998874 35788888899999999999999999987 578999
Q ss_pred eEEEc
Q psy13961 323 GFVAG 327 (459)
Q Consensus 323 G~vl~ 327 (459)
||+|-
T Consensus 727 gD~ie 731 (742)
T CHL00189 727 GDKIH 731 (742)
T ss_pred CCEEE
Confidence 99985
No 408
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.00025 Score=70.06 Aligned_cols=136 Identities=26% Similarity=0.323 Sum_probs=79.5
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCC------------CChHHHHHHHHHHHHhCCCcceeeeeccCchhHH-hcC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGG------------IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER-ERG 70 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~------------i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~-~~g 70 (459)
.+++..|.++|--||||||.++.|...... .....++.++..+.+.|-.-|.. -....+.+. .+|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHHHHHHH
Confidence 456788999999999999999999644311 01124555555555555322111 111122221 111
Q ss_pred ceEEeeeeEEeeCCEEEEEEeCCCccch----HhHH--HHhhcccCEEEEEEECCCCceeccccCCCchHHHHH--HHHH
Q psy13961 71 ITIDIALWKFETSKFYVTIIDAPGHRDF----IKNM--ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL--LAFT 142 (459)
Q Consensus 71 ~Ti~~~~~~~~~~~~~~~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~--~~~~ 142 (459)
...+....+.+.|+||+|-... +.++ +.....+|=++||+||..| |.-.... +-.+
T Consensus 175 ------l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~ 238 (451)
T COG0541 175 ------LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEA 238 (451)
T ss_pred ------HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhh
Confidence 1123345578999999995443 3333 2334579999999999877 5544332 2234
Q ss_pred cCCceEEEEEEccCCCC
Q psy13961 143 LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 143 ~~ip~iivviNK~D~~~ 159 (459)
+++- =|++||+|-..
T Consensus 239 l~it--GvIlTKlDGda 253 (451)
T COG0541 239 LGIT--GVILTKLDGDA 253 (451)
T ss_pred cCCc--eEEEEcccCCC
Confidence 6666 34479999753
No 409
>KOG1487|consensus
Probab=97.75 E-value=7.5e-05 Score=68.30 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=54.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
-++.++|-+.+|||||+..|......+. ++ .+.|....-....+.+.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~va-----------------sy--------------efttl~~vpG~~~y~gaKi 108 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVA-----------------AY--------------EFTTLTTVPGVIRYKGAKI 108 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccc-----------------cc--------------cceeEEEecceEeccccce
Confidence 4899999999999999999863221111 00 0112221122244677789
Q ss_pred EEEeCCCccch-------HhHHHHhhcccCEEEEEEECCCC
Q psy13961 88 TIIDAPGHRDF-------IKNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 88 ~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g 121 (459)
.+.|.||..+- -+.++.-++.|+.+++|+|+-..
T Consensus 109 qlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 109 QLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred eeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 99999997543 33455667789999999998653
No 410
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.74 E-value=0.00011 Score=70.89 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=50.2
Q ss_pred hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC
Q psy13961 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP 185 (459)
Q Consensus 106 ~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 185 (459)
+..+|.+++|+|+.+..+. + .....++..+...++| +++|+||+|+.+. .. .... .......+
T Consensus 76 ~anvD~vllV~d~~~p~~s--~---~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~----~~---~~~~-~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN--P---RLLDRYLVAAEAAGIE-PVIVLTKADLLDD----EE---EELE-LVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC--H---HHHHHHHHHHHHcCCC-EEEEEEHHHCCCh----HH---HHHH-HHHHHhCC---
Confidence 5679999999999866311 1 1334456666778899 7888999999762 11 1111 11112233
Q ss_pred ceeeEeecCCCCCCcc
Q psy13961 186 ATVAFVPISGWHGDNM 201 (459)
Q Consensus 186 ~~~~~i~iSa~~g~~i 201 (459)
.+++++||.++.|+
T Consensus 139 --~~v~~vSA~~g~gi 152 (287)
T cd01854 139 --YPVLAVSAKTGEGL 152 (287)
T ss_pred --CeEEEEECCCCccH
Confidence 47899999999998
No 411
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.72 E-value=0.00046 Score=61.56 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=49.2
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
..+.+.|+|||+... ......+..+|.+++++..+..... .....+..++..+.+ +.+++||+|...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~-------~~~~~~~~l~~~~~~-~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLH-------DLERAVELVRHFGIP-VGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHH-------HHHHHHHHHHHcCCC-EEEEEeCCCCCc
Confidence 568999999996532 3445567789999999988754221 455666677778888 678899999753
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00019 Score=68.05 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=42.8
Q ss_pred CEEEEEEeCCCccch----HhHHHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 84 KFYVTIIDAPGHRDF----IKNMITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~~~~~liDtpG~~~~----~~~~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
++.+.||||||...+ +.++...+ ..+|-.+||+||+.+. .+..+.+......++.. ++ +||+|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~-~I-~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG-IV-FTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE-EE-EEeecC
Confidence 568999999997643 33333322 3578899999997431 13445555555567774 33 599998
Q ss_pred CC
Q psy13961 158 TE 159 (459)
Q Consensus 158 ~~ 159 (459)
..
T Consensus 224 t~ 225 (270)
T PRK06731 224 TA 225 (270)
T ss_pred CC
Confidence 75
No 413
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=3.7e-05 Score=75.83 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.++++|++|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4799999999999999999743
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.67 E-value=0.00028 Score=71.40 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCEEEEEEeCCCccchHhHHHH------hhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMIT------GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~------~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~ip~iivviNK~ 155 (459)
.++.+.|+||||...+-..... ....+|.++||+|+..+. ...+++... ...++-. +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---------~~~~~a~~f~~~v~i~g--iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---------DAVNTAKTFNERLGLTG--VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---------HHHHHHHHHHhhCCCCE--EEEeCc
Confidence 4567999999996433222222 133589999999997541 233333332 2456663 336999
Q ss_pred CCC
Q psy13961 156 DST 158 (459)
Q Consensus 156 D~~ 158 (459)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 964
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=97.67 E-value=0.00046 Score=69.89 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCEEEEEEeCCCccch----HhHHHH--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMIT--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~ 155 (459)
.++.+.|+||||.... +.++.. ....+|.++||+|+..+. ...+.+.... ..++- -+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---------~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---------DAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---------HHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4578999999995432 222211 123578889999997541 2223332222 34555 3446999
Q ss_pred CCC
Q psy13961 156 DST 158 (459)
Q Consensus 156 D~~ 158 (459)
|-.
