Query psy13961
Match_columns 459
No_of_seqs 349 out of 3205
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 5.3E-84 1.8E-88 657.1 50.7 424 4-442 14-438 (439)
2 1f60_A Elongation factor EEF1A 100.0 9.6E-82 3.3E-86 643.8 43.6 442 1-444 1-442 (458)
3 1jny_A EF-1-alpha, elongation 100.0 1.2E-78 4.2E-83 618.2 43.1 428 4-444 3-430 (435)
4 3p26_A Elongation factor 1 alp 100.0 1.6E-77 5.6E-82 617.7 42.8 428 4-446 30-480 (483)
5 1r5b_A Eukaryotic peptide chai 100.0 3.5E-78 1.2E-82 618.9 32.5 422 4-442 40-466 (467)
6 3izq_1 HBS1P, elongation facto 100.0 1.4E-76 4.6E-81 622.9 39.9 424 4-442 164-610 (611)
7 3mca_A HBS1, elongation factor 100.0 6.1E-76 2.1E-80 616.5 32.5 414 4-442 174-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 7.4E-71 2.5E-75 561.1 43.6 410 4-440 21-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 4.7E-65 1.6E-69 512.5 35.8 380 5-444 1-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 1.6E-64 5.6E-69 510.3 37.1 383 3-442 7-404 (405)
11 3avx_A Elongation factor TS, e 100.0 5.1E-60 1.7E-64 510.9 39.5 381 3-445 292-680 (1289)
12 1wb1_A Translation elongation 100.0 5.1E-61 1.7E-65 493.0 18.7 367 4-443 16-395 (482)
13 2elf_A Protein translation elo 100.0 9.5E-59 3.2E-63 460.3 31.4 334 9-439 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 6.2E-56 2.1E-60 448.4 37.5 343 4-439 7-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 2.7E-56 9.4E-61 450.5 34.8 343 4-439 5-407 (408)
16 3sjy_A Translation initiation 100.0 2.9E-52 9.8E-57 420.4 36.9 355 3-439 4-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 2.3E-44 8E-49 326.9 21.2 200 242-444 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 3.3E-41 1.1E-45 350.0 25.6 275 6-331 30-401 (548)
19 2ywe_A GTP-binding protein LEP 100.0 1.7E-38 5.9E-43 330.5 27.4 268 5-331 4-281 (600)
20 3cb4_D GTP-binding protein LEP 100.0 1.6E-37 5.6E-42 323.8 26.7 267 6-331 3-279 (599)
21 3tr5_A RF-3, peptide chain rel 100.0 5.5E-37 1.9E-41 316.7 24.1 275 6-330 12-382 (528)
22 4fn5_A EF-G 1, elongation fact 100.0 1.3E-37 4.5E-42 333.7 19.8 293 6-332 12-406 (709)
23 2h5e_A Peptide chain release f 100.0 3.7E-36 1.3E-40 310.9 23.8 293 5-330 11-383 (529)
24 3j25_A Tetracycline resistance 100.0 4.8E-39 1.6E-43 340.4 1.2 269 7-331 2-331 (638)
25 2rdo_7 EF-G, elongation factor 100.0 3.4E-35 1.2E-39 313.6 29.8 293 5-331 8-402 (704)
26 1dar_A EF-G, elongation factor 100.0 1.7E-34 5.7E-39 308.0 29.3 293 5-331 10-394 (691)
27 2xex_A Elongation factor G; GT 100.0 1.4E-33 4.6E-38 301.1 26.0 291 5-331 8-394 (693)
28 2dy1_A Elongation factor G; tr 100.0 3.5E-33 1.2E-37 296.9 23.6 270 5-331 7-367 (665)
29 1zo1_I IF2, translation initia 100.0 5.5E-34 1.9E-38 290.7 13.7 248 6-330 3-258 (501)
30 3izy_P Translation initiation 100.0 2.3E-35 8E-40 303.1 3.1 250 6-331 3-260 (537)
31 1g7s_A Translation initiation 100.0 4.9E-33 1.7E-37 290.5 18.3 259 5-331 3-329 (594)
32 1n0u_A EF-2, elongation factor 100.0 5.2E-31 1.8E-35 286.6 20.2 302 4-331 16-474 (842)
33 2lkc_A Translation initiation 99.8 2.6E-21 8.8E-26 171.5 9.0 151 4-201 5-158 (178)
34 1wf3_A GTP-binding protein; GT 99.8 1.2E-19 4.1E-24 174.9 15.3 150 1-201 1-160 (301)
35 1zd9_A ADP-ribosylation factor 99.8 3.7E-19 1.3E-23 159.5 15.7 162 4-237 19-184 (188)
36 3iev_A GTP-binding protein ERA 99.8 1.7E-19 6E-24 174.5 14.1 163 4-237 7-181 (308)
37 1wms_A RAB-9, RAB9, RAS-relate 99.8 7E-19 2.4E-23 155.5 16.4 152 1-201 1-161 (177)
38 2efe_B Small GTP-binding prote 99.8 3.2E-19 1.1E-23 158.3 14.2 162 4-238 9-175 (181)
39 2y8e_A RAB-protein 6, GH09086P 99.8 1.6E-19 5.3E-24 159.8 12.0 163 2-237 9-176 (179)
40 2hxs_A RAB-26, RAS-related pro 99.8 6.6E-19 2.3E-23 155.8 16.0 151 3-201 2-160 (178)
41 1zj6_A ADP-ribosylation factor 99.8 2.1E-19 7.3E-24 160.8 12.9 148 5-201 14-165 (187)
42 4dhe_A Probable GTP-binding pr 99.8 1.5E-19 5E-24 166.5 12.0 168 6-239 28-212 (223)
43 2hjg_A GTP-binding protein ENG 99.8 1.6E-19 5.5E-24 183.3 13.2 155 6-204 174-339 (436)
44 1r2q_A RAS-related protein RAB 99.8 3E-19 1E-23 156.5 13.1 164 3-237 2-168 (170)
45 4bas_A ADP-ribosylation factor 99.8 2.8E-19 9.6E-24 161.3 13.2 152 4-201 14-176 (199)
46 1upt_A ARL1, ADP-ribosylation 99.8 6.1E-19 2.1E-23 154.9 14.2 149 4-201 4-156 (171)
47 2dyk_A GTP-binding protein; GT 99.8 6.7E-19 2.3E-23 153.0 14.1 141 8-201 2-149 (161)
48 2h57_A ADP-ribosylation factor 99.8 3.7E-19 1.3E-23 159.6 12.3 150 5-201 19-174 (190)
49 2h17_A ADP-ribosylation factor 99.8 4.4E-19 1.5E-23 157.9 12.6 148 5-201 19-170 (181)
50 1r8s_A ADP-ribosylation factor 99.8 1.2E-18 4.2E-23 151.9 14.7 145 8-201 1-149 (164)
51 1ksh_A ARF-like protein 2; sma 99.8 6.4E-19 2.2E-23 157.4 13.0 148 5-201 16-167 (186)
52 2fg5_A RAB-22B, RAS-related pr 99.8 7.3E-19 2.5E-23 158.1 13.1 164 4-238 20-186 (192)
53 4dcu_A GTP-binding protein ENG 99.8 5.1E-19 1.8E-23 180.6 13.7 156 5-204 193-359 (456)
54 3i8s_A Ferrous iron transport 99.8 2.2E-19 7.6E-24 170.9 9.9 143 6-201 2-156 (274)
55 1ek0_A Protein (GTP-binding pr 99.8 1.6E-18 5.6E-23 151.7 14.1 164 6-237 2-168 (170)
56 3tkl_A RAS-related protein RAB 99.8 1.7E-18 5.7E-23 155.8 14.5 148 5-201 14-166 (196)
57 1m2o_B GTP-binding protein SAR 99.8 1.7E-18 5.8E-23 155.6 14.2 148 5-201 21-179 (190)
58 1fzq_A ADP-ribosylation factor 99.8 1.9E-18 6.6E-23 153.9 14.4 148 5-201 14-165 (181)
59 2b6h_A ADP-ribosylation factor 99.8 1.3E-18 4.4E-23 156.6 13.0 148 5-201 27-178 (192)
60 2fh5_B SR-beta, signal recogni 99.8 4.5E-18 1.5E-22 155.5 16.8 120 1-160 1-130 (214)
61 2fu5_C RAS-related protein RAB 99.8 9E-19 3.1E-23 155.9 11.5 148 5-201 6-158 (183)
62 2bme_A RAB4A, RAS-related prot 99.8 1.7E-18 5.9E-23 154.4 13.1 148 5-201 8-160 (186)
63 1z0j_A RAB-22, RAS-related pro 99.8 4.5E-19 1.5E-23 155.5 8.9 152 3-201 2-156 (170)
64 1g16_A RAS-related protein SEC 99.8 2.5E-18 8.4E-23 150.7 13.5 145 7-201 3-152 (170)
65 3t1o_A Gliding protein MGLA; G 99.8 8.7E-19 3E-23 157.6 10.6 155 4-201 11-179 (198)
66 3clv_A RAB5 protein, putative; 99.8 4.4E-18 1.5E-22 153.7 15.3 98 85-201 93-191 (208)
67 3tw8_B RAS-related protein RAB 99.8 1.4E-18 4.9E-23 153.8 11.8 149 4-201 6-158 (181)
68 2ew1_A RAS-related protein RAB 99.8 1.1E-18 3.6E-23 158.5 11.0 148 5-201 24-176 (201)
69 2g6b_A RAS-related protein RAB 99.8 4E-18 1.4E-22 151.0 14.5 150 4-201 7-161 (180)
70 2il1_A RAB12; G-protein, GDP, 99.8 1.7E-18 5.7E-23 155.8 12.1 149 5-201 24-177 (192)
71 3iby_A Ferrous iron transport 99.8 4.9E-19 1.7E-23 166.7 8.8 141 8-201 2-154 (256)
72 1moz_A ARL1, ADP-ribosylation 99.8 7E-19 2.4E-23 156.5 9.4 148 5-201 16-167 (183)
73 1z0f_A RAB14, member RAS oncog 99.8 9.2E-19 3.1E-23 154.8 10.1 150 5-201 13-165 (179)
74 2p5s_A RAS and EF-hand domain 99.8 2.4E-19 8.3E-24 162.2 6.4 157 4-201 25-184 (199)
75 1f6b_A SAR1; gtpases, N-termin 99.8 3.3E-18 1.1E-22 154.8 13.5 152 5-201 23-186 (198)
76 2gf0_A GTP-binding protein DI- 99.8 6.1E-18 2.1E-22 152.5 15.2 152 1-201 2-158 (199)
77 3llu_A RAS-related GTP-binding 99.8 2.7E-18 9.1E-23 155.0 12.8 160 4-201 17-184 (196)
78 1vg8_A RAS-related protein RAB 99.8 3.4E-18 1.1E-22 155.3 13.6 149 4-201 5-162 (207)
79 3cph_A RAS-related protein SEC 99.8 3.4E-18 1.2E-22 156.0 13.6 146 6-201 19-169 (213)
80 1ega_A Protein (GTP-binding pr 99.8 1.8E-18 6E-23 166.9 12.2 147 6-201 7-162 (301)
81 1ky3_A GTP-binding protein YPT 99.8 1.3E-18 4.4E-23 154.3 10.3 151 4-201 5-165 (182)
82 2hup_A RAS-related protein RAB 99.8 7.3E-18 2.5E-22 152.8 15.3 149 5-201 27-180 (201)
83 3a1s_A Iron(II) transport prot 99.8 1.8E-18 6E-23 163.1 11.5 144 5-201 3-154 (258)
84 2x77_A ADP-ribosylation factor 99.8 1.3E-18 4.5E-23 155.8 10.0 148 5-201 20-171 (189)
85 3bc1_A RAS-related protein RAB 99.8 4E-18 1.4E-22 152.7 13.2 148 5-201 9-172 (195)
86 1svi_A GTP-binding protein YSX 99.8 5.5E-18 1.9E-22 152.4 14.1 148 6-201 22-182 (195)
87 1c1y_A RAS-related protein RAP 99.8 4.2E-18 1.4E-22 148.8 12.9 149 6-201 2-154 (167)
88 3qq5_A Small GTP-binding prote 99.8 7.6E-19 2.6E-23 176.1 8.8 143 6-201 33-183 (423)
89 3pqc_A Probable GTP-binding pr 99.8 4.9E-18 1.7E-22 152.4 13.1 147 6-201 22-181 (195)
90 2bcg_Y Protein YP2, GTP-bindin 99.8 1.9E-18 6.7E-23 157.0 10.5 149 4-201 5-158 (206)
91 2gf9_A RAS-related protein RAB 99.8 1.9E-18 6.7E-23 154.8 10.3 149 6-201 21-172 (189)
92 1x3s_A RAS-related protein RAB 99.8 5.2E-18 1.8E-22 152.3 13.1 149 5-201 13-165 (195)
93 3k53_A Ferrous iron transport 99.8 1.1E-18 3.8E-23 165.9 9.0 143 6-201 2-153 (271)
94 1z08_A RAS-related protein RAB 99.8 1.6E-18 5.5E-23 152.0 9.3 150 3-201 2-156 (170)
95 2wji_A Ferrous iron transport 99.8 2.1E-18 7.3E-23 151.2 10.1 143 6-201 2-152 (165)
96 1u8z_A RAS-related protein RAL 99.8 6.6E-18 2.2E-22 147.4 13.1 149 5-201 2-154 (168)
97 2ce2_X GTPase HRAS; signaling 99.8 1.5E-17 5.2E-22 144.7 15.4 145 6-201 2-152 (166)
98 1z2a_A RAS-related protein RAB 99.8 2.4E-18 8.1E-23 150.5 10.2 148 5-201 3-154 (168)
99 2a5j_A RAS-related protein RAB 99.8 3.1E-18 1E-22 153.8 10.9 149 4-201 18-171 (191)
100 4gzl_A RAS-related C3 botulinu 99.8 4.4E-18 1.5E-22 154.7 12.0 152 4-201 27-192 (204)
101 1kao_A RAP2A; GTP-binding prot 99.8 1.1E-18 3.9E-23 152.1 7.7 146 6-201 2-153 (167)
102 1zbd_A Rabphilin-3A; G protein 99.7 1.1E-17 3.7E-22 151.6 14.4 149 6-201 7-158 (203)
103 4dsu_A GTPase KRAS, isoform 2B 99.7 1.3E-17 4.5E-22 148.8 14.7 146 5-201 2-153 (189)
104 1z06_A RAS-related protein RAB 99.7 5.5E-18 1.9E-22 151.8 12.0 149 4-201 17-175 (189)
105 2nzj_A GTP-binding protein REM 99.7 8.1E-18 2.8E-22 148.2 12.7 149 5-201 2-156 (175)
106 1mh1_A RAC1; GTP-binding, GTPa 99.7 4.3E-18 1.5E-22 151.6 11.0 154 4-201 2-167 (186)
107 2o52_A RAS-related protein RAB 99.7 2.9E-18 9.8E-23 155.3 10.0 148 5-201 23-175 (200)
108 2oil_A CATX-8, RAS-related pro 99.7 3.7E-18 1.3E-22 153.4 10.6 150 5-201 23-175 (193)
109 2a9k_A RAS-related protein RAL 99.7 1E-17 3.5E-22 149.1 13.1 148 4-201 15-168 (187)
110 2erx_A GTP-binding protein DI- 99.7 1.3E-17 4.5E-22 146.2 13.4 161 6-238 2-167 (172)
111 3dz8_A RAS-related protein RAB 99.7 2.2E-18 7.6E-23 154.7 8.5 149 6-201 22-173 (191)
112 4djt_A GTP-binding nuclear pro 99.7 2.7E-18 9.4E-23 157.4 9.2 152 1-201 5-162 (218)
113 3o47_A ADP-ribosylation factor 99.7 3.1E-18 1.1E-22 167.2 9.7 148 5-201 163-314 (329)
114 2f7s_A C25KG, RAS-related prot 99.7 7.8E-18 2.7E-22 154.3 11.6 148 5-201 23-186 (217)
115 4dkx_A RAS-related protein RAB 99.7 1E-17 3.6E-22 153.4 12.3 149 4-201 10-163 (216)
116 3con_A GTPase NRAS; structural 99.7 2.9E-17 1E-21 147.0 14.6 147 4-201 18-170 (190)
117 2wjg_A FEOB, ferrous iron tran 99.7 4.9E-18 1.7E-22 151.8 9.4 146 3-201 3-156 (188)
118 3gj0_A GTP-binding nuclear pro 99.7 2.3E-18 8E-23 158.4 7.4 149 4-201 12-162 (221)
119 2bov_A RAla, RAS-related prote 99.7 2.7E-17 9.2E-22 149.1 14.1 148 4-201 11-164 (206)
120 2hjg_A GTP-binding protein ENG 99.7 5.1E-18 1.8E-22 172.2 10.2 153 8-237 4-164 (436)
121 3kkq_A RAS-related protein M-R 99.7 3.7E-17 1.3E-21 145.3 14.5 148 4-201 15-169 (183)
122 3reg_A RHO-like small GTPase; 99.7 1.6E-17 5.4E-22 149.4 12.0 150 4-201 20-175 (194)
123 3t5g_A GTP-binding protein RHE 99.7 7E-18 2.4E-22 149.8 9.4 148 4-201 3-156 (181)
124 3cpj_B GTP-binding protein YPT 99.7 8.5E-18 2.9E-22 154.9 10.2 148 5-201 11-163 (223)
125 3q72_A GTP-binding protein RAD 99.7 2.2E-17 7.6E-22 144.2 12.2 146 7-201 2-151 (166)
126 2gco_A H9, RHO-related GTP-bin 99.7 1.1E-17 3.7E-22 151.6 10.2 151 5-201 23-187 (201)
127 2gj8_A MNME, tRNA modification 99.7 1.1E-17 3.9E-22 147.7 10.1 141 5-201 2-153 (172)
128 2fn4_A P23, RAS-related protei 99.7 7E-18 2.4E-22 149.4 8.7 148 4-201 6-159 (181)
129 2yc2_C IFT27, small RAB-relate 99.7 7.1E-18 2.4E-22 153.1 8.9 150 5-201 18-179 (208)
130 1mky_A Probable GTP-binding pr 99.7 2.7E-17 9.4E-22 167.0 14.1 142 8-201 2-153 (439)
131 3r7w_A Gtpase1, GTP-binding pr 99.7 6.4E-17 2.2E-21 156.5 15.7 156 6-201 2-168 (307)
132 2qu8_A Putative nucleolar GTP- 99.7 6.1E-17 2.1E-21 149.7 14.9 154 6-201 28-192 (228)
133 2fv8_A H6, RHO-related GTP-bin 99.7 2.7E-17 9.3E-22 149.7 12.0 151 5-201 23-187 (207)
134 3q85_A GTP-binding protein REM 99.7 3.5E-17 1.2E-21 143.4 12.1 146 7-201 2-154 (169)
135 2atx_A Small GTP binding prote 99.7 4E-17 1.4E-21 146.7 12.7 153 6-201 17-180 (194)
136 2j1l_A RHO-related GTP-binding 99.7 8.6E-17 2.9E-21 147.2 15.1 150 5-201 32-196 (214)
137 3bwd_D RAC-like GTP-binding pr 99.7 1.5E-17 5.2E-22 147.5 9.0 154 4-201 5-168 (182)
138 3l0i_B RAS-related protein RAB 99.7 9.2E-19 3.1E-23 158.4 0.9 147 6-201 32-183 (199)
139 2xtp_A GTPase IMAP family memb 99.7 2.1E-17 7.1E-22 156.0 10.0 154 5-201 20-195 (260)
140 3oes_A GTPase rhebl1; small GT 99.7 1.8E-17 6.1E-22 150.1 9.1 149 5-201 22-174 (201)
141 2j0v_A RAC-like GTP-binding pr 99.7 3.7E-17 1.3E-21 149.1 10.9 153 4-201 6-167 (212)
142 3b1v_A Ferrous iron uptake tra 99.7 1.3E-17 4.5E-22 158.1 7.4 141 7-201 3-151 (272)
143 1mky_A Probable GTP-binding pr 99.7 9.4E-17 3.2E-21 163.1 14.1 154 6-203 179-344 (439)
144 3lvq_E ARF-GAP with SH3 domain 99.7 8.7E-17 3E-21 166.1 13.7 148 5-201 320-471 (497)
145 3lxw_A GTPase IMAP family memb 99.7 8.2E-17 2.8E-21 150.8 12.2 137 4-183 18-177 (247)
146 3ihw_A Centg3; RAS, centaurin, 99.7 1.4E-16 4.7E-21 142.3 12.8 145 4-201 17-167 (184)
147 4dcu_A GTP-binding protein ENG 99.7 4.2E-17 1.4E-21 166.5 9.5 145 4-201 20-172 (456)
148 2q3h_A RAS homolog gene family 99.7 3.7E-16 1.3E-20 141.2 14.7 152 4-201 17-182 (201)
149 2iwr_A Centaurin gamma 1; ANK 99.7 2.5E-16 8.5E-21 139.3 13.3 145 4-201 4-156 (178)
150 2atv_A RERG, RAS-like estrogen 99.7 3.1E-16 1E-20 141.3 13.7 148 5-201 26-178 (196)
151 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-16 7.3E-21 150.3 13.2 156 5-201 6-191 (274)
152 3cbq_A GTP-binding protein REM 99.7 4.7E-16 1.6E-20 140.2 14.4 148 5-201 21-175 (195)
153 3gee_A MNME, tRNA modification 99.7 1.9E-16 6.5E-21 161.4 13.0 145 6-201 232-385 (476)
154 3c5c_A RAS-like protein 12; GD 99.7 1.6E-16 5.4E-21 142.2 10.6 149 4-201 18-173 (187)
155 3q3j_B RHO-related GTP-binding 99.7 2.5E-16 8.7E-21 144.1 11.9 153 5-201 25-190 (214)
156 1m7b_A RND3/RHOE small GTP-bin 99.7 3.8E-16 1.3E-20 139.2 12.6 154 4-201 4-170 (184)
157 2cxx_A Probable GTP-binding pr 99.7 3.5E-16 1.2E-20 139.7 11.2 149 8-201 2-171 (190)
158 1xzp_A Probable tRNA modificat 99.6 1.4E-16 4.7E-21 162.5 8.6 141 7-201 243-392 (482)
159 3th5_A RAS-related C3 botulinu 99.5 1E-17 3.4E-22 152.1 0.0 156 5-201 28-192 (204)
160 1gwn_A RHO-related GTP-binding 99.6 8.7E-16 3E-20 139.6 12.2 150 5-201 26-191 (205)
161 2zej_A Dardarin, leucine-rich 99.6 6.8E-16 2.3E-20 137.6 11.2 155 7-201 2-165 (184)
162 1nrj_B SR-beta, signal recogni 99.6 8.1E-16 2.8E-20 140.8 10.4 150 5-201 10-171 (218)
163 3geh_A MNME, tRNA modification 99.6 6.1E-16 2.1E-20 157.0 10.1 141 6-201 223-371 (462)
164 3lxx_A GTPase IMAP family memb 99.6 1.7E-15 5.7E-20 141.1 12.0 149 5-196 27-191 (239)
165 1lnz_A SPO0B-associated GTP-bi 99.6 6E-16 2E-20 151.1 8.8 145 9-201 160-317 (342)
166 2wkq_A NPH1-1, RAS-related C3 99.6 1.4E-15 4.9E-20 148.3 11.2 150 6-201 154-317 (332)
167 2qtf_A Protein HFLX, GTP-bindi 99.6 4.5E-15 1.5E-19 146.4 14.6 148 9-201 181-341 (364)
168 3def_A T7I23.11 protein; chlor 99.6 1.5E-15 5E-20 143.6 10.3 118 5-159 34-165 (262)
169 1h65_A Chloroplast outer envel 99.6 9.6E-15 3.3E-19 138.6 16.0 118 5-159 37-168 (270)
170 2e87_A Hypothetical protein PH 99.6 7.4E-15 2.5E-19 145.0 13.2 148 5-201 165-323 (357)
171 2g3y_A GTP-binding protein GEM 99.6 7.9E-15 2.7E-19 133.8 12.3 149 5-201 35-190 (211)
172 3r7w_B Gtpase2, GTP-binding pr 99.6 8.3E-15 2.8E-19 140.7 11.8 155 9-204 1-164 (331)
173 3dpu_A RAB family protein; roc 99.6 5.4E-15 1.8E-19 153.9 9.7 149 4-202 38-196 (535)
174 2aka_B Dynamin-1; fusion prote 99.6 1.7E-14 5.8E-19 138.7 12.4 104 84-203 124-242 (299)
175 2cjw_A GTP-binding protein GEM 99.6 2.2E-14 7.6E-19 128.8 11.9 149 5-201 4-159 (192)
176 1pui_A ENGB, probable GTP-bind 99.5 1E-13 3.6E-18 125.8 15.0 149 6-201 25-186 (210)
177 2f9l_A RAB11B, member RAS onco 99.5 7E-14 2.4E-18 126.1 13.2 147 6-201 4-155 (199)
178 1jwy_B Dynamin A GTPase domain 99.5 2.5E-14 8.7E-19 138.6 9.4 71 83-160 129-213 (315)
179 2ged_A SR-beta, signal recogni 99.5 2.3E-14 7.9E-19 128.3 8.3 114 5-160 46-171 (193)
180 2qag_A Septin-2, protein NEDD5 99.5 1.2E-13 4.1E-18 136.3 11.3 155 6-200 36-220 (361)
181 1oix_A RAS-related protein RAB 99.5 3.3E-13 1.1E-17 120.9 12.4 147 6-201 28-179 (191)
182 3c5h_A Glucocorticoid receptor 99.5 3.5E-14 1.2E-18 133.5 6.0 77 108-201 162-242 (255)
183 2j69_A Bacterial dynamin-like 99.5 6.9E-14 2.4E-18 149.2 8.5 67 85-159 174-244 (695)
184 1wxq_A GTP-binding protein; st 99.4 1E-13 3.5E-18 138.2 8.4 37 85-121 71-114 (397)
185 3p32_A Probable GTPase RV1496/ 99.4 5.5E-14 1.9E-18 138.6 6.3 102 81-201 168-271 (355)
186 2p67_A LAO/AO transport system 99.4 1.9E-13 6.5E-18 133.9 7.3 101 82-201 146-248 (341)
187 2www_A Methylmalonic aciduria 99.4 1.3E-12 4.5E-17 128.2 11.3 101 82-201 164-266 (349)
188 2qpt_A EH domain-containing pr 99.4 1.9E-12 6.6E-17 134.3 11.5 79 85-175 154-244 (550)
189 1udx_A The GTP-binding protein 99.4 3E-12 1E-16 127.8 12.2 145 9-201 159-312 (416)
190 2x2e_A Dynamin-1; nitration, h 99.3 1.3E-12 4.5E-17 128.6 7.8 104 84-203 129-247 (353)
191 3zvr_A Dynamin-1; hydrolase, D 99.3 5.1E-12 1.7E-16 134.1 11.1 104 84-203 149-267 (772)
192 2wsm_A Hydrogenase expression/ 99.3 2.2E-12 7.4E-17 118.2 6.7 153 6-201 29-201 (221)
193 3t34_A Dynamin-related protein 99.3 3.7E-12 1.3E-16 125.8 7.4 103 84-203 135-250 (360)
194 1yrb_A ATP(GTP)binding protein 99.3 6.8E-12 2.3E-16 118.0 7.6 66 85-159 109-185 (262)
195 1xe1_A Hypothetical protein PF 99.2 1.3E-10 4.5E-15 92.2 11.7 80 243-327 32-112 (116)
196 2qag_C Septin-7; cell cycle, c 99.1 3.9E-10 1.3E-14 112.6 13.1 154 7-201 31-214 (418)
197 4a9a_A Ribosome-interacting GT 99.1 6.3E-11 2.1E-15 116.4 6.6 111 7-158 72-195 (376)
198 1jal_A YCHF protein; nucleotid 99.1 4.3E-10 1.5E-14 109.9 10.5 82 8-120 3-108 (363)
199 2qnr_A Septin-2, protein NEDD5 99.1 7.2E-10 2.5E-14 106.4 11.8 47 144-201 155-201 (301)
200 4fid_A G protein alpha subunit 99.1 1.5E-09 5E-14 105.2 13.8 89 69-158 145-241 (340)
201 2qm8_A GTPase/ATPase; G protei 99.0 1.6E-10 5.5E-15 112.7 5.9 103 82-202 145-249 (337)
202 2j37_W Signal recognition part 99.0 2E-10 7E-15 117.1 5.3 67 83-159 182-254 (504)
203 3ohm_A Guanine nucleotide-bind 99.0 1.6E-09 5.5E-14 104.5 10.2 132 69-201 151-305 (327)
204 2dby_A GTP-binding protein; GD 98.9 1.8E-09 6E-14 106.2 8.1 37 84-120 68-111 (368)
205 2xtz_A Guanine nucleotide-bind 98.9 9.8E-09 3.4E-13 100.4 12.9 72 83-158 181-263 (354)
206 1cip_A Protein (guanine nucleo 98.9 3.2E-09 1.1E-13 103.9 8.1 129 69-201 177-331 (353)
207 2hf9_A Probable hydrogenase ni 98.8 3.9E-09 1.3E-13 96.6 5.6 94 84-201 118-211 (226)
208 2ohf_A Protein OLA1, GTP-bindi 98.7 1.6E-08 5.3E-13 99.8 8.0 85 5-120 20-128 (396)
209 1zcb_A G alpha I/13; GTP-bindi 98.7 1.3E-08 4.6E-13 99.8 6.9 129 69-201 185-340 (362)
210 2qag_B Septin-6, protein NEDD5 98.7 5.3E-08 1.8E-12 96.9 10.9 22 8-29 43-64 (427)
211 3ec1_A YQEH GTPase; atnos1, at 98.6 2.3E-09 7.9E-14 105.8 -2.0 117 7-159 162-288 (369)
212 3h2y_A GTPase family protein; 98.6 5.2E-09 1.8E-13 103.2 0.1 118 7-159 160-287 (368)
213 1u0l_A Probable GTPase ENGC; p 98.6 7.5E-08 2.6E-12 92.3 7.4 99 86-203 64-162 (301)
214 2v3c_C SRP54, signal recogniti 98.6 1.9E-07 6.4E-12 93.8 10.5 67 83-159 179-252 (432)
215 1tq4_A IIGP1, interferon-induc 98.6 6.7E-07 2.3E-11 88.9 14.0 168 7-238 69-253 (413)
216 3sop_A Neuronal-specific septi 98.5 4.6E-07 1.6E-11 85.3 11.5 63 108-183 111-174 (270)
217 1azs_C GS-alpha; complex (lyas 98.5 1.5E-07 5.2E-12 93.1 8.5 85 70-158 202-297 (402)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.7E-07 1.3E-11 90.2 8.4 86 5-120 18-127 (392)
219 1puj_A YLQF, conserved hypothe 98.4 9.5E-07 3.2E-11 83.7 9.3 90 89-201 3-93 (282)
220 3dm5_A SRP54, signal recogniti 98.3 3.6E-06 1.2E-10 84.1 12.8 67 83-159 181-253 (443)
221 3l82_B F-box only protein 4; T 98.3 2.3E-06 7.8E-11 76.1 9.7 165 5-201 14-210 (227)
222 3kl4_A SRP54, signal recogniti 98.2 2.7E-06 9.1E-11 85.0 8.3 66 83-159 178-252 (433)
223 2xxa_A Signal recognition part 98.2 1.8E-06 6.1E-11 86.7 6.9 66 83-159 182-254 (433)
224 2yv5_A YJEQ protein; hydrolase 98.2 1.6E-06 5.5E-11 83.0 6.3 124 95-238 66-190 (302)
225 1j8m_F SRP54, signal recogniti 98.1 6.3E-06 2.2E-10 78.5 8.0 67 83-159 179-253 (297)
226 1d1n_A Initiation factor 2; be 98.1 3.7E-06 1.3E-10 64.8 4.8 78 248-327 9-89 (99)
227 1f5n_A Interferon-induced guan 98.0 2.9E-06 9.9E-11 88.0 5.0 25 5-29 36-60 (592)
228 2crv_A IF-2MT, translation ini 98.0 1.7E-05 5.8E-10 63.3 8.1 80 247-328 12-98 (120)
229 3cnl_A YLQF, putative uncharac 98.0 3.7E-06 1.3E-10 78.7 4.7 84 92-201 4-88 (262)
230 1puj_A YLQF, conserved hypothe 97.9 7.4E-06 2.5E-10 77.5 5.5 25 5-29 118-142 (282)
231 3ec1_A YQEH GTPase; atnos1, at 97.9 1.1E-05 3.7E-10 79.4 6.8 100 87-202 51-150 (369)
232 3h2y_A GTPase family protein; 97.9 1.4E-05 4.9E-10 78.5 7.1 95 94-203 55-149 (368)
233 3l2o_B F-box only protein 4; s 97.8 3.4E-05 1.1E-09 72.0 7.6 127 54-201 156-295 (312)
234 3e70_C DPA, signal recognition 97.7 0.00013 4.5E-09 70.3 10.7 65 84-159 211-282 (328)
235 1zo1_I IF2, translation initia 97.6 0.00013 4.4E-09 74.3 9.2 97 230-328 393-492 (501)
236 1t9h_A YLOQ, probable GTPase E 97.6 7.4E-05 2.5E-09 71.2 6.4 83 105-202 83-165 (307)
237 2yhs_A FTSY, cell division pro 97.6 0.00023 7.8E-09 71.9 10.2 24 6-29 292-315 (503)
238 2ffh_A Protein (FFH); SRP54, s 97.5 0.00024 8.1E-09 70.8 9.6 66 83-159 179-251 (425)
239 3cnl_A YLQF, putative uncharac 97.5 3E-05 1E-09 72.4 2.8 22 8-29 100-121 (262)
240 1zu4_A FTSY; GTPase, signal re 97.5 0.00053 1.8E-08 65.9 10.9 25 5-29 103-127 (320)
241 1rj9_A FTSY, signal recognitio 97.5 0.00064 2.2E-08 64.8 11.1 25 6-30 101-125 (304)
242 3szr_A Interferon-induced GTP- 97.4 0.00034 1.2E-08 73.3 9.6 21 9-29 47-67 (608)
243 4dzz_A Plasmid partitioning pr 97.4 0.00098 3.4E-08 59.2 10.8 64 84-158 75-143 (206)
244 1vma_A Cell division protein F 97.3 0.00091 3.1E-08 63.7 10.4 25 6-30 103-127 (306)
245 3izy_P Translation initiation 97.3 0.00059 2E-08 70.0 8.9 101 226-327 428-534 (537)
246 2px0_A Flagellar biosynthesis 97.1 0.0011 3.6E-08 63.0 8.3 24 6-29 104-127 (296)
247 3q5d_A Atlastin-1; G protein, 97.0 0.0014 4.9E-08 65.5 7.9 26 5-30 65-90 (447)
248 1ls1_A Signal recognition part 97.0 0.0021 7.2E-08 60.9 8.7 23 7-29 98-120 (295)
249 2rcn_A Probable GTPase ENGC; Y 96.9 0.0028 9.6E-08 61.5 9.2 112 106-237 128-240 (358)
250 1g7s_A Translation initiation 96.8 0.0072 2.5E-07 62.9 11.4 82 245-328 463-548 (594)
251 3b9q_A Chloroplast SRP recepto 96.7 0.014 4.7E-07 55.4 12.3 25 6-30 99-123 (302)
252 2og2_A Putative signal recogni 96.7 0.0084 2.9E-07 58.3 10.5 25 6-30 156-180 (359)
253 1t9h_A YLOQ, probable GTPase E 96.0 0.0017 5.9E-08 61.7 1.5 23 7-29 173-195 (307)
254 3end_A Light-independent proto 95.8 0.034 1.2E-06 52.6 9.6 67 83-157 155-225 (307)
255 3k9g_A PF-32 protein; ssgcid, 95.8 0.032 1.1E-06 51.6 9.1 66 83-158 143-210 (267)
256 1zp6_A Hypothetical protein AT 95.6 0.0067 2.3E-07 53.0 3.6 28 3-30 5-32 (191)
257 4eun_A Thermoresistant glucoki 95.6 0.0071 2.4E-07 53.5 3.5 28 6-33 28-55 (200)
258 1lvg_A Guanylate kinase, GMP k 95.5 0.0058 2E-07 54.1 2.8 25 6-30 3-27 (198)
259 1ye8_A Protein THEP1, hypothet 95.3 0.0086 2.9E-07 52.1 3.0 23 9-31 2-24 (178)
260 1kgd_A CASK, peripheral plasma 95.2 0.011 3.7E-07 51.4 3.2 23 8-30 6-28 (180)
261 1qf9_A UMP/CMP kinase, protein 95.1 0.018 6.3E-07 50.0 4.5 31 1-32 1-31 (194)
262 3asz_A Uridine kinase; cytidin 95.0 0.014 4.8E-07 51.9 3.6 26 5-30 4-29 (211)
263 3c8u_A Fructokinase; YP_612366 95.0 0.015 5E-07 51.9 3.6 26 5-30 20-45 (208)
264 1kag_A SKI, shikimate kinase I 95.0 0.013 4.4E-07 50.2 3.1 25 8-32 5-29 (173)
265 1knq_A Gluconate kinase; ALFA/ 95.0 0.018 6.2E-07 49.5 4.0 28 5-32 6-33 (175)
266 1bif_A 6-phosphofructo-2-kinas 94.9 0.0082 2.8E-07 60.8 2.0 25 6-30 38-62 (469)
267 1uf9_A TT1252 protein; P-loop, 94.9 0.016 5.4E-07 51.0 3.5 30 1-30 1-31 (203)
268 1zd8_A GTP:AMP phosphotransfer 94.9 0.016 5.4E-07 52.3 3.6 33 1-33 1-33 (227)
269 3tr0_A Guanylate kinase, GMP k 94.9 0.015 5E-07 51.4 3.3 25 6-30 6-30 (205)
270 3a00_A Guanylate kinase, GMP k 94.8 0.014 4.6E-07 51.0 2.8 22 9-30 3-24 (186)
271 3ney_A 55 kDa erythrocyte memb 94.7 0.019 6.6E-07 50.7 3.6 26 6-31 18-43 (197)
272 3tau_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 51.1 3.4 26 6-31 7-32 (208)
273 3cm0_A Adenylate kinase; ATP-b 94.6 0.023 8E-07 49.2 3.9 27 6-32 3-29 (186)
274 1tev_A UMP-CMP kinase; ploop, 94.6 0.022 7.4E-07 49.7 3.6 27 6-32 2-28 (196)
275 1znw_A Guanylate kinase, GMP k 94.6 0.017 5.7E-07 51.4 2.8 24 8-31 21-44 (207)
276 1cke_A CK, MSSA, protein (cyti 94.5 0.023 8E-07 51.0 3.8 25 8-32 6-30 (227)
277 4gp7_A Metallophosphoesterase; 94.5 0.018 6E-07 49.6 2.7 21 8-28 10-30 (171)
278 2plr_A DTMP kinase, probable t 94.5 0.025 8.7E-07 50.0 3.9 28 6-33 3-30 (213)
279 2j41_A Guanylate kinase; GMP, 94.5 0.021 7.2E-07 50.4 3.3 25 6-30 5-29 (207)
280 2bbw_A Adenylate kinase 4, AK4 94.5 0.024 8.1E-07 51.9 3.7 28 7-34 27-54 (246)
281 3kb2_A SPBC2 prophage-derived 94.5 0.023 7.7E-07 48.5 3.4 24 9-32 3-26 (173)
282 2rhm_A Putative kinase; P-loop 94.4 0.028 9.6E-07 48.9 4.0 27 6-32 4-30 (193)
283 1z6g_A Guanylate kinase; struc 94.4 0.019 6.4E-07 51.7 2.8 24 7-30 23-46 (218)
284 1s96_A Guanylate kinase, GMP k 94.4 0.022 7.4E-07 51.3 3.2 26 6-31 15-40 (219)
285 3lw7_A Adenylate kinase relate 94.3 0.024 8.4E-07 48.2 3.3 25 8-33 2-26 (179)
286 4ido_A Atlastin-1; GTPase, GTP 94.3 0.14 4.6E-06 51.1 9.0 25 5-29 65-89 (457)
287 1qhx_A CPT, protein (chloramph 94.3 0.028 9.5E-07 48.3 3.6 24 8-31 4-27 (178)
288 3t61_A Gluconokinase; PSI-biol 94.3 0.025 8.7E-07 49.9 3.4 25 8-32 19-43 (202)
289 3trf_A Shikimate kinase, SK; a 94.2 0.026 9E-07 48.9 3.4 26 7-32 5-30 (185)
290 1nn5_A Similar to deoxythymidy 94.2 0.025 8.4E-07 50.2 3.2 26 5-30 7-32 (215)
291 3tlx_A Adenylate kinase 2; str 94.2 0.032 1.1E-06 51.0 3.9 29 5-33 27-55 (243)
292 3vaa_A Shikimate kinase, SK; s 94.2 0.029 9.8E-07 49.5 3.5 27 6-32 24-50 (199)
293 2qor_A Guanylate kinase; phosp 94.1 0.028 9.6E-07 49.8 3.4 26 6-31 11-36 (204)
294 3iij_A Coilin-interacting nucl 94.1 0.031 1.1E-06 48.2 3.5 28 5-32 9-36 (180)
295 1hyq_A MIND, cell division inh 94.1 0.14 4.9E-06 46.9 8.3 67 84-159 110-176 (263)
296 1kht_A Adenylate kinase; phosp 94.1 0.025 8.7E-07 49.1 2.9 26 7-32 3-28 (192)
297 3fb4_A Adenylate kinase; psych 94.0 0.031 1E-06 49.8 3.4 25 9-33 2-26 (216)
298 2bdt_A BH3686; alpha-beta prot 94.0 0.033 1.1E-06 48.5 3.5 23 8-30 3-25 (189)
299 2ph1_A Nucleotide-binding prot 94.0 0.081 2.8E-06 48.8 6.4 68 83-157 127-194 (262)
300 2qt1_A Nicotinamide riboside k 94.0 0.039 1.3E-06 48.8 4.0 26 5-30 19-44 (207)
301 3ug7_A Arsenical pump-driving 94.0 1.4 4.9E-05 42.3 15.5 79 109-196 237-317 (349)
302 1ex7_A Guanylate kinase; subst 94.0 0.029 1E-06 49.0 3.1 22 10-31 4-25 (186)
303 1htw_A HI0065; nucleotide-bind 93.9 0.037 1.3E-06 47.0 3.6 25 7-31 33-57 (158)
304 2rcn_A Probable GTPase ENGC; Y 93.9 0.028 9.5E-07 54.5 3.1 22 8-29 216-237 (358)
305 1ly1_A Polynucleotide kinase; 93.9 0.031 1E-06 48.0 3.1 22 8-29 3-24 (181)
306 1aky_A Adenylate kinase; ATP:A 93.9 0.034 1.2E-06 49.8 3.4 29 5-33 2-30 (220)
307 3dl0_A Adenylate kinase; phosp 93.9 0.036 1.2E-06 49.4 3.7 25 9-33 2-26 (216)
308 3kjh_A CO dehydrogenase/acetyl 93.9 0.034 1.2E-06 50.5 3.5 65 83-156 130-194 (254)
309 2jaq_A Deoxyguanosine kinase; 93.9 0.034 1.2E-06 48.8 3.4 24 9-32 2-25 (205)
310 1g3q_A MIND ATPase, cell divis 93.9 0.06 2E-06 48.6 5.1 68 83-159 110-177 (237)
311 2c95_A Adenylate kinase 1; tra 93.9 0.037 1.3E-06 48.2 3.6 27 6-32 8-34 (196)
312 3tif_A Uncharacterized ABC tra 93.8 0.029 1E-06 51.0 2.9 20 9-28 33-52 (235)
313 2v54_A DTMP kinase, thymidylat 93.8 0.033 1.1E-06 49.0 3.2 26 6-31 3-28 (204)
314 2pcj_A ABC transporter, lipopr 93.8 0.033 1.1E-06 50.3 3.1 20 9-28 32-51 (224)
315 2if2_A Dephospho-COA kinase; a 93.7 0.033 1.1E-06 49.1 3.1 22 8-29 2-23 (204)
316 1np6_A Molybdopterin-guanine d 93.7 0.039 1.4E-06 47.7 3.4 23 7-29 6-28 (174)
317 3aez_A Pantothenate kinase; tr 93.7 0.042 1.4E-06 52.3 3.9 26 5-30 88-113 (312)
318 2vli_A Antibiotic resistance p 93.7 0.028 9.6E-07 48.5 2.4 27 6-32 4-30 (183)
319 2v9p_A Replication protein E1; 93.7 0.035 1.2E-06 52.6 3.2 24 7-30 126-149 (305)
320 2wwf_A Thymidilate kinase, put 93.7 0.04 1.4E-06 48.8 3.5 26 5-30 8-33 (212)
321 1via_A Shikimate kinase; struc 93.7 0.036 1.2E-06 47.6 3.1 24 9-32 6-29 (175)
322 2jeo_A Uridine-cytidine kinase 93.6 0.04 1.4E-06 50.4 3.5 27 6-32 24-50 (245)
323 1ukz_A Uridylate kinase; trans 93.6 0.048 1.6E-06 48.0 3.9 29 5-33 13-41 (203)
324 1jjv_A Dephospho-COA kinase; P 93.6 0.037 1.3E-06 48.9 3.2 22 8-29 3-24 (206)
325 1y63_A LMAJ004144AAA protein; 93.6 0.048 1.6E-06 47.4 3.8 25 6-30 9-33 (184)
326 4e22_A Cytidylate kinase; P-lo 93.6 0.042 1.4E-06 50.5 3.5 28 7-34 27-54 (252)
327 3uie_A Adenylyl-sulfate kinase 93.5 0.041 1.4E-06 48.5 3.3 25 6-30 24-48 (200)
328 2onk_A Molybdate/tungstate ABC 93.4 0.039 1.3E-06 50.4 3.1 22 8-29 25-46 (240)
329 2cbz_A Multidrug resistance-as 93.4 0.035 1.2E-06 50.6 2.8 20 9-28 33-52 (237)
330 2cdn_A Adenylate kinase; phosp 93.4 0.049 1.7E-06 47.9 3.6 28 5-32 18-45 (201)
331 2yv5_A YJEQ protein; hydrolase 93.4 0.038 1.3E-06 52.3 3.1 21 8-28 166-186 (302)
332 1nks_A Adenylate kinase; therm 93.4 0.045 1.5E-06 47.5 3.3 25 8-32 2-26 (194)