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 964
No 416
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.67 E-value=0.00014 Score=72.54 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=59.2
Q ss_pred ccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHH
Q psy13961 95 HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEV 174 (459)
Q Consensus 95 ~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l 174 (459)
.++|...+......+|.+++|+|+.+-. . .....+.... .+.| +++|+||+|+.+.+ ...+++.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--~------s~~~~l~~~~-~~~p-iilV~NK~DLl~k~---~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--G------SLIPELKRFV-GGNP-VLLVGNKIDLLPKS---VNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--C------CccHHHHHHh-CCCC-EEEEEEchhhCCCC---CCHHHHHHHH
Confidence 4567765555557899999999986531 1 1112222111 2566 88899999997532 1233445555
Q ss_pred HhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 175 SGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 175 ~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+++++..++.+ ..++++||++|.|+.+.
T Consensus 117 ~~~~k~~g~~~--~~i~~vSAk~g~gv~eL 144 (360)
T TIGR03597 117 KKRAKELGLKP--VDIILVSAKKGNGIDEL 144 (360)
T ss_pred HHHHHHcCCCc--CcEEEecCCCCCCHHHH
Confidence 55566666532 24789999999998543
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.66 E-value=5.8e-05 Score=71.61 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...+++|+.|+|||||+|+|.-
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999963
No 418
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.66 E-value=0.00012 Score=71.99 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=28.4
Q ss_pred EEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 85 FYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 85 ~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
..+.++|.||... .-...++.++.+|++++||++..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4678999999753 34456677899999999999964
No 419
>KOG0082|consensus
Probab=97.65 E-value=0.00031 Score=68.34 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=61.7
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCC---chHHHHHHHHH---
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG---QTREHALLAFT--- 142 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~---qt~e~~~~~~~--- 142 (459)
|-.|..+....|...+..+-++|.+||..=.+.|+...-.++++|+|++.++-. .-+.... ...|.+.+...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYd--q~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYD--QVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhh--hhcccccchhHHHHHHHHHHHHhc
Confidence 445666667778888899999999999988899999999999999999987521 1111111 22233333322
Q ss_pred ----cCCceEEEEEEccCCCC
Q psy13961 143 ----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 143 ----~~ip~iivviNK~D~~~ 159 (459)
...+ +|+++||.|+-.
T Consensus 257 ~~~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 257 NKWFANTS-IILFLNKKDLFE 276 (354)
T ss_pred CcccccCc-EEEEeecHHHHH
Confidence 2456 899999999853
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=7.3e-05 Score=75.13 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=41.3
Q ss_pred eCCEEEEEEeCCCccchHhHHH---H---hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMI---T---GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~---~---~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
..++.+.+|||+|......... . .....+-.+||+||+.+. ....+.+......++..+ ++||+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--------~~~~~~~~~f~~~~~~~~--I~TKl 336 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--------DTLDEVISAYQGHGIHGC--IITKV 336 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--------HHHHHHHHHhcCCCCCEE--EEEee
Confidence 3567889999999765433221 1 223356788999998541 023333444455677743 35999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|-..
T Consensus 337 DEt~ 340 (420)
T PRK14721 337 DEAA 340 (420)
T ss_pred eCCC
Confidence 9874
No 421
>KOG3887|consensus
Probab=97.61 E-value=8e-05 Score=67.40 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=91.5
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|.++|+--+|||++.....+....-. ..++ |....+|.+ .+...=-.+.
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPne---------------------Tlfl-----ESTski~~d----~is~sfinf~ 78 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNE---------------------TLFL-----ESTSKITRD----HISNSFINFQ 78 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCc---------------------eeEe-----eccCcccHh----hhhhhhcceE
Confidence 499999999999999887765432211 0111 111111111 1111123677
Q ss_pred EEeCCCccchHhHH---HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCce---EEEEEEccCCCCCCC
Q psy13961 89 IIDAPGHRDFIKNM---ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ---LIVGVNKMDSTEPPY 162 (459)
Q Consensus 89 liDtpG~~~~~~~~---~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~---iivviNK~D~~~~~~ 162 (459)
+||-||+.+|..-. ..-.+.+-+.|+||||.+.-.+ +.++-|+..+++.++.+ +=|++-|.|-...++
T Consensus 79 v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 79 VWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred EeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 99999998875543 2335678899999999765333 25677888888876532 567789999876544
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWH 197 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~ 197 (459)
.-+.-..+......-++..|...-++.|..+|-..
T Consensus 153 kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 153 KIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 33333334444445555566543445566665443
No 422
>KOG1533|consensus
Probab=97.60 E-value=0.00015 Score=65.45 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCEEEEEEeCCCccch------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchH----HHHHHHHHcCCceEEEEE
Q psy13961 83 SKFYVTIIDAPGHRDF------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR----EHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~----e~~~~~~~~~ip~iivvi 152 (459)
....+.++|+||+-++ ....++.+..-|+-+.+|.-.+..+-... .+.. -.+.-...+..|| |=|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p---~~~iS~lL~sl~tMl~melph-VNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDP---SKFISSLLVSLATMLHMELPH-VNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCCh---HHHHHHHHHHHHHHHhhcccc-hhhh
Confidence 3568899999997543 55666767666665555443322111100 0111 1222334578997 5558
Q ss_pred EccCCCC
Q psy13961 153 NKMDSTE 159 (459)
Q Consensus 153 NK~D~~~ 159 (459)
.|+|+..
T Consensus 171 SK~Dl~~ 177 (290)
T KOG1533|consen 171 SKADLLK 177 (290)
T ss_pred hHhHHHH
Confidence 9999864
No 423
>PRK12288 GTPase RsgA; Reviewed
Probab=97.59 E-value=0.00034 Score=69.07 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=49.5
Q ss_pred hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC
Q psy13961 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP 185 (459)
Q Consensus 106 ~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 185 (459)
+.++|.+++|.+.... +. + ......+..+...++| .++|+||+|+.+. .....+ .+....++.++
T Consensus 118 aANvD~vlIV~s~~p~-~s--~---~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~----~~~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-LS--L---NIIDRYLVACETLGIE-PLIVLNKIDLLDD----EGRAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCC-CC--H---HHHHHHHHHHHhcCCC-EEEEEECccCCCc----HHHHHH-HHHHHHHHhCC---
Confidence 3568999988887543 21 1 1334455566778899 6788999999762 111112 22222233344
Q ss_pred ceeeEeecCCCCCCcc
Q psy13961 186 ATVAFVPISGWHGDNM 201 (459)
Q Consensus 186 ~~~~~i~iSa~~g~~i 201 (459)
++++++||.+++|+
T Consensus 183 --~~v~~vSA~tg~Gi 196 (347)
T PRK12288 183 --YRVLMVSSHTGEGL 196 (347)
T ss_pred --CeEEEEeCCCCcCH
Confidence 36899999999998
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00028 Score=70.43 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=41.5
Q ss_pred CCEEEEEEeCCCccch----HhHHHHhhcc--cC-EEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMITGTSQ--AD-CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~~~~~--aD-~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
.++.+.||||||.... +..+...+.. ++ -.+||+||+.+.. ...+.+.....+++.. + ++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~--------~~~~~~~~~~~~~~~~-~-I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS--------DVKEIFHQFSPFSYKT-V-IFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH--------HHHHHHHHhcCCCCCE-E-EEEec
Confidence 4678999999996542 2233333322 23 6899999986621 3344444454566774 3 35999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|-..
T Consensus 323 Det~ 326 (388)
T PRK12723 323 DETT 326 (388)
T ss_pred cCCC
Confidence 9864
No 425
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.58 E-value=0.001 Score=59.10 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=46.0
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.|+|||+.... .....+..+|.+|++++++..... .+...+..+...+.+.+.+++|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLR-------DADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHH-------HHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7899999986543 345567889999999988754222 3444555555667776778899998653
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00012 Score=71.96 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...++++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999643
No 427
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.58 E-value=7.8e-05 Score=71.91 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|++|+|||||++.|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 57899999999999999999743
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.58 E-value=8.3e-05 Score=74.04 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=39.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.++.++|.+|+|||||+|+|+.......+ ... .....|.|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------~~~------~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------VIT------TSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------eee------ecCCCCeEeeEEEEEe---CCCC
Confidence 58999999999999999999854321100 001 1122477776554433 2246
Q ss_pred EEEeCCCccc
Q psy13961 88 TIIDAPGHRD 97 (459)
Q Consensus 88 ~liDtpG~~~ 97 (459)
.++||||...
T Consensus 207 ~l~DtPG~~~ 216 (360)
T TIGR03597 207 SLYDTPGIIN 216 (360)
T ss_pred EEEECCCCCC
Confidence 7999999753
No 429
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.57 E-value=0.00017 Score=71.01 Aligned_cols=128 Identities=21% Similarity=0.256 Sum_probs=72.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeee-ccCch---hHH------hcCceEEe
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV-LDKLK---AER------ERGITIDI 75 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~-~d~~~---~e~------~~g~Ti~~ 75 (459)
+...|+++|+.|+||||.+-.|-...... .++-+.+.+ +|... .|. .-|+.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~----------------~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML----------------KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh----------------ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 46789999999999999998885432211 011111111 11100 000 01223322
Q ss_pred eeeE-------EeeCCEEEEEEeCCCccchHhHHH----Hhhc--ccCEEEEEEECCCCceeccccCCCchHHHHHHHHH
Q psy13961 76 ALWK-------FETSKFYVTIIDAPGHRDFIKNMI----TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 142 (459)
Q Consensus 76 ~~~~-------~~~~~~~~~liDtpG~~~~~~~~~----~~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~ 142 (459)
.... ....++.+.|+||.|+..+....+ ..+. ...-.-||++|+.. . ...++.+...+.
T Consensus 266 v~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~-------~dlkei~~~f~~ 337 (407)
T COG1419 266 VYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-Y-------EDLKEIIKQFSL 337 (407)
T ss_pred ecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-h-------HHHHHHHHHhcc
Confidence 2111 113457899999999876544333 3322 34556788888743 1 155666677777
Q ss_pred cCCceEEEEEEccCCCC
Q psy13961 143 LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 143 ~~ip~iivviNK~D~~~ 159 (459)
.++..+| +||+|-..
T Consensus 338 ~~i~~~I--~TKlDET~ 352 (407)
T COG1419 338 FPIDGLI--FTKLDETT 352 (407)
T ss_pred CCcceeE--EEcccccC
Confidence 8888543 49999875
No 430
>PRK13796 GTPase YqeH; Provisional
Probab=97.57 E-value=8.2e-05 Score=74.19 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=39.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..++.++|.+|+|||||+|+|+...... . +.....+..|.|.+.....+.. .
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~-----------------~--------~~~~~s~~pGTT~~~~~~~l~~---~ 211 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGE-----------------K--------DVITTSRFPGTTLDKIEIPLDD---G 211 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCc-----------------c--------ceEEecCCCCccceeEEEEcCC---C
Confidence 3579999999999999999998532110 0 0001123357777765544432 2
Q ss_pred EEEEeCCCcc
Q psy13961 87 VTIIDAPGHR 96 (459)
Q Consensus 87 ~~liDtpG~~ 96 (459)
..++||||..
T Consensus 212 ~~l~DTPGi~ 221 (365)
T PRK13796 212 SFLYDTPGII 221 (365)
T ss_pred cEEEECCCcc
Confidence 4799999974
No 431
>KOG0780|consensus
Probab=97.56 E-value=0.00017 Score=69.71 Aligned_cols=130 Identities=24% Similarity=0.327 Sum_probs=70.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChH--HHHHHHHHHHHhCCCcceeeeeccCchh-HHhcCceEEeee-----
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKR--TIEKFEKEAQEMGKGSFKYAWVLDKLKA-ERERGITIDIAL----- 77 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~--~~~~~~~~~~~~g~~~~~~~~~~d~~~~-e~~~g~Ti~~~~----- 77 (459)
++-.|.++|--|+||||.+..|.+....-..+ .++ ...|+.+ ..|+... ..+.++.+..++
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc----------aDTFRag-AfDQLkqnA~k~~iP~ygsyte~dp 168 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC----------ADTFRAG-AFDQLKQNATKARVPFYGSYTEADP 168 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe----------ecccccc-hHHHHHHHhHhhCCeeEecccccch
Confidence 45578899999999999999997543111000 000 0001110 1111111 111122221111
Q ss_pred --------eEEeeCCEEEEEEeCCCccc----hHhHHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHH--H
Q psy13961 78 --------WKFETSKFYVTIIDAPGHRD----FIKNMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA--F 141 (459)
Q Consensus 78 --------~~~~~~~~~~~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~--~ 141 (459)
..|..+++.++|+||.|.+. .+.+|..- +-.+|-+|+|+||+-| |..+....+ .
T Consensus 169 v~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~ 238 (483)
T KOG0780|consen 169 VKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKE 238 (483)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHH
Confidence 12445678999999999543 33444332 3459999999999977 655433222 2
Q ss_pred HcCCceEEEEEEccCCC
Q psy13961 142 TLGVKQLIVGVNKMDST 158 (459)
Q Consensus 142 ~~~ip~iivviNK~D~~ 158 (459)
..++- -+++||+|-.