333 3b85_A Phosphate starvation-in 93.4 0.035 1.2E-06 49.5 2.6 21 9-29 24-44 (208)
334 2eyu_A Twitching motility prot 93.4 0.047 1.6E-06 50.5 3.5 24 6-29 24-47 (261)
335 2f1r_A Molybdopterin-guanine d 93.4 0.023 7.9E-07 49.0 1.3 22 8-29 3-24 (171)
336 3tqc_A Pantothenate kinase; bi 93.4 0.046 1.6E-06 52.2 3.5 27 5-31 90-116 (321)
337 1xjc_A MOBB protein homolog; s 93.3 0.047 1.6E-06 46.9 3.2 23 7-29 4-26 (169)
338 2i3b_A HCR-ntpase, human cance 93.3 0.04 1.4E-06 48.3 2.7 21 9-29 3-23 (189)
339 2pze_A Cystic fibrosis transme 93.3 0.041 1.4E-06 49.8 2.9 20 9-28 36-55 (229)
340 3umf_A Adenylate kinase; rossm 93.3 0.067 2.3E-06 48.0 4.2 29 5-33 27-55 (217)
341 1mv5_A LMRA, multidrug resista 93.2 0.042 1.4E-06 50.2 2.9 22 8-29 29-50 (243)
342 2yvu_A Probable adenylyl-sulfa 93.2 0.053 1.8E-06 47.1 3.4 26 5-30 11-36 (186)
343 2bwj_A Adenylate kinase 5; pho 93.2 0.043 1.5E-06 48.0 2.9 26 7-32 12-37 (199)
344 4g1u_C Hemin import ATP-bindin 93.2 0.043 1.5E-06 50.9 3.0 20 9-28 39-58 (266)
345 1odf_A YGR205W, hypothetical 3 93.2 0.052 1.8E-06 51.1 3.5 27 4-30 28-54 (290)
346 1e4v_A Adenylate kinase; trans 93.1 0.055 1.9E-06 48.2 3.5 24 9-32 2-25 (214)
347 3gfo_A Cobalt import ATP-bindi 93.1 0.044 1.5E-06 51.2 2.9 20 9-28 36-55 (275)
348 2ff7_A Alpha-hemolysin translo 93.1 0.045 1.5E-06 50.2 2.9 21 9-29 37-57 (247)
349 1sgw_A Putative ABC transporte 93.1 0.043 1.5E-06 49.2 2.7 20 9-28 37-56 (214)
350 1g6h_A High-affinity branched- 93.1 0.045 1.5E-06 50.5 2.9 20 9-28 35-54 (257)
351 1b0u_A Histidine permease; ABC 93.1 0.046 1.6E-06 50.6 2.9 20 9-28 34-53 (262)
352 2d2e_A SUFC protein; ABC-ATPas 93.0 0.049 1.7E-06 50.1 3.1 21 9-29 31-51 (250)
353 3lnc_A Guanylate kinase, GMP k 93.0 0.03 1E-06 50.6 1.6 21 8-28 28-48 (231)
354 1rz3_A Hypothetical protein rb 93.0 0.059 2E-06 47.5 3.5 24 6-29 21-44 (201)
355 1vht_A Dephospho-COA kinase; s 93.0 0.055 1.9E-06 48.2 3.3 23 7-29 4-26 (218)
356 2ehv_A Hypothetical protein PH 93.0 0.046 1.6E-06 49.6 2.8 21 8-28 31-51 (251)
357 1ji0_A ABC transporter; ATP bi 93.0 0.048 1.6E-06 49.8 2.9 20 9-28 34-53 (240)
358 1zak_A Adenylate kinase; ATP:A 93.0 0.053 1.8E-06 48.5 3.2 27 7-33 5-31 (222)
359 2ghi_A Transport protein; mult 93.0 0.048 1.6E-06 50.5 2.9 21 9-29 48-68 (260)
360 2pt5_A Shikimate kinase, SK; a 92.9 0.061 2.1E-06 45.6 3.3 24 9-32 2-25 (168)
361 2olj_A Amino acid ABC transpor 92.9 0.05 1.7E-06 50.4 2.9 20 9-28 52-71 (263)
362 3r20_A Cytidylate kinase; stru 92.9 0.06 2.1E-06 48.8 3.3 28 6-33 8-35 (233)
363 3sr0_A Adenylate kinase; phosp 92.9 0.062 2.1E-06 47.8 3.4 26 9-34 2-27 (206)
364 1wcv_1 SOJ, segregation protei 92.8 0.34 1.2E-05 44.3 8.5 71 83-159 110-183 (257)
365 2qi9_C Vitamin B12 import ATP- 92.8 0.053 1.8E-06 49.8 2.9 20 9-28 28-47 (249)
366 2zu0_C Probable ATP-dependent 92.8 0.055 1.9E-06 50.2 3.1 21 9-29 48-68 (267)
367 4a74_A DNA repair and recombin 92.8 0.055 1.9E-06 48.4 3.0 22 8-29 26-47 (231)
368 1vpl_A ABC transporter, ATP-bi 92.8 0.053 1.8E-06 50.0 2.9 20 9-28 43-62 (256)
369 3be4_A Adenylate kinase; malar 92.7 0.068 2.3E-06 47.7 3.5 26 7-32 5-30 (217)
370 1uj2_A Uridine-cytidine kinase 92.7 0.071 2.4E-06 48.9 3.7 27 6-32 21-47 (252)
371 2ixe_A Antigen peptide transpo 92.7 0.055 1.9E-06 50.4 2.9 21 9-29 47-67 (271)
372 1u0l_A Probable GTPase ENGC; p 92.7 0.054 1.9E-06 51.2 2.9 22 8-29 170-191 (301)
373 3zvl_A Bifunctional polynucleo 92.7 0.33 1.1E-05 48.1 8.7 24 7-30 258-281 (416)
374 1sq5_A Pantothenate kinase; P- 92.7 0.075 2.6E-06 50.4 3.9 27 5-31 78-104 (308)
375 2yz2_A Putative ABC transporte 92.6 0.058 2E-06 50.1 2.9 20 9-28 35-54 (266)
376 2p5t_B PEZT; postsegregational 92.6 0.063 2.1E-06 49.3 3.1 27 5-31 30-56 (253)
377 2ihy_A ABC transporter, ATP-bi 92.6 0.058 2E-06 50.4 2.9 20 9-28 49-68 (279)
378 1gvn_B Zeta; postsegregational 92.6 0.076 2.6E-06 49.8 3.7 26 6-31 32-57 (287)
379 2nq2_C Hypothetical ABC transp 92.5 0.06 2E-06 49.6 2.9 20 9-28 33-52 (253)
380 2grj_A Dephospho-COA kinase; T 92.5 0.086 2.9E-06 46.3 3.8 27 6-32 11-37 (192)
381 1zuh_A Shikimate kinase; alpha 92.5 0.075 2.6E-06 45.1 3.3 25 8-32 8-32 (168)
382 2pez_A Bifunctional 3'-phospho 92.4 0.074 2.5E-06 45.8 3.2 24 6-29 4-27 (179)
383 2gza_A Type IV secretion syste 92.3 0.061 2.1E-06 52.3 2.9 22 8-29 176-197 (361)
384 2pbr_A DTMP kinase, thymidylat 92.3 0.07 2.4E-06 46.3 2.9 22 9-30 2-23 (195)
385 3ec2_A DNA replication protein 92.3 0.066 2.3E-06 46.1 2.7 23 7-29 38-60 (180)
386 3jvv_A Twitching mobility prot 92.2 0.074 2.5E-06 51.6 3.3 22 8-29 124-145 (356)
387 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.06 2E-06 51.7 2.6 23 8-30 172-194 (330)
388 2xb4_A Adenylate kinase; ATP-b 92.2 0.084 2.9E-06 47.4 3.4 24 9-32 2-25 (223)
389 3la6_A Tyrosine-protein kinase 92.2 0.24 8.1E-06 46.4 6.6 68 84-159 201-268 (286)
390 3nh6_A ATP-binding cassette SU 92.2 0.042 1.4E-06 52.1 1.4 22 8-29 81-102 (306)
391 1nij_A Hypothetical protein YJ 92.1 0.084 2.9E-06 50.3 3.4 24 7-30 4-27 (318)
392 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.079 2.7E-06 48.9 3.2 24 7-30 4-27 (260)
393 2iyv_A Shikimate kinase, SK; t 92.1 0.072 2.5E-06 46.0 2.8 24 9-32 4-27 (184)
394 2pjz_A Hypothetical protein ST 92.1 0.073 2.5E-06 49.3 2.9 21 9-29 32-52 (263)
395 1gtv_A TMK, thymidylate kinase 92.1 0.046 1.6E-06 48.4 1.5 22 9-30 2-23 (214)
396 1e6c_A Shikimate kinase; phosp 92.1 0.077 2.6E-06 45.2 2.9 25 8-32 3-27 (173)
397 2vp4_A Deoxynucleoside kinase; 92.0 0.08 2.7E-06 47.8 3.1 26 5-30 18-43 (230)
398 1ak2_A Adenylate kinase isoenz 92.0 0.095 3.2E-06 47.3 3.5 27 6-32 15-41 (233)
399 2bbs_A Cystic fibrosis transme 92.0 0.08 2.7E-06 49.8 3.1 21 8-28 65-85 (290)
400 3tui_C Methionine import ATP-b 91.9 0.075 2.5E-06 51.6 2.8 21 9-29 56-76 (366)
401 3kta_A Chromosome segregation 91.9 0.1 3.5E-06 44.9 3.6 24 9-32 28-51 (182)
402 3cwq_A Para family chromosome 91.9 0.11 3.9E-06 46.0 3.9 66 83-158 66-133 (209)
403 3d3q_A TRNA delta(2)-isopenten 91.9 0.1 3.5E-06 50.0 3.7 25 8-32 8-32 (340)
404 2ze6_A Isopentenyl transferase 91.9 0.1 3.6E-06 47.8 3.7 24 9-32 3-26 (253)
405 2kjq_A DNAA-related protein; s 91.8 0.08 2.7E-06 44.3 2.7 22 8-29 37-58 (149)
406 2ewv_A Twitching motility prot 91.8 0.094 3.2E-06 51.2 3.5 24 6-29 135-158 (372)
407 2z0h_A DTMP kinase, thymidylat 91.8 0.085 2.9E-06 45.9 2.9 22 9-30 2-23 (197)
408 2f6r_A COA synthase, bifunctio 91.8 0.1 3.5E-06 48.8 3.6 23 6-28 74-96 (281)
409 1lw7_A Transcriptional regulat 91.7 0.071 2.4E-06 51.9 2.5 25 7-31 170-194 (365)
410 3fvq_A Fe(3+) IONS import ATP- 91.7 0.087 3E-06 51.0 3.0 21 9-29 32-52 (359)
411 3foz_A TRNA delta(2)-isopenten 91.7 0.13 4.3E-06 48.7 4.0 28 5-32 8-35 (316)
412 1q3t_A Cytidylate kinase; nucl 91.6 0.11 3.9E-06 46.9 3.6 28 5-32 14-41 (236)
413 3bfv_A CAPA1, CAPB2, membrane 91.6 0.25 8.5E-06 45.8 5.9 68 84-159 191-258 (271)
414 3nwj_A ATSK2; P loop, shikimat 91.5 0.095 3.2E-06 48.1 3.0 27 7-33 48-74 (250)
415 4eaq_A DTMP kinase, thymidylat 91.4 0.14 4.8E-06 46.2 4.0 28 5-32 24-51 (229)
416 2oap_1 GSPE-2, type II secreti 91.3 0.085 2.9E-06 53.8 2.7 22 8-29 261-282 (511)
417 1z47_A CYSA, putative ABC-tran 91.2 0.097 3.3E-06 50.6 2.8 21 9-29 43-63 (355)
418 2oze_A ORF delta'; para, walke 91.2 0.46 1.6E-05 44.4 7.5 68 83-159 153-226 (298)
419 2yyz_A Sugar ABC transporter, 91.1 0.1 3.4E-06 50.6 2.8 21 9-29 31-51 (359)
420 3ake_A Cytidylate kinase; CMP 91.0 0.14 4.7E-06 45.0 3.5 24 9-32 4-27 (208)
421 1m7g_A Adenylylsulfate kinase; 91.0 0.13 4.5E-06 45.6 3.3 24 6-29 24-47 (211)
422 3rlf_A Maltose/maltodextrin im 91.0 0.11 3.6E-06 50.8 2.8 21 9-29 31-51 (381)
423 2it1_A 362AA long hypothetical 90.9 0.11 3.7E-06 50.5 2.8 21 9-29 31-51 (362)
424 1p9r_A General secretion pathw 90.9 0.13 4.5E-06 51.0 3.4 24 7-30 167-190 (418)
425 1g29_1 MALK, maltose transport 90.8 0.11 3.8E-06 50.6 2.8 21 9-29 31-51 (372)
426 3gmt_A Adenylate kinase; ssgci 90.8 0.14 4.9E-06 46.1 3.4 27 6-32 7-33 (230)
427 1v43_A Sugar-binding transport 90.8 0.11 3.9E-06 50.5 2.8 21 9-29 39-59 (372)
428 3ea0_A ATPase, para family; al 90.8 0.18 6.2E-06 45.5 4.1 67 84-159 118-186 (245)
429 3cio_A ETK, tyrosine-protein k 90.5 0.4 1.4E-05 45.1 6.4 68 84-159 213-280 (299)
430 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.14 4.6E-06 45.8 2.8 22 8-29 24-45 (235)
431 2x8a_A Nuclear valosin-contain 90.3 0.15 5.3E-06 47.3 3.2 24 8-31 45-68 (274)
432 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.14 5E-06 42.7 2.7 23 9-31 25-47 (149)
433 3gd7_A Fusion complex of cysti 90.2 0.15 5.2E-06 50.0 3.2 21 9-29 49-69 (390)
434 2b8t_A Thymidine kinase; deoxy 90.2 0.73 2.5E-05 41.3 7.5 22 8-29 13-34 (223)
435 2npi_A Protein CLP1; CLP1-PCF1 90.2 0.13 4.5E-06 51.6 2.8 22 8-29 139-160 (460)
436 2h92_A Cytidylate kinase; ross 90.1 0.16 5.4E-06 45.1 3.0 26 7-32 3-28 (219)
437 3crm_A TRNA delta(2)-isopenten 90.0 0.22 7.6E-06 47.4 4.1 24 8-31 6-29 (323)
438 3d31_A Sulfate/molybdate ABC t 89.9 0.097 3.3E-06 50.5 1.5 21 9-29 28-48 (348)
439 1a7j_A Phosphoribulokinase; tr 89.8 0.095 3.2E-06 49.3 1.4 27 6-32 4-30 (290)
440 1svm_A Large T antigen; AAA+ f 89.7 0.21 7E-06 48.8 3.7 25 6-30 168-192 (377)
441 1cr0_A DNA primase/helicase; R 89.6 0.18 6.3E-06 47.2 3.1 22 8-29 36-57 (296)
442 1ixz_A ATP-dependent metallopr 89.5 0.2 6.7E-06 45.8 3.2 23 8-30 50-72 (254)
443 1ihu_A Arsenical pump-driving 89.4 0.84 2.9E-05 47.3 8.3 151 4-177 5-263 (589)
444 1jbk_A CLPB protein; beta barr 89.4 0.23 7.9E-06 42.4 3.5 24 7-30 43-66 (195)
445 1zcb_A G alpha I/13; GTP-bindi 89.3 0.2 6.9E-06 48.6 3.3 23 5-27 31-53 (362)
446 2obl_A ESCN; ATPase, hydrolase 89.3 0.21 7.2E-06 48.2 3.4 23 8-30 72-94 (347)
447 1ltq_A Polynucleotide kinase; 89.3 0.2 6.7E-06 47.0 3.1 23 8-30 3-25 (301)
448 2cvh_A DNA repair and recombin 89.2 0.2 6.9E-06 44.3 3.0 22 8-29 21-42 (220)
449 3ozx_A RNAse L inhibitor; ATP 89.0 0.23 7.8E-06 50.9 3.6 25 5-29 23-47 (538)
450 3q9l_A Septum site-determining 89.0 0.3 1E-05 44.5 4.1 65 84-157 113-185 (260)
451 1oxx_K GLCV, glucose, ABC tran 89.0 0.098 3.4E-06 50.6 0.8 21 9-29 33-53 (353)
452 1p5z_B DCK, deoxycytidine kina 88.9 0.17 6E-06 46.5 2.4 26 6-31 23-48 (263)
453 2vhj_A Ntpase P4, P4; non- hyd 88.8 0.42 1.4E-05 45.4 5.0 21 9-29 125-145 (331)
454 1lv7_A FTSH; alpha/beta domain 88.7 0.27 9.2E-06 44.9 3.6 24 7-30 45-68 (257)
455 1n0w_A DNA repair protein RAD5 88.7 0.21 7.3E-06 44.9 2.8 22 8-29 25-46 (243)
456 3qf7_A RAD50; ABC-ATPase, ATPa 88.7 0.21 7.3E-06 48.5 3.0 21 10-30 26-46 (365)
457 3exa_A TRNA delta(2)-isopenten 88.5 0.29 1E-05 46.3 3.7 25 7-31 3-27 (322)
458 2xj4_A MIPZ; replication, cell 88.5 0.58 2E-05 43.6 5.8 35 84-120 103-137 (286)
459 1iy2_A ATP-dependent metallopr 88.5 0.25 8.7E-06 45.8 3.2 23 9-31 75-97 (278)
460 3euj_A Chromosome partition pr 88.4 0.23 8E-06 50.0 3.1 23 8-30 30-52 (483)
461 3b60_A Lipid A export ATP-bind 88.2 0.22 7.6E-06 51.6 2.9 22 8-29 370-391 (582)
462 1in4_A RUVB, holliday junction 88.2 0.26 8.8E-06 47.2 3.2 24 8-31 52-75 (334)
463 3fgn_A Dethiobiotin synthetase 88.0 13 0.00045 33.6 14.4 67 83-156 125-197 (251)
464 1yqt_A RNAse L inhibitor; ATP- 87.9 0.25 8.6E-06 50.7 3.1 22 8-29 48-69 (538)
465 2dpy_A FLII, flagellum-specifi 87.9 0.29 9.8E-06 48.8 3.4 23 8-30 158-180 (438)
466 3b5x_A Lipid A export ATP-bind 87.8 0.25 8.4E-06 51.3 3.0 22 8-29 370-391 (582)
467 3v9p_A DTMP kinase, thymidylat 87.7 0.27 9.1E-06 44.3 2.7 26 5-30 23-48 (227)
468 3io5_A Recombination and repai 87.6 3.5 0.00012 38.9 10.4 21 9-29 30-50 (333)
469 3tqf_A HPR(Ser) kinase; transf 87.4 0.35 1.2E-05 41.5 3.1 22 8-29 17-38 (181)
470 4a82_A Cystic fibrosis transme 87.4 0.2 6.9E-06 51.9 2.0 22 8-29 368-389 (578)
471 3lv8_A DTMP kinase, thymidylat 87.4 0.33 1.1E-05 44.0 3.2 27 4-30 24-50 (236)
472 3a8t_A Adenylate isopentenyltr 87.4 0.35 1.2E-05 46.2 3.5 25 8-32 41-65 (339)
473 1nlf_A Regulatory protein REPA 87.4 0.3 1E-05 45.3 3.0 22 8-29 31-52 (279)
474 2w58_A DNAI, primosome compone 87.4 0.34 1.2E-05 42.3 3.2 22 8-29 55-76 (202)
475 2ocp_A DGK, deoxyguanosine kin 87.4 0.34 1.2E-05 43.8 3.3 25 7-31 2-26 (241)
476 2qmh_A HPR kinase/phosphorylas 87.3 0.35 1.2E-05 42.5 3.1 22 8-29 35-56 (205)
477 2p65_A Hypothetical protein PF 87.2 0.29 9.9E-06 41.6 2.6 24 7-30 43-66 (187)
478 3bos_A Putative DNA replicatio 87.1 0.35 1.2E-05 43.2 3.2 24 6-29 51-74 (242)
479 3qf4_B Uncharacterized ABC tra 87.1 0.24 8.1E-06 51.6 2.3 22 8-29 382-403 (598)
480 2yl4_A ATP-binding cassette SU 87.0 0.23 7.9E-06 51.7 2.1 22 8-29 371-392 (595)
481 1byi_A Dethiobiotin synthase; 86.7 1.8 6E-05 38.2 7.7 69 83-158 107-180 (224)
482 3j16_B RLI1P; ribosome recycli 86.6 0.33 1.1E-05 50.5 3.1 22 8-29 104-125 (608)
483 1yqt_A RNAse L inhibitor; ATP- 86.6 0.33 1.1E-05 49.7 3.1 22 8-29 313-334 (538)
484 1xp8_A RECA protein, recombina 86.6 1.8 6.1E-05 41.9 8.1 21 9-29 76-96 (366)
485 3qf4_A ABC transporter, ATP-bi 86.6 0.25 8.5E-06 51.3 2.1 22 8-29 370-391 (587)
486 3t15_A Ribulose bisphosphate c 86.4 0.56 1.9E-05 43.9 4.3 27 5-31 34-60 (293)
487 2dr3_A UPF0273 protein PH0284; 86.3 0.41 1.4E-05 43.0 3.2 22 8-29 24-45 (247)
488 1tue_A Replication protein E1; 86.3 0.37 1.2E-05 42.6 2.7 23 8-30 59-81 (212)
489 3qks_A DNA double-strand break 86.1 0.35 1.2E-05 42.7 2.6 25 9-33 25-49 (203)
490 3ozx_A RNAse L inhibitor; ATP 86.1 0.35 1.2E-05 49.6 2.9 21 9-29 296-316 (538)
491 2ga8_A Hypothetical 39.9 kDa p 86.1 0.42 1.5E-05 46.0 3.3 25 6-30 23-47 (359)
492 3bk7_A ABC transporter ATP-bin 86.0 0.35 1.2E-05 50.3 2.9 22 8-29 118-139 (607)
493 4edh_A DTMP kinase, thymidylat 85.7 0.46 1.6E-05 42.3 3.2 26 5-30 4-29 (213)
494 3syl_A Protein CBBX; photosynt 85.7 0.6 2E-05 43.7 4.1 26 4-29 64-89 (309)
495 3bk7_A ABC transporter ATP-bin 85.7 0.39 1.3E-05 49.9 3.1 21 9-29 384-404 (607)
496 3eph_A TRNA isopentenyltransfe 85.6 0.54 1.8E-05 46.1 3.8 25 7-31 2-26 (409)
497 3cf0_A Transitional endoplasmi 85.5 0.51 1.8E-05 44.3 3.6 26 6-31 48-73 (301)
498 3b9p_A CG5977-PA, isoform A; A 85.5 0.52 1.8E-05 43.9 3.5 25 6-30 53-77 (297)
499 3h4m_A Proteasome-activating n 85.2 0.56 1.9E-05 43.4 3.6 25 6-30 50-74 (285)
500 2qz4_A Paraplegin; AAA+, SPG7, 85.0 0.55 1.9E-05 42.7 3.5 25 6-30 38-62 (262)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=5.3e-84 Score=657.10 Aligned_cols=424 Identities=39% Similarity=0.688 Sum_probs=404.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++++||+++||+|+|||||+++|++.++.+..+.++++.+++.+.|++++.++|++|..++|+++|+|++..+..+++.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|.++|..+++.+|++||||||++|.++.+++..+|+++|+.++..+++|++|+|+||||++..+|+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 99999999999999999999999999999999999999988888877899999999999999989999999999877799
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCc-eeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCC
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPA-TVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPT 242 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~-~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~ 242 (459)
+.+++++.+++..+++.+|+.+. +++++|+||++|+|+.+....++||.| ..|++.|+.+.++.+..
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g------------~~L~~~l~~i~~~~~~~ 241 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIG------------LPFIPYLDNLPNFNRSV 241 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCc------------hHHHHHHHhCCCCccCC
Confidence 99999999999999999998653 588999999999999999999999975 88999999988887888
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcce
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 322 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~ 322 (459)
++|++|+|+++|+ +.|++++|+|.+|+|++||.|.++|++.+++|++|++++.++++|.|||+|+++|+|++..++++
T Consensus 242 ~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~r 319 (439)
T 3j2k_7 242 DGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILP 319 (439)
T ss_pred CCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCC
Confidence 9999999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEE
Q psy13961 323 GFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAII 402 (459)
Q Consensus 323 G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v 402 (459)
|||||+++. ++..+++|+|+|.||+++.+|.+||+|++|||+.+++|+|..|.+++|.+||+..+.+|++|+.||.+.|
T Consensus 320 G~vl~~~~~-~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v 398 (439)
T 3j2k_7 320 GFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIA 398 (439)
T ss_pred cEEecCCCC-CCceeeEEEEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEE
Confidence 999999875 6677899999999999988899999999999999999999999999999999988889999999999999
Q ss_pred EEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 403 VLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 403 ~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
+|++.+|+|+|+|++|+.+|||+|||+++|+|+|+|++|.
T Consensus 399 ~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 399 RLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 9999999999999999999999999999999999999875
No 2
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=9.6e-82 Score=643.85 Aligned_cols=442 Identities=79% Similarity=1.271 Sum_probs=414.7
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|+..++.++|+++||+|+|||||+++|++..+.++.+.+.++..++.+.|++++.+++++|..++|+++|+|++..+..+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
++.++.++|||||||++|.+++..+++.+|++|||||++++.++.+|+..+|+++|+.++..+++|++|+|+||||+.+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~- 159 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK- 159 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT-
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccccc-
Confidence 9999999999999999999999999999999999999998877777877789999999999999988999999999985
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
|++++++++.++++.+++.+++.+++++++|+||++|+|+.+.+..++||++|......|...|..|+++|+.+.||.+
T Consensus 160 -~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 160 -WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 7778889999999999998888655689999999999999998888999999888776664446789999999888888
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCc
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 320 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i 320 (459)
..+.|++|+|+++|+++|.|+|++|+|++|.+++||+|.+.|.+..++|++|++++.++++|.|||+|++.|++++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEE
Q psy13961 321 RRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400 (459)
Q Consensus 321 ~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 400 (459)
++||+|++++..++.++++|+|++.||+++.+|.+||+|++|+|+.+++|+|..|.+++|+++++..+++|++|++||.+
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~ 398 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAA 398 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEE
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEE
Confidence 99999999875578889999999999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCC
Q psy13961 401 IIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNH 444 (459)
Q Consensus 401 ~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~ 444 (459)
.|+|++.+|+|+|+|++|+.+|||+|||+++|+|+|+|+++.+.
T Consensus 399 ~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 399 LVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp EEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999865
No 3
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.2e-78 Score=618.18 Aligned_cols=428 Identities=53% Similarity=0.933 Sum_probs=390.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++||+|+|||||+++|++..+.++++.+.++..++.+.|++++.+++++|..++|+++|+|++..+..+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|..++.++++.+|++|+|+|++++.|+..+...+|+++|+.++..+++|++|+++||||+.+.+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998776665566799999999999999778999999999877688
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCCCC
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTE 243 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~~ 243 (459)
+++++.+.++++.+++.+++.+.+++++|+||++|+|+.+.+..++||+| +.|+++|+.+.||.+..+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g------------~~Ll~~l~~~~~p~~~~~ 230 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG------------PTLEEYLDQLELPPKPVD 230 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCS------------CCHHHHHTTCCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccc------------hhHHHHHhccCCCCCCCC
Confidence 88999999999999999888666689999999999999998888999975 789999998877776678
Q ss_pred CCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCccee
Q psy13961 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323 (459)
Q Consensus 244 ~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G 323 (459)
+|++++|+++|++++.|++++|+|.+|+|++||.|++.|.+...+|++|++++.++++|.|||+|++.|++++..++++|
T Consensus 231 ~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G 310 (435)
T 1jny_A 231 KPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRG 310 (435)
T ss_dssp SCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTT
T ss_pred CCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEE
Q psy13961 324 FVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIV 403 (459)
Q Consensus 324 ~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~ 403 (459)
|+|++++. ++..+.+|+|++.||+++.+|.+||++++|+|+.+++|+|..+.+++|+++++..+++|++|++||.+.|+
T Consensus 311 d~l~~~~~-~~~~~~~f~a~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~ 389 (435)
T 1jny_A 311 DVVGHPNN-PPTVADEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVK 389 (435)
T ss_dssp CEEECTTS-CCCEESEEEEEEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEE
T ss_pred cEecCCCC-CceEeEEEEEEEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEE
Confidence 99998754 67789999999999999899999999999999999999999999999999999888899999999999999
Q ss_pred EEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCC
Q psy13961 404 LVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNH 444 (459)
Q Consensus 404 l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~ 444 (459)
|++.+|+|+++|.+|+.+|||+|||+++|+|+|+|+++.+.
T Consensus 390 ~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 390 FKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp EEESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EEECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 99999999999999999999999999999999999998753
No 4
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.6e-77 Score=617.71 Aligned_cols=428 Identities=30% Similarity=0.533 Sum_probs=365.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|++..+.++.+.+.++.+++.+.|++++.+++++|....|+++|+|++..+..+++.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|..++..+++.+|++|||||++++.++.++...+|+++|+.++..++++++|+|+||||+.+ |+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~--~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT--TC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc--ch
Confidence 9999999999999999999999999999999999999988777766779999999999999887999999999986 78
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCC---CCCccccccccccCCCChhhHHHhccccC---C
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK---MPWFKGWAIERKEGKADGKCLIEALDAIL---P 237 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~---~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~---~ 237 (459)
+.+++++.+++..+++.+++.+..++++|+||++|+|+.+.+.. ++||+| ++|++.|+.+. |
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g------------~~L~~~L~~i~~~~~ 255 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNG------------PNLMSTLENAAFKIS 255 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCS------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCC------------CCHHHHHHHHHhhcc
Confidence 89999999999999999998777789999999999999887765 899986 56666666552 2
Q ss_pred ---CCCCCCCCeeEEeEEEEEeC---CceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEecc--------ccceeEc
Q psy13961 238 ---PSRPTEKPLRLPLQDVYKIG---GIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHH--------EALQEAV 303 (459)
Q Consensus 238 ---~~~~~~~p~~~~i~~v~~~~---~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~--------~~v~~a~ 303 (459)
|.+..+.|++|+|+++|+++ +.|+|++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.
T Consensus 256 ~~~p~~~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~ 335 (483)
T 3p26_A 256 KENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAI 335 (483)
T ss_dssp HHHTTCCSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEE
T ss_pred cccccccCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEEC
Confidence 44567899999999999988 589999999999999999999999999999999999984 8999999
Q ss_pred CCCeEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCC
Q psy13961 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRT 383 (459)
Q Consensus 304 aGd~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~ 383 (459)
|||+|++.|++++..++++||||++++.+++.+++.|+|+|.||+++.+|.+||++++|||+.+++|+|..|.+++|+++
T Consensus 336 aG~~v~~~l~~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~ 415 (483)
T 3p26_A 336 KGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGN 415 (483)
T ss_dssp TTCEEEEEEESCCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETT
T ss_pred CCCEEEEEEEecccccCCceEEEEcCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCC
Confidence 99999999999888999999999998765788999999999999999999999999999999999999999999999999
Q ss_pred CcccccCccccCCCCEEEEEEEe---CCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCCCc
Q psy13961 384 GKTTEENPKALKSGDAAIIVLVP---SKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHGN 446 (459)
Q Consensus 384 ~~~~~~~~~~l~~g~~~~v~l~l---~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~~~ 446 (459)
++. +++|++|++||.|.|+|++ .+|+|+|+|++|+.+|||+|||.|+|||+|+|+++..+.+
T Consensus 416 ~~~-~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~~~~ 480 (483)
T 3p26_A 416 TAS-KKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQHHH 480 (483)
T ss_dssp EEC-CSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC---
T ss_pred ccc-ccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEeccccc
Confidence 876 6689999999999999999 8899999999999999999999999999999999886654
No 5
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=3.5e-78 Score=618.95 Aligned_cols=422 Identities=38% Similarity=0.679 Sum_probs=355.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++||+|+|||||+++|++.++.++.+.+.++.+++.+.|++++.+++++|..++|+++|+|++..+..++++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46678999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|.++|.++++.+|++|||||+++|.++.+|+..+|+++|+.++..+++|++|||+||||+.+.+|+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999999999999999999999999999888888877899999999999999989999999999776788
Q ss_pred HHHHHHHHHHHHhhhhhc-CcC-CceeeEeecCCCCCCcccccc--CCCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 164 EARFEEIKKEVSGYIKKI-GYN-PATVAFVPISGWHGDNMLEVS--DKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~-g~~-~~~~~~i~iSa~~g~~i~~~~--~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
+++++++.+++..+++.+ |+. ..+++++|+||++|+|+.+.. ..++||.| ..|++.|+.+.+|.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g------------~~L~~~l~~i~~~~ 267 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG------------PSLLEYLDSMTHLE 267 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCS------------CCHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccc------------hhHHHHHHhCCCCc
Confidence 899999999999999887 874 236889999999999998876 36899976 67999998877776
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec-cccceeEcCCCeEEEEEccCccc
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH-HEALQEAVPGDNVGFNVKNVSVK 318 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~-~~~v~~a~aGd~v~l~l~~~~~~ 318 (459)
+..++|++++|+++|+ +.|+|++|+|.+|+|++||.|.++|.+...+|++|+++ +.++++|.|||+|++.|++ +..
T Consensus 268 ~~~~~p~~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~ 344 (467)
T 1r5b_A 268 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDS 344 (467)
T ss_dssp HHHTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCT
T ss_pred CCCCCCcEEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHh
Confidence 6778999999999998 57899999999999999999999999999999999998 8999999999999999998 889
Q ss_pred CcceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCC
Q psy13961 319 ELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGD 398 (459)
Q Consensus 319 ~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~ 398 (459)
++++||+|++++. ++.++++|+|++.||+++.+|.+||+|++|+|+.+++|++..|.+++|+ +++..+++|++|++||
T Consensus 345 ~i~rG~vl~~~~~-~~~~~~~f~a~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~ 422 (467)
T 1r5b_A 345 DVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGM 422 (467)
T ss_dssp TCCTTCEEECSSS-CCCEEEEEEEEEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTC
T ss_pred hCCceEEEeCCCC-CCccceEEEEEEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCC
Confidence 9999999998764 6788999999999999988999999999999999999999999999999 8888777899999999
Q ss_pred EEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 399 AAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 399 ~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
.+.|+|++.+|+|+++|++|+.+|||+|||+++|+|+|+|+++.