T Consensus 239 ~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 239 TVDVG--AVILTKLDGH 253 (483)
T ss_pred hhccc--eEEEEecccC
Confidence 23444 3457999964
No 432
>KOG1491|consensus
Probab=97.52 E-value=0.00027 Score=67.28 Aligned_cols=88 Identities=23% Similarity=0.343 Sum_probs=57.0
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
+..-.+++++|+|.+|+|||||+++|+...- +-+.|.++ ||+.....++
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a-----------------~~~NfPF~--------------TIdPn~a~V~ 63 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKA-----------------GAANFPFC--------------TIDPNEARVE 63 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCC-----------------CccCCCcc--------------eeccccceee
Confidence 3334577999999999999999999974321 11223332 2222222111
Q ss_pred --------------eC---CEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 82 --------------TS---KFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 82 --------------~~---~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
.. .-.+++.|++|..+ .-...++-++.+|+++.||++..
T Consensus 64 v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 64 VPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11 24789999999643 34445667889999999999864
No 433
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0011 Score=68.14 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...|+++|+.|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 434
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.50 E-value=0.00013 Score=63.51 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll 28 (459)
...+++++|.+++|||||+++|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35688999999999999999996
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.50 E-value=0.0005 Score=55.70 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=42.3
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCc---eEEEEEEc
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK---QLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip---~iivviNK 154 (459)
.+.++|||+.... .....+..+|.++++++.+..... .+.+.+..++..+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~-------~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIR-------NAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHH-------HHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999997543 344567789999999988754222 455566666666654 57788886
No 436
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.42 E-value=0.00092 Score=57.07 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCCCCCc
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~~~~~ 163 (459)
+.+.++|+|+... ......+..+|.+++|++.+..... .+...+..+. ..+.+++.+++|+.+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~-------~~~~~l~~l~~~~~~~~~~lVvN~~~~~----- 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSIT-------DAYALIKKLAKQLRVLNFRVVVNRAESP----- 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHH-------HHHHHHHHHHHhcCCCCEEEEEeCCCCH-----
Confidence 6889999998643 3345667889999999998743221 3334443332 23444577889998743
Q ss_pred HHHHHHHHHHHHhhhh
Q psy13961 164 EARFEEIKKEVSGYIK 179 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~ 179 (459)
...+++.+.+.+.+.
T Consensus 111 -~~~~~~~~~~~~~~~ 125 (139)
T cd02038 111 -KEGKKVFKRLSNVSN 125 (139)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 223444555554443
No 437
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00067 Score=67.42 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=51.0
Q ss_pred hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC
Q psy13961 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP 185 (459)
Q Consensus 106 ~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 185 (459)
+..+|.+++|++++.. +. . ......+..+...+++. ++|+||+|+.+. .++..+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~-~~----~-~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~------~~~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-FN----L-RRIERYLALAWESGAEP-VIVLTKADLCED------AEEKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCC-CC----h-hHHHHHHHHHHHcCCCE-EEEEEChhcCCC------HHHHHHHHHHh--CC----
Confidence 4678999999999643 22 1 14455667778899994 778999999862 11222333322 12
Q ss_pred ceeeEeecCCCCCCcc
Q psy13961 186 ATVAFVPISGWHGDNM 201 (459)
Q Consensus 186 ~~~~~i~iSa~~g~~i 201 (459)
.++++++|+.+|+|+
T Consensus 171 -g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 171 -GVPVLAVSALDGEGL 185 (356)
T ss_pred -CCcEEEEECCCCccH
Confidence 357899999999987
No 438
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.35 E-value=0.0014 Score=66.61 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=39.9
Q ss_pred CCEEEEEEeCCCccchH----hHHHHhhc---ccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFI----KNMITGTS---QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~----~~~~~~~~---~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
.++.+.||||||...+. ..+...+. ..+-..||++++.+.. ...+.+......++-. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~--------~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE--------DLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH--------HHHHHHHHhCCCCCCE--EEEecc
Confidence 35789999999985442 22222222 3457789999975411 3334444445556543 446999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|-..
T Consensus 368 Det~ 371 (424)
T PRK05703 368 DETS 371 (424)
T ss_pred cccc
Confidence 9864
No 439
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.32 E-value=0.00048 Score=67.42 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=59.7
Q ss_pred CceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---eeccccCCCchHHHHHHHHH----
Q psy13961 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---FEAGISKNGQTREHALLAFT---- 142 (459)
Q Consensus 70 g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~~~~~~~~~qt~e~~~~~~~---- 142 (459)
..|+.+....|+..+..+.++|++|+....+.|...+..++++|+|||.++-. .|... .....+.+.+...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICNS 223 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHhC
Confidence 34455555667788899999999999999999999999999999999997521 01000 0122233322221
Q ss_pred ---cCCceEEEEEEccCCC
Q psy13961 143 ---LGVKQLIVGVNKMDST 158 (459)
Q Consensus 143 ---~~ip~iivviNK~D~~ 158 (459)
.+.| +++++||.|+.
T Consensus 224 ~~~~~~p-ill~~NK~D~f 241 (317)
T cd00066 224 RWFANTS-IILFLNKKDLF 241 (317)
T ss_pred ccccCCC-EEEEccChHHH
Confidence 3678 89999999974
No 440
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0011 Score=67.21 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=70.1
Q ss_pred eEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 247 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 247 ~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
..-+..+|.++..|.++.++|..|.++.|..+.+...+. ..+|.+++.+..++.++.+|+-|++.+++ ..+++.|
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~g 492 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEG 492 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCC
Confidence 345678999999999999999999999999999986553 36899999999999999999999999988 6889999
Q ss_pred EEEc
Q psy13961 324 FVAG 327 (459)
Q Consensus 324 ~vl~ 327 (459)
|+|-
T Consensus 493 D~le 496 (509)
T COG0532 493 DILE 496 (509)
T ss_pred CEEE
Confidence 9984
No 441
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.32 E-value=0.00073 Score=66.75 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=60.4
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---eeccccCCCchHHHHHHHH----
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---FEAGISKNGQTREHALLAF---- 141 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~~~~~~~~~qt~e~~~~~~---- 141 (459)
+-.|..+....|...+..+.++|.+|+..+.+.|...+..++++|+|||.++-. .|..- .....+.+.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~--~nrl~esl~~f~~l~~ 245 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES--TNRMQESLNLFESICN 245 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCc--chHHHHHHHHHHHHHc
Confidence 344555666678888899999999999999999999999999999999997520 11000 001222222221
Q ss_pred ---HcCCceEEEEEEccCCC
Q psy13961 142 ---TLGVKQLIVGVNKMDST 158 (459)
Q Consensus 142 ---~~~ip~iivviNK~D~~ 158 (459)
..+.| +++++||.|+.