T Consensus 423 ~~~v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 423 KIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp BCCEEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999985
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-76 Score=622.95 Aligned_cols=424 Identities=30% Similarity=0.532 Sum_probs=395.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++||+|+|||||+++|++..+.+..+.+.++.+++.+.|++++.++|++|..+.|+.+|+|++..+..+++.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|.+++..+++.+|++|+|||++.|.++.++...+|+++|+.++..+++|++|+|+||||+++ |+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~--~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT--TC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc--hh
Confidence 9999999999999999999999999999999999999877777777789999999999999998999999999987 78
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCC---CCCccccccccccCCCChhhHHHhccccC---C
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK---MPWFKGWAIERKEGKADGKCLIEALDAIL---P 237 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~---~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~---~ 237 (459)
+.+++++.+++..+++.+|+.+..++++|+||++|+|+.+.+.. ++||+| ++|++.|..+. |
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g------------~~L~~~L~~l~~~~p 389 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNG------------PNLMSTLENAAFKIS 389 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCS------------CCHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccC------------CcHHHHHHHHhhccc
Confidence 89999999999999999998766789999999999999887643 899986 67877777662 2
Q ss_pred ---CCCCCCCCeeEEeEEEEEeC---CceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEecc--------ccceeEc
Q psy13961 238 ---PSRPTEKPLRLPLQDVYKIG---GIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHH--------EALQEAV 303 (459)
Q Consensus 238 ---~~~~~~~p~~~~i~~v~~~~---~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~--------~~v~~a~ 303 (459)
|.+..+.|++|+|+++|+++ +.|+|++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.
T Consensus 390 ~~~p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~ 469 (611)
T 3izq_1 390 KENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAI 469 (611)
T ss_dssp CSSSCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEE
T ss_pred ccCcccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceec
Confidence 33557899999999999998 589999999999999999999999999999999999984 8999999
Q ss_pred CCCeEEEEEccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCC
Q psy13961 304 PGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRT 383 (459)
Q Consensus 304 aGd~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~ 383 (459)
|||+|++.|++++..++++|||||+++..++.+++.|+|+|.||+++.+|.+||++++|||+.+++|+|..|.+++|.+|
T Consensus 470 aGd~v~l~l~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t 549 (611)
T 3izq_1 470 KGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGN 549 (611)
T ss_dssp TTCEEEEEESSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCC
T ss_pred CCCcceEEeeeccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccc
Confidence 99999999999988999999999998765788899999999999999999999999999999999999999999999999
Q ss_pred CcccccCccccCCCCEEEEEEEe---CCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 384 GKTTEENPKALKSGDAAIIVLVP---SKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 384 ~~~~~~~~~~l~~g~~~~v~l~l---~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
++. +++|++|++||.|.|+|++ .+|+|+|+|++++.+|||+||+.++|||+|+|++|.
T Consensus 550 ~~~-~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 550 TAS-KKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CBC-TTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred ccc-ccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 987 6789999999999999999 789999999999999999999999999999999875
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-76 Score=616.50 Aligned_cols=414 Identities=38% Similarity=0.629 Sum_probs=329.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.+||+++||+|+|||||+++|++.++.+..+.+.++.+.+.+.|++++.++|++|..++|+++|+|++..+..+++.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|.++|..+++.+|++|||||++.|.++.++...+|+++|+.++..+++|++|+|+||||+++ |+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~--~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT--TC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc--cc
Confidence 9999999999999999999999999999999999999988888855679999999999999998999999999986 77
Q ss_pred HHHHHHHHHHHHhhh-hhcCcCCceeeEeecCCCCCCccccccC--CCCCccccccccccCCCChhhHHHhccccCCCCC
Q psy13961 164 EARFEEIKKEVSGYI-KKIGYNPATVAFVPISGWHGDNMLEVSD--KMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l-~~~g~~~~~~~~i~iSa~~g~~i~~~~~--~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~ 240 (459)
+.+++++.+++..++ +.+|+.+.+++++|+||++|+|+.+.+. .++||.| +.|+++|..+.||.+
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g------------~~Lle~l~~~~pp~~ 399 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPPEK 399 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCS------------CCHHHHHHTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccch------------HHHHHHHHhhccccc
Confidence 889999999999999 8889877788999999999999988765 5899975 799999999998888
Q ss_pred CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccce-eEcCCCeEEEEEccCcccC
Q psy13961 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 241 ~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~-~a~aGd~v~l~l~~~~~~~ 319 (459)
..+.|++|+|+++|++ +.|++++|+|.+|+|++||.|.++|.+...+|++|++++.+++ +|.|||+|++.|++++..+
T Consensus 400 ~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~ 478 (592)
T 3mca_A 400 PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQ 478 (592)
T ss_dssp TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGG
T ss_pred cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccc
Confidence 8899999999999999 9999999999999999999999999999999999999999999 9999999999999998899
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCE
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDA 399 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~ 399 (459)
+++|||||+++. ++.+++.|+|++.||+++.||.+||++++||||.+++|+| .|.+. .++++++|++||.
T Consensus 479 i~rG~vl~~~~~-~~~~~~~f~a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i-~l~~~--------~~~~~~~l~~gd~ 548 (592)
T 3mca_A 479 LRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSL-KIVTV--------NNKRSRHIASRKR 548 (592)
T ss_dssp CCTTCEEECSSS-CCEEESEEEEEEEECSCSSCEETTEEEEEECSSCEEEEEE-EEEES--------SSSCCSEECSSCE
T ss_pred cceEEEeccCCC-CccccCeEEEEEEEECCCccCCCCCEEEEEEcCcEEEEEE-EEEec--------cccchhccCCCCE
Confidence 999999999764 6778999999999999999999999999999999999999 77651 2346899999999
Q ss_pred EEEEEE-eCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 400 AIIVLV-PSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 400 ~~v~l~-l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
+.|+|+ +.+|+|+|+|++|+.+|||+||+.++|||+|+|++|.
T Consensus 549 ~~v~l~fl~~p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 549 ALVRISFLDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EEEEEEESSSCEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEEEEECCCcEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 999999 9999999999999999999999999999999999873
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=7.4e-71 Score=561.06 Aligned_cols=410 Identities=30% Similarity=0.483 Sum_probs=353.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCC--CcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
.++.++|+++||+|+|||||+++|++..+.+..+.+.++...+...|. ..+.+++.+|..++|+++|+|++..+..++
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 456789999999999999999999998888776655555444444443 456777889999999999999999999999
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+.++.++|||||||++|.+++..+++.+|++|||+|++++.++ |+++|+.++..+++|++|+|+||+|+.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-------qt~~~l~~~~~~~~~~iIvviNK~Dl~~-- 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-------QTRRHSYIASLLGIKHIVVAINKMDLNG-- 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-------HHHHHHHHHHHTTCCEEEEEEECTTTTT--
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEEcCcCCc--
Confidence 9999999999999999999999999999999999999988654 9999999999999987999999999986
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP 241 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~ 241 (459)
|++++++++.+++..+++.+++....++++++||++|+|+.+....++||.| +.|++.|..+.++.+.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g------------~~L~~~l~~i~~~~~~ 239 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAG------------QSLMEILETVEIASDR 239 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCS------------CCTTHHHHHSCCTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccC------------chHHHHHhcCCCcccC
Confidence 6677788888899998888875445789999999999999999999999975 6788888887777777
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
.+.|++++|+++|+..+.|+.+.|+|.+|+|++||.|.++|++...+|++|++++.++++|.|||+|++.+.+ ..+++
T Consensus 240 ~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~ 317 (434)
T 1zun_B 240 NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDIS 317 (434)
T ss_dssp CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCC
T ss_pred CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccC
Confidence 7899999999999988788889999999999999999999999999999999999999999999999999875 56899
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
+||+|++++. +|.++++|+|++.||+ +.++.+||++++|+|+.++.|+|..+.+++|.++++. +++++|++||.+.
T Consensus 318 ~G~~l~~~~~-~~~~~~~f~a~~~~l~-~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~--~~~~~l~~~d~~~ 393 (434)
T 1zun_B 318 RGDLLVHADN-VPQVSDAFDAMLVWMA-EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEE--GPASSLQLNEIGR 393 (434)
T ss_dssp TTCEEEETTS-CCCEEEEEEEEEEECC-SSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCC--CCCSCBCTTCEEE
T ss_pred CccEEECCCC-CCCcccEEEEEEEEec-cccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccc--cCccEeCCCCEEE
Confidence 9999999875 6778999999999996 5789999999999999999999999999999999873 5789999999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEEC--CceEEEEEEEe
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRDM--RQTVAVGVIKV 440 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd~--~~tva~G~V~~ 440 (459)
|+|++++|+|+++|.+|+.+|||+|||. ++|||+|+|++
T Consensus 394 v~~~~~~p~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 394 VKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp EEEEEEEEEECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEECCeEEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 9999999999999999999999999986 78999999974
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=4.7e-65 Score=512.52 Aligned_cols=380 Identities=33% Similarity=0.507 Sum_probs=330.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
|++++|+++||+|+|||||+++|+... .+.|+..+...+.+|..++|+++|+|++..+..+++.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH---------------HHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChh---------------hhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 578999999999999999999997531 12333333323347888889999999999988898888
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|||||||++|..++.++++.+|++|||||++++.++ |+++|+.+++.+++|++++++||||+.+ ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-------qt~e~l~~~~~~~vp~iivviNK~Dl~~---~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLARQIGVEHVVVYVNKADAVQ---DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-------HHHHHHHHHHHTTCCCEEEEEECGGGCS---CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCCeEEEEEECcccCC---CH
Confidence 9999999999999999999999999999999999988654 9999999999999998788999999984 24
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCCCC
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPTE 243 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~~~ 243 (459)
+.++.+.++++++++.+++.++.++++++||++|+|. ..++||.+ ...+|+++|.+.+| |.+..+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~----~~~~~~~g----------~i~~Ll~~l~~~~p~p~~~~~ 201 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ----RDPELGLK----------SVQKLLDAVDTYIPVPTRDLE 201 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT----CCTTTTHH----------HHHHHHHHHHHHSCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc----cCCCccCC----------cHHHHHHHHHHhCCCCCCCCC
Confidence 5667778888889988888656789999999998873 34789863 12689999988665 556678
Q ss_pred CCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 244 ~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
+|++++|+++|++++.|+|++|+|.+|+|++||.|.+.|.+ .+++|++|++++.++++|.|||+|++.|++++..+++
T Consensus 202 ~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~ 281 (397)
T 1d2e_A 202 KPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLR 281 (397)
T ss_dssp SCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCC
T ss_pred CcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccC
Confidence 99999999999999999999999999999999999998875 7899999999999999999999999999999889999
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCC-----CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCC
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHP-----GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKS 396 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~-----~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~ 396 (459)
+||+|++++ ++.++++|+|++.||+++ .++.+||++++|+++.+++|+|. +. +.+.++++
T Consensus 282 ~G~~l~~~~--~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------------~~~~~l~~ 346 (397)
T 1d2e_A 282 RGLVMAKPG--SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------------PGKELAMP 346 (397)
T ss_dssp TTCEEESTT--SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------------SSCCCBCT
T ss_pred ceeEEeCCC--CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------------CCcccccC
Confidence 999999876 456799999999999874 68999999999999999999997 32 13678999
Q ss_pred CCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCC
Q psy13961 397 GDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNH 444 (459)
Q Consensus 397 g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~ 444 (459)
||.+.|+|+|.+|+|++++ +||+||++++|+|+|+|+++.+.
T Consensus 347 ~~~~~v~~~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 347 GEDLKLTLILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp TCEEEEEEEEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEEEECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 9999999999999999876 49999999999999999998764
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.6e-64 Score=510.31 Aligned_cols=383 Identities=34% Similarity=0.504 Sum_probs=331.4
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCC-CcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK-GSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~-~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
..++.++|+++||+|+|||||+++|+... .+.|+ +.+...+.+|..++|+++|+|++.....++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 71 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVA---------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE 71 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHH---------------HHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhh---------------hhcCccccccchhhccCCHHHHHcCCCEEeeeeEec
Confidence 35678999999999999999999997531 11232 222222357899999999999999888899
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+.++.++|||||||++|..++.++++.+|++|+|+|++++.++ |+++|+.++..+++|++++++||+|+.+
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-------qt~~~l~~~~~~~ip~iivviNK~Dl~~-- 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD-- 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-------HHHHHHHHHHHTTCCCEEEEEECGGGCC--
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCEEEEEEECccccC--
Confidence 8889999999999999999999999999999999999988654 9999999999999998889999999984
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccccc-----CCCCCccccccccccCCCChhhHHHhccccC
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVS-----DKMPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~-----~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
+++.++.+.+++..+++.+++...+++++++||++|+|+.+.+ ..++||.+ ..+|+++|.+++
T Consensus 143 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~-----------i~~Ll~~l~~~l 210 (405)
T 2c78_A 143 -DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK-----------IWELLDAIDEYI 210 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHH-----------HHHHHHHHHHHS
T ss_pred -cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCccccc-----------HHHHHHHHHhhc
Confidence 2456677778888888888876556889999999999876543 24678853 268999998866
Q ss_pred C-CCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEeccccceeEcCCCeEEEEE
Q psy13961 237 P-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEMHHEALQEAVPGDNVGFNV 312 (459)
Q Consensus 237 ~-~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~~~~~v~~a~aGd~v~l~l 312 (459)
| |.+..++|++++|+++|++++.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|++.|
T Consensus 211 p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l 290 (405)
T 2c78_A 211 PTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLL 290 (405)
T ss_dssp CCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEE
T ss_pred CCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEE
Confidence 5 55667899999999999999999999999999999999999999987 6899999999999999999999999999
Q ss_pred ccCcccCcceeEEEccCCCCCCcccceEEEEEEEecCC-----CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCccc
Q psy13961 313 KNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHP-----GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTT 387 (459)
Q Consensus 313 ~~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~-----~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 387 (459)
++++..++++||+|++++ ++.++++|+|++.||+++ .+|.+||++++|+++.+++|+|. +.
T Consensus 291 ~g~~~~~i~~G~~l~~~~--~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~----------- 356 (405)
T 2c78_A 291 RGVSREEVERGQVLAKPG--SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP----------- 356 (405)
T ss_dssp SSCCTTTCCTTCEEESTT--SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC-----------
T ss_pred CCCcHhhcCceEEEEcCC--CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec-----------
Confidence 999889999999999876 467799999999999853 68999999999999999999998 42
Q ss_pred ccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeec
Q psy13961 388 EENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNN 442 (459)
Q Consensus 388 ~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~ 442 (459)
+.++++++||.+.|+|++.+|+|+++| +||+||++++|+|+|+|+++.
T Consensus 357 -~~~~~l~~~~~~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 357 -PGVEMVMPGDNVTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp -TTCCCBCTTCEEEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEEC
T ss_pred -cCccccCCCCEEEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEecc
Confidence 135789999999999999999999987 499999999999999999875
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=5.1e-60 Score=510.89 Aligned_cols=381 Identities=32% Similarity=0.480 Sum_probs=315.5
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
..++.++|+++||+|+|||||+++|+... .+.|++.+...+.+|..++|+++|+|++.....+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~---------------~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVL---------------AKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHH---------------HHHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhh---------------ccccccccccccccccccccccCceeEEEEEEEEcC
Confidence 35678999999999999999999997531 112333322223578889999999999999888998
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~ 162 (459)
.++.++|||||||++|..++.++++.+|++|||||++++.++ |+++|+.++..+++|++|+|+||||+.+
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-------QTrEhL~ll~~lgIP~IIVVINKiDLv~--- 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVD--- 426 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-------THHHHHHHHHHHTCSCEEEEEECCTTCC---
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-------HHHHHHHHHHHcCCCeEEEEEeeccccc---
Confidence 899999999999999999999999999999999999988654 9999999999999998889999999985
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-CCCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRP 241 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~~~~ 241 (459)
+++.++.+.+++..+++.+++....++++++||++|.|- .++||.| ..+|++.|.+.+| |.+.
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng-----~~~w~eG-----------I~eLleaL~~~Ip~P~r~ 490 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG-----DAEWEAK-----------ILELAGFLDSYIPEPERA 490 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC-----CHHHHHH-----------HHHHHHHHHHTSCCCCCG
T ss_pred chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC-----Ccccccc-----------chhhHhHHhhhcCCCccc
Confidence 245677788889999988888666789999999999542 3468864 2789999988665 4556
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC--eEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN--LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~--~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
.++|++++|+++|++++.|+|++|+|.+|+|++||.|.+.|.+ .+++|++|++++.++++|.|||+|++.|++++..+
T Consensus 491 ~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~d 570 (1289)
T 3avx_A 491 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREE 570 (1289)
T ss_dssp GGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGG
T ss_pred cccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhc
Confidence 6899999999999999999999999999999999999999987 78999999999999999999999999999998999
Q ss_pred cceeEEEccCCCCCCcccceEEEEEEEecC-----CCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCcccc
Q psy13961 320 LRRGFVAGDSKASPPKATQDFTAQVIVLNH-----PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKAL 394 (459)
Q Consensus 320 i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~-----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l 394 (459)
+++||+|++++. +.++++|+|++.||++ +.++.+||+|++|+++.+++|+|. +. +.++++
T Consensus 571 I~RGdVL~~~~~--~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L 635 (1289)
T 3avx_A 571 IERGQVLAKPGT--IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMV 635 (1289)
T ss_dssp CCTTCEEESTTS--CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCB
T ss_pred CCcccEEecCCC--CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccc
Confidence 999999998763 5679999999999985 368999999999999999999997 31 136789
Q ss_pred CCCCEEEEEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCCC
Q psy13961 395 KSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNHG 445 (459)
Q Consensus 395 ~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~~ 445 (459)
++||.+.|+|++.+|+|++++ +||+||++++|+|+|+|+++.+..
T Consensus 636 ~~Gd~a~V~L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 636 MPGDNIKMVVTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp CTTCCCEEEEEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred cCCCEEEEEEEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999999999999876 599999999999999999997643
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=5.1e-61 Score=493.00 Aligned_cols=367 Identities=24% Similarity=0.380 Sum_probs=310.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+++++|+++||+|+|||||+++|+... + ...+|..++|+++|+|++..+..++++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~---------------------~---~~~~d~~~~e~~~GiTi~~~~~~~~~~ 71 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIA---------------------S---TSAHDKLPESQKRGITIDIGFSAFKLE 71 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEET
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCC---------------------c---ccccccccccccCccEEecceEEEEEC
Confidence 5678999999999999999999996321 0 234777888999999999999999999
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
++.++|||||||++|.+++.++++.+|++|||||+++|..+ |+++|+.++..+++|. ++|+||+|+.+
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~-------qt~e~l~~~~~~~ip~-IvviNK~Dl~~---- 139 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT-------QTGEHMLILDHFNIPI-IVVITKSDNAG---- 139 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCH-------HHHHHHHHHHHTTCCB-CEEEECTTSSC----
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccH-------HHHHHHHHHHHcCCCE-EEEEECCCccc----
Confidence 99999999999999999999999999999999999987544 9999999999999995 88899999986
Q ss_pred HHHHHHHHHHHHhhhhhc-CcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC-C--C
Q psy13961 164 EARFEEIKKEVSGYIKKI-GYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-P--S 239 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~-g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~-~--~ 239 (459)
++.++++.+++..+++.. ++ ..++++++||++|+|+ ++|+++|.+..+ | .
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~--~~~~ii~vSA~~g~gI------------------------~~L~~~L~~~i~~~~~~ 193 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNL--KNSSIIPISAKTGFGV------------------------DELKNLIITTLNNAEII 193 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSG--GGCCEEECCTTTCTTH------------------------HHHHHHHHHHHHHSCCC
T ss_pred chhHHHHHHHHHHHHhhhccc--ccceEEEEECcCCCCH------------------------HHHHHHHHHhhcCcccc
Confidence 366778888888888776 65 3578999999999999 788888877543 3 4
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccC
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKE 319 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~ 319 (459)
+..++|++++|+++|++++.|+|++|+|.+|+|++||.|.+.|.+...+|++|++++.++++|.|||+|++.+++++..+
T Consensus 194 ~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~ 273 (482)
T 1wb1_A 194 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQ 273 (482)
T ss_dssp CCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSC
T ss_pred ccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhh
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred cceeEEE-ccCCCCCCcccceEEEEEEEecC-CCCCCCCCeeEEeeeeeeEEEEEEEEe-eeecCCCCcccccCccccCC
Q psy13961 320 LRRGFVA-GDSKASPPKATQDFTAQVIVLNH-PGQISNGYTPVLDCHTAHIACKFAEIK-EKCDRRTGKTTEENPKALKS 396 (459)
Q Consensus 320 i~~G~vl-~~~~~~~~~~~~~f~a~i~~l~~-~~~i~~g~~~~~~~~~~~~~~~i~~i~-~~~~~~~~~~~~~~~~~l~~ 396 (459)
+++||+| ++++ ++.+++.|+|++.|+++ +.++.+||++++|+++.+++|++..+. +++|.++++.. +++|++
T Consensus 274 i~~Gdvl~~~~~--~~~~~~~~~a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~---~~~l~~ 348 (482)
T 1wb1_A 274 IYRGXILTSKDT--KLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENII---LNEVIS 348 (482)
T ss_dssp CCSSCBCCCTTC--CCCCEEEEEECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEE---CCSSCC
T ss_pred ccccceEecCCC--CCceeeEEEEEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEecccccccccccc---chhhcC
Confidence 9999999 6543 55678999999999986 689999999999999999999999998 88998886542 578999
Q ss_pred CCEEEEEEEeCCeEEeeecCCCCCcceEEEEE---C---CceEEEEEEEeecC
Q psy13961 397 GDAAIIVLVPSKPMCVESFSEFPPLGRFAVRD---M---RQTVAVGVIKVNNN 443 (459)
Q Consensus 397 g~~~~v~l~l~~~i~~~~~~~~~~~grfilrd---~---~~tva~G~V~~v~~ 443 (459)
||.+.|+|+|++|+|++++ +||+||| + ++|+|+|+|+++.+
T Consensus 349 g~~~~v~l~~~~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 349 GNEXYXAFELEEKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp SSCCCEEEEEEEEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred CCEEEEEEEcCccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 9999999999999999865 5999999 4 68999999999854
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=9.5e-59 Score=460.33 Aligned_cols=334 Identities=21% Similarity=0.312 Sum_probs=291.3
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++||+|+|||||+++|+ ++|+|++..+..+++.++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999994 468999999999999999999
Q ss_pred EEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE-ccCCCCCCCcHHHH
Q psy13961 89 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN-KMDSTEPPYSEARF 167 (459)
Q Consensus 89 liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN-K~D~~~~~~~~~~~ 167 (459)
|||||||++|.+++.++++.+|++||||| +.+.++ |+++|+.++..+++|.+|+++| |||+ + +..+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~-------qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~----~~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDA-------HTGECIIALDLLGFKHGIIALTRSDST-H----MHAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCH-------HHHHHHHHHHHTTCCEEEEEECCGGGS-C----HHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcH-------HHHHHHHHHHHcCCCeEEEEEEeccCC-C----HHHH
Confidence 99999999999999999999999999999 877654 9999999999999996588899 9999 6 2445
Q ss_pred HHHHHHHHhhhhhcCcCCceeeEee--cCCCC---CCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC--
Q psy13961 168 EEIKKEVSGYIKKIGYNPATVAFVP--ISGWH---GDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR-- 240 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~~~~~i~--iSa~~---g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~-- 240 (459)
+++.++++++++..++ ..+++++ +||++ |+|+ ++|++.|.+.+|+.+
T Consensus 131 ~~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi------------------------~~L~~~l~~~~~~~~~~ 184 (370)
T 2elf_A 131 DELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGV------------------------DELKARINEVAEKIEAE 184 (370)
T ss_dssp HHHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTH------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCH------------------------HHHHHHHHhhccccccC
Confidence 6667788888876654 4578999 99999 7777 678888776654322
Q ss_pred --C-CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcc
Q psy13961 241 --P-TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV 317 (459)
Q Consensus 241 --~-~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~ 317 (459)
. ...|++++|+++|++++.|++++|+|++|+|++||+|++.|.+..++|++|++++.++++|.|||+|++.|++++.
T Consensus 185 ~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~ 264 (370)
T 2elf_A 185 NAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQA 264 (370)
T ss_dssp HHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCG
T ss_pred CcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCH
Confidence 2 4456888899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCcceeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCC
Q psy13961 318 KELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSG 397 (459)
Q Consensus 318 ~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g 397 (459)
.++++||+|++ . + .++++|+|++.|++++.+|.+||++++|+++.+++|+|..+.. |.+ ++ ..+.+|
T Consensus 265 ~~i~~Gdvl~~--~-~-~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g 331 (370)
T 2elf_A 265 KDIERGFIISD--K-E-IVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPG 331 (370)
T ss_dssp GGCCTTCEEES--C-C-EEEEEEEEEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTT
T ss_pred HHcCCceEEEC--C-C-ceeEEEEEEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCC
Confidence 99999999997 2 4 7899999999999998999999999999999999999999853 221 11 245689
Q ss_pred CEEEEEEEeCCeEEeeecCCCCCcceEEEEECC---ceEEEEEEE
Q psy13961 398 DAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMR---QTVAVGVIK 439 (459)
Q Consensus 398 ~~~~v~l~l~~~i~~~~~~~~~~~grfilrd~~---~tva~G~V~ 439 (459)
|.+.|+|++.+|+|+++|+ ||+|||++ +|+|+|+|.
T Consensus 332 ~~~~v~l~~~~pi~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 332 STCVLELSGNKKLAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp CEEEEEEEEEEEEEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred CEEEEEEEECcEEEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 9999999999999999887 99999975 699999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=6.2e-56 Score=448.36 Aligned_cols=343 Identities=29% Similarity=0.437 Sum_probs=288.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
+++.++|+++||+|||||||+++|+.. ..+..++|+++|+|++..+..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~----------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC----------------------------CCC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC----------------------------ccccChhhhcCCcEEEEeeeeeecc
Confidence 567899999999999999999999621 1456678889999998877654431
Q ss_pred -----------------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH
Q psy13961 84 -----------------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 140 (459)
Q Consensus 84 -----------------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~ 140 (459)
.+.++|||||||++|.+++.+++..+|++||||||+++.. .+|+++|+.++
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 132 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP------RPQTREHLMAL 132 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCC------ChhHHHHHHHH
Confidence 2789999999999999999999999999999999998741 23999999999
Q ss_pred HHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCcccccccccc
Q psy13961 141 FTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKE 220 (459)
Q Consensus 141 ~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~ 220 (459)
..++++++++|+||||+.+. ....+..+++.++++... ...++++++||++|+|+
T Consensus 133 ~~~~~~~iivviNK~Dl~~~----~~~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi------------------- 187 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDK----EKALENYRQIKEFIEGTV--AENAPIIPISALHGANI------------------- 187 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCH----HHHHHHHHHHHHHHTTST--TTTCCEEECBTTTTBSH-------------------
T ss_pred HHcCCCcEEEEEECccCCCH----HHHHHHHHHHHHHHHhcC--cCCCeEEEeeCCCCCCH-------------------
Confidence 99998779999999999863 222344455566665432 23578999999999999
Q ss_pred CCCChhhHHHhccccCC-CCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEEecCCe------
Q psy13961 221 GKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTFAPANL------ 285 (459)
Q Consensus 221 ~~~~g~~Ll~~l~~~~~-~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~~p~~~------ 285 (459)
+.|+++|.+.+| |.+..+.|++++|+++|.+.+ .|+|++|+|.+|+|++||.|.+.|++.
T Consensus 188 -----~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~ 262 (410)
T 1kk1_A 188 -----DVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGR 262 (410)
T ss_dssp -----HHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTE
T ss_pred -----HHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccc
Confidence 889999987554 556678899999999998753 688999999999999999999998642
Q ss_pred ------EEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecCC------
Q psy13961 286 ------TTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHP------ 350 (459)
Q Consensus 286 ------~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~------ 350 (459)
..+|++|+.++.++++|.|||+|++.++ ++...++.+||||++++. ++..+++|+|++.||+++
T Consensus 263 ~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~-~~~~~~~~~a~~~~l~~~~g~~~~ 341 (410)
T 1kk1_A 263 IKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK-LPPVWDSLRLEVHLLERVVGTEQE 341 (410)
T ss_dssp EEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC-SCCEEEEEEEEEEECCCCC--CCC
T ss_pred cccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCC-CCceeEEEEEEEEEEecccccccc
Confidence 6799999999999999999999999986 456678999999998775 666788999999999985
Q ss_pred ---CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEE
Q psy13961 351 ---GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVR 427 (459)
Q Consensus 351 ---~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilr 427 (459)
.+|.+||++++|+++.++.|+|..+.. + .|+|+|.+|+|++.++ ||+||
T Consensus 342 ~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------------------~--~~~l~~~~p~~~~~~~------~~~~~ 393 (410)
T 1kk1_A 342 LKVEPIKRKEVLLLNVGTARTMGLVTGLGK--------------------D--EIEVKLQIPVCAEPGD------RVAIS 393 (410)
T ss_dssp CSCCCCCTTCEEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC------EEEEE
T ss_pred cccccCCCCCEEEEEEcCCEEeEEEEEecC--------------------C--EEEEEeCCcEEecCCC------EEEEE
Confidence 799999999999999999999998731 2 7888899999999876 99999
Q ss_pred E----CCceEEEEEEE
Q psy13961 428 D----MRQTVAVGVIK 439 (459)
Q Consensus 428 d----~~~tva~G~V~ 439 (459)
+ .++|+|+|.|+
T Consensus 394 ~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 394 RQIGSRWRLIGYGIIK 409 (410)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EecCCCcEEEEEEEEc
Confidence 9 56899999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.7e-56 Score=450.47 Aligned_cols=343 Identities=27% Similarity=0.411 Sum_probs=277.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 82 (459)
+++.++|+++||+|+|||||+++|+. ...+...+|+++|+|++..+..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g----------------------------~~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTG----------------------------VWTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHS----------------------------CCCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhC----------------------------CccccCcccccCCcEEEecccccccc
Confidence 56789999999999999999999962 1245667788899999887654432
Q ss_pred --------------C--------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH
Q psy13961 83 --------------S--------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 140 (459)
Q Consensus 83 --------------~--------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~ 140 (459)
. .+.++|||||||++|.+++.++++.+|++|||+|++++.. .+|+++|+..+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~------~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCP------QPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSS------CHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCC------CchhHHHHHHH
Confidence 1 2789999999999999999999999999999999998741 23999999999
Q ss_pred HHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCcccccccccc
Q psy13961 141 FTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKE 220 (459)
Q Consensus 141 ~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~ 220 (459)
..++++++++|+||+|+.+.++.+..++++ .++++... ...++++++||++|+|+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~--~~~~~~i~vSA~~g~gi------------------- 185 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTI--AENAPIIPISAHHEANI------------------- 185 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHHHH----HHHHTTST--TTTCCEEEC------CH-------------------
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcC--CCCCeEEEeeCCCCCCH-------------------
Confidence 999987799999999998754433444444 44444322 24578999999999999
Q ss_pred CCCChhhHHHhccccC-CCCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEEecCCe------
Q psy13961 221 GKADGKCLIEALDAIL-PPSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTFAPANL------ 285 (459)
Q Consensus 221 ~~~~g~~Ll~~l~~~~-~~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~~p~~~------ 285 (459)
++|+++|.+.+ +|.+..++|++++|+++|++.+ .|+|++|+|.+|+|++||.|.+.|++.
T Consensus 186 -----~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~ 260 (408)
T 1s0u_A 186 -----DVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 260 (408)
T ss_dssp -----HHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTC
T ss_pred -----HHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccc
Confidence 88999998754 4556778999999999998864 688999999999999999999998642
Q ss_pred ------EEEEEEEEeccccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecCC------
Q psy13961 286 ------TTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHP------ 350 (459)
Q Consensus 286 ------~~~V~~I~~~~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~~------ 350 (459)
..+|++|++++.++++|.|||+|++.+. +++..++++||||++++. ++..++.|+|++.||+++
T Consensus 261 ~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~-~~~~~~~~~a~~~~l~~~~g~~~~ 339 (408)
T 1s0u_A 261 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT-LPPIREKITIRANLLDRVVGTKEE 339 (408)
T ss_dssp CEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC-SCCEEEEEEEEEEECCCCSSCSST
T ss_pred cccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCC-CCceeEEEEEEEEEEecccccccc
Confidence 6899999999999999999999999986 677789999999998775 666788999999999985
Q ss_pred ---CCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcceEEEE
Q psy13961 351 ---GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVR 427 (459)
Q Consensus 351 ---~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~grfilr 427 (459)
.+|.+||++++|+++.++.|+|..+.. + .|+|+|++|+|++.++ ||+||
T Consensus 340 ~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~--------------------~--~~~~~~~~p~~~~~~~------~~~~~ 391 (408)
T 1s0u_A 340 LKIEPLRTGEVLMLNIGTATTAGVITSARG--------------------D--IADIKLKLPICAEIGD------RVAIS 391 (408)
T ss_dssp TCCCCCCTTCEEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTTC------EEEEE
T ss_pred ccccCCCCCCEEEEEEcCCEEEEEEEEecC--------------------C--EEEEEECCcEEecCCC------EEEEE
Confidence 899999999999999999999998731 2 7788899999999876 99999
Q ss_pred E----CCceEEEEEEE
Q psy13961 428 D----MRQTVAVGVIK 439 (459)
Q Consensus 428 d----~~~tva~G~V~ 439 (459)
+ ..+|+|+|.|+
T Consensus 392 ~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 392 RRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EECSSSEEEEEEEEEC
T ss_pred EecCCCeEEEEEEEEc
Confidence 9 56899999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=2.9e-52 Score=420.42 Aligned_cols=355 Identities=22% Similarity=0.282 Sum_probs=281.7
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE--
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF-- 80 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-- 80 (459)
..++.++|+++||+|+|||||+++|+...... ...+...........+..++.+.+.....+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK----------------KLGYAETNIGVCESCKKPEAYVTEPSCKSCGS 67 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS----------------SSEEEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccc----------------ccCccccceeeccccccccceecccccccccc
Confidence 35678999999999999999999997422110 000111111111112223344433222111
Q ss_pred ---eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc-eeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 81 ---ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE-FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 81 ---~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~-~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
....+.++|||||||++|.+++..+++.+|++|||+|++++. ++ |+++|+.++..++++++++|+||+|
T Consensus 68 ~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~-------qt~~~~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP-------QTREHFVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp CSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCH-------HHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred cccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcH-------HHHHHHHHHHHcCCCCEEEEEECcc
Confidence 122378999999999999999999999999999999999874 33 9999999999999866999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
+.+. ....+..+++.++++..+. ..++++++||++|+|+ ++|+++|.+.+
T Consensus 141 l~~~----~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi------------------------~~L~~~l~~~l 190 (403)
T 3sjy_A 141 VVSK----EEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINI------------------------DSLIEGIEEYI 190 (403)
T ss_dssp GSCH----HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSH------------------------HHHHHHHHHHS
T ss_pred ccch----HHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcCh------------------------HHHHHHHHHhC
Confidence 9872 3344555666666655443 4678999999999999 88999998754
Q ss_pred -CCCCCCCCCeeEEeEEEEEeCC--------ceeEEEEEEEeeeEecCCeEEEecCCe------------EEEEEEEEec
Q psy13961 237 -PPSRPTEKPLRLPLQDVYKIGG--------IGTVPVGRVETGVIKPGMLVTFAPANL------------TTEVKSVEMH 295 (459)
Q Consensus 237 -~~~~~~~~p~~~~i~~v~~~~~--------~G~v~~G~v~sG~l~~gd~v~~~p~~~------------~~~V~~I~~~ 295 (459)
++.+..++|++++|+++|.+.+ .|+|++|+|.+|+|++||+|.+.|++. ..+|++|+++
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~ 270 (403)
T 3sjy_A 191 KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG 270 (403)
T ss_dssp CCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET
T ss_pred CCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC
Confidence 4556678999999999999876 799999999999999999999999874 5799999999
Q ss_pred cccceeEcCCCeEEEEEc---cCcccCcceeEEEccCCCCCCcccceEEEEEEEecC---------CCCCCCCCeeEEee
Q psy13961 296 HEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNH---------PGQISNGYTPVLDC 363 (459)
Q Consensus 296 ~~~v~~a~aGd~v~l~l~---~~~~~~i~~G~vl~~~~~~~~~~~~~f~a~i~~l~~---------~~~i~~g~~~~~~~ 363 (459)
+.++++|.|||+|++.|+ +++..++++|||||+++. +|..+++|+|++.||++ +.++.+|+++++|+
T Consensus 271 ~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (403)
T 3sjy_A 271 DEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADA-EVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSV 349 (403)
T ss_dssp TEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTC-CCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEE
T ss_pred CEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCC-CCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEE
Confidence 999999999999999986 566789999999999876 55668999999999986 67999999999999
Q ss_pred eeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEEEEEEeCCeEEeeecCCCCCcc-eEEE-EECC---ceEEEEEE
Q psy13961 364 HTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLG-RFAV-RDMR---QTVAVGVI 438 (459)
Q Consensus 364 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~v~l~l~~~i~~~~~~~~~~~g-rfil-rd~~---~tva~G~V 438 (459)
++.++.|+|..+.. + .++|+|.+|+|++.. . ||+| |+.+ +++|.|.|
T Consensus 350 gt~~~~~~v~~~~~--------------------~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i 401 (403)
T 3sjy_A 350 GSSTTLGIVTSVKK--------------------D--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLV 401 (403)
T ss_dssp TTEEEEEEEEEECS--------------------S--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEE
T ss_pred CccEEEEEEEEecC--------------------c--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEE
Confidence 99999999998731 1 588899999999754 5 8998 6543 79999998
Q ss_pred E
Q psy13961 439 K 439 (459)
Q Consensus 439 ~ 439 (459)
+
T Consensus 402 ~ 402 (403)
T 3sjy_A 402 E 402 (403)
T ss_dssp E
T ss_pred E
Confidence 5
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=326.86 Aligned_cols=200 Identities=28% Similarity=0.545 Sum_probs=188.4
Q ss_pred CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 242 TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 242 ~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
.++||+|+|+++|+ +.|++++|+|.+|+|++||.|.+.|++.+++|++|++++.++++|.|||+|+++|++++..+++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~ 80 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEIL 80 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCc
Confidence 46899999999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEccCCCCCCcccceEEEEEEEecCCCCCCCCCeeEEeeeeeeEEEEEEEEeeeecCCCCcccccCccccCCCCEEE
Q psy13961 322 RGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401 (459)
Q Consensus 322 ~G~vl~~~~~~~~~~~~~f~a~i~~l~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~l~~g~~~~ 401 (459)
+||+||++++ +|..+++|+|++.||+++.+|.+||++++|+|+..++|+|..|.+++|.+|++..+.+|++|++||.|.
T Consensus 81 rG~vl~~~~~-~~~~~~~f~a~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 81 PGFILCDPNN-LCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp TTCEEBCSSS-CCCCCSEEEEEEECCSCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred cceEEECCCC-CCchhEEEEEEEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 9999999765 667899999999999998899999999999999999999999999999999998888899999999999
Q ss_pred EEEEeCCeEEeeecCCCCCcceEEEEECCceEEEEEEEeecCC
Q psy13961 402 IVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIKVNNNH 444 (459)
Q Consensus 402 v~l~l~~~i~~~~~~~~~~~grfilrd~~~tva~G~V~~v~~~ 444 (459)
|+|++++|+|+|+|++|+.+|||+|||+++|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998765
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.3e-41 Score=350.00 Aligned_cols=275 Identities=21% Similarity=0.286 Sum_probs=201.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.+||+|+||+|||||||+++||+.+|.+.+.- ..+.|. ..-..++|..+.|++||+||..+...++|.++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G-------~V~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~ 100 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAG-------SVKARK--AARHATSDWMAMERERGISVTTSVMQFPYRDR 100 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHH-------HHHHC----------------------CTTTEEEEEETTE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccc-------eeecCc--cccccccCChHHHHHCCCcEeeceEEEEECCE
Confidence 468999999999999999999999999886531 111121 11145799999999999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||.||..++.++++.+|+||+||||.+|+.. ||+..|.++...++| .|++|||||+.. .
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-------qT~~v~~~a~~~~lp-~i~fINK~Dr~~-----a 167 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-------QTRKLMDVCRMRATP-VMTFVNKMDREA-----L 167 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-------HHHHHHHHHHHTTCC-EEEEEECTTSCC-----C
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccc-------ccHHHHHHHHHhCCc-eEEEEecccchh-----c
Confidence 999999999999999999999999999999999998654 999999999999999 677799999987 4
Q ss_pred HHHHHHHHHHhhhhhcCcCCce----------------------------------------------------------
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPAT---------------------------------------------------------- 187 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~---------------------------------------------------------- 187 (459)
++.++.++++..|...-. +-+
T Consensus 168 d~~~~~~~i~~~l~~~~~-p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (548)
T 3vqt_A 168 HPLDVMADIEQHLQIECA-PMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRM 246 (548)
T ss_dssp CHHHHHHHHHHHHTSEEE-ESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHH
T ss_pred chhHhhhhhhhhcCCceE-eEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhh
Confidence 456666666655431100 000
Q ss_pred ----------------------eeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCC-----
Q psy13961 188 ----------------------VAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR----- 240 (459)
Q Consensus 188 ----------------------~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~----- 240 (459)
+|++..||+++. +...||+++.+++|+|.