T Consensus 246 ~~~~~~~p-iil~~NK~D~~ 264 (342)
T smart00275 246 SRWFANTS-IILFLNKIDLF 264 (342)
T ss_pred CccccCCc-EEEEEecHHhH
Confidence 13577 89999999985
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=97.32 E-value=0.00094 Score=66.65 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=55.7
Q ss_pred chHhHHHHhhcccC-EEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHH
Q psy13961 97 DFIKNMITGTSQAD-CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVS 175 (459)
Q Consensus 97 ~~~~~~~~~~~~aD-~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~ 175 (459)
+|. .++..+..+| .+++|||+.+- +. .....+.... -+.| +++|+||+|+.+.+ ...+++.+.+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~--~~------s~~~~L~~~~-~~kp-viLViNK~DLl~~~---~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDF--NG------SWIPGLHRFV-GNNP-VLLVGNKADLLPKS---VKKNKVKNWLR 123 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccC--CC------chhHHHHHHh-CCCC-EEEEEEchhhCCCc---cCHHHHHHHHH
Confidence 444 4677777666 89999999753 21 1222222211 2567 78889999997532 12233444455
Q ss_pred hhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 176 GYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 176 ~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
.+.+..|+.+ ..++++||++|.|+.+
T Consensus 124 ~~~k~~g~~~--~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 124 QEAKELGLRP--VDVVLISAQKGHGIDE 149 (365)
T ss_pred HHHHhcCCCc--CcEEEEECCCCCCHHH
Confidence 5555556532 2478999999999854
No 443
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.31 E-value=0.00061 Score=60.83 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=37.3
Q ss_pred CEEEEEEeCCCccchHhHH-----HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNM-----ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~-----~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.....||.+.|..+-...+ .......+.+|.|||+..-... .... ..+..++..-. ++++||+|++
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~-------~~~~-~~~~~Qi~~AD-vIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDEL-------ENIP-ELLREQIAFAD-VIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGH-------TTHC-HHHHHHHCT-S-EEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccccc-------ccch-hhhhhcchhcC-EEEEeccccC
Confidence 3577899999965543331 2223457999999999542000 1111 22234445555 4557999998
Q ss_pred C
Q psy13961 159 E 159 (459)
Q Consensus 159 ~ 159 (459)
+
T Consensus 155 ~ 155 (178)
T PF02492_consen 155 S 155 (178)
T ss_dssp H
T ss_pred C
Confidence 6
No 444
>PRK00098 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.0003 Score=68.20 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|++|+|||||+|.|+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999974
No 445
>KOG2485|consensus
Probab=97.22 E-value=0.00044 Score=65.27 Aligned_cols=67 Identities=27% Similarity=0.279 Sum_probs=45.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
...+.++-|+|-+|+|||||+|++......... + + ....+.|+|+.+...---.+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k---------~----------a------~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK---------A----------A------RVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc---------c----------e------eccCCCCceeeehhheEecc
Confidence 346789999999999999999998543221110 0 1 11234688888765433345
Q ss_pred CEEEEEEeCCCc
Q psy13961 84 KFYVTIIDAPGH 95 (459)
Q Consensus 84 ~~~~~liDtpG~ 95 (459)
...+.++||||.
T Consensus 195 rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 RPPVYLIDTPGI 206 (335)
T ss_pred CCceEEecCCCc
Confidence 667999999994
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.21 E-value=0.0024 Score=65.47 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|+.|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999999974
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0019 Score=69.38 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...|+++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 35789999999999999999974
No 448
>KOG0447|consensus
Probab=97.19 E-value=0.0063 Score=61.43 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=48.8
Q ss_pred CceEEeeeeEEeeC---CEEEEEEeCCCccc-------------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCch
Q psy13961 70 GITIDIALWKFETS---KFYVTIIDAPGHRD-------------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 133 (459)
Q Consensus 70 g~Ti~~~~~~~~~~---~~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt 133 (459)
|.|+......++.. -..+.++|.||... .......++..++++||+|-- |...+ +. ...
T Consensus 394 GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVDA--ER-SnV 468 (980)
T KOG0447|consen 394 GCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVDA--ER-SIV 468 (980)
T ss_pred CcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcch--hh-hhH
Confidence 55554433333322 25789999999632 234445567889999999842 21110 00 011
Q ss_pred HHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 134 REHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 134 ~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
-.....+.-+|.. .|+|++|.|++..
T Consensus 469 TDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 469 TDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred HHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 1222334446777 6888999999864
No 449
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.17 E-value=0.0026 Score=62.15 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.-.++.|.-|||||||+++|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35678999999999999999854
No 450
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.16 E-value=0.0064 Score=59.25 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=49.5
Q ss_pred EEEEEEeCCCccchHhHHHH--------hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 85 FYVTIIDAPGHRDFIKNMIT--------GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~--------~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
....+|.|-|..+=.+-+.. .....|.+|-||||...... . .. ..-..-.++..-. ++++||.|
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~--~----~~-~~~~~~~Qia~AD-~ivlNK~D 156 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEG--L----DA-IAELAEDQLAFAD-VIVLNKTD 156 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhh--H----HH-HHHHHHHHHHhCc-EEEEeccc
Confidence 56789999997654332222 22346889999999753210 0 10 0111122333443 55589999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCC
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISG 195 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa 195 (459)
++++ +.. +.++..+++++ ...+++..|.
T Consensus 157 lv~~----~~l----~~l~~~l~~ln---p~A~i~~~~~ 184 (323)
T COG0523 157 LVDA----EEL----EALEARLRKLN---PRARIIETSY 184 (323)
T ss_pred CCCH----HHH----HHHHHHHHHhC---CCCeEEEccc
Confidence 9973 223 33444444433 2456676664
No 451
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.15 E-value=0.0023 Score=60.91 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=56.3
Q ss_pred cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCc
Q psy13961 107 SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA 186 (459)
Q Consensus 107 ~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~ 186 (459)
...|-+++|+++..+.+. ..+....|..+...|+.+ ++++||+|+.+. +.... ++.......+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~----~~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIEP-VIVLNKIDLLDD----EEAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCcE-EEEEEccccCcc----hHHHH--HHHHHHHHhCCe---
Confidence 347889999999877654 124566778888999995 666899999973 22222 445555566676
Q ss_pred eeeEeecCCCCCCccc
Q psy13961 187 TVAFVPISGWHGDNML 202 (459)
Q Consensus 187 ~~~~i~iSa~~g~~i~ 202 (459)
+++.+|+++++++.
T Consensus 143 --~v~~~s~~~~~~~~ 156 (301)
T COG1162 143 --PVLFVSAKNGDGLE 156 (301)
T ss_pred --eEEEecCcCcccHH
Confidence 68899999998874
No 452
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.14 E-value=0.0038 Score=49.25 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=58.3
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec-cccceeEcCCCeEEEEEccCcccCc-ceeEE
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH-HEALQEAVPGDNVGFNVKNVSVKEL-RRGFV 325 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~-~~~v~~a~aGd~v~l~l~~~~~~~i-~~G~v 325 (459)
..|.++...++.|.+++..|.+|+|++||.+..+.. ..+|++|... ..++++|.||+.|.+. ++ +++ ..||.
T Consensus 3 g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~--~~~P~aGd~ 76 (95)
T cd03702 3 GVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT--YGKVRAMFDENGKRVKEAGPSTPVEIL--GL--KGVPQAGDK 76 (95)
T ss_pred EEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc--ccEEEEEECCCCCCCCEECCCCcEEEc--CC--CCCCCCCCE
Confidence 456777777899999999999999999999999876 4699998764 5889999999999763 43 222 44655
Q ss_pred Ec
Q psy13961 326 AG 327 (459)
Q Consensus 326 l~ 327 (459)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 54
No 453
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.09 E-value=0.0011 Score=58.56 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCEEEEEEeCCCccchHhHHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.++.+.|+|||+... ...... +..+|.+++|+........ .+.+.+..++..+.+.+-+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALD-------DVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHH-------HHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999998643 222222 2578999999977643222 667778888888998667889999864
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.06 E-value=0.0031 Score=50.69 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.6
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g 121 (459)
+.+.++|+|+...- .....+..+|.++++++++..
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 57899999996543 233667789999999988653
No 455
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.96 E-value=0.013 Score=57.83 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-.++.|..|||||||+++|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999854
No 456
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.93 E-value=0.0095 Score=47.97 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=58.1
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccc-----------cceeEcCCCeEEEEEcc
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHE-----------ALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~-----------~v~~a~aGd~v~l~l~~ 314 (459)
..|.++-..+|.|+++.--|.+|+|++||.|.++... ...+|+.+...+. ++++|.|..-+-+...+
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 4567788888999999999999999999999998765 3468999876543 78888866666665445
Q ss_pred CcccCcceeEEE
Q psy13961 315 VSVKELRRGFVA 326 (459)
Q Consensus 315 ~~~~~i~~G~vl 326 (459)
+ +++..|+-+
T Consensus 83 L--~~v~aG~~~ 92 (110)
T cd03703 83 L--EKAIAGSPL 92 (110)
T ss_pred C--ccccCCCEE
Confidence 3 444566654
No 457
>KOG4181|consensus
Probab=96.89 E-value=0.011 Score=56.74 Aligned_cols=22 Identities=41% Similarity=0.359 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll 28 (459)
-..|+++|.-|+|||||++.|.
T Consensus 188 f~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHh
Confidence 3567999999999999999885
No 458
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.89 E-value=0.006 Score=61.48 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGI 34 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i 34 (459)
..+|+|+|+.++|||||++.|....+..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999998775554
No 459
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.86 E-value=0.037 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.+-|+++|++-+||||++.++....
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~ 41 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELL 41 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHh
Confidence 5789999999999999999998654
No 460
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.85 E-value=0.006 Score=47.70 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=45.8
Q ss_pred EEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEEE
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTI 89 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~l 89 (459)
+++.|..|+||||+...|...... .|..+ ..++ .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999643210 11111 0011 7889
Q ss_pred EeCCCccchHhH-HHHhhcccCEEEEEEECCCC
Q psy13961 90 IDAPGHRDFIKN-MITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 90 iDtpG~~~~~~~-~~~~~~~aD~~ilVvda~~g 121 (459)
+|+|+....... ....+..+|.++++++.+..
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999987553321 24556689999999988754
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.83 E-value=0.014 Score=56.13 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+.+..|.++|--|+||||-++.|.+.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHH
Confidence 45778899999999999999999754
No 462
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.75 E-value=0.0031 Score=72.30 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=16.0
Q ss_pred EEEEecCCCChHHHHhHH
Q psy13961 10 IVVIGHVDSGKSTTTGHL 27 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~L 27 (459)
..|+|++|||||||+.+-
T Consensus 114 YlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCchhHHHHhC
Confidence 479999999999999765
No 463
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.66 E-value=0.0085 Score=63.35 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=61.7
Q ss_pred EEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcc-cCcceeEEEcc
Q psy13961 252 DVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV-KELRRGFVAGD 328 (459)
Q Consensus 252 ~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~-~~i~~G~vl~~ 328 (459)
.+|+.+. +.++.++|..|+|+.|..|.......-.+|.||+.+..+|++|.+|+-|++.+.+... .++..||+|-.
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPLMKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeEEecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6888766 7899999999999999987432222346888999999999999999999999987422 68899999854
No 464
>KOG2743|consensus
Probab=96.63 E-value=0.014 Score=55.00 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=44.1
Q ss_pred CCEEEEEEeCCCccchHhHH--------HHhhcccCEEEEEEECCCCcee-ccccCCCchHH-HHHHHHHcCCceEEEEE
Q psy13961 83 SKFYVTIIDAPGHRDFIKNM--------ITGTSQADCAVLIVAAGTGEFE-AGISKNGQTRE-HALLAFTLGVKQLIVGV 152 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~--------~~~~~~aD~~ilVvda~~g~~~-~~~~~~~qt~e-~~~~~~~~~ip~iivvi 152 (459)
.....+++.|.|..+-.+-. +..--..|++|-||||.....- ......+...| +.+++.+ .-|+ +
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A----D~II-~ 218 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA----DRII-M 218 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh----heee-e
Confidence 34678899999987642221 1112347999999999643110 00000111111 2222221 1233 6
Q ss_pred EccCCCCCCCcHHHHHHHHHHHH
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVS 175 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~ 175 (459)
||.|+++ ++....+.+.++
T Consensus 219 NKtDli~----~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 219 NKTDLVS----EEEVKKLRQRIR 237 (391)
T ss_pred ccccccC----HHHHHHHHHHHH
Confidence 9999997 355555655555
No 465
>KOG2484|consensus
Probab=96.55 E-value=0.0016 Score=63.56 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-+..++++|+|-+|+||||++|.|...
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHh
Confidence 367899999999999999999999753
No 466
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.49 E-value=0.067 Score=45.91 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
..|+|+|+-.+|||||+++|-...+.