T Consensus 247 ~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~------------------------Gv~~LLd~iv~~~PsP~~~~~~ 302 (548)
T 3vqt_A 247 DLALLEEAGTPFDEERYLKGELTPVFFGSAINNF------------------------GVREMLDMFVEFAPGPQPRPAA 302 (548)
T ss_dssp HHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTB------------------------SHHHHHHHHHHHSCCSCCEEBS
T ss_pred HHHHHhhccCchhHHHHHhCCcceeeecccccCc------------------------CHHHHHHHHHHhCCCCCCcccc
Confidence 112222222222 23899999999988663
Q ss_pred -----CCCCCeeEEeEEEEEe---CCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeE
Q psy13961 241 -----PTEKPLRLPLQDVYKI---GGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNV 308 (459)
Q Consensus 241 -----~~~~p~~~~i~~v~~~---~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v 308 (459)
+.+.||...|.+++.. ++.|++.++||+||+|+.||.|++...+++.+|.++... +.++++|.|||+|
T Consensus 303 ~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIv 382 (548)
T 3vqt_A 303 TRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDII 382 (548)
T ss_dssp SSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEE
T ss_pred ccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEE
Confidence 2357888887777655 688999999999999999999999999999999887653 5789999999999
Q ss_pred EEEEccCcccCcceeEEEccCCC
Q psy13961 309 GFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 309 ~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
++. + ..++..||+||+.+.
T Consensus 383 ai~--g--l~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 383 GIP--N--HGTIKIGDTFTESKE 401 (548)
T ss_dssp EEE--C--SSCCCTTCEEESSSS
T ss_pred Eec--C--CccCccCCEecCCCC
Confidence 875 4 578999999998654
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.7e-38 Score=330.46 Aligned_cols=268 Identities=27% Similarity=0.388 Sum_probs=205.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
+..+||+++||+|||||||+++|++.++.+++..+ -.+++|..+.|+++|+|+......+.+.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 45789999999999999999999988877754311 1466899999999999998877776654
Q ss_pred ----CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 84 ----KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.++|||||||.+|..++.++++.+|++|||||+++|... |+.+++..+...++| +++|+||||+.+
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~-------qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEA-------QTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCH-------HHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccH-------HHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 37999999999999999999999999999999999988543 999999999999999 889999999986
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
. +.+++.+++.+. +++. ..+++++||++|.|+ +.|+++|.+.+|++
T Consensus 140 a-----~~~~v~~el~~~---lg~~--~~~vi~vSAktg~GI------------------------~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 140 A-----DVDRVKKQIEEV---LGLD--PEEAILASAKEGIGI------------------------EEILEAIVNRIPPP 185 (600)
T ss_dssp C-----CHHHHHHHHHHT---SCCC--GGGCEECBTTTTBSH------------------------HHHHHHHHHHSCCC
T ss_pred c-----CHHHHHHHHHHh---hCCC--cccEEEEEeecCCCc------------------------hHHHHHHHHhcccc
Confidence 3 234455555443 3442 235899999999999 78999988776654
Q ss_pred -CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---cccceeEcCCCeEEEEEccC
Q psy13961 240 -RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQEAVPGDNVGFNVKNV 315 (459)
Q Consensus 240 -~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~a~aGd~v~l~l~~~ 315 (459)
...+.|+++.|.+++..++.|++++|||.+|+|++||.|++.|++...+|+++... +.+++++.|||++.+. .++
T Consensus 186 ~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi 264 (600)
T 2ywe_A 186 KGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASI 264 (600)
T ss_dssp CCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSC
T ss_pred cccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccc
Confidence 45688999999999999999999999999999999999999999999999998764 4678899999977664 455
Q ss_pred -cccCcceeEEEccCCC
Q psy13961 316 -SVKELRRGFVAGDSKA 331 (459)
Q Consensus 316 -~~~~i~~G~vl~~~~~ 331 (459)
+..++++||+|++++.
T Consensus 265 ~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 265 KDVRDIRIGDTITHAKN 281 (600)
T ss_dssp CCTTSSCTTCEEEESSS
T ss_pred cchhhccCCCEEEeCCC
Confidence 4678999999998765
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.6e-37 Score=323.84 Aligned_cols=267 Identities=26% Similarity=0.385 Sum_probs=199.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
..+||+++||+|||||||+++|++.++.+.+..+ -.+++|..+.|+++|+|+......+.+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 5689999999999999999999998887764311 1466899999999999999887777664
Q ss_pred ---CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 84 ---KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
.+.++|||||||.+|..++.++++.+|++|+|+|++++... |+.+++..+...++| +++|+||+|+.+.
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~-------qt~~~~~~~~~~~ip-iIvViNKiDl~~a 138 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA-------QTLANCYTAMEMDLE-VVPVLNKIDLPAA 138 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCT-------HHHHHHHHHHHTTCE-EEEEEECTTSTTC
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCH-------HHHHHHHHHHHCCCC-EEEeeeccCcccc
Confidence 48999999999999999999999999999999999988543 999999999999999 8888999999873
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC-
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS- 239 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~- 239 (459)
+.+++.+++...+ ++. ..+++++||++|.|+ +.|+++|.+.+|++
T Consensus 139 -----~~~~v~~ei~~~l---g~~--~~~vi~vSAktg~GI------------------------~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 139 -----DPERVAEEIEDIV---GID--ATDAVRCSAKTGVGV------------------------QDVLERLVRDIPPPE 184 (599)
T ss_dssp -----CHHHHHHHHHHHT---CCC--CTTCEEECTTTCTTH------------------------HHHHHHHHHHSCCCC
T ss_pred -----cHHHHHHHHHHHh---CCC--cceEEEeecccCCCc------------------------hhHHHHHhhcCCCcc
Confidence 2344455554433 442 235899999999999 78999998776644
Q ss_pred CCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec---cccceeEcCCCeEEEEEccC-
Q psy13961 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH---HEALQEAVPGDNVGFNVKNV- 315 (459)
Q Consensus 240 ~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~---~~~v~~a~aGd~v~l~l~~~- 315 (459)
...+.|+++.|.+++..++.|++++|||.+|+|++||.+.+.+++...+|.++... ..+++++.|||++.+ +.++
T Consensus 185 ~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~ 263 (599)
T 3cb4_D 185 GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIK 263 (599)
T ss_dssp CCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCS
T ss_pred ccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-ecccc
Confidence 45679999999999999999999999999999999999999999988899988763 467889999997665 4454
Q ss_pred cccCcceeEEEccCCC
Q psy13961 316 SVKELRRGFVAGDSKA 331 (459)
Q Consensus 316 ~~~~i~~G~vl~~~~~ 331 (459)
+..++++||+|++.+.
T Consensus 264 ~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 264 DIHGAPVGDTLTLARN 279 (599)
T ss_dssp SGGGSCTTCEEEESSS
T ss_pred ccccCccCCEeeecCC
Confidence 3678999999998765
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=5.5e-37 Score=316.66 Aligned_cols=275 Identities=20% Similarity=0.281 Sum_probs=215.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++||+|||||||+++|++..+.+...... ..++ ......+|..+.|+++|+|+......+++.++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v-------~~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 82 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTI-------KSRK--AARHATSDWMELEKQRGISVTTSVMQFPYKDY 82 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHH-------HTC------CCHHHHHHHHHHHCCSSSSSEEEEEETTE
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceee-------eccc--cccceecccchhhhcCCeeEEEeEEEEEeCCE
Confidence 46899999999999999999999888876432110 0110 01134577888899999999999999999999
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||.+|...+.++++.+|++|+|+|++.+... ++..++..+...++| +++|+||+|+...+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~-------~t~~~~~~~~~~~iP-iivviNK~Dl~~~~---- 150 (528)
T 3tr5_A 83 LINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEP-------RTIKLMEVCRLRHTP-IMTFINKMDRDTRP---- 150 (528)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-------HHHHHHHHHHTTTCC-EEEEEECTTSCCSC----
T ss_pred EEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEeCCCCcccc----
Confidence 999999999999999999999999999999999987543 899999999999999 78889999997632
Q ss_pred HHHHHHHHHHhhhhhc--------C-------------------------------------------------------
Q psy13961 166 RFEEIKKEVSGYIKKI--------G------------------------------------------------------- 182 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~--------g------------------------------------------------------- 182 (459)
..+..+++.+.+... |
T Consensus 151 -~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~ 229 (528)
T 3tr5_A 151 -SIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNE 229 (528)
T ss_dssp -HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHH
T ss_pred -HHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhh
Confidence 222233333222100 0
Q ss_pred ----------------cCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCCCC-----
Q psy13961 183 ----------------YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP----- 241 (459)
Q Consensus 183 ----------------~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~----- 241 (459)
.....+|++++||++|.|+ +.||++|.+++|++..
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV------------------------~~Lld~i~~~~p~p~~~~~~~ 285 (528)
T 3tr5_A 230 IELVKGASHPFEREGYLKGELTPIFFGSAINNFGV------------------------GELLDAFVKEAPPPQGRETNS 285 (528)
T ss_dssp HHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSH------------------------HHHHHHHHHHSCCCCCBCBSS
T ss_pred cchhhhhhhHHHHHHHhcCceeEEEeccccCCccH------------------------HHHHHHHHHhCCCCCcccccc
Confidence 0011246777888888887 8999999988876542
Q ss_pred -----CCCCeeEEeEEEEE--eC-CceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEE
Q psy13961 242 -----TEKPLRLPLQDVYK--IG-GIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVG 309 (459)
Q Consensus 242 -----~~~p~~~~i~~v~~--~~-~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~ 309 (459)
.+.||...|.++.. .+ +.|+++++||+||+|++||.|++.+.+++.+|.++.. .+.++++|.|||+++
T Consensus 286 ~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~ 365 (528)
T 3tr5_A 286 RLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIG 365 (528)
T ss_dssp SCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEE
T ss_pred eeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEE
Confidence 24788887877764 45 8899999999999999999999999999999999875 467899999999998
Q ss_pred EEEccCcccCcceeEEEccCC
Q psy13961 310 FNVKNVSVKELRRGFVAGDSK 330 (459)
Q Consensus 310 l~l~~~~~~~i~~G~vl~~~~ 330 (459)
+. + ..+++.||+||+..
T Consensus 366 ~~--~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 366 LH--N--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EE--E--SSSCCTTCEEESSC
T ss_pred Ec--C--CCCCccCCEEcCCC
Confidence 74 3 56789999999743
No 22
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.3e-37 Score=333.68 Aligned_cols=293 Identities=25% Similarity=0.285 Sum_probs=197.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
..+||+|+||+|||||||+++|++.+|.+.+. . ..+.| ..++|..+.|++||+||..+..++.|.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~--g-----~v~~~------~~~~D~~~~E~eRGITI~s~~~s~~~~~~ 78 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKL--G-----EVHDG------AATTDWMVQEQERGITITSAAVTTFWKGS 78 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECCT
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcC--c-----eecCC------CccCCChHHHHHcCCeEEeeeEEEEeccC
Confidence 46899999999999999999999887654321 0 00011 456999999999999999988888764
Q ss_pred -----CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 84 -----KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 -----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
++.++|||||||.||..++.++++.+|+||+||||.+|+.. ||+..|.++...++| .+++|||||+.
T Consensus 79 ~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-------qT~~v~~~a~~~~lp-~i~~iNKiDr~ 150 (709)
T 4fn5_A 79 RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-------QSETVWRQANKYGVP-RIVYVNKMDRQ 150 (709)
T ss_dssp TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-------HHHHHHHHHHHHTCC-EEEEEECSSST
T ss_pred cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-------hHHHHHHHHHHcCCC-eEEEEcccccc
Confidence 68999999999999999999999999999999999999755 999999999999999 67889999998
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC-CccccccC------------------C------------
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG-DNMLEVSD------------------K------------ 207 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g-~~i~~~~~------------------~------------ 207 (459)
. .++..+.++++..+... +..+ -+|+.+-.+ .++..... .
T Consensus 151 ~-----a~~~~~~~ei~~~l~~~---~~~~-~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 221 (709)
T 4fn5_A 151 G-----ANFLRVVEQIKKRLGHT---PVPV-QLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEW 221 (709)
T ss_dssp T-----CCHHHHHHHHHHHHCSC---EEES-EEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHH
T ss_pred C-----ccHHHHHHHhhhhcccc---eeee-ecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHH
Confidence 7 44556666665544211 0000 011111000 00000000 0
Q ss_pred ---------------CCCc-ccc-------------------ccccccCCC----ChhhHHHhccccCCCCC--------
Q psy13961 208 ---------------MPWF-KGW-------------------AIERKEGKA----DGKCLIEALDAILPPSR-------- 240 (459)
Q Consensus 208 ---------------~~w~-~~~-------------------~~~~~~~~~----~g~~Ll~~l~~~~~~~~-------- 240 (459)
+..| ++. -....+|++ ..+.||+++..++|+|.
T Consensus 222 ~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~ 301 (709)
T 4fn5_A 222 RSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGV 301 (709)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECB
T ss_pred HHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCccccccccc
Confidence 0000 000 000111222 23789999998887652
Q ss_pred -------------CCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEc
Q psy13961 241 -------------PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAV 303 (459)
Q Consensus 241 -------------~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~ 303 (459)
+.+.|+.+.|.++...++.|++.++||+||+|++||+|++...+++.+|.++.. ...++++|.
T Consensus 302 ~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~ 381 (709)
T 4fn5_A 302 SPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVR 381 (709)
T ss_dssp CCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEEC
T ss_pred CCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeec
Confidence 346789999999888899999999999999999999999888887788888765 357899999
Q ss_pred CCCeEEEEEccCcccCcceeEEEccCCCC
Q psy13961 304 PGDNVGFNVKNVSVKELRRGFVAGDSKAS 332 (459)
Q Consensus 304 aGd~v~l~l~~~~~~~i~~G~vl~~~~~~ 332 (459)
|||+|++. |+ .++.+||+||+.+..
T Consensus 382 aGdIv~i~--Gl--~~~~~gdTl~~~~~~ 406 (709)
T 4fn5_A 382 AGDIAALI--GM--KDVTTGDTLCSIEKP 406 (709)
T ss_dssp TTCEEEEC--SC--SSCCTTCEEECSSSC
T ss_pred CCCeeeec--CC--CcCccCCEecCCCcc
Confidence 99999864 54 578999999986653
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=3.7e-36 Score=310.88 Aligned_cols=293 Identities=21% Similarity=0.280 Sum_probs=196.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+..++|+++||+|||||||+++|++..+.+...... .++... ...++|..+.|+++|+|+......+++.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v--------~~~~~~-~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV--------KGRGSN-QHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCcccccee--------ecCccc-cceeeccchhcccCCcceeeeEEEEEECC
Confidence 346899999999999999999999876655322000 000000 13357888899999999999999999999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|||||||.+|...+.++++.+|++|+|+|++++... ++++++..+...++| +++++||+|+...+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-------~t~~~~~~~~~~~ip-iivviNK~Dl~~~~--- 150 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-------RTRKLMEVTRLRDTP-ILTFMNKLDRDIRD--- 150 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-------HHHHHHHHHTTTTCC-EEEEEECTTSCCSC---
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-------HHHHHHHHHHHcCCC-EEEEEcCcCCcccc---
Confidence 9999999999999999999999999999999999987533 899999999889999 88899999998632
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccC--------------------------------------
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSD-------------------------------------- 206 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~-------------------------------------- 206 (459)
..++.++++..+.... ....+...|+.++.|+.+...
T Consensus 151 --~~~~~~~i~~~l~~~~---~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~ 225 (529)
T 2h5e_A 151 --PMELLDEVENELKIGC---APITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQ 225 (529)
T ss_dssp --HHHHHHHHHHHHCCEE---EESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHH
T ss_pred --HHHHHHHHHHHhCCCc---cceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHH
Confidence 2344455544432111 111122245555555433211
Q ss_pred -------------------------CCCCccccccccccCCCChhhHHHhccccCCCCCCC----------CCCeeEEeE
Q psy13961 207 -------------------------KMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPT----------EKPLRLPLQ 251 (459)
Q Consensus 207 -------------------------~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~~~~----------~~p~~~~i~ 251 (459)
..|||.|+... +.+.+.||++|.+++|++... +.||...|.
T Consensus 226 ~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~----~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vf 301 (529)
T 2h5e_A 226 QLRDELELVKGASNEFDKELFLAGEITPVFFGTALG----NFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVF 301 (529)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTT----TBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEE
T ss_pred HhhcccchhhhhhhhhhHHHHHhCceeEEEeeeccc----CCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEE
Confidence 01222221110 112378999999988866432 356766555
Q ss_pred EEEE---eCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEEccCcccCcceeE
Q psy13961 252 DVYK---IGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVKELRRGF 324 (459)
Q Consensus 252 ~v~~---~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~~i~~G~ 324 (459)
++.. .++.|++++|||+||+|++||.|++.+.+++.+|.+|+.. +.++++|.|||+|++. + ..++++||
T Consensus 302 Ki~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~--l~~~~~Gd 377 (529)
T 2h5e_A 302 KIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLH--N--HGTIQIGD 377 (529)
T ss_dssp EECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEEC--C--SSCCCTTC
T ss_pred EEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEe--c--cCCCccCC
Confidence 5432 3468999999999999999999999999999999999864 6889999999999875 4 57789999
Q ss_pred EEccCC
Q psy13961 325 VAGDSK 330 (459)
Q Consensus 325 vl~~~~ 330 (459)
+||+++
T Consensus 378 tl~~~~ 383 (529)
T 2h5e_A 378 TFTQGE 383 (529)
T ss_dssp EEESSC
T ss_pred EeecCC
Confidence 999865
No 24
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=4.8e-39 Score=340.37 Aligned_cols=269 Identities=26% Similarity=0.275 Sum_probs=211.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.+||+|+||+|||||||+++|++.+|.+.+. |.-. .-..++|..+.|++||+||..+..+++|.++.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~------------g~v~-~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~ 68 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITEL------------GSVD-KGTTRTDNTLLERQRGITIQTGITSFQWENTK 68 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSC------------SSCC-CSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCB
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccc------------cccc-cCCcccCCcHHHHhCCCcEEeeeEEEEECCEE
Confidence 5799999999999999999999999988642 1110 11457999999999999999999999999999
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
++|||||||.||..++.++++.+|+||+||||.+|+.. ||+.+|.++...++| .|++|||||+...++
T Consensus 69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~-------qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~---- 136 (638)
T 3j25_A 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQA-------QTRILFHALRKMGIP-TIFFINKIDQNGIDL---- 136 (638)
T ss_dssp CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCS-------HHHHHHHHHHHHTCS-CEECCEECCSSSCCS----
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcH-------HHHHHHHHHHHcCCC-eEEEEeccccccCCH----
Confidence 99999999999999999999999999999999988654 999999999999999 577799999987433
Q ss_pred HHHHHHHHHhhhhhcCcC--------------------------------------------------------CceeeE
Q psy13961 167 FEEIKKEVSGYIKKIGYN--------------------------------------------------------PATVAF 190 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~--------------------------------------------------------~~~~~~ 190 (459)
..+.+++++.+...-.. ..-.|+
T Consensus 137 -~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 215 (638)
T 3j25_A 137 -STVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPL 215 (638)
T ss_dssp -HHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCC
T ss_pred -HHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccc
Confidence 34444444333110000 001233
Q ss_pred eecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC-CCCCCCeeEEeEEEEEeCCceeEEEEEEEe
Q psy13961 191 VPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS-RPTEKPLRLPLQDVYKIGGIGTVPVGRVET 269 (459)
Q Consensus 191 i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~-~~~~~p~~~~i~~v~~~~~~G~v~~G~v~s 269 (459)
+..||+++.|+ +.||+++.+.+|++ ...+.||.+.|.+++..++.|++.++||+|
T Consensus 216 ~~gSa~~~~Gv------------------------~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~s 271 (638)
T 3j25_A 216 YHGSAKSNIGI------------------------DNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYS 271 (638)
T ss_dssp CCCCSTTCCSH------------------------HHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSS
T ss_pred cccccccCCCc------------------------hhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEc
Confidence 44455555444 89999998877754 345688999999888889999999999999
Q ss_pred eeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEccCcccCcceeEEEccCCC
Q psy13961 270 GVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 270 G~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
|+|+.||.|++...+ +.+|.++.. ...++++|.|||++++. + ..++.|+++++...
T Consensus 272 G~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~--g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 272 GVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQ--N---EFLKLNSVLGDTKL 331 (638)
T ss_dssp BCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCC--S---SSCSSEECSSSSSS
T ss_pred CcccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEe--c---cccccCceecCCCC
Confidence 999999999877654 346666543 35788999999999763 3 56788999988654
No 25
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.4e-35 Score=313.61 Aligned_cols=293 Identities=25% Similarity=0.283 Sum_probs=217.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...+||+++||+|||||||+++|++..+.+.+.. +...+ ..++|..+.|+++|+|+......+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g---------~v~~g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG---------EVHDG----AATMDWMEQEQERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc---------ccCCC----ceeecChhhHHhcCceeeeceEEEEECC
Confidence 4568999999999999999999998776654320 00011 4668999999999999999888888877
Q ss_pred -------EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 85 -------FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 -------~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
+.++|||||||.+|..++.++++.+|++|+|||++++... |+.+++..+...++| +++++||+|+
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-------qt~~~~~~~~~~~ip-~ilviNKiD~ 146 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP-------QSETVWRQANKYKVP-RIAFVNKMDR 146 (704)
T ss_pred ccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcH-------HHHHHHHHHHHcCCC-EEEEEeCCCc
Confidence 9999999999999999999999999999999999988543 899999999999999 7888999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC-CccccccCC--CCC------------------------
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG-DNMLEVSDK--MPW------------------------ 210 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g-~~i~~~~~~--~~w------------------------ 210 (459)
.. .+++++.++++..+..... . -.+|+.+-.+ .++.+.... ..|
T Consensus 147 ~~-----~~~~~~~~~l~~~l~~~~~---~-~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 217 (704)
T 2rdo_7 147 MG-----ANFLKVVNQIKTRLGANPV---P-LQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANE 217 (704)
T ss_pred cc-----ccHHHHHHHHHHHhCCCce---e-EEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHH
Confidence 86 3456666776665532110 0 0122211000 000000000 000
Q ss_pred --------------------ccccc-------------------cccccCCC----ChhhHHHhccccCCCCCC------
Q psy13961 211 --------------------FKGWA-------------------IERKEGKA----DGKCLIEALDAILPPSRP------ 241 (459)
Q Consensus 211 --------------------~~~~~-------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~~------ 241 (459)
+++.. ....+|++ +.+.||++|..++|++..
T Consensus 218 ~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~ 297 (704)
T 2rdo_7 218 WHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING 297 (704)
T ss_pred HHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccc
Confidence 00000 00111222 227999999988876532
Q ss_pred ---------------CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeE
Q psy13961 242 ---------------TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEA 302 (459)
Q Consensus 242 ---------------~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a 302 (459)
.+.||.+.|.+++..++.|++++|||+||+|+.||.|++.+.+.+.+|.+|... +.++++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 377 (704)
T 2rdo_7 298 ILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEV 377 (704)
T ss_pred cCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEccee
Confidence 467899999999999999999999999999999999999999888999998753 6789999
Q ss_pred cCCCeEEEEEccCcccCcceeEEEccCCC
Q psy13961 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 303 ~aGd~v~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
.|||++++. + .+++++||+||+.+.
T Consensus 378 ~aGdIv~i~--g--l~~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 378 RAGDIAAAI--G--LKDVTTGDTLCDPDA 402 (704)
T ss_pred CCCCEEEEe--C--cccCccCCEEeCCCc
Confidence 999999986 5 467899999998654
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.7e-34 Score=308.02 Aligned_cols=293 Identities=26% Similarity=0.288 Sum_probs=202.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++||+|||||||+++|++..+.+.+.. .. ..+ ..++|..+.|+++|+|+......+.+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g--~v-----~~~------~~~~d~~~~E~~~giTi~~~~~~~~~~~ 76 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG--EV-----HEG------AATMDFMEQERERGITITAAVTTCFWKD 76 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEETT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc--ee-----cCC------ceeccCchhhhhcccccccceEEEEECC
Confidence 4578999999999999999999998776654320 00 001 3568888999999999999998999999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|||||||.+|...+.++++.+|++|+|+|++.+... ++.+++..+...++| +++|+||+|+...
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~-------~t~~~~~~~~~~~~p-~ivviNKiD~~~~---- 144 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP-------QSETVWRQAEKYKVP-RIAFANKMDKTGA---- 144 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCH-------HHHHHHHHHHHTTCC-EEEEEECTTSTTC----
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcch-------hhHHHHHHHHHcCCC-EEEEEECCCcccC----
Confidence 9999999999999999999999999999999999987543 888999999999999 7888999999863
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC-CccccccCCCCC-cc---c--------------------------
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG-DNMLEVSDKMPW-FK---G-------------------------- 213 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g-~~i~~~~~~~~w-~~---~-------------------------- 213 (459)
.+.++.++++..+.. .+ ....+|+|+-.+ .++.+......| |. |
T Consensus 145 -~~~~~~~~l~~~l~~---~~-~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~ 219 (691)
T 1dar_A 145 -DLWLVIRTMQERLGA---RP-VVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEV 219 (691)
T ss_dssp -CHHHHHHHHHHTTCC---CE-EECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhCC---Cc-cceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHH
Confidence 355666666655432 11 122455554111 001000000000 00 0
Q ss_pred ---------------cc-------------------cccccCCC----ChhhHHHhccccCCCCCC--------------
Q psy13961 214 ---------------WA-------------------IERKEGKA----DGKCLIEALDAILPPSRP-------------- 241 (459)
Q Consensus 214 ---------------~~-------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~~-------------- 241 (459)
.. ....+|++ +.+.||++|.+++|++..
T Consensus 220 ~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~ 299 (691)
T 1dar_A 220 AADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVV 299 (691)
T ss_dssp HTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEE
T ss_pred HhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCcccc
Confidence 00 00112222 237999999998876542
Q ss_pred -----CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeEEEEE
Q psy13961 242 -----TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNVGFNV 312 (459)
Q Consensus 242 -----~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v~l~l 312 (459)
.+.|+.+.|.+++..++.|+++++||++|+|++||.|++.+.+...+|.+|... ..++++|.|||++++.
T Consensus 300 ~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~- 378 (691)
T 1dar_A 300 EIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV- 378 (691)
T ss_dssp EECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE-
T ss_pred ccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe-
Confidence 467999999999999999999999999999999999999998888999998753 5788999999999986
Q ss_pred ccCcccCcceeEEEccCCC
Q psy13961 313 KNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 313 ~~~~~~~i~~G~vl~~~~~ 331 (459)
+ ..++++||+||+.+.
T Consensus 379 -g--l~~~~~Gdtl~~~~~ 394 (691)
T 1dar_A 379 -G--LKETITGDTLVGEDA 394 (691)
T ss_dssp -C--CSSCCTTCEEEETTC
T ss_pred -C--cccCccCCEEecCCC
Confidence 5 456789999998664
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-33 Score=301.09 Aligned_cols=291 Identities=26% Similarity=0.300 Sum_probs=206.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++||+|+|||||+++|++..+.+.+.. . ...+ ..++|..+.|+++|+|+......+.+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g--~-----v~~~------~~~~D~~~~e~~~giTi~~~~~~~~~~~ 74 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG--E-----THEG------ASQMDWMEQEQDRGITITSAATTAAWEG 74 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccc--c-----ccCC------ceecccchhhhhcCceEeeeeEEEEECC
Confidence 4578999999999999999999998776654320 0 0001 3457888899999999999988899999
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
+.++|||||||.+|...+.++++.+|++|+|+|++.+... ++...+..+...++| +++|+||+|+...
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~-------~~~~~~~~~~~~~~p-~ilviNK~Dl~~~---- 142 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEP-------QTETVWRQATTYGVP-RIVFVNKMDKLGA---- 142 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCH-------HHHHHHHHHHHTTCC-EEEEEECTTSTTC----
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcH-------HHHHHHHHHHHcCCC-EEEEEECCCcccc----
Confidence 9999999999999999999999999999999999987543 888899889889999 7888999999863
Q ss_pred HHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccC---CCCC-cc---cc-----c-----------------
Q psy13961 165 ARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSD---KMPW-FK---GW-----A----------------- 215 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~---~~~w-~~---~~-----~----------------- 215 (459)
.+.++.++++..+.. . ....++|+|+ |+++....+ ..+| |. ++ .
T Consensus 143 -~~~~~~~~l~~~l~~---~-~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~ 215 (693)
T 2xex_A 143 -NFEYSVSTLHDRLQA---N-AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLI 215 (693)
T ss_dssp -CHHHHHHHHHHHHCC---C-EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhCC---C-ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHH
Confidence 345566666655432 1 1223567776 333221110 0011 11 00 0
Q ss_pred --------------------------------------cccccCCC----ChhhHHHhccccCCCCCC------------
Q psy13961 216 --------------------------------------IERKEGKA----DGKCLIEALDAILPPSRP------------ 241 (459)
Q Consensus 216 --------------------------------------~~~~~~~~----~g~~Ll~~l~~~~~~~~~------------ 241 (459)
....+|++ +.+.||++|.+++|++..
T Consensus 216 e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~ 295 (693)
T 2xex_A 216 EAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNP 295 (693)
T ss_dssp HHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEE
T ss_pred HHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCcc
Confidence 00112333 237899999998886532
Q ss_pred ---------CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEec----cccceeEcCCCeE
Q psy13961 242 ---------TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH----HEALQEAVPGDNV 308 (459)
Q Consensus 242 ---------~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~----~~~v~~a~aGd~v 308 (459)
.+.||.+.|.+++..++.|+++++||+||+|+.||+|++...+++.+|.+|... ..++++|.|||++
T Consensus 296 ~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ 375 (693)
T 2xex_A 296 EEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIA 375 (693)
T ss_dssp EEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEE
T ss_pred ccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEE
Confidence 467999999999999999999999999999999999999988888999998653 5788999999999
Q ss_pred EEEEccCcccCcceeEEEccCCC
Q psy13961 309 GFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 309 ~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
++. + ..++++||+||+.+.
T Consensus 376 ~i~--g--l~~~~~GdTl~~~~~ 394 (693)
T 2xex_A 376 AAV--G--LKDTGTGDTLCGEKN 394 (693)
T ss_dssp EEE--S--CSSCCTTCEEEETTC
T ss_pred EEe--C--cccCccCCEEecCCC
Confidence 986 5 466889999998653
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.5e-33 Score=296.89 Aligned_cols=270 Identities=23% Similarity=0.256 Sum_probs=212.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++||+|||||||+++|+...+.+... |.- ..-..++|..+.|+.+|+|+......+.+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~------------G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERR------------GRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSC------------CCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcc------------cee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 456899999999999999999999776554321 100 0113567888899999999988888888899
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
..++|||||||.+|...+.++++.+|++++|+|+..+... ++++++..+...++| +++++||+|+. . .
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~-------qt~~~~~~~~~~~ip-~ilv~NKiD~~-~-~-- 141 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQV-------GTERAWTVAERLGLP-RMVVVTKLDKG-G-D-- 141 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCH-------HHHHHHHHHHHTTCC-EEEEEECGGGC-C-C--
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccch-------hHHHHHHHHHHccCC-EEEEecCCchh-h-h--
Confidence 9999999999999999999999999999999999887543 899999999999999 77889999997 3 2
Q ss_pred HHHHHHHHHHHhhhhhc---------------------------------------------------------------
Q psy13961 165 ARFEEIKKEVSGYIKKI--------------------------------------------------------------- 181 (459)
Q Consensus 165 ~~~~~i~~~l~~~l~~~--------------------------------------------------------------- 181 (459)
++++.+++...+...
T Consensus 142 --~~~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l 219 (665)
T 2dy1_A 142 --YYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGL 219 (665)
T ss_dssp --HHHHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 233333343332200
Q ss_pred ------C--c--------------CCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCCC
Q psy13961 182 ------G--Y--------------NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239 (459)
Q Consensus 182 ------g--~--------------~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~~ 239 (459)
+ + ...-+|++++||++|.|+ +.||++|.+.+|++
T Consensus 220 ~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv------------------------~~Ll~~i~~~lp~p 275 (665)
T 2dy1_A 220 LEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGV------------------------LPLLELILEALPSP 275 (665)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSH------------------------HHHHHHHHHHSCCH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCH------------------------HHHHHHHHHhCCCc
Confidence 0 0 000134555555555555 89999999988866
Q ss_pred CC--CCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe----ccccceeEcCCCeEEEEEc
Q psy13961 240 RP--TEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM----HHEALQEAVPGDNVGFNVK 313 (459)
Q Consensus 240 ~~--~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~----~~~~v~~a~aGd~v~l~l~ 313 (459)
.. .+.|+.+.|.+++..++.|++++|||++|+|++||.|++.+ ...+|.+|.. ...++++|.|||++++.
T Consensus 276 ~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~-- 351 (665)
T 2dy1_A 276 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP-- 351 (665)
T ss_dssp HHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEES--
T ss_pred cccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--
Confidence 53 67899999999999999999999999999999999999887 5678888775 35789999999999985
Q ss_pred cCcccCcceeEEEccCCC
Q psy13961 314 NVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 314 ~~~~~~i~~G~vl~~~~~ 331 (459)
+ .+++++||+|++.+.
T Consensus 352 g--l~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 352 K--AEGLHRGMVLWQGEK 367 (665)
T ss_dssp S--CTTCCTTCEEESSSC
T ss_pred C--CccCccCCEEecCCC
Confidence 4 457899999998654
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=5.5e-34 Score=290.65 Aligned_cols=248 Identities=25% Similarity=0.279 Sum_probs=196.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++||+|+|||||+++|+...- . ....+|+|++...+.++++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v---------------------------~----~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV---------------------------A----SGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH---------------------------S----BTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC---------------------------c----cccCCCeeEeEEEEEEEECCE
Confidence 467899999999999999999964210 0 011368999888888888889
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.++|||||||++|..++.++++.+|++|||+|+++|.++ ||.+++..+...++| +++++||+|+.+.++.
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~-------qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~-- 121 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMP-------QTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD-- 121 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCT-------TTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC--
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccH-------HHHHHHHHHHhcCce-EEEEEEeccccccCHH--
Confidence 999999999999999999999999999999999988554 999999999999999 8999999999763221
Q ss_pred HHHHHHHHHHhhhhhcCcCC----ceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc---CCC
Q psy13961 166 RFEEIKKEVSGYIKKIGYNP----ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI---LPP 238 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~----~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~---~~~ 238 (459)
+ +...+...++.+ ..++++++||++|+|+ ++|++.|... +++
T Consensus 122 ---~----v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI------------------------~eLle~I~~~~~~~~~ 170 (501)
T 1zo1_I 122 ---R----VKNELSQYGILPEEWGGESQFVHVSAKAGTGI------------------------DELLDAILLQAEVLEL 170 (501)
T ss_dssp ---C----TTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC------------------------TTHHHHTTTTCCCSTT
T ss_pred ---H----HHHHHHHhhhhHHHhCCCccEEEEeeeeccCc------------------------chhhhhhhhhhhhhcc
Confidence 1 111121122211 2468999999999999 7788888643 333
Q ss_pred CCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEe-ccccceeEcCCCeEEEEEccCcc
Q psy13961 239 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEM-HHEALQEAVPGDNVGFNVKNVSV 317 (459)
Q Consensus 239 ~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~-~~~~v~~a~aGd~v~l~l~~~~~ 317 (459)
....+.|++++|.++|..++.|++++|+|.+|+|++||.+.+++. ..+|++|.. ++.++++|.||+.|.+. +++
T Consensus 171 ~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~- 245 (501)
T 1zo1_I 171 KAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE--YGRVRAMRNELGQEVLEAGPSIPVEIL--GLS- 245 (501)
T ss_dssp TSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS--SCEEEEECCTTTTSEEEECCSSCSSSE--EEC-
T ss_pred ccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc--eeEEEEEEecCCCcCcEeccCCcEEEe--CCC-
Confidence 445678899999999999999999999999999999999998774 568999985 56789999999999865 432
Q ss_pred cCcceeEEEccCC
Q psy13961 318 KELRRGFVAGDSK 330 (459)
Q Consensus 318 ~~i~~G~vl~~~~ 330 (459)
.....|++++...
T Consensus 246 ~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 246 GVPAAGDEVTVVR 258 (501)
T ss_dssp SCCCTTEEEEEEC
T ss_pred CCCCCCCEEEecC
Confidence 2247899987544
No 30
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.3e-35 Score=303.14 Aligned_cols=250 Identities=26% Similarity=0.336 Sum_probs=197.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~ 84 (459)
...+|+++||+|+|||||+++|+... .......|+|.+...+.+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-------------------------------~~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-------------------------------VAAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-------------------------------HHHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------cccccCCceeEEEeEEEEEeCCC
Confidence 35679999999999999999997421 01112357888887777766 56
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcH
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 164 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~ 164 (459)
..++|||||||++|..++.++++.+|++|||+|++++.++ |+.+++..+...++| +++|+||+|+.+.++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~-------qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK-------QTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCH-------HHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccH-------HHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 7899999999999999999999999999999999988655 999999999999999 89999999998633211
Q ss_pred HHHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhcccc---CCC
Q psy13961 165 ARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAI---LPP 238 (459)
Q Consensus 165 ~~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~---~~~ 238 (459)
+.+++..+ ...++ ..++++++||++|+|+ +.|++.|..+ +++
T Consensus 124 -----v~~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI------------------------~eLle~I~~l~~~~~~ 171 (537)
T 3izy_P 124 -----VKKELLAYDVVCEDYG---GDVQAVHVSALTGENM------------------------MALAEATIALAEMLEL 171 (537)
T ss_dssp -----SSSHHHHTTSCCCCSS---SSEEECCCCSSSSCSS------------------------HHHHHHHHHHHTTCCC
T ss_pred -----HHHHHHhhhhhHHhcC---CCceEEEEECCCCCCc------------------------hhHHHHHHHhhhcccc
Confidence 11222211 11111 2478999999999999 7788877554 334
Q ss_pred CCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCeEEEEEEEEecc-ccceeEcCCCeEEEEEccCcc
Q psy13961 239 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHH-EALQEAVPGDNVGFNVKNVSV 317 (459)
Q Consensus 239 ~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~~~~V~~I~~~~-~~v~~a~aGd~v~l~l~~~~~ 317 (459)
....+.|++++|.++|..++.|++++|+|.+|+|++||.+..+ ....+|++|+.++ .++++|.||+.|++. +++
T Consensus 172 ~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~- 246 (537)
T 3izy_P 172 KADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDENGRAVNEAYPSMPVGII--GWR- 246 (537)
T ss_dssp CCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS--SCCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-
T ss_pred cCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-
Confidence 4456789999999999999999999999999999999988543 3468999999875 799999999999874 654
Q ss_pred cCcceeEEEccCCC
Q psy13961 318 KELRRGFVAGDSKA 331 (459)
Q Consensus 318 ~~i~~G~vl~~~~~ 331 (459)
....+||+|+..++
T Consensus 247 ~~~~~Gd~l~~~~~ 260 (537)
T 3izy_P 247 DLPSAGDEILEVES 260 (537)
T ss_dssp EEEEEESSCCSCCS
T ss_pred CCCCCCCEEEecCC
Confidence 33589999998754
No 31
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=4.9e-33 Score=290.49 Aligned_cols=259 Identities=22% Similarity=0.301 Sum_probs=191.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe---
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--- 81 (459)
....+|+++||+|||||||+++|+.... .+.. .+|+|.+++...+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v---------------------------~~~e----~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAV---------------------------ASRE----AGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHH---------------------------SCC--------CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccC---------------------------cccc----CCceecccCeEEEeech
Confidence 3457999999999999999999974321 0000 02344333322221
Q ss_pred ---------------eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCc
Q psy13961 82 ---------------TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 146 (459)
Q Consensus 82 ---------------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip 146 (459)
.....++|||||||++|...+.++++.+|++|||+|+++|..+ ||.+++..++..++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~-------qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKP-------QTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCH-------HHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccH-------hHHHHHHHHHHcCCe
Confidence 1223699999999999999999999999999999999988543 999999999999999
Q ss_pred eEEEEEEccCCCCCCCcH------------------HHHHHHHHHHHhhhhhcCcC----------CceeeEeecCCCCC
Q psy13961 147 QLIVGVNKMDSTEPPYSE------------------ARFEEIKKEVSGYIKKIGYN----------PATVAFVPISGWHG 198 (459)
Q Consensus 147 ~iivviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~g~~----------~~~~~~i~iSa~~g 198 (459)
+++|+||||+.+. |.. ..+.+...++...+...++. ...++++|+||++|
T Consensus 125 -iIVViNKiDl~~~-~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIHG-WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGSTT-CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEecccccccc-cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 8999999999742 321 22333333444444433432 23578999999999
Q ss_pred CccccccCCCCCccccccccccCCCChhhHHHhccccCCC------CCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeE
Q psy13961 199 DNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP------SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVI 272 (459)
Q Consensus 199 ~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~------~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l 272 (459)
+|+ +.|+++|..++|. ..+.+.|+++.|.+++..++.|++++|+|.+|+|
T Consensus 203 ~GI------------------------~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~L 258 (594)
T 1g7s_A 203 EGI------------------------PELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGIL 258 (594)
T ss_dssp TTH------------------------HHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEE
T ss_pred CCc------------------------hhHHHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEE
Confidence 999 7788887654431 1245789999999999999999999999999999
Q ss_pred ecCCeEEEecCCe--EEEEEEEEec------------cccceeEc--CCCeEEEEEccCcccCcceeEEEccCCC
Q psy13961 273 KPGMLVTFAPANL--TTEVKSVEMH------------HEALQEAV--PGDNVGFNVKNVSVKELRRGFVAGDSKA 331 (459)
Q Consensus 273 ~~gd~v~~~p~~~--~~~V~~I~~~------------~~~v~~a~--aGd~v~l~l~~~~~~~i~~G~vl~~~~~ 331 (459)
++||.|++++.+. .++|++|... ..++++|. +|+.+++ .+ ..++..||+|+..++
T Consensus 259 k~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~--~~--l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 259 RKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVA--PG--IDDVMAGSPLRVVTD 329 (594)
T ss_dssp ETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEEC--SS--CTTBCTTCEEEECSS
T ss_pred eeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEE--cc--cCCCCCCCEEEecCC
Confidence 9999999999875 4589998652 35678888 7776654 23 466789999998654
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.97 E-value=5.2e-31 Score=286.55 Aligned_cols=302 Identities=27% Similarity=0.358 Sum_probs=203.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+..+||+++||+|||||||+++|++..+.+.+.. .| . ..++|..+.|+++|+|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~--~---~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------AG--E---ARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CC--C---ceeecCchhhhhcceeEeeceeEEEec
Confidence 44578999999999999999999998877775431 01 1 345788899999999998877666654
Q ss_pred ----------------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCce
Q psy13961 84 ----------------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 147 (459)
Q Consensus 84 ----------------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~ 147 (459)
++.++|||||||.+|...+.++++.+|++|+|+|+.++... |+..++..+...++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~-------qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV-------QTETVLRQALGERIK- 152 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCH-------HHHHHHHHHHHTTCE-
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-
Confidence 68999999999999999999999999999999999988544 888888888888999
Q ss_pred EEEEEEccCCCCCC--Cc----HHHHHHHHHHHHhhhhhc-----C---cCCceeeEeecCCCCCCccc---------cc
Q psy13961 148 LIVGVNKMDSTEPP--YS----EARFEEIKKEVSGYIKKI-----G---YNPATVAFVPISGWHGDNML---------EV 204 (459)
Q Consensus 148 iivviNK~D~~~~~--~~----~~~~~~i~~~l~~~l~~~-----g---~~~~~~~~i~iSa~~g~~i~---------~~ 204 (459)
+++++||+|+...+ +. ...+.++.++++..+..+ + +.+...++...|+++|.++. +.