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCC
Confidence 57999999999999999999765554
No 467
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.49 E-value=0.0075 Score=53.41 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=28.5
Q ss_pred CEEEEEEECCCCceeccccCCCchHHHHHH--HHHcCCceEEEEEEccCCCC
Q psy13961 110 DCAVLIVAAGTGEFEAGISKNGQTREHALL--AFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 110 D~~ilVvda~~g~~~~~~~~~~qt~e~~~~--~~~~~ip~iivviNK~D~~~ 159 (459)
|++++|+||...... ...+.... +...+.| +|+|+||+|+++
T Consensus 1 DvVl~VvDar~p~~~-------~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGC-------RCPQVEEAVLQAGGNKK-LVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCC-------CCHHHHHHHHhccCCCC-EEEEEehhhcCC
Confidence 789999999875322 23333333 3335678 788899999986
No 468
>PRK13695 putative NTPase; Provisional
Probab=96.49 E-value=0.0077 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.+|+++|.+|+|||||+..+...
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999987643
No 469
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.49 E-value=0.019 Score=45.36 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=51.5
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeEEE
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNVGF 310 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v~l 310 (459)
..|.++-..++.|.+++..|.+|+|++||.+..+.. ..+|+.+.. +...+.+|.|++.|.+
T Consensus 3 g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 3 GTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT--YGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred EEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc--cceEEEEECCCCCCccccCCCCCEEE
Confidence 456677777899999999999999999999999876 568888765 4678999999998854
No 470
>KOG2423|consensus
Probab=96.45 E-value=0.0014 Score=63.59 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHH
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll 28 (459)
.|+.+.|+++|.+|+|||+++|.|-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLR 328 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHh
Confidence 5788999999999999999999995
No 471
>KOG1424|consensus
Probab=96.38 E-value=0.0027 Score=63.86 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
++.++|++||.+|+|||++||.|..
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG 336 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVG 336 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhc
Confidence 4468999999999999999999974
No 472
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=96.37 E-value=0.036 Score=42.74 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=44.4
Q ss_pred CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEEC-
Q psy13961 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDM- 429 (459)
Q Consensus 351 ~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~- 429 (459)
.||+.|...++.+|+..+.++|.++. +| .+++.|.+|+|.+..+ |..|-..
T Consensus 25 ~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~~Pvc~~~g~------rvaiSRri 76 (88)
T PF09173_consen 25 EPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELKKPVCAEKGE------RVAISRRI 76 (88)
T ss_dssp ----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEE-STTS------EEEEEEEE
T ss_pred ccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEecCCeEcCcCC------eeeeehhc
Confidence 47899999999999999999999874 22 4567889999998766 8777543
Q ss_pred -C--ceEEEEEE
Q psy13961 430 -R--QTVAVGVI 438 (459)
Q Consensus 430 -~--~tva~G~V 438 (459)
+ +.+|.|.|
T Consensus 77 ~~rWRLIG~G~I 88 (88)
T PF09173_consen 77 GNRWRLIGWGII 88 (88)
T ss_dssp TTSEEEEEEEEE
T ss_pred cCeEEEEEEEeC
Confidence 3 79999986
No 473
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.34 E-value=0.01 Score=41.57 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHHhhc-ccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHc-CCceEEEEEEccC
Q psy13961 102 MITGTS-QADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTL-GVKQLIVGVNKMD 156 (459)
Q Consensus 102 ~~~~~~-~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~-~ip~iivviNK~D 156 (459)
.+.++. -++++++++|.+.. -|. ...+++.+. ... +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~---CGy----sie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQ---CGY----SIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-T---TSS-----HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCC---CCC----CHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 444554 48999999999864 233 223333322 234 678 899999998
No 474
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.27 E-value=0.02 Score=60.78 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=59.8
Q ss_pred EEEEeCCceeEEEEEEEeeeEecCCeEEEecCC-eEEEEEEEEeccccceeEcCCCeEEEEEccCcc-cCcceeEEEc
Q psy13961 252 DVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN-LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV-KELRRGFVAG 327 (459)
Q Consensus 252 ~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~-~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~-~~i~~G~vl~ 327 (459)
.+|+.+. +.|+.++|..|+|+.|..|.- +.+ ...+|.||+.+..+|++|.+|+-|++.+.+... .++..||+|-
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~r-~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~ 550 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLIK-EDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILY 550 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEEE-ECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEE
Confidence 6888766 688999999999999998643 233 346788899999999999999999999987421 5788888874
No 475
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.09 E-value=0.1 Score=58.58 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=60.8
Q ss_pred EEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcc-cCcceeEEEcc
Q psy13961 252 DVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV-KELRRGFVAGD 328 (459)
Q Consensus 252 ~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~-~~i~~G~vl~~ 328 (459)
.+|+.+. +.|+.++|..|+|+.|..|.-.......+|.||+.++.+|++|.+|+-|++.+.+... .++..||+|-.
T Consensus 931 ~vF~~~~-~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSN-PAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCC-CeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 7888876 7899999999999999877432222346788899999999999999999999987321 47888888853
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.05 E-value=0.055 Score=47.78 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.0
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
|+. +....++++|..|||||||+.+|+..
T Consensus 1 ~~~-~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNK-TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCC-CCceEEEEECCCCChHHHHHHHHHHH
Confidence 443 33457899999999999999999743
No 477
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.87 E-value=0.0083 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhc
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.|+|.|.++|||||++..|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997543
No 478
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.83 E-value=0.019 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
+|+++|..++|||+|+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred EEEEECCCChhHHHHHHHHh
Confidence 68999999999999999984
No 479
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.82 E-value=0.023 Score=56.01 Aligned_cols=26 Identities=46% Similarity=0.441 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
..-++.++|++|||||||..-|....
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~ 97 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKL 97 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHH
Confidence 45689999999999999998887543
No 480
>KOG3859|consensus
Probab=95.82 E-value=0.05 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll 28 (459)
..||..+|..|-|||||+..|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLF 63 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLF 63 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHh
Confidence 4689999999999999999996
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.75 E-value=0.011 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhc
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
...+.|+.+||||||+.++..-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
No 482
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.014 Score=65.63 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=28.6
Q ss_pred cccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH----------cCCceEEEEEEccCCCC
Q psy13961 107 SQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT----------LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 107 ~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~----------~~ip~iivviNK~D~~~ 159 (459)
+..|++|+.+|..+=.. ..++.+ .|...++. ..+| +.+++||+|+..