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~ 232 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKK 232 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchh
Confidence 78889999986311 11 234566666666655421 1 33333456677888875531 00
Q ss_pred cC-------CCCC----ccc----ccccc----------------------------------------ccCCC------
Q psy13961 205 SD-------KMPW----FKG----WAIER----------------------------------------KEGKA------ 223 (459)
Q Consensus 205 ~~-------~~~w----~~~----~~~~~----------------------------------------~~~~~------ 223 (459)
.. ..-| |.. +.... ..|..
T Consensus 233 ~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~ 312 (842)
T 1n0u_A 233 FGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEK 312 (842)
T ss_dssp TTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGG
T ss_pred cCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHH
Confidence 00 0112 110 00000 00100
Q ss_pred --C---------------hhhHHHhccccCCCCC--------------------------CCCCCeeEEeEEEEEeCCce
Q psy13961 224 --D---------------GKCLIEALDAILPPSR--------------------------PTEKPLRLPLQDVYKIGGIG 260 (459)
Q Consensus 224 --~---------------g~~Ll~~l~~~~~~~~--------------------------~~~~p~~~~i~~v~~~~~~G 260 (459)
. .+.||+++.+++|+|. +.+.|+.+.|.+++..++.|
T Consensus 313 ~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G 392 (842)
T 1n0u_A 313 DLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKG 392 (842)
T ss_dssp GCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTT
T ss_pred hhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCC
Confidence 0 2678888888877652 34689999999999889999
Q ss_pred e-EEEEEEEeeeEecCCeEEEecCC------e---EEEEEEEEec----cccceeEcCCCeEEEEEccCcccCcceeEEE
Q psy13961 261 T-VPVGRVETGVIKPGMLVTFAPAN------L---TTEVKSVEMH----HEALQEAVPGDNVGFNVKNVSVKELRRGFVA 326 (459)
Q Consensus 261 ~-v~~G~v~sG~l~~gd~v~~~p~~------~---~~~V~~I~~~----~~~v~~a~aGd~v~l~l~~~~~~~i~~G~vl 326 (459)
+ +.++||+||+|+.||.|++...+ . ..+|.+|... ..++++|.|||+|++. +++...+..| +|
T Consensus 393 ~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl 469 (842)
T 1n0u_A 393 RFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TL 469 (842)
T ss_dssp CEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EE
T ss_pred ceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-ee
Confidence 6 99999999999999999765322 2 5788887653 5789999999999875 5432222445 99
Q ss_pred ccCCC
Q psy13961 327 GDSKA 331 (459)
Q Consensus 327 ~~~~~ 331 (459)
|+.+.
T Consensus 470 ~~~~~ 474 (842)
T 1n0u_A 470 TTSET 474 (842)
T ss_dssp ESCTT
T ss_pred cCCCC
Confidence 87544
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=2.6e-21 Score=171.46 Aligned_cols=151 Identities=27% Similarity=0.399 Sum_probs=108.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|++|+|||||+++|+...-. .....++|.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-------------------------------EQEAGGITQHIGAYQVTVN 53 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-------------------------------CSSCCSSSTTCCCCEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccc-------------------------------cCCCCceeEeeeEEEEEeC
Confidence 456789999999999999999999742110 0011234445555567778
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
+..+.||||||+++|...+..++..+|++++|+|++.+..+ ++.+.+..+...++| +++|+||+|+.+. .
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~--~ 123 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP-------QTVEAINHAKAANVP-IIVAINKMDKPEA--N 123 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCH-------HHHHHHHHHGGGSCC-EEEEEETTTSSCS--C
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcH-------HHHHHHHHHHhCCCC-EEEEEECccCCcC--C
Confidence 88999999999999988888888899999999999876433 667777777677899 8999999999862 1
Q ss_pred HHHHHHHHHHHHhh---hhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~---l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+++.+.+... ....+ ..++++++||++|+|+
T Consensus 124 ---~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 124 ---PDRVMQELMEYNLVPEEWG---GDTIFCKLSAKTKEGL 158 (178)
T ss_dssp ---HHHHHHHHTTTTCCBTTTT---SSEEEEECCSSSSHHH
T ss_pred ---HHHHHHHHHhcCcChhHcC---CcccEEEEecCCCCCH
Confidence 12233322211 11111 1368999999999998
No 34
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=1.2e-19 Score=174.86 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|+......+|+++|++|+|||||+++|+.....+. .+ ..+.|.+.....+
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv------------------------s~------~~~tTr~~i~~i~ 50 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI------------------------SP------RPQTTRKRLRGIL 50 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------CS------SSCCCCSCEEEEE
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeee------------------------cC------CCCceeEEEEEEE
Confidence 66666778999999999999999999985432211 01 0122222222234
Q ss_pred eeCCEEEEEEeCCCccc--------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEE
Q psy13961 81 ETSKFYVTIIDAPGHRD--------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIV 150 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~--------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iiv 150 (459)
...+.+++||||||+.+ |......++..+|++++|+|++.+... .....+..+... ++| +++
T Consensus 51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~-------~~~~i~~~l~~~~~~~p-~il 122 (301)
T 1wf3_A 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTP-------EDELVARALKPLVGKVP-ILL 122 (301)
T ss_dssp EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCH-------HHHHHHHHHGGGTTTSC-EEE
T ss_pred EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCCh-------HHHHHHHHHHhhcCCCC-EEE
Confidence 56788999999999887 566677788999999999999876321 444444566666 888 788
Q ss_pred EEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 151 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+||+|+.+. .. . +.+.+..+ .+ ..+++|+||++|.|+
T Consensus 123 V~NK~Dl~~~----~~-~-~~~~~~~~---~~----~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 123 VGNKLDAAKY----PE-E-AMKAYHEL---LP----EAEPRMLSALDERQV 160 (301)
T ss_dssp EEECGGGCSS----HH-H-HHHHHHHT---ST----TSEEEECCTTCHHHH
T ss_pred EEECcccCCc----hH-H-HHHHHHHh---cC----cCcEEEEeCCCCCCH
Confidence 8999999862 11 0 22333322 12 246899999999998
No 35
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=3.7e-19 Score=159.47 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=111.4
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...-. . ....|+...+..++..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------~------~~~~t~~~~~~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFN---------------------------E------DMIPTVGFNMRKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------C------SCCCCCSEEEEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCC---------------------------C------ccCCCCceeEEEEEeC
Confidence 356789999999999999999999742110 0 0112333444556778
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~ 159 (459)
+..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE---KIE---ASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 899999999999999998888899999999999998642 121 23333333322 5678 899999999976
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
.. ..+++.+.+.. .......++++++||++|+|+ ++|++.|.+.+.
T Consensus 139 ~~----~~~~~~~~~~~----~~~~~~~~~~~~~SA~~g~gv------------------------~~l~~~l~~~~~ 184 (188)
T 1zd9_A 139 AL----DEKELIEKMNL----SAIQDREICCYSISCKEKDNI------------------------DITLQWLIQHSK 184 (188)
T ss_dssp CC----CHHHHHHHTTG----GGCCSSCEEEEECCTTTCTTH------------------------HHHHHHHHHTCC
T ss_pred CC----CHHHHHHHhCh----hhhccCCeeEEEEECCCCCCH------------------------HHHHHHHHHHHH
Confidence 31 12233333221 111223568999999999999 778888876553
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=1.7e-19 Score=174.55 Aligned_cols=163 Identities=21% Similarity=0.248 Sum_probs=113.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.-.|+++|++|+|||||+++|+...-.+. ....+.|.......+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~------------------------------s~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII------------------------------SPKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc------------------------------CCCCCceeeEEEEEEecC
Confidence 34567999999999999999999975322111 011244544444555666
Q ss_pred -CEEEEEEeCCCccch----------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHH-HHHHHHcCCceEEEE
Q psy13961 84 -KFYVTIIDAPGHRDF----------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH-ALLAFTLGVKQLIVG 151 (459)
Q Consensus 84 -~~~~~liDtpG~~~~----------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~-~~~~~~~~ip~iivv 151 (459)
+..+.||||||+.++ ...+..++..+|++++|+|++.+... +..+. +..+...++| +++|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~-------~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRP-------RDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCH-------HHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCc-------hhHHHHHHHHHhcCCC-EEEE
Confidence 899999999999653 35667778899999999999876332 55555 6666677899 8899
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHh
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEA 231 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~ 231 (459)
+||+|+.+. .....+..+++... ++ ...+++++||++|.|+ ++|++.
T Consensus 129 ~NK~Dl~~~---~~~~~~~~~~l~~~---~~---~~~~i~~vSA~~g~gv------------------------~~L~~~ 175 (308)
T 3iev_A 129 INKIDKIGP---AKNVLPLIDEIHKK---HP---ELTEIVPISALKGANL------------------------DELVKT 175 (308)
T ss_dssp EECGGGSSS---GGGGHHHHHHHHHH---CT---TCCCEEECBTTTTBSH------------------------HHHHHH
T ss_pred EECccCCCC---HHHHHHHHHHHHHh---cc---CCCeEEEEeCCCCCCH------------------------HHHHHH
Confidence 999999731 12333333333332 22 1246899999999999 678877
Q ss_pred ccccCC
Q psy13961 232 LDAILP 237 (459)
Q Consensus 232 l~~~~~ 237 (459)
|...++
T Consensus 176 l~~~l~ 181 (308)
T 3iev_A 176 ILKYLP 181 (308)
T ss_dssp HHHHSC
T ss_pred HHHhCc
Confidence 776654
No 37
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=7e-19 Score=155.51 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=99.6
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|.......+|+++|++|+|||||+++|+...-. .+....++.+.....+
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 49 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFD-------------------------------TQLFHTIGVEFLNKDL 49 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------C----CCSEEEEEEEE
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceeeeEEEEEE
Confidence 556677899999999999999999999743110 0111122333333344
Q ss_pred eeCC--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-------cCCceEEEE
Q psy13961 81 ETSK--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-------LGVKQLIVG 151 (459)
Q Consensus 81 ~~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-------~~ip~iivv 151 (459)
..++ ..+.||||||+++|...+...+..+|++++|+|++... .+. .....+..+.. .++| +++|
T Consensus 50 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~p-~i~v 122 (177)
T 1wms_A 50 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQ---SFQ---NLSNWKKEFIYYADVKEPESFP-FVIL 122 (177)
T ss_dssp EETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTCSCTTTSC-EEEE
T ss_pred EECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHH---HHH---HHHHHHHHHHHHccccccCCCc-EEEE
Confidence 4444 58999999999999988888899999999999998752 111 12222222221 4677 8899
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+||+|+.+..... ++ +..+.+.. ..++++++||++|+|+
T Consensus 123 ~nK~Dl~~~~~~~---~~----~~~~~~~~----~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 123 GNKIDISERQVST---EE----AQAWCRDN----GDYPYFETSAKDATNV 161 (177)
T ss_dssp EECTTCSSCSSCH---HH----HHHHHHHT----TCCCEEECCTTTCTTH
T ss_pred EECCcccccccCH---HH----HHHHHHhc----CCceEEEEeCCCCCCH
Confidence 9999997432222 22 22222211 2357999999999999
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.80 E-value=3.2e-19 Score=158.27 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=106.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~- 82 (459)
++..++|+++|+.|+|||||+++|+...-. .+....++.+.....+..
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 57 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFV-------------------------------EFQESTIGAAFFSQTLAVN 57 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCT-------------------------------TTSCCCSCCSEEEEEEEET
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CcCCCCceeEEEEEEEEEC
Confidence 456789999999999999999999743110 001111222222222333
Q ss_pred -CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCC
Q psy13961 83 -SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDST 158 (459)
Q Consensus 83 -~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~ 158 (459)
....+.||||||+++|...+...+..+|++|+|+|+++... +. ...+++..+... ++| +++|+||+|+.
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---FE---RAKKWVQELQAQGNPNMV-MALAGNKSDLL 130 (181)
T ss_dssp TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 34689999999999999888888999999999999986521 11 233444444443 667 88999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
+.. +... +++..+.+..+ ++++++||++|+|+ ++|++.|.+.++.
T Consensus 131 ~~~--~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi------------------------~~l~~~l~~~~~~ 175 (181)
T 2efe_B 131 DAR--KVTA----EDAQTYAQENG-----LFFMETSAKTATNV------------------------KEIFYEIARRLPR 175 (181)
T ss_dssp TTC--CSCH----HHHHHHHHHTT-----CEEEECCSSSCTTH------------------------HHHHHHHHHTCC-
T ss_pred ccc--cCCH----HHHHHHHHHcC-----CEEEEEECCCCCCH------------------------HHHHHHHHHHHHh
Confidence 521 1111 22333333333 46999999999999 7888888766543
No 39
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.80 E-value=1.6e-19 Score=159.82 Aligned_cols=163 Identities=21% Similarity=0.246 Sum_probs=107.1
Q ss_pred CCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe
Q psy13961 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (459)
Q Consensus 2 ~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 81 (459)
++.++..+|+++|+.|+|||||+++|+...-. ......++.+.....+.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 57 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD-------------------------------NTYQATIGIDFLSKTMY 57 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEE
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceeeEEEEEEEE
Confidence 34556789999999999999999999743110 00112233344334444
Q ss_pred eCC--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccC
Q psy13961 82 TSK--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMD 156 (459)
Q Consensus 82 ~~~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D 156 (459)
.++ ..+.||||||+++|...+...+..+|++++|+|++... .+. .....+..+.. .++| +++|+||+|
T Consensus 58 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~D 130 (179)
T 2y8e_A 58 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN---SFH---QTSKWIDDVRTERGSDVI-IMLVGNKTD 130 (179)
T ss_dssp ETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTTSSE-EEEEEECGG
T ss_pred ECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECCc
Confidence 444 58999999999999988888899999999999998642 121 22333333322 3677 889999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccC
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL 236 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~ 236 (459)
+.+.. +...++ ...+.+..+ ++++++||++|+|+ +.|++.|.+.+
T Consensus 131 l~~~~--~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~~i------------------------~~l~~~l~~~~ 175 (179)
T 2y8e_A 131 LSDKR--QVSTEE----GERKAKELN-----VMFIETSAKAGYNV------------------------KQLFRRVAAAL 175 (179)
T ss_dssp GGGGC--CSCHHH----HHHHHHHHT-----CEEEEEBTTTTBSH------------------------HHHHHHHHHTC
T ss_pred ccccC--cCCHHH----HHHHHHHcC-----CeEEEEeCCCCCCH------------------------HHHHHHHHHHH
Confidence 97421 111122 222333333 47899999999998 78888887655
Q ss_pred C
Q psy13961 237 P 237 (459)
Q Consensus 237 ~ 237 (459)
+
T Consensus 176 ~ 176 (179)
T 2y8e_A 176 P 176 (179)
T ss_dssp C
T ss_pred h
Confidence 4
No 40
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=6.6e-19 Score=155.81 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=100.0
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
..++..+|+++|++|+|||||+++|+...- ..+....++.+.....+..
T Consensus 2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 50 (178)
T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETF-------------------------------GKQYKQTIGLDFFLRRITL 50 (178)
T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHHHGGGT-------------------------------THHHHHTTTSSEEEEEEEE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHhCcC-------------------------------CCCCCCceeEEEEEEEEEe
Confidence 456789999999999999999999974311 0011112222233334444
Q ss_pred CC---EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEc
Q psy13961 83 SK---FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNK 154 (459)
Q Consensus 83 ~~---~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK 154 (459)
.+ ..+.||||||+++|...+...+..+|++++|+|+++.. .+. ....++..+.. .+.|.+++|+||
T Consensus 51 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 51 PGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ---SFE---NLEDWYTVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp TTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHHHHTCCCEEEEEEEC
T ss_pred CCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhcccCCCCeEEEEEEc
Confidence 43 78999999999999888888899999999999998652 121 22233333333 267767888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+.. +... ++...+.+..+ ++++++||++|+|+
T Consensus 125 ~Dl~~~~--~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 125 IDLEHMR--TIKP----EKHLRFCQENG-----FSSHFVSAKTGDSV 160 (178)
T ss_dssp GGGGGGC--SSCH----HHHHHHHHHHT-----CEEEEECTTTCTTH
T ss_pred ccccccc--ccCH----HHHHHHHHHcC-----CcEEEEeCCCCCCH
Confidence 9996411 1111 12233333334 46899999999999
No 41
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-19 Score=160.79 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=97.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|+.|+|||||+++|+... +. . ...|+......+..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~----------------------~~-----~-------~~~t~~~~~~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNE----------------------VV-----H-------TSPTIGSNVEEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS----------------------CE-----E-------EECCSCSSCEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC----------------------CC-----c-------CcCCCccceEEEEECC
Confidence 567899999999999999999997321 00 0 0113333344566678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .+.| +++|+||+|+.+.
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RIS---VTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT---THH---HHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhchhhCCCe-EEEEEECCCCcCC
Confidence 99999999999999888888889999999999998752 121 23333333332 4677 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ...+....++++++||++|+|+
T Consensus 133 ----~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 133 ----MTVAEISQFLK----LTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp ----CCHHHHHHHHT----GGGCCSSCEEEEECBTTTTBTH
T ss_pred ----CCHHHHHHHhC----hhhhcCCCcEEEEccCCCCcCH
Confidence 11233333322 1112223468999999999999
No 42
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1.5e-19 Score=166.50 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=112.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-eCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TSK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~ 84 (459)
..++|+++|+.|+|||||+++|+..... + ......|.|.+..+..+. ..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~~~~~~~ 78 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------A------FASKTPGRTQHINYFSVGPAAE 78 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------S------CTTCCCCSCCCEEEEEESCTTS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------e------eecCCCCcccceEEEEecCCCC
Confidence 4579999999999999999999743210 0 001123455555555555 556
Q ss_pred EEEEEEeCCCcc----------chH---hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEE
Q psy13961 85 FYVTIIDAPGHR----------DFI---KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 151 (459)
Q Consensus 85 ~~~~liDtpG~~----------~~~---~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivv 151 (459)
..+.||||||+. .|. ...+.....+|++++|+|++++..+ ...+.+..+...++| +++|
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~l~~~~~p-~i~v 150 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE-------LDRRMIEWFAPTGKP-IHSL 150 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-------HHHHHHHHHGGGCCC-EEEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCC-EEEE
Confidence 889999999963 222 2334444558999999999876322 455566677778899 8899
Q ss_pred EEccCCCCCCCcHHHHHHHHHHHHhhhhhc---CcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhH
Q psy13961 152 VNKMDSTEPPYSEARFEEIKKEVSGYIKKI---GYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCL 228 (459)
Q Consensus 152 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~---g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~L 228 (459)
+||+|+.+. ....+..+++.+.+..+ +. ....+++++||++|+|+ .+|
T Consensus 151 ~nK~Dl~~~----~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv------------------------~~l 201 (223)
T 4dhe_A 151 LTKCDKLTR----QESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGL------------------------DDA 201 (223)
T ss_dssp EECGGGSCH----HHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSH------------------------HHH
T ss_pred EeccccCCh----hhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCH------------------------HHH
Confidence 999999862 33333444444444332 11 13468999999999999 788
Q ss_pred HHhccccCCCC
Q psy13961 229 IEALDAILPPS 239 (459)
Q Consensus 229 l~~l~~~~~~~ 239 (459)
++.|.+.+++.
T Consensus 202 ~~~l~~~~~~~ 212 (223)
T 4dhe_A 202 HALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHhcCcc
Confidence 88887776543
No 43
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=1.6e-19 Score=183.29 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=110.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.....+ .....|+|.+.....++.++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECCe
Confidence 45899999999999999999997432110 112347788777777888899
Q ss_pred EEEEEeCCCc----------cchHhH-HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 86 YVTIIDAPGH----------RDFIKN-MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~----------~~~~~~-~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+.||||||+ +.|... ...++..+|++++|+|++++..+ |..+++..+...+.| +++|+||
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~-------~~~~~~~~~~~~~~~-iiiv~NK 295 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-------QDKRIAGYAHEAGKA-VVIVVNK 295 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-------HHHHHHHHHHHTTCE-EEEEEEC
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcH-------HHHHHHHHHHHcCCc-EEEEEEC
Confidence 9999999998 445433 34577889999999999987543 777777777778888 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
+|+.+. .+..++++.+++...+.... .++++++||++|+|+.+.
T Consensus 296 ~Dl~~~--~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l 339 (436)
T 2hjg_A 296 WDAVDK--DESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTL 339 (436)
T ss_dssp GGGSCC--CTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGH
T ss_pred ccCCCc--chHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHH
Confidence 999863 23334556666655554332 357999999999999664
No 44
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=3e-19 Score=156.47 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=107.9
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
.+++..+|+++|++|+|||||+++|+...-. . ..+...|.+.......+..
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFH---------------------------E--FQESTIGAAFLTQTVCLDD 52 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------T--TCCCCSSEEEEEEEEEETT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCC---------------------------C--CCCCccceEEEEEEEEECC
Confidence 3466789999999999999999999742110 0 0001123333333333333
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
....+.||||||+++|...+...+..+|++++|+|+++.. .+. ....++..+... ++| +++|.||+|+.+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~ 125 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE---SFA---RAKNWVKELQRQASPNIV-IALSGNKADLAN 125 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECccCcc
Confidence 4578999999999999988888899999999999998652 111 233333333332 566 788889999864
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
.. +...+ +...+....+ ++++++||++|+|+ ++|++.|.+.++
T Consensus 126 ~~--~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi------------------------~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 KR--AVDFQ----EAQSYADDNS-----LLFMETSAKTSMNV------------------------NEIFMAIAKKLP 168 (170)
T ss_dssp GC--CSCHH----HHHHHHHHTT-----CEEEECCTTTCTTH------------------------HHHHHHHHHTSC
T ss_pred cc--ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCH------------------------HHHHHHHHHHHh
Confidence 21 11112 2223333333 47899999999999 788888876554
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=2.8e-19 Score=161.31 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=101.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+..+|+++|+.|+|||||+++|+...-. . .....|+......++..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--------------------------~------~~~~~t~~~~~~~~~~~ 61 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSS--------------------------S------KHITATVGYNVETFEKG 61 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC------------------------------------CCCCCSSEEEEEEEET
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCc--------------------------c------cccccccceeEEEEEeC
Confidence 345789999999999999999999632100 0 00112333444556778
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-----------CCceEEEEE
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-----------GVKQLIVGV 152 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-----------~ip~iivvi 152 (459)
...+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+... ++| +++|+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~ 134 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHL---RLC---VVKSEIQAMLKHEDIRRELPGGGRVP-FLFFA 134 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGG---GHH---HHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHH---HHH---HHHHHHHHHHhChhhhhcccccCCCC-EEEEE
Confidence 899999999999999988888899999999999998762 121 233344433332 788 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+.+. ...+++.+.+... .+ .....++++++||++|+|+
T Consensus 135 NK~Dl~~~----~~~~~~~~~~~~~--~~-~~~~~~~~~~~Sa~~g~gv 176 (199)
T 4bas_A 135 NKMDAAGA----KTAAELVEILDLT--TL-MGDHPFVIFASNGLKGTGV 176 (199)
T ss_dssp ECTTSTTC----CCHHHHHHHHTHH--HH-HTTSCEEEEECBTTTTBTH
T ss_pred ECcCCCCC----CCHHHHHHHhcch--hh-ccCCeeEEEEeeCCCccCH
Confidence 99999863 1122333333211 00 0113468999999999998
No 46
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=6.1e-19 Score=154.88 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|++|+|||||+++|+...- .. ...|+......+.+.
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~ 49 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEV---------------------------VT-------TIPTIGFNVETVTYK 49 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSC---------------------------CC-------CCCCSSEEEEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCC---------------------------CC-------cCCcCccceEEEEEC
Confidence 34578999999999999999999964210 00 112333344556677
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~ 159 (459)
...+.+|||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..... .++| +++|+||+|+.+
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD---RIG---ISKSELVAMLEEEELRKAI-LVVFANKQDMEQ 122 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT---THH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhchhhCCCE-EEEEEECCCCcC
Confidence 899999999999999888888899999999999998652 111 22333332222 4677 899999999976
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+++.+.+... ......++++++||++|+|+
T Consensus 123 ~----~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 123 A----MTSSEMANSLGLP----ALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp C----CCHHHHHHHHTGG----GCTTSCEEEEECCTTTCTTH
T ss_pred C----CCHHHHHHHhCch----hccCCceEEEECcCCCCcCH
Confidence 3 1123333333211 11223468999999999999
No 47
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=6.7e-19 Score=153.00 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|+.|+|||||+++|+...... .+...+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 589999999999999999997432110 01122445555566677788899
Q ss_pred EEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 88 TIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 88 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
.||||||+.+ +...+...+..+|++++|+|++.+..+ ...+....+...++| +++|+||+|+.+.
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQ-------ADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCH-------HHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccH-------hHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999987 455566778899999999999875221 334455556667889 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+++.++. .+++ .+++++||++|+|+
T Consensus 124 ----------~~~~~~~~-~~~~----~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 124 ----------ELYLGPLY-GLGF----GDPIPTSSEHARGL 149 (161)
T ss_dssp ----------GGGCGGGG-GGSS----CSCEECBTTTTBSH
T ss_pred ----------hHhHHHHH-hCCC----CCeEEEecccCCCh
Confidence 12233333 3443 25899999999999
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=159.61 Aligned_cols=150 Identities=13% Similarity=0.186 Sum_probs=101.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|+.|+|||||+++|+....... ....|+......+..++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--------------------------------NILPTIGFSIEKFKSSS 66 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS--------------------------------SCCCCSSEEEEEEECSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC--------------------------------CcCCccceeEEEEEECC
Confidence 4568999999999999999999964321000 01223344445566678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEccCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKMDST 158 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~D~~ 158 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 139 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL---RMV---VAKEELDTLLNHPDIKHRRIP-ILFFANKMDLR 139 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHH---HHH---HHHHHHHHHHHSTTTTTSCCC-EEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHhChhhccCCCe-EEEEEeCcCcc
Confidence 89999999999999888888899999999999998652 111 23333333332 3678 89999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+. ...+++.+.+. ...+....++++++||++|+|+
T Consensus 140 ~~----~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 140 DA----VTSVKVSQLLC----LENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp TC----CCHHHHHHHHT----GGGCCSSCEEEEECBTTTTBTH
T ss_pred cC----CCHHHHHHHhC----hhhccCCceEEEEccCCCCcCH
Confidence 63 12233333221 1112223568999999999998
No 49
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.79 E-value=4.4e-19 Score=157.93 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=99.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|+.|+|||||+++|+... + .. ...|+......+..++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~----------------------~--~~----------~~~t~~~~~~~~~~~~ 64 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNE----------------------V--VH----------TSPTIGSNVEEIVINN 64 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTS----------------------C--EE----------EECCSSSSCEEEEETT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCC----------------------C--Cc----------cCCcCceeeEEEEECC
Confidence 456899999999999999999997421 0 00 0112223334556678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 137 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE---RIS---VTREELYKMLAHEDLRKAG-LLIFANKQDVKEC 137 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT---THH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhChhhCCCe-EEEEEECCCcccC
Confidence 99999999999999888888899999999999998752 121 23333433332 4677 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ...+....++++++||++|+|+
T Consensus 138 ----~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 138 ----MTVAEISQFLK----LTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp ----CCHHHHHHHTT----GGGCCSSCEEEEECBTTTTBTH
T ss_pred ----CCHHHHHHHhC----cccccCCceEEEEccCCCCcCH
Confidence 11223333221 1112223468999999999998
No 50
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.79 E-value=1.2e-18 Score=151.90 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=97.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
++|+++|++|+|||||+++|+...- .+. ..|+......++..+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI---------------------------VTT-------IPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS---------------------------SCC-------CCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc---------------------------Ccc-------cCcCceeEEEEEECCEEE
Confidence 4799999999999999999974310 010 113333344566678899
Q ss_pred EEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCCc
Q psy13961 88 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 88 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~~ 163 (459)
.||||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+.. .+.| +++|+||+|+.+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--- 116 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVN---EAREELMRMLAEDELRDAV-LLVFANKQDLPNA--- 116 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC---
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHhchhhcCCe-EEEEEECcCCcCC---
Confidence 99999999999888888899999999999998652 121 22233333222 2677 8999999999763
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|.|+
T Consensus 117 -~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi 149 (164)
T 1r8s_A 117 -MNAAEITDKLG----LHSLRHRNWYIQATCATSGDGL 149 (164)
T ss_dssp -CCHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTH
T ss_pred -CCHHHHHHHhC----cccccCccEEEEEcccCCCcCH
Confidence 11233333222 1111123467999999999998
No 51
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.79 E-value=6.4e-19 Score=157.35 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=100.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+... .. . ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD-------------------------T-------ISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS-------------------------S-------CCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC-------------------------c-------ccccCccceEEEEECC
Confidence 567899999999999999999997422 10 0 0113333344556678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ---RMQ---DCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 99999999999999888888899999999999998652 111 22333333322 3677 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|+|+
T Consensus 135 ----~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 135 ----LSCNAIQEALE----LDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp ----CCHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTH
T ss_pred ----CCHHHHHHHhC----hhhccCCceEEEEeeCCCCCCH
Confidence 12233333221 1111223568999999999998
No 52
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.3e-19 Score=158.10 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=109.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|+.|+|||||+++|+...-. . ......|.+.......+...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~ 70 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFD---------------------------H--NISPTIGASFMTKTVPCGNE 70 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCC---------------------------T--TCCCCSSEEEEEEEEECSSS
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCC---------------------------C--CcCCCcceeEEEEEEEeCCE
Confidence 345789999999999999999999743100 0 00011234443333344445
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|+++... +. .....+..+... ++| +++|+||+|+.+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---FY---TLKKWVKELKEHGPENIV-MAIAGNKCDLSDI 143 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---HH---HHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 6789999999999999888888999999999999987521 11 233344444433 677 8999999999641
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
.+... +++..+.+..+ ++++++||++|.|+ ++|++.|.+.++.
T Consensus 144 --~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi------------------------~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 144 --REVPL----KDAKEYAESIG-----AIVVETSAKNAINI------------------------EELFQGISRQIPP 186 (192)
T ss_dssp --CCSCH----HHHHHHHHTTT-----CEEEECBTTTTBSH------------------------HHHHHHHHHTCC-
T ss_pred --cccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCH------------------------HHHHHHHHHHHHh
Confidence 11112 22333444433 47999999999999 7888888776543
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=5.1e-19 Score=180.60 Aligned_cols=156 Identities=18% Similarity=0.287 Sum_probs=115.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|++|+|||||+++|+...... .....|+|.+.....++..+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECC------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeEEEEEEEEEEECC
Confidence 346899999999999999999997422111 01123667777777788888
Q ss_pred EEEEEEeCCC----------ccchHhH-HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 85 FYVTIIDAPG----------HRDFIKN-MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG----------~~~~~~~-~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
..+.|||||| +++|... ...++..+|++|+|+|++++..+ +..+++..+...++| +++|+|
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-------~~~~~~~~~~~~~~~-~ilv~N 314 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-------QDKRIAGYAHEAGKA-VVIVVN 314 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-------HHHHHHHHHHHTTCE-EEEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-------HHHHHHHHHHHcCCC-EEEEEE
Confidence 9999999999 6677554 34578899999999999987544 888888888889999 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
|+|+.+. .+..++++.+.++..+...++ ++++++||++|+|+.+.
T Consensus 315 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~SA~~g~gv~~l 359 (456)
T 4dcu_A 315 KWDAVDK--DESTMKEFEENIRDHFQFLDY----APILFMSALTKKRIHTL 359 (456)
T ss_dssp CGGGSCC--CSSHHHHHHHHHHHHCGGGTT----SCEEECCTTTCTTGGGH
T ss_pred ChhcCCC--chHHHHHHHHHHHHhcccCCC----CCEEEEcCCCCcCHHHH
Confidence 9999862 334556666777666554433 57999999999999543
No 54
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=2.2e-19 Score=170.92 Aligned_cols=143 Identities=24% Similarity=0.344 Sum_probs=100.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.++|+++|++|+|||||+++|+... + .+ ....|+|++.....++..+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~----------------------~---~v------~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR----------------------Q---RV------GNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC----------------------E---EE------EECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC----------------------c---cc------CCCCCeeEEEEEEEEEeCCC
Confidence 46899999999999999999997421 0 01 11247788888888888889
Q ss_pred EEEEEeCCCccchHh---------HHH-H--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 86 YVTIIDAPGHRDFIK---------NMI-T--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 86 ~~~liDtpG~~~~~~---------~~~-~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
.+.||||||+.+|.. .+. . ....+|++|+|+|++.. + ........+..+++| +++|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~-------~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--E-------RNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--H-------HHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--H-------HHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999988752 111 1 23689999999999752 1 444555666778999 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+........ ..+.+.+| ++++++||++|.|+
T Consensus 121 K~Dl~~~~~~~~~~-------~~l~~~lg-----~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 121 MLDIAEKQNIRIEI-------DALSARLG-----CPVIPLVSTRGRGI 156 (274)
T ss_dssp CHHHHHHTTEEECH-------HHHHHHHT-----SCEEECCCGGGHHH
T ss_pred CccchhhhhHHHHH-------HHHHHhcC-----CCEEEEEcCCCCCH
Confidence 99986421111111 12222334 36999999999998
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.6e-18 Score=151.73 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=104.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.++|+++|+.|+|||||+++|+...-.. .. ....|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------------------~~---~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------------------NK---EPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------------------TC---CCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------------------CC---CCccceeEEEEEEEECCEEE
Confidence 56899999999999999999997432100 00 00112222222223333345
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+.+.+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---FI---KARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 89999999999999988889999999999999986521 11 22223333332 3677 889999999975311
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
..... .++...+.+..+ ++++++||++|.|+ .+|++.|.+.++
T Consensus 126 ~~~v~---~~~~~~~~~~~~-----~~~~~~Sa~~~~gi------------------------~~l~~~l~~~i~ 168 (170)
T 1ek0_A 126 ERKVA---REEGEKLAEEKG-----LLFFETSAKTGENV------------------------NDVFLGIGEKIP 168 (170)
T ss_dssp CCCSC---HHHHHHHHHHHT-----CEEEECCTTTCTTH------------------------HHHHHHHHTTSC
T ss_pred ccCCC---HHHHHHHHHHcC-----CEEEEEeCCCCCCH------------------------HHHHHHHHHHHh
Confidence 00111 112222333333 37899999999999 788888876543
No 56
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=155.81 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=100.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...-. .+...+++.+.....+..++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 62 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT-------------------------------ESYISTIGVDFKIRTIELDG 62 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEECC
Confidence 34689999999999999999999742110 01112344444445555555
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. .....+..+... ++| +++|+||+|+.+
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE---SFN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 67999999999999998999999999999999998752 121 233333333333 677 888899999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +...+ +...+...++ ++++++||++|.|+
T Consensus 136 ~~--~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 136 KK--VVDYT----TAKEFADSLG-----IPFLETSAKNATNV 166 (196)
T ss_dssp TC--CSCHH----HHHHHHHHTT-----CCEEEECTTTCTTH
T ss_pred cc--ccCHH----HHHHHHHHcC-----CcEEEEeCCCCCCH
Confidence 31 11111 2223333333 36999999999999
No 57
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1.7e-18 Score=155.56 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=98.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+...- . ....|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRL--A--------------------------------TLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCC--C--------------------------------CCCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--C--------------------------------ccccCCCCCeEEEEECC
Confidence 4567999999999999999999974210 0 01123333345566778
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.++||||+++|...+...++.+|++++|+|+++.. .+. .....+..+. ..+.| +++|+||+|+.+.
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE---RFD---EARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH---HHH---HHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 99999999999999887778889999999999998752 111 2233333332 24677 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcC-------cCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIG-------YNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g-------~~~~~~~~i~iSa~~g~~i 201 (459)
. ..+++.+ .+.... .....++++++||++|+|+
T Consensus 140 -~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 140 -V---SEAELRS----ALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp -C---CHHHHHH----HTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred -C---CHHHHHH----HhCCccccccccccccceEEEEEeECCcCCCH
Confidence 1 1223322 222111 0113468999999999999
No 58
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.78 E-value=1.9e-18 Score=153.91 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=98.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+...+|+++|++|+|||||+++|+... + .. ...|+......+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~----------------------~--~~----------~~~t~g~~~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED----------------------I--SH----------ITPTQGFNIKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC----------------------C--EE----------EEEETTEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC----------------------C--Cc----------ccCcCCeEEEEEEECC
Confidence 567899999999999999999996310 0 00 0112222233456668
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+..++..+|++++|+|+++.. .+. ...+.+..+. ..++| +++|+||+|+.+.