T Consensus 213 ~piNGiiltlsv~~L~~-----~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLT-----ADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEecccccc
Confidence 45899999999864211 111222 22222221 3578 889999999985
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=95.72 E-value=0.013 Score=58.36 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.+++++|.+|+|||||++.|+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999753
No 484
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.69 E-value=0.014 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.-++++|..|||||||+++|+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHH
Confidence 35799999999999999999744
No 485
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.59 E-value=0.032 Score=56.36 Aligned_cols=87 Identities=21% Similarity=0.198 Sum_probs=58.5
Q ss_pred cCceEEeeeeEEee-CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---eeccccCCCchHHHHHHHHH--
Q psy13961 69 RGITIDIALWKFET-SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---FEAGISKNGQTREHALLAFT-- 142 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~~~~~~~~~qt~e~~~~~~~-- 142 (459)
|..|..+....|.. .+..+.++|+.|+..-.+.|+..+..++++|+||+.++=. .|..- .....+-+.+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~--~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN--TNRLHESLNLFESIC 296 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT--SBHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch--HHHHHHHHHHHHHHH
Confidence 34455566667788 8999999999999988899999999999999999976321 11110 1134444444432
Q ss_pred -----cCCceEEEEEEccCCC
Q psy13961 143 -----LGVKQLIVGVNKMDST 158 (459)
Q Consensus 143 -----~~ip~iivviNK~D~~ 158 (459)
.+.| +|+++||+|+.
T Consensus 297 ~~~~~~~~~-iil~lnK~D~f 316 (389)
T PF00503_consen 297 NNPWFKNTP-IILFLNKIDLF 316 (389)
T ss_dssp TSGGGTTSE-EEEEEE-HHHH
T ss_pred hCcccccCc-eEEeeecHHHH
Confidence 2456 89999999973
No 486
>KOG2484|consensus
Probab=95.56 E-value=0.044 Score=53.75 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=48.6
Q ss_pred EEeCCCcc-chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 89 IIDAPGHR-DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 89 liDtpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
-.|-+++. .|.++...-+..+|++|-|+||.+..-.. + .+..+.+ +.+.|-+++|+|+||+|+++. +..
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR--~--~~vE~~V--~~~~gnKkLILVLNK~DLVPr----Ev~ 195 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTR--C--PEVEEAV--LQAHGNKKLILVLNKIDLVPR----EVV 195 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCC--C--hhHHHHH--HhccCCceEEEEeehhccCCH----HHH
Confidence 34555543 47777778888999999999999863210 0 1233332 223554569999999999973 444
Q ss_pred HHHHHHHH
Q psy13961 168 EEIKKEVS 175 (459)
Q Consensus 168 ~~i~~~l~ 175 (459)
++....++
T Consensus 196 e~Wl~YLr 203 (435)
T KOG2484|consen 196 EKWLVYLR 203 (435)
T ss_pred HHHHHHHH
Confidence 44444333
No 487
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.45 E-value=0.027 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..+|++.|.+||||||++.+|+..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhhh
Confidence 578999999999999999999754
No 488
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.013 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.+|.|+|++||||||+...|....+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999986643
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.36 E-value=0.018 Score=52.64 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+++...|+++|++|||||||+..|....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566789999999999999999997543
No 490
>PRK08118 topology modulation protein; Reviewed
Probab=95.34 E-value=0.015 Score=51.27 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.+|.|+|++|||||||...|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997544
No 491
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.016 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+|+|+|.+|||||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998643
No 492
>KOG1144|consensus
Probab=95.27 E-value=0.17 Score=53.38 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=44.0
Q ss_pred EEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEcc
Q psy13961 262 VPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKN 314 (459)
Q Consensus 262 v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~ 314 (459)
|+...|..|.|+.|..|.+.... .-.+|.||++++.+|+.|.-||-|++.|.+
T Consensus 953 v~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 953 VLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred EEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 34458999999999999876533 346899999999999999999999998765
No 493
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.21 E-value=0.016 Score=42.78 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHhHHHH
Q psy13961 10 IVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~ 29 (459)
|++.|.+++||||+.++|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999963
No 494
>KOG0781|consensus
Probab=95.20 E-value=0.059 Score=54.02 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCEEEEEEeCCCccchHhHHHHh------hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEE--EEEEc
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITG------TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI--VGVNK 154 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~------~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~ii--vviNK 154 (459)
.++.+.|+||+|...-.....+. +..+|.+++|=.|--|. ....|.+..-..+.....|+.| ++++|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----dsv~q~~~fn~al~~~~~~r~id~~~ltk 539 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----DSVDQLKKFNRALADHSTPRLIDGILLTK 539 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----HHHHHHHHHHHHHhcCCCccccceEEEEe
Confidence 46789999999965433333333 35699999997775441 1111333333333444444432 55799
Q ss_pred cCCCC
Q psy13961 155 MDSTE 159 (459)
Q Consensus 155 ~D~~~ 159 (459)
.|.++
T Consensus 540 ~dtv~ 544 (587)
T KOG0781|consen 540 FDTVD 544 (587)
T ss_pred ccchh
Confidence 99987
No 495
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.19 E-value=0.018 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHhHHHHhcC
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
|.++|++|||||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999975443
No 496
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.17 E-value=0.015 Score=52.46 Aligned_cols=21 Identities=43% Similarity=0.419 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
-.++++|+.|||||||+.+|-
T Consensus 29 evv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999984
No 497
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.10 E-value=0.16 Score=44.22 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|..|+|||||+.+|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 498
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.06 E-value=0.016 Score=53.32 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHhHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHL 27 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~L 27 (459)
-|+|+|+.|||||||++.+
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 499
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.016 Score=53.51 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
-|+++|++|+|||||++.+.
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999985
No 500
>KOG1707|consensus
Probab=95.00 E-value=0.083 Score=54.28 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=59.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
-...-++|+-++|||.|++.++.. .+++. ..++.+ ...++.. .......+.
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr--~~~~~----------~~~~~~---------------~~~avn~--v~~~g~~k~ 475 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGR--SMSDN----------NTGTTK---------------PRYAVNS--VEVKGQQKY 475 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcc--ccccc----------cccCCC---------------Cceeeee--eeeccccce
Confidence 345689999999999999999742 11110 000000 0111111 111233345
Q ss_pred EEEEeCCCc-cchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCC
Q psy13961 87 VTIIDAPGH-RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 87 ~~liDtpG~-~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~ 159 (459)
+.|-|.+-. .+++.+- =..+|+++++.|.+... .+. ...+...... ..++| +++|.+|.|+..
T Consensus 476 LiL~ei~~~~~~~l~~k---e~~cDv~~~~YDsS~p~---sf~---~~a~v~~~~~~~~~~P-c~~va~K~dlDe 540 (625)
T KOG1707|consen 476 LILREIGEDDQDFLTSK---EAACDVACLVYDSSNPR---SFE---YLAEVYNKYFDLYKIP-CLMVATKADLDE 540 (625)
T ss_pred EEEeecCccccccccCc---cceeeeEEEecccCCch---HHH---HHHHHHHHhhhccCCc-eEEEeeccccch
Confidence 555565542 1111111 15799999999998541 111 1111111111 15678 788889999965
Done!