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK---RFE---ETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG---GHH---HHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH---HHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 89999999999999988888899999999999998652 111 2223333221 24677 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ..+++.+.+. ........++++++||++|+|+
T Consensus 133 ~----~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 133 A----PASEIAEGLN----LHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp C----CHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTH
T ss_pred C----CHHHHHHHhC----chhccCCceEEEEccCCCCCCH
Confidence 1 1223322221 1111223568999999999999
No 59
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=1.3e-18 Score=156.61 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=95.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+... + .. ...|+......++..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~----------------------~-----~~-------~~~t~~~~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VT-------TIPTIGFNVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC----------------------C-----EE-------EEEETTEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC----------------------c-----cc-------cCCcCceeEEEEEECC
Confidence 567899999999999999999995210 0 00 0113333444566788
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 145 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVQ---ESADELQKMLQEDELRDAV-LLVFANKQDMPNA 145 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHhcccccCCCe-EEEEEECCCCCCC
Confidence 99999999999999888888889999999999998652 121 22333333322 2677 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+.. .......++++++||++|.|+
T Consensus 146 ----~~~~~i~~~~~~----~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 146 ----MPVSELTDKLGL----QHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp ----CCHHHHHHHTTG----GGCSSCCEEEEECBTTTTBTH
T ss_pred ----CCHHHHHHHhCc----ccccCCceEEEECcCCCcCCH
Confidence 112333333221 111223468999999999998
No 60
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=4.5e-18 Score=155.54 Aligned_cols=120 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|..+++..+|+++|++|+|||||+++|+... .. . ...|+...+..+
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~--~~-------------------------~-------~~~~~~~~~~~~ 46 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQ--YR-------------------------D-------TQTSITDSSAIY 46 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHSC--CC-------------------------C-------BCCCCSCEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCC--cc-------------------------c-------ccCCcceeeEEE
Confidence 5566778999999999999999999997532 00 0 011122222234
Q ss_pred eeC---CEEEEEEeCCCccchHh-HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHH-HH-----HcCCceEEE
Q psy13961 81 ETS---KFYVTIIDAPGHRDFIK-NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL-AF-----TLGVKQLIV 150 (459)
Q Consensus 81 ~~~---~~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~-~~-----~~~ip~iiv 150 (459)
..+ ...+.|||||||++|.. .+...+..+|++|+|+|++.. +..+. ...+.+.. +. ..++| +++
T Consensus 47 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~p-iil 120 (214)
T 2fh5_B 47 KVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--QREVK---DVAEFLYQVLIDSMALKNSPS-LLI 120 (214)
T ss_dssp ECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--HHHHH---HHHHHHHHHHHHHHTSTTCCE-EEE
T ss_pred EecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--CHHHH---HHHHHHHHHHhhhhhcccCCC-EEE
Confidence 444 57899999999999988 455668899999999999752 10000 11222221 11 12577 899
Q ss_pred EEEccCCCCC
Q psy13961 151 GVNKMDSTEP 160 (459)
Q Consensus 151 viNK~D~~~~ 160 (459)
|+||+|+.+.
T Consensus 121 v~nK~Dl~~~ 130 (214)
T 2fh5_B 121 ACNKQDIAMA 130 (214)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCCCCc
Confidence 9999999864
No 61
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=9e-19 Score=155.88 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=75.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...- ..+...+++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF-------------------------------NSTFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCcccceeEEEEEEECC
Confidence 4568999999999999999999963210 001112233344444444444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+++..+.. .++| +++|+||+|+.+
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK---SFD---NIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 78999999999999887778889999999999998652 111 23334444443 2677 899999999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +... +++..+.+..+ ++++++||++|+|+
T Consensus 128 ~~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 128 KR--QVSK----ERGEKLALDYG-----IKFMETSAKANINV 158 (183)
T ss_dssp CC--CSCH----HHHHHHHHHHT-----CEEEECCC---CCH
T ss_pred cC--cCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 21 1111 22233334444 37899999999999
No 62
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=1.7e-18 Score=154.35 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=98.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+..... ......++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-------------------------------DDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 44689999999999999999999743211 01112233344344444444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH---HcCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF---TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~---~~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...+..+|++|+|+|++.... +. .....+..+. ..++| +++|+||+|+.+
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 689999999999999988889999999999999987521 11 2222332222 24677 899999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+.... +...+.+..+ ++++++||++|+|+
T Consensus 130 ~--~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 130 D--REVTFL----EASRFAQENE-----LMFLETSALTGENV 160 (186)
T ss_dssp G--CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTH
T ss_pred c--cccCHH----HHHHHHHHcC-----CEEEEecCCCCCCH
Confidence 1 111112 2223333333 47999999999998
No 63
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.77 E-value=4.5e-19 Score=155.46 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=99.0
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
+..+.++|+++|++|+|||||+++|+...-. . ......|.+.......+..
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFD--------------------------P---NINPTIGASFMTKTVQYQN 52 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------------------T---TCCCCCSEEEEEEEEEETT
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCC--------------------------C---CCCCceeEEEEEEEEEECC
Confidence 3456789999999999999999999743200 0 0001123333333333333
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
....+.||||||+++|...+...+..+|++++|+|+++... +. ....++..+... ++| +++|+||+|+.+
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~ 125 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---FS---TLKNWVRELRQHGPPSIV-VAIAGNKCDLTD 125 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCTTSE-EEEEEECTTCGG
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECCcccc
Confidence 44789999999999998888888999999999999986521 11 223333444433 456 888899999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +... ++...+.+..+ ++++++||++|.|+
T Consensus 126 ~~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 126 VR--EVME----RDAKDYADSIH-----AIFVETSAKNAINI 156 (170)
T ss_dssp GC--CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSH
T ss_pred cc--ccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCH
Confidence 21 1111 12222333333 47999999999998
No 64
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=2.5e-18 Score=150.71 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=94.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
.++|+++|++|+|||||+++|+...-. ......++.+.....+..+ .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-------------------------------PSFITTIGIDFKIKTVDINGKK 51 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-------------------------------C-------CCEEEEEEESSSCE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------CCCCCccceeEEEEEEEECCEE
Confidence 579999999999999999999742110 0011122223333334433 3
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+.+..
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~ 124 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---FT---NIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRV 124 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCTTCC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccCCcCc
Confidence 588999999999998888888899999999999986521 11 22333333333 2677 89999999995432
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+ +...+.+..+ ++++++||++|.|+
T Consensus 125 ~~~~-------~~~~~~~~~~-----~~~~~~Sa~~~~gv 152 (170)
T 1g16_A 125 VTAD-------QGEALAKELG-----IPFIESSAKNDDNV 152 (170)
T ss_dssp SCHH-------HHHHHHHHHT-----CCEEECBTTTTBSH
T ss_pred cCHH-------HHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 2221 2223333344 36899999999998
No 65
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.77 E-value=8.7e-19 Score=157.62 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=97.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeee-----
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALW----- 78 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~----- 78 (459)
....++|+++|++|+|||||++.|........ . ............|+...+.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---------------------~--~~~~~~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---------------------K--GEMVSLATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---------------------B--CCCEEEECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccc---------------------c--ccccccccccccceeeeecccccc
Confidence 45678999999999999999966642111000 0 0000000001123333322
Q ss_pred EEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH----HHHH-----cCCceEE
Q psy13961 79 KFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL----LAFT-----LGVKQLI 149 (459)
Q Consensus 79 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~----~~~~-----~~ip~ii 149 (459)
.++.....+.||||||+++|...+...++.+|++|+|+|++.+... +..+.+. .+.. .++| ++
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~-------~~~~s~~~l~~~l~~~~~~~~~~p-ii 139 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR-------ANAESMRNMRENLAEYGLTLDDVP-IV 139 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH-------HHHHHHHHHHHHHHHTTCCTTSSC-EE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh-------HhHHHHHHHHHHHHhhccccCCCC-EE
Confidence 2233456899999999999999999999999999999999855322 2222222 2222 4678 88
Q ss_pred EEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 150 VGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 150 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+||+|+.+. .. .+++.++++..++ .+++++||++|+|+
T Consensus 140 lv~NK~Dl~~~----~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv 179 (198)
T 3t1o_A 140 IQVNKRDLPDA----LP----VEMVRAVVDPEGK----FPVLEAVATEGKGV 179 (198)
T ss_dssp EEEECTTSTTC----CC----HHHHHHHHCTTCC----SCEEECBGGGTBTH
T ss_pred EEEEchhcccc----cC----HHHHHHHHHhcCC----ceEEEEecCCCcCH
Confidence 99999999763 11 2233444444433 26899999999998
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.77 E-value=4.4e-18 Score=153.71 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=68.6
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCCCCCc
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~~~~~ 163 (459)
..+.||||||+++|...+...+..+|++|+|+|++.+.. +. ....++..+. ..+.| +++|+||+|+...
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~p-iilv~NK~D~~~~--- 162 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---LD---RAKTWVNQLKISSNYI-IILVANKIDKNKF--- 162 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCCE-EEEEEECTTCC-C---
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhhCCCc-EEEEEECCCcccc---
Confidence 789999999999999988899999999999999987521 10 2233333333 35666 8999999994321
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+...+ ++..+++..+ ++++++||++|.|+
T Consensus 163 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 163 QVDIL----EVQKYAQDNN-----LLFIQTSAKTGTNI 191 (208)
T ss_dssp CSCHH----HHHHHHHHTT-----CEEEEECTTTCTTH
T ss_pred cCCHH----HHHHHHHHcC-----CcEEEEecCCCCCH
Confidence 12222 3333444433 47999999999998
No 67
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=153.84 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=99.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|++|+|||||+++|+... ...+...+++.+.....+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT-------------------------------FSGSYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCccCCCceeEEEEEEEEEC
Confidence 3456899999999999999999996321 011112344555555555555
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEccCCCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK~D~~~ 159 (459)
+ ..+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+... ++| +++|+||+|+.+
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---FV---NVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 5 689999999999998888888999999999999987521 11 222233333222 467 889999999875
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... ... ++...+....+ ++++++||++|.|+
T Consensus 128 ~~~--~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 128 RKV--VET----EDAYKFAGQMG-----IQLFETSAKENVNV 158 (181)
T ss_dssp GCC--SCH----HHHHHHHHHHT-----CCEEECBTTTTBSH
T ss_pred hcc--cCH----HHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 211 111 12223333334 36899999999998
No 68
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-18 Score=158.48 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=97.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...-. .+....++.+.....+..++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 72 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP-------------------------------PGQGATIGVDFMIKTVEING 72 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCCSEEEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------CCCCCccceeEEEEEEEECC
Confidence 44689999999999999999999742110 00111223333333444444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...++.+|++|+|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 145 (201)
T 2ew1_A 73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFR---CLPEWLREIEQYASNKVI-TVLVGNKIDLAE 145 (201)
T ss_dssp EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 57999999999999988888899999999999998652 121 22333333333 3567 888999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +...+ +...+.+..+ ++++++||++|+|+
T Consensus 146 ~~--~v~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 146 RR--EVSQQ----RAEEFSEAQD-----MYYLETSAKESDNV 176 (201)
T ss_dssp GC--SSCHH----HHHHHHHHHT-----CCEEECCTTTCTTH
T ss_pred cc--ccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 11 11111 2222333333 46899999999999
No 69
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=4e-18 Score=151.03 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=91.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...-... .....++.+.....+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 56 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG------------------------------TFISTVGIDFRNKVLDVD 56 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC------------------------------CCCCCCSCEEEEEEEEET
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------------------CcCCceeeEEEEEEEEEC
Confidence 45678999999999999999999975321000 001122223322233334
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~ 158 (459)
+ ..+.||||||+++|...+...+..+|++|+|+|++.... +. ...+++..+.. .++| +++|+||+|+.
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---FD---NIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 3 589999999999999888888999999999999986521 11 22333333333 4677 89999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ...+ +...+.+..+ ++++++||++|+|+
T Consensus 130 ~~~~--~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 130 HERV--VKRE----DGEKLAKEYG-----LPFMETSAKTGLNV 161 (180)
T ss_dssp SCCC--SCHH----HHHHHHHHHT-----CCEEECCTTTCTTH
T ss_pred cccc--cCHH----HHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 5211 1111 2223333334 36899999999999
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=155.81 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=97.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|+.|+|||||+++|+...- ..+....++.+.....+..++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~ 72 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTF-------------------------------CEACKSTVGVDFKIKTVELRG 72 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCCCCccceeEEEEEEEECC
Confidence 3468999999999999999999963210 001112233333334444444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...+..+|++|+|+|+++... +. ....++..+.. .++| +++|+||+|+.+
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~ 145 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 589999999999999988899999999999999987521 21 22333334433 3677 899999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+...+ +...+.+.+ ...+++++||++|+|+
T Consensus 146 ~--~~v~~~----~~~~~~~~~----~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 146 D--REITRQ----QGEKFAQQI----TGMRFCEASAKDNFNV 177 (192)
T ss_dssp G--CCSCHH----HHHHHHHTS----TTCEEEECBTTTTBSH
T ss_pred c--cccCHH----HHHHHHHhc----CCCeEEEEeCCCCCCH
Confidence 2 111112 222233322 1357899999999998
No 71
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=4.9e-19 Score=166.68 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=98.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+... ..+ ....|+|++.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-------------------------~~v------~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-------------------------QRV------GNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-------------------------EEE------EECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-------------------------CCc------cCCCCceEEEEEEEEEECCeEE
Confidence 479999999999999999996321 000 1123778888888888889999
Q ss_pred EEEeCCCccchHhH----------HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 88 TIIDAPGHRDFIKN----------MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 88 ~liDtpG~~~~~~~----------~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
.||||||+.++... ....+ ..+|++|+|+|++.. + ........+..+++| +++|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~-------~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--E-------RHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--H-------HHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--h-------hHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887542 22233 679999999999752 1 344445566667899 89999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.......... +.+ .+.+| ++++++||++|.|+
T Consensus 121 Dl~~~~~~~~~~----~~l---~~~lg-----~~vi~~SA~~g~gi 154 (256)
T 3iby_A 121 DIAEHRGISIDT----EKL---ESLLG-----CSVIPIQAHKNIGI 154 (256)
T ss_dssp HHHHHTTCEECH----HHH---HHHHC-----SCEEECBGGGTBSH
T ss_pred hcCCcCCcHHHH----HHH---HHHcC-----CCEEEEECCCCCCH
Confidence 986421111111 122 22234 47999999999998
No 72
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=7e-19 Score=156.48 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=96.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+... + .. ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~----------------------~--~~----------~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE----------------------V--VT----------TKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE----------------------E--EE----------ECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC----------------------c--Cc----------cCCcCccceEEEEECC
Confidence 567999999999999999999996210 0 00 1112223334456678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+. ..+.| +++|+||+|+.+.
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD---RMS---TASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT---THH---HHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 99999999999999888888889999999999997652 111 2333333332 24667 8999999999753
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+. +.........++++++||++|+|+
T Consensus 135 ----~~~~~i~~~----~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 135 ----LSASEVSKE----LNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp ----CCHHHHHHH----TTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred ----CCHHHHHHH----hCcccccCCceEEEEccCCCCcCH
Confidence 112233222 222222223568999999999998
No 73
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.77 E-value=9.2e-19 Score=154.81 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=97.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|+.++|||||+++|+...... .. ....|.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------------------~~---~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------------------------DC---PHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------------------SC---TTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------------------CC---CCccceEEEEEEEEECCeE
Confidence 346899999999999999999997532100 00 0111222222222333334
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...+..+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+.+.
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IILIGNKADLEAQ- 135 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGGG-
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc-
Confidence 689999999999999888889999999999999987521 11 22233333332 4677 8999999999641
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+... +++.++++..+ ++++++||++|+|+
T Consensus 136 -~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 136 -RDVTY----EEAKQFAEENG-----LLFLEASAKTGENV 165 (179)
T ss_dssp -CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTH
T ss_pred -cccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 11111 23333444433 47999999999999
No 74
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=162.19 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=93.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...- .. ......|.+.......++..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~~~~~~~ 75 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEF--RE---------------------------NISATLGVDFQMKTLIVDGE 75 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCC--C-------------------------------------CEEEEEEETTE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCC--Cc---------------------------cCCCCccceeEEEEEEECCE
Confidence 34568999999999999999999974310 00 00011122222222233333
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|+++... +. .....+..+.. .++| +++|+||+|+.+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~ 148 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---FL---NIREWVDMIEDAAHETVP-IMLVGNKADIRDT 148 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHC---CC-EEEEEECGGGHHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 4679999999999999999899999999999999986521 11 22333333333 3678 8999999998631
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+....-..++...+.+..+ ++++++||++|+|+
T Consensus 149 ~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 149 AATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNI 184 (199)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTH
T ss_pred cccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCH
Confidence 0000000000122223333333 47899999999999
No 75
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.76 E-value=3.3e-18 Score=154.76 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=95.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|++|+|||||+++|.... . . ....|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~--~-------------------------~-------~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR--L-------------------------G-------QHVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC----------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC--C-------------------------C-------ccCCCCCceeEEEEECC
Confidence 456799999999999999999995310 0 0 00113333344566777
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...++.+|++++|+|+++.. .+. .....+..+. ..++| +++|+||+|+.+.
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE---RLL---ESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG---GHH---HHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 89999999999999887778889999999999998652 111 2333333332 24678 8999999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhc--C---cC---CceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKI--G---YN---PATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~--g---~~---~~~~~~i~iSa~~g~~i 201 (459)
.. .+++.+.+....... + +. ...++++++||++|+|+
T Consensus 142 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 186 (198)
T 1f6b_A 142 -IS---EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186 (198)
T ss_dssp -CC---HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSH
T ss_pred -CC---HHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCH
Confidence 12 233333222110000 0 10 13468999999999999
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.1e-18 Score=152.47 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=96.0
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|+......+|+++|++|+|||||+++|+...-.. ...+ ..+.+.. ....+
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------------------~~~~---t~~~~~~-~~~~~ 51 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------------------------TYIP---TIEDTYR-QVISC 51 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCC--------------------------TTSC---CCCEEEE-EEEEE
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------------cccC---cccccee-EEEEE
Confidence 5566678999999999999999999997521100 0000 0011111 11112
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEcc
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKM 155 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~ 155 (459)
......+.||||||+++|...+...+..+|++++|+|++... .+. .....+..+.. .++| +++|+||+
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~ 124 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ---SLE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKC 124 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH---HHH---TTHHHHHHHHHHHSCGGGSC-EEEEEECT
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 223457899999999999988888889999999999998642 121 22233332222 3678 89999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+...... +...+...++ ++++++||++|.|+
T Consensus 125 Dl~~~~~~~~-------~~~~~~~~~~-----~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 125 DETQREVDTR-------EAQAVAQEWK-----CAFMETSAKMNYNV 158 (199)
T ss_dssp TCSSCSSCHH-------HHHHHHHHHT-----CEEEECBTTTTBSH
T ss_pred cCCccccCHH-------HHHHHHHHhC-----CeEEEEecCCCCCH
Confidence 9976322221 1222233333 36899999999998
No 77
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=2.7e-18 Score=154.99 Aligned_cols=160 Identities=15% Similarity=0.191 Sum_probs=95.4
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 81 (459)
.++..+|+++|..|+|||||+++|.... . .....+.+.......+.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~---~-----------------------------~~~~~~~~~~~~~~~~~~~ 64 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM---S-----------------------------PNETLFLESTNKIYKDDIS 64 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC---C-----------------------------GGGGGGCCCCCSCEEEEEC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC---C-----------------------------Ccceeeeccccceeeeecc
Confidence 4557899999999999999999875311 0 00111222212222222
Q ss_pred -eCCEEEEEEeCCCccchHhHH---HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH--HHcCCceEEEEEEcc
Q psy13961 82 -TSKFYVTIIDAPGHRDFIKNM---ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA--FTLGVKQLIVGVNKM 155 (459)
Q Consensus 82 -~~~~~~~liDtpG~~~~~~~~---~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~--~~~~ip~iivviNK~ 155 (459)
.....+.||||||+++|...+ ...++.+|++|+|+|+++. +...+. ...+.+... ...++| +++|.||+
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~---~~~~~l~~~~~~~~~~p-iilv~nK~ 139 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALT---RLHITVSKAYKVNPDMN-FEVFIHKV 139 (196)
T ss_dssp CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHHHHH---HHHHHHHHHHHHCTTCE-EEEEEECG
T ss_pred CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHHHHH---HHHHHHHHHHhcCCCCc-EEEEEecc
Confidence 345789999999999998776 6788899999999999875 221110 111222222 123677 89999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+.+........+..+....+.........++++++||++ .|+
T Consensus 140 Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v 184 (196)
T 3llu_A 140 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSI 184 (196)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THH
T ss_pred ccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhH
Confidence 997621111112233333222233222222357899999999 999
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.76 E-value=3.4e-18 Score=155.28 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=96.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...-.. .....++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCS-------------------------------SCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCC-------------------------------CCCCcccceEEEEEEEEC
Confidence 4567899999999999999999997532110 001122333333333333
Q ss_pred --CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-H------cCCceEEEEEEc
Q psy13961 84 --KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-T------LGVKQLIVGVNK 154 (459)
Q Consensus 84 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~------~~ip~iivviNK 154 (459)
...+.||||||+++|...+...+..+|++|+|+|++.... +. ....++..+. . .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---FK---TLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 3689999999999998888888899999999999986521 11 1222222222 1 3678 8899999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+..... + ++..+.... ..++++++||++|.|+
T Consensus 127 ~Dl~~~~~~~---~----~~~~~~~~~----~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 127 IDLENRQVAT---K----RAQAWCYSK----NNIPYFETSAKEAINV 162 (207)
T ss_dssp TTSSCCCSCH---H----HHHHHHHHT----TSCCEEECBTTTTBSH
T ss_pred CCCcccccCH---H----HHHHHHHhc----CCceEEEEeCCCCCCH
Confidence 9997532222 2 222222211 2357999999999998
No 79
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=3.4e-18 Score=155.96 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
..++|+++|++++|||||+++|+...-. .+....++.+.....+...+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 67 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-------------------------------PSFITTIGIDFKIKTVDINGK 67 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-------------------------------CSSSCCCSCCEEEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------cccCCcccceEEEEEEEECCE
Confidence 4689999999999999999999742110 00111233333344455555
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|++.... +. ....++..+... ++| +++|+||+|+...
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 140 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---FT---NIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR 140 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHTTTCSE-EEEEEECTTCSSC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 689999999999998888888899999999999986521 11 223344333332 677 8999999999543
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..... +...+.+.+++ +++++||++|+|+
T Consensus 141 ~~~~~-------~~~~~~~~~~~-----~~~~~Sa~~~~gi 169 (213)
T 3cph_A 141 VVTAD-------QGEALAKELGI-----PFIESSAKNDDNV 169 (213)
T ss_dssp CSCHH-------HHHHHHHHHTC-----CEEECBTTTTBSS
T ss_pred ccCHH-------HHHHHHHHcCC-----EEEEEeCCCCCCH
Confidence 22222 22223333343 6899999999998
No 80
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=1.8e-18 Score=166.88 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+++|+.... +...+. .+.|.+.....+...+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~------------------------~i~s~~------~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------------------------SITSRK------AQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE------------------------EECCCC------SSCCSSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc------------------------cccCCC------CCcceeeEEEEEEECCe
Confidence 456899999999999999999974321 111111 12222222233556788
Q ss_pred EEEEEeCCCcc-ch--------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 86 YVTIIDAPGHR-DF--------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 86 ~~~liDtpG~~-~~--------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
.++|+||||+. ++ ...+..++..+|++++|+|++. +. ++++..+..+...+.| +++++||+|
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~------~~~~~i~~~l~~~~~P-~ilvlNK~D 127 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR--WT------PDDEMVLNKLREGKAP-VILAVNKVD 127 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC--CC------HHHHHHHHHHHSSSSC-EEEEEESTT
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC--CC------HHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 99999999998 32 2333456788999999999975 22 2566666666666899 788899999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ...+. +.+..+.+.+++ ..++|+||++|.|+
T Consensus 128 ~~~~---~~~~~---~~l~~l~~~~~~----~~~i~iSA~~g~~v 162 (301)
T 1ega_A 128 NVQE---KADLL---PHLQFLASQMNF----LDIVPISAETGLNV 162 (301)
T ss_dssp TCCC---HHHHH---HHHHHHHTTSCC----SEEEECCTTTTTTH
T ss_pred cCcc---HHHHH---HHHHHHHHhcCc----CceEEEECCCCCCH
Confidence 9751 22232 333333333343 25899999999998
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=1.3e-18 Score=154.32 Aligned_cols=151 Identities=14% Similarity=0.169 Sum_probs=85.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|+.|+|||||+++|+...-. .+....++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYS-------------------------------QQYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC-------------------------------TTC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCC-------------------------------cccCCccceEEEEEEEEEc
Confidence 456789999999999999999999753210 0001112222222333333
Q ss_pred ---CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-------cCCceEEEEEE
Q psy13961 84 ---KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-------LGVKQLIVGVN 153 (459)
Q Consensus 84 ---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-------~~ip~iivviN 153 (459)
...+.||||||+++|...+...+..+|++|+|+|+++... +. .....+..+.. .++| +++|+|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---FE---NIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---HH---HHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 4689999999999999888888899999999999986521 11 22223322221 4678 889999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+..... ....+ ++..+.+.. ...+++++||++|+|+
T Consensus 127 K~Dl~~~~~-~v~~~----~~~~~~~~~----~~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 127 KIDAEESKK-IVSEK----SAQELAKSL----GDIPLFLTSAKNAINV 165 (182)
T ss_dssp CTTSCGGGC-CSCHH----HHHHHHHHT----TSCCEEEEBTTTTBSH
T ss_pred CCccccccc-cCCHH----HHHHHHHhc----CCCeEEEEecCCCCCH
Confidence 999964210 00111 222222211 2357899999999998
No 82
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=152.81 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=96.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+... .. .+....++.+.....+..++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 75 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA--FS-----------------------------ERQGSTIGVDFTMKTLEIQG 75 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEEEEEEETT
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC--CC-----------------------------CCCCCCcceEEEEEEEEECC
Confidence 346899999999999999999997421 00 00011122223333444444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...++.+|++|+|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 148 (201)
T 2hup_A 76 KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS---SFL---SVPHWIEDVRKYAGSNIV-QLLIGNKSDLSE 148 (201)
T ss_dssp EEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGG
T ss_pred EEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECCcccc
Confidence 68999999999999998888999999999999998652 121 23334444433 3577 888999999974
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+... +++..+.+..++ .+++++||++|+|+
T Consensus 149 ~--~~v~~----~~~~~~~~~~~~----~~~~~~SA~~g~gi 180 (201)
T 2hup_A 149 L--REVSL----AEAQSLAEHYDI----LCAIETSAKDSSNV 180 (201)
T ss_dssp G--CCSCH----HHHHHHHHHTTC----SEEEECBTTTTBSH
T ss_pred c--cccCH----HHHHHHHHHcCC----CEEEEEeCCCCCCH
Confidence 1 01111 223334444443 16899999999998
No 83
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=1.8e-18 Score=163.11 Aligned_cols=144 Identities=18% Similarity=0.224 Sum_probs=100.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+... +. . ....|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~----------------------~~---~------~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTK----------------------QY---V------ANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTC----------------------EE---E------EECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCC----------------------Cc---c------cCCCCceEEEEEEEEEECC
Confidence 457899999999999999999996321 00 0 1123788888777888888
Q ss_pred EEEEEEeCCCccchHhH-----H-HHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 85 FYVTIIDAPGHRDFIKN-----M-ITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~-----~-~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
..+.||||||+.+|... + ...+ ..+|++++|+|++.. + .....+..+..+++| +++|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~-------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--E-------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--H-------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--h-------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999999877531 1 2222 579999999999863 1 333445566667999 899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+....... .+...+.+.+| ++++++||++|.|+
T Consensus 122 l~~~~~i~-------~~~~~l~~~lg-----~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 122 EAKKTGMK-------IDRYELQKHLG-----IPVVFTSSVTGEGL 154 (258)
T ss_dssp HHHHTTCC-------BCHHHHHHHHC-----SCEEECCTTTCTTH
T ss_pred CCCccchH-------HHHHHHHHHcC-----CCEEEEEeeCCcCH
Confidence 86411100 11222333344 47999999999998
No 84
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.76 E-value=1.3e-18 Score=155.84 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=99.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+... + .. ...|+......++..+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~----------------------~-----~~-------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD----------------------V-----VT-------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC----------------------C-----EE-------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC----------------------C-----CC-------cCCCCceEEEEEEECC
Confidence 567899999999999999999995210 0 00 0112223334466678
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..... .+.| +++|+||+|+.+.
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD---RMG---VAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT---THH---HHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH---HHH---HHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 99999999999998877777888999999999998652 111 22333333322 3677 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|+|+
T Consensus 139 ----~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 139 ----ASEAEIAEQLG----VSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp ----CCHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTH
T ss_pred ----CCHHHHHHHhC----hhhccCCceEEEEccCCCccCH
Confidence 11223333322 1111223468999999999999
No 85
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=4e-18 Score=152.71 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=96.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee-eeEEeeC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA-LWKFETS 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~ 83 (459)
...++|+++|++|+|||||+++|+...-. . +....+..+.. ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------~----~~~~t~~~~~~~~~~~~~~ 57 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN---------------------------S----KFITTVGIDFREKRVVYRA 57 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------------C----SCCCCCSEEEEEEEEEECT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC---------------------------c----CcccccceeeeeEEEEEec
Confidence 44689999999999999999999742110 0 00001111111 1122222
Q ss_pred -----------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceE
Q psy13961 84 -----------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQL 148 (459)
Q Consensus 84 -----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~i 148 (459)
...+.|+||||+++|...+...+..+|++|+|+|++.... +. ...+.+..+.. .++| +
T Consensus 58 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-i 130 (195)
T 3bc1_A 58 NGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS---FL---NVRNWISQLQMHAYSENPD-I 130 (195)
T ss_dssp TSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSSSSSCC-E
T ss_pred CCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-E
Confidence 4689999999999999999999999999999999986521 11 22334433333 4677 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++|+||+|+.+.. +.. .+++..+....+ ++++++||++|.|+
T Consensus 131 ilv~nK~Dl~~~~--~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 131 VLCGNKSDLEDQR--AVK----EEEARELAEKYG-----IPYFETSAANGTNI 172 (195)
T ss_dssp EEEEECTTCGGGC--CSC----HHHHHHHHHHHT-----CCEEECCTTTCTTH
T ss_pred EEEEECccccccc--ccC----HHHHHHHHHHcC-----CCEEEEECCCCCCH
Confidence 9999999996411 111 122333333444 36899999999998
No 86
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=5.5e-18 Score=152.38 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|++|+|||||+++|+...- .. ......|.|.+..+..+ +.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~---~~ 69 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKN-LA----------------------------RTSSKPGKTQTLNFYII---ND 69 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---TT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-cc----------------------------ccCCCCCceeeEEEEEE---CC
Confidence 468999999999999999999974210 00 00011234444433332 23
Q ss_pred EEEEEeCCC----------ccchHhHHHHhhccc---CEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEE
Q psy13961 86 YVTIIDAPG----------HRDFIKNMITGTSQA---DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 86 ~~~liDtpG----------~~~~~~~~~~~~~~a---D~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivvi 152 (459)
.+.|||||| ++.|...+...+..+ |++++|+|++.+... +..+.+..+...++| +++|+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~i~v~ 141 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN-------DDVQMYEFLKYYGIP-VIVIA 141 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-------HHHHHHHHHHHTTCC-EEEEE
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEE
Confidence 689999999 566655555555444 999999999876321 334445566667889 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+.+. .......+++.+.+. .. ...+++++||++|+|+
T Consensus 142 nK~Dl~~~----~~~~~~~~~~~~~~~---~~-~~~~~~~~Sa~~~~gv 182 (195)
T 1svi_A 142 TKADKIPK----GKWDKHAKVVRQTLN---ID-PEDELILFSSETKKGK 182 (195)
T ss_dssp ECGGGSCG----GGHHHHHHHHHHHHT---CC-TTSEEEECCTTTCTTH
T ss_pred ECcccCCh----HHHHHHHHHHHHHHc---cc-CCCceEEEEccCCCCH
Confidence 99999862 223334444444332 11 2467999999999999
No 87
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=4.2e-18 Score=148.77 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+++|+... .. ....+ ..+... .....++....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~--~~------------------------~~~~~---t~~~~~-~~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGI--FV------------------------EKYDP---TIEDSY-RKQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC--CC------------------------CSCCC---CSEEEE-EEEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--CC------------------------CCCCC---CccceE-EEEEEECCEEE
Confidence 56899999999999999999997421 10 00000 001111 01112223456
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~ 161 (459)
.+.||||||+++|...+...+..+|++++|+|++... .+. .....+..+.. .++| +++|+||+|+.+..
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---TFN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 8999999999999988888899999999999998642 121 22223322222 3778 88999999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+...+ ++..+.+.+ ...+++++||++|.|+
T Consensus 125 --~~~~~----~~~~~~~~~----~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 125 --VVGKE----QGQNLARQW----CNCAFLESSAKSKINV 154 (167)
T ss_dssp --CSCHH----HHHHHHHHT----TSCEEEECBTTTTBSH
T ss_pred --cCCHH----HHHHHHHHc----cCCcEEEecCCCCCCH
Confidence 11112 222333332 1357999999999999
No 88
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=7.6e-19 Score=176.11 Aligned_cols=143 Identities=22% Similarity=0.221 Sum_probs=101.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.... ...+...|+|++.....++..+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~------------------------------~~~~~~~gtT~d~~~~~~~~~~~ 82 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNV------------------------------SIVSDYAGTTTDPVYKSMELHPI 82 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCC------------------------------CccCCCCCeeeeeEEEEEEECCC
Confidence 467999999999999999999964211 01123457788888777777664
Q ss_pred -EEEEEeCCCccchH-------hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 -YVTIIDAPGHRDFI-------KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 -~~~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.|||||||.+|. ..+...+..+|++|+|+|+ +..+ ++.+++..+...++| +++|+||+|+
T Consensus 83 ~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~-------~~~~~l~~l~~~~~p-iIvV~NK~Dl 152 (423)
T 3qq5_A 83 GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTP-------YEDDVVNLFKEMEIP-FVVVVNKIDV 152 (423)
T ss_dssp EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCH-------HHHHHHHHHHHTTCC-EEEECCCCTT
T ss_pred CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChH-------HHHHHHHHHHhcCCC-EEEEEeCcCC
Confidence 99999999998763 3356678889999999998 3222 778888889999999 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.... + ....+.+.++ ++++++||++|+|+
T Consensus 153 ~~~~~~-----~---~~~~l~~~~g-----~~v~~vSAktg~gI 183 (423)
T 3qq5_A 153 LGEKAE-----E---LKGLYESRYE-----AKVLLVSALQKKGF 183 (423)
T ss_dssp TTCCCT-----H---HHHHSSCCTT-----CCCCCCSSCCTTST
T ss_pred CCccHH-----H---HHHHHHHHcC-----CCEEEEECCCCCCH
Confidence 864211 2 2222222333 47899999999999
No 89
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=4.9e-18 Score=152.39 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=97.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|+.|+|||||+++|+...... .. ...|.|....... .+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------~~------~~~~~t~~~~~~~---~~~ 68 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------VS------KTPGKTRSINFYL---VNS 68 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------CC------SSCCCCCCEEEEE---ETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------cc------CCCCCccCeEEEE---ECC
Confidence 35699999999999999999997532100 00 0123333332222 234
Q ss_pred EEEEEeCCC----------ccchHhHH---HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEE
Q psy13961 86 YVTIIDAPG----------HRDFIKNM---ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 86 ~~~liDtpG----------~~~~~~~~---~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivvi 152 (459)
.+.+||||| ++.|...+ .+....+|++++|+|++.+... ...+.+..+...++| +++|+
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~i~v~ 140 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQD-------SDLMMVEWMKSLNIP-FTIVL 140 (195)
T ss_dssp TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-------HHHHHHHHHHHTTCC-EEEEE
T ss_pred cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCH-------HHHHHHHHHHHcCCC-EEEEE
Confidence 688999999 44454433 3344556999999999765322 444555677778899 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+.+. .......+++..++...+ .++++++||++|+|+
T Consensus 141 nK~Dl~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 141 TKMDKVKM----SERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGI 181 (195)
T ss_dssp ECGGGSCG----GGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTH
T ss_pred EChhcCCh----HHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCH
Confidence 99999862 334555566666655433 357999999999999
No 90
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=1.9e-18 Score=156.98 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=97.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....++|+++|++|+|||||+++|+...-. .+....++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 53 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYT-------------------------------NDYISTIGVDFKIKTVELD 53 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCC-------------------------------TTCCCSSCCCEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCcccceeEEEEEEEC
Confidence 445689999999999999999999743110 0011122333333334444
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~ 158 (459)
+ ..+.||||||+++|...+...+..+|++|+|+|++.... +. ....++..+.. .++| +++|+||+|+.
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 126 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---FN---GVKMWLQEIDRYATSTVL-KLLVGNKCDLK 126 (206)
T ss_dssp TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 4 589999999999998888888999999999999986521 11 22233333333 3467 88999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. +...+ +...+....+ ++++++||++|.|+
T Consensus 127 ~~~--~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 127 DKR--VVEYD----VAKEFADANK-----MPFLETSALDSTNV 158 (206)
T ss_dssp TTC--CSCHH----HHHHHHHHTT-----CCEEECCTTTCTTH
T ss_pred ccc--ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 521 11111 2222333333 36899999999998
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=1.9e-18 Score=154.77 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=98.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+...-.. .. ....|.+.......+.....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------------------~~---~~t~~~~~~~~~~~~~~~~~ 71 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP--------------------------AF---VSTVGIDFKVKTVYRHDKRI 71 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------------------SC---CCCCCCEEEEEEEEETTEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------------------Cc---CCceeEEEEEEEEEECCeEE
Confidence 46899999999999999999997432100 00 00113333322223333456
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~~~ 162 (459)
.+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+++..+... ++| +++|+||+|+.+..
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~- 143 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE---SFA---AVQDWATQIKTYSWDNAQ-VILVGNKCDLEDER- 143 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC-
T ss_pred EEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECccccccc-
Confidence 8999999999999888888899999999999998652 121 333444444443 677 89999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. .+++..+.+.+++ +++++||++|.|+
T Consensus 144 -~~~----~~~~~~~~~~~~~-----~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 144 -VVP----AEDGRRLADDLGF-----EFFEASAKENINV 172 (189)
T ss_dssp -CSC----HHHHHHHHHHHTC-----EEEECBTTTTBSH
T ss_pred -CCC----HHHHHHHHHHcCC-----eEEEEECCCCCCH
Confidence 111 1223334444443 6999999999998
No 92
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5.2e-18 Score=152.32 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=97.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+.++|+++|++++|||||+++|+...-.. . .....|.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~~~~ 63 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------------------E---LAATIGVDFKVKTISVDGNK 63 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------------------T---CCCCCSEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------------------c---CCCccceEEEEEEEEECCeE
Confidence 356899999999999999999997431100 0 00111233333333333345
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|++.... +. ....++..+.. .++| +++|+||+|+.+.
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---FV---KLDNWLNELETYCTRNDIV-NMLVGNKIDKENR 136 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHTTCCSCSCCE-EEEEEECTTSSSC
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCcCCCc-EEEEEECCcCccc
Confidence 789999999999998888888999999999999986521 11 22333333333 2566 8889999999653
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... + +...+.+..+ ++++++||++|.|+
T Consensus 137 ~~~~---~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 137 EVDR---N----EGLKFARKHS-----MLFIEASAKTCDGV 165 (195)
T ss_dssp CSCH---H----HHHHHHHHTT-----CEEEECCTTTCTTH
T ss_pred ccCH---H----HHHHHHHHcC-----CEEEEecCCCCCCH
Confidence 2211 1 2223333333 46899999999998
No 93
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=1.1e-18 Score=165.93 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=100.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+.++|+++|++|+|||||+++|+.... ......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 468999999999999999999963210 0112246788887778888899
Q ss_pred EEEEEeCCCccchHhH------HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC-CceEEEEEEccC
Q psy13961 86 YVTIIDAPGHRDFIKN------MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG-VKQLIVGVNKMD 156 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~------~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~-ip~iivviNK~D 156 (459)
.+.||||||+.+|... ....+ ..+|++++|+|++.. + +....+..+...+ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~-------~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--M-------RNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--H-------HHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--h-------hhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 9999999999887542 22222 579999999999864 1 4455555666677 88 899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+....... ...+.+.+| ++++|+||++|.|+
T Consensus 121 l~~~~~~~~~-------~~~l~~~lg-----~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 121 LLKKKGAKID-------IKKMRKELG-----VPVIPTNAKKGEGV 153 (271)
T ss_dssp HHHHHTCCCC-------HHHHHHHHS-----SCEEECBGGGTBTH
T ss_pred cCcccccHHH-------HHHHHHHcC-----CcEEEEEeCCCCCH
Confidence 7531000011 122222334 46999999999998
No 94
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=1.6e-18 Score=151.99 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=89.7
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
.....++|+++|++|+|||||+++|+...-. . +....++.+.....+..
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------------------~----~~~~t~~~~~~~~~~~~ 50 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFN---------------------------D----KHITTLGASFLTKKLNI 50 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCC---------------------------S----SCCCCCSCEEEEEEEES
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCC---------------------------c----CCCCccceEEEEEEEEE
Confidence 3456789999999999999999999743110 0 00011122222223333
Q ss_pred --CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCC
Q psy13961 83 --SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDS 157 (459)
Q Consensus 83 --~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~ 157 (459)
....+.||||||+++|...+...+..+|++++|+|+++... +. ....++..+.. .++| +++|+||+|+
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 123 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---FQ---KVKNWVKELRKMLGNEIC-LCIVGNKIDL 123 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHGGGSE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECccc
Confidence 34578999999999998888888899999999999986521 11 22223333322 4677 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. +... ++...+.+..+ ++++++||++|+|+
T Consensus 124 ~~~~--~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 124 EKER--HVSI----QEAESYAESVG-----AKHYHTSAKQNKGI 156 (170)
T ss_dssp GGGC--CSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSH
T ss_pred cccc--ccCH----HHHHHHHHHcC-----CeEEEecCCCCCCH
Confidence 7521 1111 22333334333 46899999999998
No 95
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=2.1e-18 Score=151.17 Aligned_cols=143 Identities=25% Similarity=0.273 Sum_probs=92.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+++|+..... .. ...++|++.....+...+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~--------------------------~~-----~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY--------------------------IG-----NWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS--------------------------CC----------CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee--------------------------cc-----CCCCcceeeeEEEEEECCc
Confidence 4689999999999999999999632100 00 1124455554555666788
Q ss_pred EEEEEeCCCccchHh------HHHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDFIK------NMITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~~~------~~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.+|||||+.+|.. ....++ ..+|++++|+|++.. + +....+..+...++| +++|.||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~-------~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--E-------RNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--H-------HHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--h-------HhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 999999999988741 122233 379999999999752 1 233344455557889 8899999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
..... .. .+...+.+.++ ++++++||++|+|+
T Consensus 121 ~~~~~----~~---~~~~~~~~~~~-----~~~~~~SA~~~~~v 152 (165)
T 2wji_A 121 AKSLG----IE---IDVDKLEKILG-----VKVVPLSAAKKMGI 152 (165)
T ss_dssp HHHTT----CC---CCHHHHHHHHT-----SCEEECBGGGTBSH
T ss_pred ccccC----hh---hHHHHHHHHhC-----CCEEEEEcCCCCCH
Confidence 53100 00 01122222333 36899999999999
No 96
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.75 E-value=6.6e-18 Score=147.42 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=92.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+...- . .+..+ ..+.+.. ....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~------------------------~~~~~---t~~~~~~-~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEF--V------------------------EDYEP---TKADSYR-KKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--C------------------------SCCCT---TCCEEEE-EEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcc--C------------------------CCCCC---CcceEEE-EEEEECCEE
Confidence 4678999999999999999999974320 0 00000 0011111 111122233
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFA---ATADFREQILRVKEDENVP-FLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCc-EEEEEECcccccc
Confidence 58999999999999998888899999999999998642 111 22222222222 2678 8999999999652
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +...+ ++..+++..+ ++++++||++|+|+
T Consensus 125 ~--~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 154 (168)
T 1u8z_A 125 R--QVSVE----EAKNRADQWN-----VNYVETSAKTRANV 154 (168)
T ss_dssp C--CSCHH----HHHHHHHHHT-----CEEEECCTTTCTTH
T ss_pred C--ccCHH----HHHHHHHHcC-----CeEEEeCCCCCCCH
Confidence 1 11112 2333333333 36899999999998
No 97
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=1.5e-17 Score=144.67 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=93.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee--C
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET--S 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~ 83 (459)
+..+|+++|+.|+|||||+++|+...-.- ... ..+.+.....+.. .
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------------------~~~------~~~~~~~~~~~~~~~~ 49 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--------------------------ECD------PTIEDSYRKQVVIDGE 49 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--------------------------CCC------TTCCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--------------------------ccC------CccceEEEEEEEECCE
Confidence 46899999999999999999997431100 000 0000111112222 2
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~ 159 (459)
...+.+|||||+++|...+...+..+|++++|+|+++... +. ...+.+..+.. .++| +++++||+|+.+
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHQYREQIKRVKDSDDVP-MVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHTCSCCC-EEEEEECTTCSC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEchhhhh
Confidence 3568999999999998888888899999999999986421 11 22333333332 2688 889999999976
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...... ++..+.+..+ ++++++||++|.|+
T Consensus 123 ~~~~~~-------~~~~~~~~~~-----~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 123 RTVESR-------QAQDLARSYG-----IPYIETSAKTRQGV 152 (166)
T ss_dssp CCSCHH-------HHHHHHHHHT-----CCEEEECTTTCTTH
T ss_pred cccCHH-------HHHHHHHHcC-----CeEEEecCCCCCCH
Confidence 322222 2233333334 36899999999998
No 98
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=2.4e-18 Score=150.49 Aligned_cols=148 Identities=17% Similarity=0.186 Sum_probs=95.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
...++|+++|++|+|||||+++|+...-. . +....++.+.....+..+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------------~----~~~~t~~~~~~~~~~~~~~ 51 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFT---------------------------K----DYKKTIGVDFLERQIQVND 51 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCC---------------------------C----CSSCCCSSSEEEEEEEETT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCC---------------------------C----CCCCceEEEEEEEEEEECC
Confidence 35689999999999999999999742100 0 000111112222233333
Q ss_pred -CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCC
Q psy13961 84 -KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++++|+|+++.. .+. .....+..+.. .+.| +++|+||+|+.+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE---SFE---AISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 458999999999999888888889999999999998652 111 22233333322 3778 8899999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +... +++..+.+..+ ++++++||++|.|+
T Consensus 125 ~--~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 125 S--CIKN----EEAEGLAKRLK-----LRFYRTSVKEDLNV 154 (168)
T ss_dssp C--SSCH----HHHHHHHHHHT-----CEEEECBTTTTBSS
T ss_pred c--ccCH----HHHHHHHHHcC-----CeEEEEecCCCCCH
Confidence 1 1111 22333344444 37899999999998
No 99
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.75 E-value=3.1e-18 Score=153.82 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=96.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|+.|+|||||+++|+...-.. .....++.+.....+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 66 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------------------------VHDLTIGVEFGARMVNID 66 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------------------CCSSEEEEEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCcccceeEEEEEEEC
Confidence 3457899999999999999999997532110 000111222222233333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~ 158 (459)
+ ..+.||||||+++|...+...+..+|++|+|+|+++.. .+. .....+..+.. .++| +++|+||+|+.
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 3 58999999999999888888889999999999998652 121 23334444443 2677 88999999996
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. +... ++...+.+..+ ++++++||++|+|+
T Consensus 140 ~~~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 140 SRR--DVKR----EEGEAFAREHG-----LIFMETSAKTACNV 171 (191)
T ss_dssp GGC--CSCH----HHHHHHHHHHT-----CEEEEECTTTCTTH
T ss_pred Ccc--ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 411 1111 22233333333 36899999999999
No 100
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.75 E-value=4.4e-18 Score=154.65 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=95.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 81 (459)
.++.++|+++|++|+|||||+++|+...- . .. ....+.+.....+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~------------------------~~------~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAF--P------------------------GE------YIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCC--C------------------------C-------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCC--C------------------------CC------cCCeecceeEEEEEEC
Confidence 45678999999999999999999974211 0 00 00111111112222
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDST 158 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~ 158 (459)
.....+.||||||+++|...+...+..+|++++|+|+++... +. ... ..+..+... ++| +++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 234566799999999998888888999999999999987521 11 121 233344443 788 89999999997
Q ss_pred CCCCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. ...+.. .++...+.+.+++ .+++++||++|+|+
T Consensus 148 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 148 DDK---DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGL 192 (204)
T ss_dssp TCH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTH
T ss_pred cch---hhhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCH
Confidence 631 111111 1122333344333 36999999999999
No 101
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=1.1e-18 Score=152.14 Aligned_cols=146 Identities=16% Similarity=0.088 Sum_probs=93.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
+..+|+++|++|+|||||+++|+...-. .... ..+.+.....+...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------------------~~~~------~~~~~~~~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI--------------------------EKYD------PTIEDFYRKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC--------------------------SCCC------TTCCEEEEEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc--------------------------ccCC------CCcceeEEEEEEECCE
Confidence 5789999999999999999999743210 0000 00001111222333
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~ 159 (459)
...+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+. ..++| +++|+||+|+.+
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---FQ---DIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 3568999999999999888888999999999999986521 10 1222222222 23678 899999999864
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +... ++...+.+..++ +++++||++|.|+
T Consensus 123 ~~--~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~gi 153 (167)
T 1kao_A 123 ER--EVSS----SEGRALAEEWGC-----PFMETSAKSKTMV 153 (167)
T ss_dssp GC--CSCH----HHHHHHHHHHTS-----CEEEECTTCHHHH
T ss_pred cc--cCCH----HHHHHHHHHhCC-----CEEEecCCCCcCH
Confidence 21 1111 122233333343 6899999999998
No 102
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=151.57 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+...-.. .. ....|.+.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------------~~---~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP--------------------------AF---VSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS--------------------------CC---CCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------------------Cc---CCccceeEEEEEEEECCeEE
Confidence 45899999999999999999997421000 00 00113333222223333356
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.||||||+++|...+...+..+|++|+|+|++... .+. ....++..+.. .+.| +++|+||+|+.+..
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~- 129 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE---SFN---AVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER- 129 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC-
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECcccCccc-
Confidence 8999999999999998888999999999999998652 111 22333333433 3677 89999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... +++..+.+.++ ++++++||++|.|+
T Consensus 130 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 130 -VVSS----ERGRQLADHLG-----FEFFEASAKDNINV 158 (203)
T ss_dssp -CSCH----HHHHHHHHHHT-----CEEEECBTTTTBSS
T ss_pred -ccCH----HHHHHHHHHCC-----CeEEEEECCCCCCH
Confidence 1111 22233334444 36899999999998
No 103
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.75 E-value=1.3e-17 Score=148.77 Aligned_cols=146 Identities=15% Similarity=0.114 Sum_probs=92.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+...-. ... .+.+.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------------------~~~------~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFV--------------------------DEY------DPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCC--------------------------CCC------CTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCC--------------------------CCC------CCCchheEEEEEEECC
Confidence 45789999999999999999999743210 000 0111111122233333
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDST 158 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~ 158 (459)
..+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 457889999999999888888999999999999986521 11 22222222222 3678 89999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.....+. +..+.+..+ ++++++||++|.|+
T Consensus 123 ~~~~~~~~-------~~~~~~~~~-----~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 123 SRTVDTKQ-------AQDLARSYG-----IPFIETSAKTRQGV 153 (189)
T ss_dssp SCSSCHHH-------HHHHHHHHT-----CCEEECCTTTCTTH
T ss_pred ccccCHHH-------HHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 64322222 222333333 36899999999998
No 104
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.75 E-value=5.5e-18 Score=151.81 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=94.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...-. . .....++.+.....+..+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------------~----~~~~t~~~~~~~~~~~~~ 65 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFP---------------------------D----RTEATIGVDFRERAVDID 65 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC---------------------------S----SCCCCCSCCEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCC---------------------------C----CCCCCcceEEEEEEEEEC
Confidence 345789999999999999999999742110 0 001112222223334444
Q ss_pred C--EEEEEEeCCCccchH-hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccC
Q psy13961 84 K--FYVTIIDAPGHRDFI-KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMD 156 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~-~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D 156 (459)
+ ..+.||||||+++|. ..+...++.+|++|+|+|+++.. .+. .....+..+. ..++| +++|+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 138 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMA---SFH---SLPAWIEECKQHLLANDIP-RILVGNKCD 138 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHHHCCCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 3 689999999999998 66777788999999999998642 111 2222333222 23677 899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCC---Ccc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHG---DNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g---~~i 201 (459)
+.+.. +... ++...+.+..+ ++++++||++| +|+
T Consensus 139 l~~~~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 139 LRSAI--QVPT----DLAQKFADTHS-----MPLFETSAKNPNDNDHV 175 (189)
T ss_dssp CGGGC--CSCH----HHHHHHHHHTT-----CCEEECCSSSGGGGSCH
T ss_pred ccccc--eeCH----HHHHHHHHHcC-----CEEEEEeCCcCCcccCH
Confidence 96421 1111 12223333333 36899999999 777
No 105
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=148.23 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=87.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+..... . .....|.+.......+....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~ 51 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQER---------------------------D---LHEQLGEDVYERTLTVDGED 51 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCc---------------------------c---ccCccccceeEEEEEECCEE
Confidence 45789999999999999999999732100 0 00012333322222222233
Q ss_pred EEEEEEeCCCccch--HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc----CCceEEEEEEccCCC
Q psy13961 85 FYVTIIDAPGHRDF--IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL----GVKQLIVGVNKMDST 158 (459)
Q Consensus 85 ~~~~liDtpG~~~~--~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~----~ip~iivviNK~D~~ 158 (459)
..+.+|||||++++ .......++.+|++++|+|+++.. .+. ...+.+..+... ++| +++|+||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG---SFE---SASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH---HHH---HHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 57899999999884 333445567899999999998642 121 223333334433 788 89999999997
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. +...+ +...+....+ ++++++||++|+|+
T Consensus 125 ~~~--~v~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 125 RCR--EVSVE----EGRACAVVFD-----CKFIETSATLQHNV 156 (175)
T ss_dssp TTC--CSCHH----HHHHHHHHHT-----SEEEECBTTTTBSH
T ss_pred ccc--ccCHH----HHHHHHHHcC-----CeEEEEecCCCCCH
Confidence 521 11111 2222333333 47999999999999
No 106
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.75 E-value=4.3e-18 Score=151.56 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=95.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+..++|+++|++|+|||||+++|+... .. ....+ ..+.... ....+...
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~--~~------------------------~~~~~---t~~~~~~-~~~~~~~~ 51 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNA--FP------------------------GEYIP---TVFDNYS-ANVMVDGK 51 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSS--CC------------------------SSCCC---CSCCEEE-EEEEETTE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCC--CC------------------------CCcCC---cccceeE-EEEEECCE
Confidence 3567899999999999999999997421 10 00000 0011110 01112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++++|+|+++... +. ... ..+..+... ++| +++|+||+|+.+.
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 124 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 124 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTSC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHHhCCCCC-EEEEeEccccccc
Confidence 3567799999999998887788899999999999986521 11 122 233334333 788 8899999999753
Q ss_pred CCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+.+ .++...+.+..++ .+++++||++|+|+
T Consensus 125 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 125 K---DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGL 167 (186)
T ss_dssp H---HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTH
T ss_pred c---hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCH
Confidence 1 111111 1122233333332 37999999999999
No 107
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=155.35 Aligned_cols=148 Identities=20% Similarity=0.206 Sum_probs=94.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|+.|+|||||+++|+...-. .+....++.+.....+..++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~ 71 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-------------------------------QDSNHTIGVEFGSRVVNVGG 71 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-------------------------------ccCCCcccceeEEEEEEECC
Confidence 45689999999999999999999732100 00111222222233344444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 144 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE---TYN---SLAAWLTDARTLASPNIV-VILCGNKKDLDP 144 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHTCTTCE-EEEEEECGGGGG
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEECCCccc
Confidence 68999999999999888888889999999999998652 111 22333333332 3677 899999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +.... +...+.+..+ ++++++||++|.|+
T Consensus 145 ~~--~v~~~----~~~~~~~~~~-----~~~~~~SA~~g~gi 175 (200)
T 2o52_A 145 ER--EVTFL----EASRFAQENE-----LMFLETSALTGENV 175 (200)
T ss_dssp GC--CSCHH----HHHHHHHHTT-----CEEEEECTTTCTTH
T ss_pred cc--ccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 11 11112 2223333333 47999999999999
No 108
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=153.40 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...-... . ....|.+.......+....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~------------------------~-----~~t~~~~~~~~~~~~~~~~ 73 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD------------------------S-----RTTIGVEFSTRTVMLGTAA 73 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS------------------------C-----CCCSSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC------------------------C-----CCccceeEEEEEEEECCEE
Confidence 3468999999999999999999975321100 0 0011222222222333345
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...+..+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+.+..
T Consensus 74 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~ 146 (193)
T 2oil_A 74 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---YA---VVERWLKELYDHAEATIV-VMLVGNKSDLSQAR 146 (193)
T ss_dssp EEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHTTSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECCCccccc
Confidence 789999999999998888888999999999999986521 11 22334444433 2567 88999999997521
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+..+ ++++++||++|+|+
T Consensus 147 --~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 147 --EVPT----EEARMFAENNG-----LLFLETSALDSTNV 175 (193)
T ss_dssp --CSCH----HHHHHHHHHTT-----CEEEEECTTTCTTH
T ss_pred --ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 1111 22233333333 47899999999998
No 109
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.74 E-value=1e-17 Score=149.14 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=94.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|+.|+|||||+++|+... .. ... ...+.......+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~------------------------~~~------~~t~~~~~~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FV------------------------EDY------EPTKADSYRKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CC------------------------CSC------CTTCCEEEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CC------------------------CcC------CCccceEEEEEEEEC
Confidence 4567899999999999999999997432 00 000 000111111222333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 578999999999999988888999999999999986421 11 22222222222 2678 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. .+... +++..+++..+ ++++++||++|+|+
T Consensus 136 ~~~--~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 136 EDK--RQVSV----EEAKNRAEQWN-----VNYVETSAKTRANV 168 (187)
T ss_dssp GGG--CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTH
T ss_pred ccc--CccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCH
Confidence 652 11111 22333344433 47899999999998
No 110
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-17 Score=146.19 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=102.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|+|||||+++|+...-.. ...+ ..+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------------------~~~~---t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE--------------------------SYIP---TVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS--------------------------SCCC---CSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--------------------------CCCC---CccccEE-EEEEECCEEE
Confidence 45899999999999999999997421000 0000 0011111 1111222345
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEccCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~D~~~~ 160 (459)
.+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+.+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---LE---ELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 78999999999999888888999999999999986521 11 23333333333 3678 8999999998642
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCCC
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~~ 238 (459)
.. ... .+...+....+ ++++++||++|.|+ ++|++.|.+....
T Consensus 125 ~~--v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi------------------------~~l~~~l~~~~~~ 167 (172)
T 2erx_A 125 RE--VQS----SEAEALARTWK-----CAFMETSAKLNHNV------------------------KELFQELLNLEKR 167 (172)
T ss_dssp CC--SCH----HHHHHHHHHHT-----CEEEECBTTTTBSH------------------------HHHHHHHHHTCCS
T ss_pred cc--cCH----HHHHHHHHHhC-----CeEEEecCCCCcCH------------------------HHHHHHHHHHHhh
Confidence 11 111 11222233333 47899999999999 7888888776543
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.2e-18 Score=154.71 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|+.|+|||||+++|+...-... . ....|.+.......+.....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------~-------~~t~~~~~~~~~~~~~~~~~ 72 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPA----------------------F-------VSTVGIDFKVKTVYRHEKRV 72 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCC----------------------E-------EEEETTTEEEEEEEETTTTE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcc----------------------c-------CCCeeeEEEEEEEEECCEEE
Confidence 467999999999999999999975321000 0 00113333333344455678
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCCCC
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~~~ 162 (459)
.+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+..
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~- 144 (191)
T 3dz8_A 73 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFN---AVQDWATQIKTYSWDNAQ-VILVGNKCDMEEER- 144 (191)
T ss_dssp EEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHH---HHH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGGGC-
T ss_pred EEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCcccc-
Confidence 8999999999999999999999999999999998642 121 33344444444 3677 88999999996421
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+... ++...+.+..+ ++++++||++|.|+
T Consensus 145 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 145 -VVPT----EKGQLLAEQLG-----FDFFEASAKENISV 173 (191)
T ss_dssp -CSCH----HHHHHHHHHHT-----CEEEECBTTTTBSH
T ss_pred -ccCH----HHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 1111 22233333334 36899999999998
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=2.7e-18 Score=157.43 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=92.5
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEE
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 80 (459)
|..+...++|+++|++|+|||||+++|+...- . .. . ....+.+... ..+
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~---------------------~~-~-----~~t~~~~~~~--~~~ 53 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRF--E---------------------KN-Y-----NATVGAVNHP--VTF 53 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCST--T---------------------CE-E-----ETTTTEEEEE--EEE
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCC--C---------------------CC-C-----CCccceeeEE--EEE
Confidence 34456678999999999999999999963210 0 00 0 0011111111 111
Q ss_pred ee-C--CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEc
Q psy13961 81 ET-S--KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNK 154 (459)
Q Consensus 81 ~~-~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK 154 (459)
.. . ...+.||||||+++|.......+..+|++|+|+|++++.. +. ...+++..+.. .++| +++|+||
T Consensus 54 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK 126 (218)
T 4djt_A 54 LDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT---CQ---NLARWVKEFQAVVGNEAP-IVVCANK 126 (218)
T ss_dssp EBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCSSSC-EEEEEEC
T ss_pred EeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEEC
Confidence 11 1 1679999999999998877788889999999999987632 11 22223233332 3678 8899999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+.. +. ..+....+.+.. .++++++||++|.|+
T Consensus 127 ~Dl~~~~--~~----~~~~~~~~~~~~-----~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 127 IDIKNRQ--KI----SKKLVMEVLKGK-----NYEYFEISAKTAHNF 162 (218)
T ss_dssp TTCC------C----CHHHHHHHTTTC-----CCEEEEEBTTTTBTT
T ss_pred CCCcccc--cc----CHHHHHHHHHHc-----CCcEEEEecCCCCCH
Confidence 9997520 00 112223333332 357999999999998
No 113
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=167.22 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=97.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+... + ... ..|+...+..++..+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~----------------------~-----~~~-------~pT~~~~~~~~~~~~ 208 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGE----------------------I-----VTT-------IPTIGFNVETVEYKN 208 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSC----------------------C-----EEE-------EEETTEEEEEEEETT
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCC----------------------C-----CCc-------ccccceEEEEEecCc
Confidence 345799999999999999999995311 0 000 124555566677888
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHHH---cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~---~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+..++..+|++|+|+|+++.. ++. ...+.+. ++.. .++| +++|+||+|+.+.
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~ 281 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RVN---EAREELMRMLAEDELRDAV-LLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS---SHH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH---HHH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCcc
Confidence 99999999999999988888999999999999997641 121 2222332 2222 2677 8999999999863
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|.|+
T Consensus 282 ----~~~~~i~~~~~----~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 282 ----MNAAEITDKLG----LHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp ----CCHHHHHHHHT----CTTCCSSCEEEEECBTTTTBTH
T ss_pred ----cCHHHHHHHhc----hhhhhcCCCEEEEEECCCCcCH
Confidence 12233333332 1122234578999999999999
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.74 E-value=7.8e-18 Score=154.28 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=94.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
...++|+++|++++|||||+++|+...- . .+....++.+.....+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--N-----------------------------PKFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--C-----------------------------CEEEEEEEEEEEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--C-----------------------------cCCCCceeEEEEEEEEEECC
Confidence 3468999999999999999999973210 0 0000111222222222222
Q ss_pred -----------CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceE
Q psy13961 84 -----------KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQL 148 (459)
Q Consensus 84 -----------~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~i 148 (459)
...+.||||||+++|...+...+..+|++|+|+|++.... +. ....++..+.. .++| +
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~---~~~~~l~~i~~~~~~~~~p-i 144 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQS---FL---NVRNWMSQLQANAYCENPD-I 144 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHH---HH---HHHHHHHTCCCCCTTTCCE-E
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCcCCCC-E
Confidence 5689999999999999988899999999999999986521 10 11222222211 3566 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++|+||+|+.+.. +.. .+++..+.+..+ ++++++||++|+|+
T Consensus 145 ilV~NK~Dl~~~~--~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi 186 (217)
T 2f7s_A 145 VLIGNKADLPDQR--EVN----ERQARELADKYG-----IPYFETSAATGQNV 186 (217)
T ss_dssp EEEEECTTCGGGC--CSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTH
T ss_pred EEEEECCcccccc--ccC----HHHHHHHHHHCC-----CcEEEEECCCCCCH
Confidence 9999999997521 111 122333344444 36899999999998
No 115
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.74 E-value=1e-17 Score=153.42 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=95.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 81 (459)
+++..+|+++|..++|||||+.+|+... .. .+....+..+.....+.
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~--f~-----------------------------~~~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDS--FD-----------------------------NTYQATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSC--CC---------------------------------------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCC--CC-----------------------------CCcCCccceEEEEEEEEec
Confidence 4566899999999999999999997421 00 01111111122222222
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH---HcCCceEEEEEEccCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF---TLGVKQLIVGVNKMDST 158 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~---~~~ip~iivviNK~D~~ 158 (459)
.....+.||||+|+++|...+..+++.+|++++|+|.+... .|. ....++..++ ..++| +++|.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~---Sf~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN---SFQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTTSSE-EEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhH---HHH---HHHHHHHHHHHhcCCCCe-EEEEeeccchH
Confidence 33467889999999999999889999999999999998652 232 2333343333 24577 89999999996
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+. .+... ++...+.+.++ ++|+++||++|+|+
T Consensus 132 ~~--r~V~~----~e~~~~a~~~~-----~~~~e~SAktg~nV 163 (216)
T 4dkx_A 132 DK--RQVSI----EEGERKAKELN-----VMFIETSAKAGYNV 163 (216)
T ss_dssp GG--CCSCH----HHHHHHHHHHT-----CEEEEEBTTTTBSH
T ss_pred hc--CcccH----HHHhhHHHHhC-----CeeEEEeCCCCcCH
Confidence 51 11111 23333444444 36899999999999
No 116
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=2.9e-17 Score=147.02 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|+.|+|||||+++|+...- . ... .+.+.+.....+...
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~-------------------------~~~-----~~t~~~~~~~~~~~~ 65 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHF--V-------------------------DEY-----DPTIEDSYRKQVVID 65 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSC--C-------------------------SCC-----CTTCCEEEEEEEEET
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCC--c-------------------------ccc-----CCccceEEEEEEEEC
Confidence 45678999999999999999999974311 0 000 000111111223333
Q ss_pred --CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 84 --KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
...+.||||||+++|...+...+..+|++++|+|+++... +. .....+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 138 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---FA---DINLYREQIKRVKDSDDVP-MVLVGNKCDL 138 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence 3569999999999998888888999999999999986521 11 22223333332 3678 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+..... +++.++.+..++ +++++||++|+|+
T Consensus 139 ~~~~~~~-------~~~~~~~~~~~~-----~~~~~Sa~~~~gi 170 (190)
T 3con_A 139 PTRTVDT-------KQAHELAKSYGI-----PFIETSAKTRQGV 170 (190)
T ss_dssp SCCCSCH-------HHHHHHHHHHTC-----CEEECCTTTCTTH
T ss_pred CcccCCH-------HHHHHHHHHcCC-----eEEEEeCCCCCCH
Confidence 7532222 223333344443 6899999999998
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=4.9e-18 Score=151.78 Aligned_cols=146 Identities=25% Similarity=0.283 Sum_probs=98.8
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 82 (459)
..++..+|+++|+.|+|||||+++|+... +. .+...++|.+.....+..
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~----------------------~~---------~~~~~~~t~~~~~~~~~~ 51 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGEN----------------------VY---------IGNWPGVTVEKKEGEFEY 51 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTC----------------------EE---------EEECTTSCCEEEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCC----------------------cc---------ccCCCCeeccceEEEEEe
Confidence 35677899999999999999999996321 00 011135666666666777
Q ss_pred CCEEEEEEeCCCccchHh------HHHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 83 SKFYVTIIDAPGHRDFIK------NMITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~------~~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.+..+.+|||||+.+|.. .....+ ..+|++++|+|++. ++ .....+..+...+.| +++|+||
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~-------~~~~~~~~~~~~~~p-iilv~nK 121 (188)
T 2wjg_A 52 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LE-------RNLYLTLQLMEMGAN-LLLALNK 121 (188)
T ss_dssp TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HH-------HHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HH-------HHHHHHHHHHhcCCC-EEEEEEh
Confidence 889999999999988731 122233 34899999999864 22 344555566667888 8888999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+..... +......+.+.++ ++++++||++|+|+
T Consensus 122 ~Dl~~~~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 122 MDLAKSLG-------IEIDVDKLEKILG-----VKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHHHHTT-------CCCCHHHHHHHHT-----SCEEECBGGGTBSH
T ss_pred hhcccccc-------chHHHHHHHHHhC-----CCeEEEEecCCCCH
Confidence 99853100 0011222223333 36899999999998
No 118
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.73 E-value=2.3e-18 Score=158.37 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=100.6
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....++|+++|++|+|||||+++|+...-. . ......|.+.......+...
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------~------~~~~t~~~~~~~~~~~~~~~ 62 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------K------KYVATLGVEVHPLVFHTNRG 62 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------C------EEETTTTEEEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------C------CCCCccceeEEEEEEEECCE
Confidence 456789999999999999999997632100 0 00112345555544445555
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~~~ 161 (459)
...+.||||||+++|...+...+..+|++|+|+|+++... +. ....++..+.. .++| +++|+||+|+.+..
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKDRK 135 (221)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTCC-EEEEEECTTSSSCS
T ss_pred EEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCcccccc
Confidence 6789999999999998888888899999999999987521 21 22233333332 2778 89999999997632
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... +...+.+..+ ++++++||++|.|+
T Consensus 136 ~~~--------~~~~~~~~~~-----~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 136 VKA--------KSIVFHRKKN-----LQYYDISAKSNYNF 162 (221)
T ss_dssp SCG--------GGCCHHHHHT-----CEEEECBGGGTBTT
T ss_pred ccH--------HHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 211 2222233333 47899999999998
No 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=149.08 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+... .. .+. .+.+.+.....+..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~------------------------~~~------~~t~~~~~~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDE--FV------------------------EDY------EPTKADSYRKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CC------------------------TTC------CTTCCEEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCC--CC------------------------CCC------CCccceEEEEEEEEC
Confidence 3457899999999999999999997432 00 000 001111111223333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|...+...+..+|++++|+|++... .+. ....++..+.. .++| +++|+||+|+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME---SFA---ATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 3 58999999999999998888899999999999998642 111 22223222222 2678 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. .+...+ ++..+.+..+ ++++++||++|+|+
T Consensus 132 ~~~--~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 132 EDK--RQVSVE----EAKNRAEQWN-----VNYVETSAKTRANV 164 (206)
T ss_dssp GGG--CCSCHH----HHHHHHHHHT-----CEEEEECTTTCTTH
T ss_pred ccc--ccccHH----HHHHHHHHhC-----CeEEEEeCCCCCCH
Confidence 752 111122 2333334334 36899999999999
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=5.1e-18 Score=172.21 Aligned_cols=153 Identities=24% Similarity=0.340 Sum_probs=101.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+...-.+ .+...|+|.+..+..+++.+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 53 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYDF 53 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCceE
Confidence 689999999999999999996432111 11234788888777888888899
Q ss_pred EEEeCCCcc--------chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 88 TIIDAPGHR--------DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 88 ~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.||||||+. .|...+..++..||++|+|+|+..+... ...+...+++..++| +++|+||+|+.+
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~-------~d~~~~~~l~~~~~p-vilv~NK~D~~~ 125 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA-------ADEEVAKILYRTKKP-VVLAVNKLDNTE 125 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCH-------HHHHHHHHHTTCCSC-EEEEEECCCC--
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEECccCcc
Confidence 999999986 5666677788899999999999877432 445555666677888 899999999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCChhhHHHhccccCC
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll~~l~~~~~ 237 (459)
. . .++.++. .+|+. +++++||.+|.|+ .+|++.+.+.++
T Consensus 126 ~-----~-----~~~~~~~-~lg~~----~~~~iSA~~g~gv------------------------~~L~~~i~~~l~ 164 (436)
T 2hjg_A 126 M-----R-----ANIYDFY-SLGFG----EPYPISGTHGLGL------------------------GDLLDAVAEHFK 164 (436)
T ss_dssp -------------CCCSSG-GGSSC----CCEECBTTTTBTH------------------------HHHHHHHHHTGG
T ss_pred c-----h-----hhHHHHH-HcCCC----CeEEEeCcCCCCh------------------------HHHHHHHHHhcC
Confidence 2 0 1122222 33442 5799999999998 778888776654
No 121
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=3.7e-17 Score=145.33 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=95.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|++|+|||||+++|+...-. .+.. ..+.... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--------------------------~~~~-----~t~~~~~-~~~~~~~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV--------------------------DDYD-----PTIEDSY-LKHTEID 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------SCCC-----TTCCEEE-EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC--------------------------CCCC-----CCcccee-EEEEEeC
Confidence 446789999999999999999999743110 0000 0111111 2223333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH----HHcCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA----FTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~----~~~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|...+...+..+|++++|+|+++.. .+. ...+.+..+ ...++| +++|+||+|+
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFE---HVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 3 45677999999999888888899999999999998752 121 222222222 225678 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCC-CCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGW-HGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~-~g~~i 201 (459)
.+.. +... ++...+.+.++ ++++++||+ +|.|+
T Consensus 136 ~~~~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 136 MHLR--KVTR----DQGKEMATKYN-----IPYIETSAKDPPLNV 169 (183)
T ss_dssp STTC--CSCH----HHHHHHHHHHT-----CCEEEEBCSSSCBSH
T ss_pred hhcc--CcCH----HHHHHHHHHhC-----CeEEEeccCCCCCCH
Confidence 7521 1111 22333344444 469999999 99998
No 122
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=1.6e-17 Score=149.44 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEEee
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKFET 82 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~~~ 82 (459)
.++.++|+++|++|+|||||+++|+...- . ... ..|+...+ ..+..
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~------------------------~~~-------~~t~~~~~~~~~~~ 66 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEI--P------------------------TAY-------VPTVFENFSHVMKY 66 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCC--C------------------------SSC-------CCCSEEEEEEEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCC--C------------------------Ccc-------CCeeeeeeEEEEEE
Confidence 45678999999999999999999975321 0 000 01111111 12223
Q ss_pred C--CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHHc--CCceEEEEEEccCC
Q psy13961 83 S--KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFTL--GVKQLIVGVNKMDS 157 (459)
Q Consensus 83 ~--~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~~--~ip~iivviNK~D~ 157 (459)
. ...+.||||||+++|...+...+..+|++|+|+|+++.. .+. .. ..++..+... ++| +++|+||+|+
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 139 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT---SFD---NISTKWEPEIKHYIDTAK-TVLVGLKVDL 139 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 3 356799999999999988888899999999999998652 111 11 2223333332 577 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+....+.. .+++..+.+.+++. .++++||++|+|+
T Consensus 140 ~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~Sa~~~~gi 175 (194)
T 3reg_A 140 RKDGSDDVT----KQEGDDLCQKLGCV----AYIEASSVAKIGL 175 (194)
T ss_dssp CCTTTTCCC----HHHHHHHHHHHTCS----CEEECBTTTTBSH
T ss_pred ccCCCCccc----HHHHHHHHHhcCCC----EEEEeecCCCCCH
Confidence 752111111 22333444444542 3899999999999
No 123
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=7e-18 Score=149.80 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=92.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|++|+|||||+++|+...- . .+..+ ..+.+. ...+..+
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~--~------------------------~~~~~---t~~~~~---~~~~~~~ 50 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQF--V------------------------DSYDP---TIENTF---TKLITVN 50 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSC--C------------------------SCCCT---TCCEEE---EEEEEET
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCC--C------------------------CCCCC---CccccE---EEEEEEC
Confidence 34578999999999999999999974210 0 00000 112122 2223333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|...+...+..+|++++|+|+++.. .+. .....+..+ . ..++| +++|+||+|+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 123 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFE---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDL 123 (181)
T ss_dssp TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHC----CC-EEEEEECTTC
T ss_pred CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 67799999999999777777888999999999998642 111 112222222 2 23678 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. +... +++..+.+..+ ++++++||++|.|+
T Consensus 124 ~~~~--~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 124 HMER--VISY----EEGKALAESWN-----AAFLESSAKENQTA 156 (181)
T ss_dssp TTTC--CSCH----HHHHHHHHHTT-----CEEEECCTTSHHHH
T ss_pred hhcc--eecH----HHHHHHHHHhC-----CcEEEEecCCCCCH
Confidence 6421 1111 22333344444 36999999999998
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.5e-18 Score=154.90 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=93.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++++|||||+++|+...-.. +....++.+.....+..++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM-------------------------------DSKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCcccceeEEEEEEECC
Confidence 346899999999999999999997432110 0011122222233344444
Q ss_pred --EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCC
Q psy13961 85 --FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 --~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~ 159 (459)
..+.||||||+++|...+...++.+|++|+|+|++.... +. ...+++..+... ++| +++|+||+|+.+
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---YE---NCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---HH---HHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 689999999999998888888899999999999986521 11 223333334332 677 889999999964
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. +...+ +...+.+..+ ++++++||++|+|+
T Consensus 133 ~~--~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 133 LR--AVPTE----ESKTFAQENQ-----LLFTETSALNSENV 163 (223)
T ss_dssp GC--CSCHH----HHHHHHHHTT-----CEEEECCCC-CCCH
T ss_pred cc--ccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 11 11111 2223333333 47899999999999
No 125
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=2.2e-17 Score=144.16 Aligned_cols=146 Identities=15% Similarity=0.069 Sum_probs=78.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
.++|+++|++|+|||||+++|+..... ......|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~------------------------------~~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG------------------------------PEAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc------------------------------CCCCccccceE-EEEEECCEEEE
Confidence 478999999999999999999521100 00011122322 11123334467
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCCCC
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEPPY 162 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~~~ 162 (459)
+.++||||+++|...+...+..+|++++|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+..
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~- 122 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG---SFE---KASELRVQLRRARQTDDVP-IILVGNKSDLVRSR- 122 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHH---HHH---HHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC-
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEecccccccc-
Confidence 899999999999888888889999999999998652 121 22333333333 3678 88999999997521
Q ss_pred cHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 163 SEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 163 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+...+ +...+....+ ++++++||++|+|+
T Consensus 123 -~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 123 -EVSVD----EGRACAVVFD-----CKFIETSAALHHNV 151 (166)
T ss_dssp -CSCHH----HHHHHHHHTT-----CEEEECBGGGTBSH
T ss_pred -ccCHH----HHHHHHHHhC-----CcEEEeccCCCCCH
Confidence 11111 1222223333 47999999999998
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.72 E-value=1.1e-17 Score=151.62 Aligned_cols=151 Identities=12% Similarity=0.115 Sum_probs=95.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
...++|+++|++|+|||||+++|+...-.. .. ...++.+.. ..+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------------------~~-----~~t~~~~~~-~~~~~~~ 70 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE--------------------------VY-----VPTVFENYI-ADIEVDG 70 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCS--------------------------SC-----CCSSCCCCE-EEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCc--------------------------cc-----CCcccceEE-EEEEECC
Confidence 346899999999999999999997432100 00 001111110 112333
Q ss_pred -CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHHc--CCceEEEEEEccCCCC
Q psy13961 84 -KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFTL--GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~~--~ip~iivviNK~D~~~ 159 (459)
...+.||||||+++|...+...+..+|++++|+|++... .+. .. ...+..+... ++| +++|+||+|+.+
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGTT
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEecHHhhc
Confidence 358899999999999888888889999999999998641 111 12 2233344443 788 899999999986
Q ss_pred CCCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ...+.+ .++...+.+.+++ .+++++||++|.|+
T Consensus 144 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi 187 (201)
T 2gco_A 144 DE---HTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGV 187 (201)
T ss_dssp CH---HHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTH
T ss_pred Cc---cchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCH
Confidence 31 111111 1122233333332 36899999999999
No 127
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.72 E-value=1.1e-17 Score=147.65 Aligned_cols=141 Identities=22% Similarity=0.236 Sum_probs=91.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|++|+|||||+++|+...... +. ...+.|.+.....+..++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------------------~~------~~~~~t~~~~~~~~~~~~ 51 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAI------------------------VT------DIAGTTRDVLREHIHIDG 51 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSC------------------------CC------SSTTCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcce------------------------ee------CCCCceeceeeEEEEECC
Confidence 345799999999999999999997432110 00 012445444445566677
Q ss_pred EEEEEEeCCCccchH--------hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDFI--------KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~~--------~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviN 153 (459)
..+.+|||||++++. ..+...+..+|++++|+|++..... +..+.+..+.. .++| +++|+|
T Consensus 52 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~-------~~~~~~~~~~~~~~~~~p-~ilv~N 123 (172)
T 2gj8_A 52 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV-------DPAEIWPEFIARLPAKLP-ITVVRN 123 (172)
T ss_dssp EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC-------SHHHHCHHHHHHSCTTCC-EEEEEE
T ss_pred eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHhcccCCC-EEEEEE
Confidence 889999999987531 1123457889999999999876321 22333333333 2578 889999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+.+... .+.+. ...+++++||++|+|+
T Consensus 124 K~Dl~~~~~-------------~~~~~-----~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 124 KADITGETL-------------GMSEV-----NGHALIRLSARTGEGV 153 (172)
T ss_dssp CHHHHCCCC-------------EEEEE-----TTEEEEECCTTTCTTH
T ss_pred CccCCcchh-------------hhhhc-----cCCceEEEeCCCCCCH
Confidence 999864100 01111 1357899999999999
No 128
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=7e-18 Score=149.38 Aligned_cols=148 Identities=16% Similarity=0.056 Sum_probs=93.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|+.|+|||||+++|+...- . .+..+ ..+... ...+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~------------------------~~~~~---t~~~~~---~~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYF--V------------------------SDYDP---TIEDSY---TKICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSC--C------------------------SSCCT---TCCEEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcC--c------------------------cccCC---CcCceE---EEEEEEC
Confidence 34578999999999999999999975310 0 00000 011111 1223333
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-H---HcCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-F---TLGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~---~~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|...+...+..+|++++|+|+++.. .+. ....++..+ . ..++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ---SFN---EVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 57899999999999888888889999999999998642 111 222222222 2 24678 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. +...+ +...+....+ ++++++||++|.|+
T Consensus 127 ~~~~--~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 127 ESQR--QVPRS----EASAFGASHH-----VAYFEASAKLRLNV 159 (181)
T ss_dssp GGGC--CSCHH----HHHHHHHHTT-----CEEEECBTTTTBSH
T ss_pred cccc--ccCHH----HHHHHHHHcC-----CeEEEecCCCCCCH
Confidence 7521 11111 2222222222 47999999999998
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.72 E-value=7.1e-18 Score=153.07 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=71.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
+...+|+++|+.|+|||||+++|+....... . +....+..+.....+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------------~----~~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-------------------------K----DYAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc-------------------------C----CCCCccceEEEEEEEEECC
Confidence 3467999999999999999999974310110 0 000111112333334444
Q ss_pred ---CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEc
Q psy13961 84 ---KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNK 154 (459)
Q Consensus 84 ---~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK 154 (459)
...+.||||||+++|...+...+..+|++|+|+|+++... +. ....++..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---FE---SCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---HH---HHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999999888888999999999999986521 11 23334444433 3677 8999999
Q ss_pred cCCCC-CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCC-CCcc
Q psy13961 155 MDSTE-PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWH-GDNM 201 (459)
Q Consensus 155 ~D~~~-~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~-g~~i 201 (459)
+|+.+ ... .. .+++..+.+.++ ++++++||++ |.|+
T Consensus 142 ~Dl~~~~~~--v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi 179 (208)
T 2yc2_C 142 TDLPPQRHQ--VR----LDMAQDWATTNT-----LDFFDVSANPPGKDA 179 (208)
T ss_dssp C-------C--CC----HHHHHHHHHHTT-----CEEEECCC-------
T ss_pred cccchhhcc--CC----HHHHHHHHHHcC-----CEEEEeccCCCCcCH
Confidence 99975 100 11 123333444444 4799999999 9998
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=2.7e-17 Score=166.99 Aligned_cols=142 Identities=24% Similarity=0.292 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|.+|+|||||+++|+.....+ + +...|+|.+..+..+++.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------v------~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------V------EDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------e------cCCCCCccceeeEEEEECCeEE
Confidence 379999999999999999997432111 1 1234788888888889999999
Q ss_pred EEEeCCCccc---------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 88 TIIDAPGHRD---------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 88 ~liDtpG~~~---------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
.||||||++. +...+..++..||++|+|+|++.+... ...+...+++..++| +++|+||+|+.
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~-------~d~~i~~~l~~~~~p-~ilv~NK~D~~ 123 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITK-------EDESLADFLRKSTVD-TILVANKAENL 123 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCH-------HHHHHHHHHHHHTCC-EEEEEESCCSH
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------HHHHHHHHHHHcCCC-EEEEEeCCCCc
Confidence 9999999764 334456678899999999999876322 334445556667899 88899999985
Q ss_pred CCCCcHHHHHHHHHHH-HhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEV-SGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l-~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+ .. ..++ ..+. .+|+. +++++||++|.|+
T Consensus 124 ~-----~~----~~~~~~~~~-~lg~~----~~~~iSA~~g~gv 153 (439)
T 1mky_A 124 R-----EF----EREVKPELY-SLGFG----EPIPVSAEHNINL 153 (439)
T ss_dssp H-----HH----HHHTHHHHG-GGSSC----SCEECBTTTTBSH
T ss_pred c-----cc----HHHHHHHHH-hcCCC----CEEEEeccCCCCH
Confidence 3 11 1122 2222 34542 4789999999998
No 131
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=6.4e-17 Score=156.46 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=104.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEee-CC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-SK 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~ 84 (459)
...+|+++|.+|+|||||+++|+..... ......+.|++..+..+.. ++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~------------------------------~~~~~~~~Ti~~~~~~~~~~~~ 51 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA------------------------------FDTRRLGATIDVEHSHLRFLGN 51 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT------------------------------GGGGGCCCCCSEEEEEEEETTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC------------------------------ccccCcCCccceEEEEEEeCCc
Confidence 3579999999999999999999742111 1112356777777766664 57
Q ss_pred EEEEEEeCCCccchH-----hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHH---HHHHHH--cCCceEEEEEEc
Q psy13961 85 FYVTIIDAPGHRDFI-----KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH---ALLAFT--LGVKQLIVGVNK 154 (459)
Q Consensus 85 ~~~~liDtpG~~~~~-----~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~---~~~~~~--~~ip~iivviNK 154 (459)
..+.||||||+++|. ......++.+|++|+|+|+++... +. ..... +..+.. .++| +++|+||
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~---~l~~~~~~l~~l~~~~~~~p-iilv~NK 124 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LK---DIEIFAKALKQLRKYSPDAK-IFVLLHK 124 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HH---HHHHHHHHHHHHHHHCTTCE-EEEEEEC
T ss_pred eEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHHhCCCCe-EEEEEec
Confidence 899999999999984 344555678999999999987521 10 11111 222221 2788 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+.+..+..++...+++.++.+.+|+ ..++++++||++ .++
T Consensus 125 ~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~--~~~~~~~tSa~~-~~i 168 (307)
T 3r7w_A 125 MDLVQLDKREELFQIMMKNLSETSSEFGF--PNLIGFPTSIWD-ESL 168 (307)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHTTTC--CSCEEEECCTTS-SHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHcCC--CCeEEEEeeecC-ChH
Confidence 99986211111122444666777777665 246899999999 666
No 132
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=6.1e-17 Score=149.73 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=94.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|.+|+|||||+++|+... +. ... ..+.|.+.....+...+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~----------------------~~---~~~------~~~~t~~~~~~~~~~~~~ 76 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN----------------------VD---VQS------YSFTTKNLYVGHFDHKLN 76 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC----------------------EE---EEC------C-----CEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----------------------Cc---cCC------CCCcceeeeeeeeecCCC
Confidence 45899999999999999999996321 00 000 123455555555666778
Q ss_pred EEEEEeCCCc------cch---HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc--CCceEEEEEEc
Q psy13961 86 YVTIIDAPGH------RDF---IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL--GVKQLIVGVNK 154 (459)
Q Consensus 86 ~~~liDtpG~------~~~---~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~--~ip~iivviNK 154 (459)
.+.||||||+ +.. ...+......+|++|+|+|+++.. .+.. ....+.+..+... ++| +++|+||
T Consensus 77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~-~~~~~~~~~l~~~~~~~p-iilv~nK 151 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQC---GLTI-KEQINLFYSIKSVFSNKS-IVIGFNK 151 (228)
T ss_dssp EEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTT---SSCH-HHHHHHHHHHHTCC-CCC-EEEEEEC
T ss_pred eEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccccc---Ccch-HHHHHHHHHHHHhhcCCc-EEEEEeC
Confidence 9999999999 331 122233456789999999998652 1210 0122334444444 788 8999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 155 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+|+.+... ...+..+.+..+....+ ..++++++||++|+|+
T Consensus 152 ~Dl~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi 192 (228)
T 2qu8_A 152 IDKCNMDS---LSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGV 192 (228)
T ss_dssp GGGCC--C---CCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTH
T ss_pred cccCCchh---hHHHHHHHHHHHHHhcC---CCceEEEEecccCCCH
Confidence 99975211 11112223344443332 1257999999999998
No 133
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.7e-17 Score=149.66 Aligned_cols=151 Identities=12% Similarity=0.071 Sum_probs=93.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
+...+|+++|++|+|||||+++|+...-... . ....+.... ..+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------------------~---~~t~~~~~~---~~~~~~~ 70 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV--------------------------Y---VPTVFENYV---ADIEVDG 70 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------------CCEEE---EEEEETT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc--------------------------C---CCcccceEE---EEEEECC
Confidence 4568999999999999999999975321000 0 000011111 112333
Q ss_pred -CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHHc--CCceEEEEEEccCCCC
Q psy13961 84 -KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFTL--GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~~--~ip~iivviNK~D~~~ 159 (459)
...+.||||||+++|...+...+..+|++|+|+|++... .+. .. ...+..+... ++| +++|+||+|+.+
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 143 (207)
T 2fv8_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD---SLE---NIPEKWVPEVKHFCPNVP-IILVANKKDLRS 143 (207)
T ss_dssp EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEchhhhc
Confidence 357899999999999888888889999999999998642 111 12 2233344433 788 899999999975
Q ss_pred CCCcHHHHHHHH---------HHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIK---------KEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ...+.+. ++...+...+++ .+++++||++|+|+
T Consensus 144 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 144 DE---HVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGV 187 (207)
T ss_dssp CH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTH
T ss_pred cc---cchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCH
Confidence 31 1111110 111222222222 37899999999999
No 134
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=3.5e-17 Score=143.36 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=84.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..+|+++|++|+|||||+++|+....... .....+.+.....+..+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-------------------------------HEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc-------------------------------ccCCCcCCeeeEEEEECCeE
Confidence 46899999999999999999963211100 00011122222223333 4
Q ss_pred EEEEEEeCCCccchHh-HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc----CCceEEEEEEccCCCC
Q psy13961 85 FYVTIIDAPGHRDFIK-NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL----GVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~----~ip~iivviNK~D~~~ 159 (459)
..+.+|||||+++|.. .....++.+|++++|+|+++.. .+. ...+.+..+... ++| +++|+||+|+.+
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR---SFS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChH---HHH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 6788999999999876 3444567899999999998642 221 233333333332 678 889999999974
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. .+... ++...+.+..+ ++++++||++|.|+
T Consensus 124 ~--~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 124 S--REVSL----EEGRHLAGTLS-----CKHIETSAALHHNT 154 (169)
T ss_dssp G--CCSCH----HHHHHHHHHTT-----CEEEECBTTTTBSH
T ss_pred c--ccCCH----HHHHHHHHHcC-----CcEEEecCccCCCH
Confidence 1 11111 22233333333 47899999999998
No 135
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=4e-17 Score=146.71 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=95.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS-- 83 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-- 83 (459)
...+|+++|+.|+|||||+++|+... .. ....+ ..+... ...+..+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~------------------------~~~~~---t~~~~~---~~~~~~~~~ 64 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FP------------------------EEYVP---TVFDHY---AVSVTVGGK 64 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CC------------------------CSCCC---SSCCCE---EEEEESSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CC------------------------CCCCC---ccccee---EEEEEECCE
Confidence 46799999999999999999997531 00 00000 001111 1123333
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|+++.. .+. ... .++..+... ++| +++|+||+|+.+.
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 137 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQ---NVKEEWVPELKEYAPNVP-FLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHSTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccc
Confidence 368899999999999888888889999999999998652 111 222 233444443 788 8999999999763
Q ss_pred CCcHHHH------HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARF------EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~------~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
......+ .-..++...+.+.+++ .+++++||++|+|+
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi 180 (194)
T 2atx_A 138 PKTLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGL 180 (194)
T ss_dssp HHHHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTH
T ss_pred ccchhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCH
Confidence 1000000 0001233334444443 36899999999999
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=8.6e-17 Score=147.22 Aligned_cols=150 Identities=14% Similarity=0.109 Sum_probs=80.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
++.++|+++|+.|+|||||+++|+... .. .+ . ...+.+.....+..+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~~------------------------~~-----~-~~t~~~~~~~~~~~~~ 79 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGA--FP------------------------ES-----Y-TPTVFERYMVNLQVKG 79 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEETT
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCC--CC------------------------CC-----C-CCccceeEEEEEEECC
Confidence 456899999999999999999997321 00 00 0 000001111122333
Q ss_pred -CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCCC
Q psy13961 84 -KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~~ 159 (459)
...+.||||||+++|...+...+..+|++|+|+|+++.. .+. ... ..+..+.. .++| +++|+||+|+.+
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 152 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN---SFD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGGS
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhhc
Confidence 347899999999999888888889999999999998652 111 111 22233332 2678 899999999976
Q ss_pred CCCcHHHHHHHH----------HHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIK----------KEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~----------~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ....+.. ++...+.+.+++ .+++++||++|.|+
T Consensus 153 ~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 153 D----KSLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNV 196 (214)
T ss_dssp C----HHHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSH
T ss_pred c----chhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCH
Confidence 3 1111111 222334444432 37899999999998
No 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.71 E-value=1.5e-17 Score=147.55 Aligned_cols=154 Identities=15% Similarity=0.097 Sum_probs=89.9
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+...+|+++|++|+|||||+++|+... .... ..+. .+.... ....+...
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~------------------------~~~t---~~~~~~-~~~~~~~~ 54 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD------------------------YVPT---VFDNFS-ANVVVNGA 54 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSC--CC-------------------------------------CB-CCCC----
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------CCCe---eeeeEE-EEEEECCE
Confidence 4567899999999999999999997432 1100 0000 000000 00112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++++|+|+++... +. ... ..+..+.. .++| +++|+||+|+.+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 127 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD 127 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhhcC
Confidence 4567799999999998888888899999999999986521 11 121 22333333 2678 8999999999752
Q ss_pred CCcHHHHH-------HHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFE-------EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~-------~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. .. ...++...+.+.+++ .+++++||++|+|+
T Consensus 128 --~~~-~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi 168 (182)
T 3bwd_D 128 --KQF-FIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENV 168 (182)
T ss_dssp --HHH-HHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTH
T ss_pred --ccc-ccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCH
Confidence 110 00 012233334444443 36899999999999
No 138
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.71 E-value=9.2e-19 Score=158.39 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=89.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
..++|+++|++|+|||||+++|+... ...+...+++.+.....+..++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 80 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-------------------------------YTESYISTIGVDFKIRTIELDGK 80 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-------------------------------CCCHHHHHHCCSEEEEEEEETTE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCCcCCcccceEEEEEEEECCE
Confidence 46899999999999999999996311 0111122333334444444444
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc---CCceEEEEEEccCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL---GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~---~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|+++... +. .....+..+... ++| +++|+||+|+.+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTTK 153 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---HH---HHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccCCCC-EEEEEECccCCcc
Confidence 679999999999998888888899999999999987521 11 223333333333 577 8888999999752
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.. ... ++...+...++ ++++++||++|.|+
T Consensus 154 ~~--v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 154 KV--VDY----TTAKEFADSLG-----IPFLETSAKNATNV 183 (199)
T ss_dssp CC--CCS----CC-CHHHHTTT-----CCBCCCCC---HHH
T ss_pred cc--CCH----HHHHHHHHHcC-----CeEEEEECCCCCCH
Confidence 11 000 11122223333 46899999999998
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.71 E-value=2.1e-17 Score=156.05 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=96.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+.++|+++|++|+|||||+++|+........ ....++|.+.....+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK-----------------------------LGSQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-----------------------------TTSCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------------------CCCCceeeeeEEEEEEeCC
Confidence 35689999999999999999999854322110 0011245555555677888
Q ss_pred EEEEEEeCCCccch-----------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-----CCceE
Q psy13961 85 FYVTIIDAPGHRDF-----------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-----GVKQL 148 (459)
Q Consensus 85 ~~~~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-----~ip~i 148 (459)
..+.||||||+.++ ...+..+++.+|++|+|+|++. +. .+....+..+... +.| .
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~------~~~~~~~~~l~~~~~~~~~~~-~ 141 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YT------SQDQQAAQRVKEIFGEDAMGH-T 141 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CC------HHHHHHHHHHHHHHCGGGGGG-E
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CC------HHHHHHHHHHHHHhCchhhcc-E
Confidence 99999999999765 2223346678999999999974 21 1444455555544 567 5
Q ss_pred EEEEE-ccCCCCCCCcHHHHHHHH-----HHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 149 IVGVN-KMDSTEPPYSEARFEEIK-----KEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 149 ivviN-K~D~~~~~~~~~~~~~i~-----~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++++| |+|+.+.. +.... +++..+++.++.....+..+++||++|.|+
T Consensus 142 i~vv~nK~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv 195 (260)
T 2xtp_A 142 IVLFTHKEDLNGGS-----LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQV 195 (260)
T ss_dssp EEEEECGGGGTTCC-----HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHH
T ss_pred EEEEEcccccCCcc-----HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHH
Confidence 56667 99998521 22211 223334444332100011188999999988
No 140
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=150.12 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=93.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|.+|+|||||+++|+...-.. ...+ ..+.+. .....+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------------------~~~~---t~~~~~-~~~~~~~~~~ 71 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSE--------------------------GYDP---TVENTY-SKIVTLGKDE 71 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------------------CCCC---CSEEEE-EEEEC----C
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCC--------------------------CCCC---ccceEE-EEEEEECCEE
Confidence 457899999999999999999997432110 0000 001111 2222334456
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. .....+..+.. .++| +++|+||+|+.+.
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 3oes_A 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---SFQ---VIESLYQKLHEGHGKTRVP-VVLVGNKADLSPE 144 (201)
T ss_dssp EEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---HHH---HHHHHHHHHHC-----CCC-EEEEEECTTCGGG
T ss_pred EEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccCccc
Confidence 78999999999999888888889999999999998642 111 22223333322 3678 8999999999742
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +... ++...+.+..+ ++++++||++|.|+
T Consensus 145 ~--~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 145 R--EVQA----VEGKKLAESWG-----ATFMESSARENQLT 174 (201)
T ss_dssp C--CSCH----HHHHHHHHHHT-----CEEEECCTTCHHHH
T ss_pred c--ccCH----HHHHHHHHHhC-----CeEEEEeCCCCCCH
Confidence 1 1111 12223333333 37999999999998
No 141
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=3.7e-17 Score=149.14 Aligned_cols=153 Identities=15% Similarity=0.105 Sum_probs=95.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|++|+|||||+++|+...- . .+..+ ..+.... ....+...
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~--~------------------------~~~~~---t~~~~~~-~~~~~~~~ 55 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKF--P------------------------TDYIP---TVFDNFS-ANVAVDGQ 55 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCC--C------------------------SSCCC---SSCCCEE-EEEECSSC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCC--C------------------------ccCCC---ccceeEE-EEEEECCE
Confidence 45679999999999999999999974310 0 00000 0011110 01112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|+++.. .+. ... .++..+... ++| +++|+||+|+.+.
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 128 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA---SYE---NVLKKWMPELRRFAPNVP-IVLVGTKLDLRDD 128 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhC
Confidence 468999999999999888888889999999999998652 111 122 233344333 788 8999999999752
Q ss_pred CCcHHHH-HH-----HHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARF-EE-----IKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~-~~-----i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
... .. ..++...+.+.+++ .+++++||++|+|+
T Consensus 129 ----~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi 167 (212)
T 2j0v_A 129 ----KGYLADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNV 167 (212)
T ss_dssp ----HHHHHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTH
T ss_pred ----ccccccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCH
Confidence 110 00 12233334444443 36899999999999
No 142
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.70 E-value=1.3e-17 Score=158.10 Aligned_cols=141 Identities=19% Similarity=0.168 Sum_probs=93.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|++|+|||||+++|+..... +.+ ..|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------v~~------~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------VGN------WPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------CCS------SSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------ccC------CCCCcEEEEEEEEec-CCe
Confidence 468999999999999999999732100 011 126666655555555 678
Q ss_pred EEEEeCCCccchHh------HHHHhhc--ccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCC
Q psy13961 87 VTIIDAPGHRDFIK------NMITGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158 (459)
Q Consensus 87 ~~liDtpG~~~~~~------~~~~~~~--~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~ 158 (459)
+.||||||+.+|.. .....+. .+|++++|+|++.. + ........+...++| +++|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e-------~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--E-------RNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--H-------HHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--H-------hHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 99999999988752 2222333 59999999999752 1 233344455667999 89999999985
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... +......+.+.++ ++++++||++|+|+
T Consensus 121 ~~~~-------~~~~~~~l~~~lg-----~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 121 DGQG-------KKINVDKLSYHLG-----VPVVATSALKQTGV 151 (272)
T ss_dssp HHTT-------CCCCHHHHHHHHT-----SCEEECBTTTTBSH
T ss_pred CcCC-------cHHHHHHHHHHcC-----CCEEEEEccCCCCH
Confidence 3100 0011122222334 36999999999999
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.70 E-value=9.4e-17 Score=163.06 Aligned_cols=154 Identities=23% Similarity=0.197 Sum_probs=100.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+..... .+. ...|+|.+.....+.+++.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~------------------------~v~------~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERA------------------------LVS------PIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTE------------------------EEC------CCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccc------------------------ccC------CCCCCcCCceEEEEEECCE
Confidence 3579999999999999999999743211 111 1235666666667788888
Q ss_pred EEEEEeCCCccchHhH------------HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEE
Q psy13961 86 YVTIIDAPGHRDFIKN------------MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~------------~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviN 153 (459)
.+.+|||||+.++... ....+..+|++++|+|+..+..+ +..+....+...+.| +++|+|
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~-------~~~~i~~~l~~~~~~-~ilv~N 300 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-------QDQRMAGLMERRGRA-SVVVFN 300 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-------HHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCC-EEEEEE
Confidence 9999999998654321 23456789999999999876332 444445556677888 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
|+|+.+. .+...+++.+++...+...+ ..+++++||++|.|+.+
T Consensus 301 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~ 344 (439)
T 1mky_A 301 KWDLVVH--REKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDR 344 (439)
T ss_dssp CGGGSTT--GGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHH
T ss_pred CccCCCc--hhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHH
Confidence 9999762 11223444445544333332 35789999999999843
No 144
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=8.7e-17 Score=166.09 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=102.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|.+|+|||||+++|+... . .. ...|++..+..++..+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~--~-------------------------~~-------~~~T~~~~~~~~~~~~ 365 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ--S-------------------------VT-------TIPTVGFNVETVTYKN 365 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS--C-------------------------CC-------CCCCSSEEEEEEESSS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC--C-------------------------CC-------cCCccceeEEEEEeCC
Confidence 457899999999999999999997432 0 00 0124555566677788
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++|+|+|+++.. .+. ...+.+..+.. .++| +|+|+||+|+.+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD---RID---EARQELHRIINDREMRDAI-ILIFANKQDLPDA 438 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG---GHH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh---HHH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC
Confidence 99999999999999988888999999999999998652 111 22223322222 3678 8999999999763
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+++.+.+. ........++++++||++|+|+
T Consensus 439 ----~~~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 439 ----MKPHEIQEKLG----LTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp ----CCHHHHHHHTT----CTTCCSSCEEEEECBTTTTBTH
T ss_pred ----CCHHHHHHHhc----hhhhhcCCeEEEEEECCCCCCH
Confidence 11223333221 1111223568999999999999
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=8.2e-17 Score=150.78 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|++|+|||||+++|+.....+.. ....|.|.......+.+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSR-----------------------------LGATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCccccEEEEEEEEC
Confidence 356799999999999999999999854322110 011245555555667788
Q ss_pred CEEEEEEeCCCc--------cchHhHHHHhh----cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc------CC
Q psy13961 84 KFYVTIIDAPGH--------RDFIKNMITGT----SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL------GV 145 (459)
Q Consensus 84 ~~~~~liDtpG~--------~~~~~~~~~~~----~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~------~i 145 (459)
+..+.||||||+ +++...+.+.+ ..+|++|+|+|++. +. ......+..+... +.
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~------~~~~~~~~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR--FT------AQDQQAVRQVRDMFGEDVLKW 140 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB--CC------HHHHHHHHHHHHHHCGGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--CC------HHHHHHHHHHHHHhChhhhcc
Confidence 999999999998 56666666655 88999999999973 21 1344445544443 67
Q ss_pred ceEEEEEEccCCCCCCCcHHHHHHHH-----HHHHhhhhhcCc
Q psy13961 146 KQLIVGVNKMDSTEPPYSEARFEEIK-----KEVSGYIKKIGY 183 (459)
Q Consensus 146 p~iivviNK~D~~~~~~~~~~~~~i~-----~~l~~~l~~~g~ 183 (459)
| +|++.||+|+.+. .+++.. +.++.+++.+|.
T Consensus 141 ~-iilv~nK~Dl~~~-----~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 141 M-VIVFTRKEDLAGG-----SLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp E-EEEEECGGGGTTC-----CHHHHHHHCCCHHHHHHHHHTTT
T ss_pred E-EEEEEchHhcCCC-----CHHHHHhhcccHHHHHHHHHcCC
Confidence 7 8888999999762 222222 346666666654
No 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.69 E-value=1.4e-16 Score=142.31 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=90.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++.++|+++|..|+|||||+++|+...-. ....+ |.+.....+..+
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--------------------------~~~~~-------t~~~~~~~~~~~ 63 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV--------------------------QEESP-------EGGRFKKEIVVD 63 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC--------------------------CCCCT-------TCEEEEEEEEET
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC--------------------------CCcCC-------CcceEEEEEEEC
Confidence 566899999999999999999999743100 00000 111111223334
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
+ ..+.||||||+++|. .++.+|++++|+|+++.. .+. .....+..+.. .++| +++|.||+|+
T Consensus 64 ~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (184)
T 3ihw_A 64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI---SFQ---TVYNYFLRLCSFRNASEVP-MVLVGTQDAI 131 (184)
T ss_dssp TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHTTSCGGGSC-EEEEEECTTC
T ss_pred CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 567889999999986 567799999999998752 121 22333333333 3577 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+..+... +++..+.+.++ .++++++||++|+|+
T Consensus 132 ~~~~~~~v~~----~~~~~~~~~~~----~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 132 SAANPRVIDD----SRARKLSTDLK----RCTYYETCATYGLNV 167 (184)
T ss_dssp BTTBCCCSCH----HHHHHHHHHTT----TCEEEEEBTTTTBTH
T ss_pred ccccccccCH----HHHHHHHHHcC----CCeEEEecCCCCCCH
Confidence 5311111111 22333333333 247899999999998
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=4.2e-17 Score=166.47 Aligned_cols=145 Identities=23% Similarity=0.323 Sum_probs=97.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.+...+|+++|++|+|||||+++|+...-. . .....|+|.+..+..+++.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~------------------------~------v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS------------------------I------VEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCc------------------------c------cCCCCCcceeEEEEEEEEC
Confidence 345678999999999999999999642111 0 1123478888877778888
Q ss_pred CEEEEEEeCCC--------ccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEcc
Q psy13961 84 KFYVTIIDAPG--------HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155 (459)
Q Consensus 84 ~~~~~liDtpG--------~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~ 155 (459)
+..+.+||||| ++.|...+..++..+|++|+|+|+..+..+ ...+.+.+++..++| +++|+||+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-------~d~~l~~~l~~~~~p-vilV~NK~ 141 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA-------ADEEVAKILYRTKKP-VVLAVNKL 141 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-------HHHHHHHHHTTCCSC-EEEEEECC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-------HHHHHHHHHHHcCCC-EEEEEECc
Confidence 89999999999 677777888888999999999999876433 556666777778899 88999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+. . .....+. .+++. ..+++||.+|.|+
T Consensus 142 D~~~~-----~-----~~~~e~~-~lg~~----~~~~iSA~~g~gv 172 (456)
T 4dcu_A 142 DNTEM-----R-----ANIYDFY-SLGFG----EPYPISGTHGLGL 172 (456)
T ss_dssp -------------------CCSG-GGSSS----SEEECCTTTCTTH
T ss_pred cchhh-----h-----hhHHHHH-HcCCC----ceEEeecccccch
Confidence 98751 0 1122222 23442 3579999999998
No 148
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.68 E-value=3.7e-16 Score=141.15 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=92.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
..+.++|+++|+.|+|||||+++|+... .. .+ . ...+.+.....+..+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~------------------------~~-----~-~~t~~~~~~~~~~~~ 64 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YP------------------------TE-----Y-IPTAFDNFSAVVSVD 64 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC------------------------CC-----C-CCcccceeEEEEEEC
Confidence 3457899999999999999999997421 00 00 0 000111111223334
Q ss_pred C--EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHH--cCCceEEEEEEccCCC
Q psy13961 84 K--FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFT--LGVKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~--~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~--~~ip~iivviNK~D~~ 158 (459)
+ ..+.||||||+++|...+...+..+|++|+|+|+++... +. ... .++..+.. .++| +++|+||+|+.
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 137 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---FQ---NVSEKWVPEIRCHCPKAP-IILVGTQSDLR 137 (201)
T ss_dssp TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSSC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhh
Confidence 4 467799999999998877778889999999999986521 11 111 22223333 2778 88999999997
Q ss_pred CCCCcHHHHHH---------HHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 159 EPPYSEARFEE---------IKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~---------i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.. ....+ ..++...+.+.+++ .+++++||++|.|+
T Consensus 138 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 138 EDV---KVLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNL 182 (201)
T ss_dssp GCH---HHHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTH
T ss_pred hch---hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCH
Confidence 520 00000 01222333333332 37899999999999
No 149
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.68 E-value=2.5e-16 Score=139.29 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=87.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.++..+|+++|..|+|||||+++|+...- .+..+ ..+... ...+..+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~---------------------------~~~~~---t~~~~~---~~~~~~~ 50 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSY---------------------------QVLEK---TESEQY---KKEMLVD 50 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCC---------------------------CCCSS---CSSSEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCC---------------------------CCcCC---CcceeE---EEEEEEC
Confidence 45679999999999999999999974210 00000 011111 1122223
Q ss_pred --CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEcc
Q psy13961 84 --KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKM 155 (459)
Q Consensus 84 --~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~ 155 (459)
...+.||||||++++ ..++.+|++|+|+|+++.. .+. ....++..+.. .++| +++|.||+
T Consensus 51 ~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~ 118 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN---SFQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQD 118 (178)
T ss_dssp TEEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECT
T ss_pred CEEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHH---HHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 357899999999873 3567799999999998652 111 12222212222 2567 88999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+....+...++ +..+.+..+ .++++++||++|.|+
T Consensus 119 Dl~~~~~~~v~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 119 RISASSPRVVGDAR----ARALXADMK----RCSYYETXATYGLNV 156 (178)
T ss_dssp TCBTTBCCCSCHHH----HHHHHHHHS----SEEEEEEBTTTTBTH
T ss_pred cccccccCcCCHHH----HHHHHHhhc----CCeEEEEeccccCCH
Confidence 99421111111122 222333221 357999999999998
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=3.1e-16 Score=141.28 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=91.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+...-. ....+ ..+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--------------------------~~~~~---t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI--------------------------WEYDP---TLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC--------------------------SCCCT---TCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--------------------------cccCC---CCCceE-EEEEEECCEE
Confidence 45789999999999999999999753110 00000 001111 1111222234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++ ...+...+..+|++++|+|+++.. .+. ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~ 147 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFE---EVLPLKNILDEIKKPKNVT-LILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHHTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHH---HHHHHHHHHHHhhCCCCCc-EEEEEECcccccc
Confidence 6799999999988 555667778899999999998642 121 22333333322 4778 8999999999651
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCC-cc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGD-NM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~-~i 201 (459)
.+...+ +...+.+..+ ++++++||++|. |+
T Consensus 148 --~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 148 --RQVSTE----EGEKLATELA-----CAFYECSACTGEGNI 178 (196)
T ss_dssp --CCSCHH----HHHHHHHHHT-----SEEEECCTTTCTTCH
T ss_pred --cccCHH----HHHHHHHHhC-----CeEEEECCCcCCcCH
Confidence 111112 2222333333 479999999999 98
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=2.1e-16 Score=150.34 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=84.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|++|+|||||+++|+........ . .........+++++.....+..++
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~---------------------~--~~~~~~~~~t~~~~~~~~~~~~~~ 62 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE---------------------Y--PGPSHRIKKTVQVEQSKVLIKEGG 62 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccC---------------------C--CCcccccCCceEEEEEEEEEecCC
Confidence 34689999999999999999998632211100 0 000001122333343333444443
Q ss_pred --EEEEEEeCCCccch-------HhHH-------HHhhc-------------ccCEEEEEEECCC-CceeccccCCCchH
Q psy13961 85 --FYVTIIDAPGHRDF-------IKNM-------ITGTS-------------QADCAVLIVAAGT-GEFEAGISKNGQTR 134 (459)
Q Consensus 85 --~~~~liDtpG~~~~-------~~~~-------~~~~~-------------~aD~~ilVvda~~-g~~~~~~~~~~qt~ 134 (459)
..++||||||+.++ .... ..++. .+|+++++|+... +..+ ...
T Consensus 63 ~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~-------~d~ 135 (274)
T 3t5d_A 63 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP-------LDI 135 (274)
T ss_dssp CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCH-------HHH
T ss_pred eEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCH-------HHH
Confidence 48999999998432 1111 11222 2789999997764 3221 445
Q ss_pred HHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 135 EHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 135 e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+..+.. ++| +|+|+||+|+.. .......++.+.+.+...+ ++++++||.+++|+
T Consensus 136 ~~l~~l~~-~~p-vi~V~nK~D~~~----~~e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 136 EFMKRLHE-KVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEE 191 (274)
T ss_dssp HHHHHHTT-TSC-EEEEESSGGGSC----HHHHHHHHHHHHHHHHHTT-----CCCCCC--------
T ss_pred HHHHHHhc-cCC-EEEEEeccCCCC----HHHHHHHHHHHHHHHHHcC-----CeEEcCCCCCChhH
Confidence 55555544 788 899999999975 2445555566666665444 35788999999988
No 152
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=4.7e-16 Score=140.20 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=91.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
....+|+++|.+|+|||||+++|+....... ...+++.+.....+..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 69 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-------------------------------HEPENPEDTYERRIMVDK 69 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG-------------------------------GTTTSCTTEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc-------------------------------CCCCcccceEEEEEEECC
Confidence 4568999999999999999999953211110 00111222222223333
Q ss_pred -CEEEEEEeCCCccchHh-HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 84 -KFYVTIIDAPGHRDFIK-NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 -~~~~~liDtpG~~~~~~-~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
...+.+|||||+++|.. .....++.+|++|+|+|+++.. .+. ...+.+..+.. .++| +++|.||+|+
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 142 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR---SFS---KVPETLLRLRAGRPHHDLP-VILVGNKSDL 142 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH---HHH---THHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCCC-EEEEeechhc
Confidence 35678999999998765 3445567899999999998642 121 23333333333 3678 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. +...+ +...+.+..+ ++++++||++|.|+
T Consensus 143 ~~~~--~v~~~----~~~~~a~~~~-----~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 143 ARSR--EVSLE----EGRHLAGTLS-----CKHIETSAALHHNT 175 (195)
T ss_dssp TTTC--CSCHH----HHHHHHHHTT-----CEEEEEBTTTTBSH
T ss_pred cccC--CcCHH----HHHHHHHHhC-----CEEEEEcCCCCCCH
Confidence 7521 11112 2222333333 36899999999998
No 153
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=1.9e-16 Score=161.36 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=83.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.....+ .....|+|.+.....+..++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 35789999999999999999997431111 111246677777777888899
Q ss_pred EEEEEeCCCccchHhH--------HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-CCceEEEEEEccC
Q psy13961 86 YVTIIDAPGHRDFIKN--------MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-GVKQLIVGVNKMD 156 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~--------~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-~ip~iivviNK~D 156 (459)
.+.||||||+.++... +...+..+|++++|+|++.+... .+..+...++..+ ++| +++|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECcC
Confidence 9999999999876432 23456789999999999876322 0222333334333 566 899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 157 STEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 157 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+.+.. . .+. +++.. .++ .+++++||++|+|+
T Consensus 355 l~~~~--~--~~~--~~l~~----~~~----~~~i~vSAktg~GI 385 (476)
T 3gee_A 355 RAANA--D--ALI--RAIAD----GTG----TEVIGISALNGDGI 385 (476)
T ss_dssp SCTTT--H--HHH--HHHHH----HHT----SCEEECBTTTTBSH
T ss_pred CCCcc--c--hhH--HHHHh----cCC----CceEEEEECCCCCH
Confidence 98631 1 111 22221 122 36899999999998
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=142.20 Aligned_cols=149 Identities=12% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
....++|+++|..|+|||||+++|+... .. .+..+ ..+.+.. ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~------------------------~~~~~---t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKR--FI------------------------SEYDP---NLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CC------------------------SCCCT---TCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCC--CC------------------------cccCC---Cccceee-EEEEECCE
Confidence 4567899999999999999999997532 00 00000 0111110 11112223
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEccCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKMDS 157 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~D~ 157 (459)
...+.||||||+++|.. +...++.+|++++|+|+++.. .+. ....++..+.. .++| +++|+||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQ---SFD---SSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 46788999999998865 356778899999999998642 121 22333333332 3788 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCC-CCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISG-WHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa-~~g~~i 201 (459)
.+. .+... ++...+.+.++ ++++++|| ++|+|+
T Consensus 140 ~~~--~~v~~----~~~~~~~~~~~-----~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 140 AQY--RQVTK----AEGVALAGRFG-----CLFFEVSACLDFEHV 173 (187)
T ss_dssp GGG--CSSCH----HHHHHHHHHHT-----CEEEECCSSSCSHHH
T ss_pred hhc--CccCH----HHHHHHHHHcC-----CcEEEEeecCccccH
Confidence 641 11111 22333344444 36899999 899998
No 155
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.67 E-value=2.5e-16 Score=144.12 Aligned_cols=153 Identities=13% Similarity=0.143 Sum_probs=94.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|..++|||||+++|+...-. ....+ ..+.+.. ....++...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--------------------------~~~~~---t~~~~~~-~~~~~~~~~ 74 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--------------------------ETYVP---TVFENYT-ACLETEEQR 74 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------SSCCC---CSEEEEE-EEEEC--CE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--------------------------CCcCC---eeeeeEE-EEEEECCEE
Confidence 45689999999999999999999743110 00000 0011110 111233345
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCc-hHHHHHHHHHc--CCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ-TREHALLAFTL--GVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~q-t~e~~~~~~~~--~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...++.+|++|+|+|+++.. .+. . ...++..+... ++| +++|.||+|+.+..
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVD---SALKKWRTEILDYCPSTR-VLLIGCKTDLRTDL 147 (214)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH---HHH---HHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCH
T ss_pred EEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH---HHH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhccch
Confidence 68999999999999888888889999999999998752 111 1 12233344433 677 88999999997410
Q ss_pred CcHHHH---------HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc-c
Q psy13961 162 YSEARF---------EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN-M 201 (459)
Q Consensus 162 ~~~~~~---------~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~-i 201 (459)
... ....++...+.+.+++ .+++++||++|.| +
T Consensus 148 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v 190 (214)
T 3q3j_B 148 ---STLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSI 190 (214)
T ss_dssp ---HHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHH
T ss_pred ---hhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccH
Confidence 000 0011223334444443 2689999999998 8
No 156
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=3.8e-16 Score=139.19 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 83 (459)
.....+|+++|++|+|||||+++|+...-. ....+ ..+.... ....+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~--------------------------~~~~~---t~~~~~~-~~~~~~~~ 53 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFP--------------------------ENYVP---TVFENYT-ASFEIDTQ 53 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--------------------------SSCCC---CSEEEEE-EEEECSSC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCC--------------------------CCCCC---ccceeEE-EEEEECCE
Confidence 456789999999999999999999743100 00000 0011110 01112233
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~~~~ 160 (459)
...+.||||||+++|...+...+..+|++|+|+|+++.. .+. .. ...+..+.. .+.| +++|.||+|+.+.
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 126 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH---HHH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc
Confidence 468999999999999887777889999999999998642 111 11 122223332 3677 8999999999742
Q ss_pred CCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCC-CCCcc
Q psy13961 161 PYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGW-HGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~-~g~~i 201 (459)
.....++ .++...+.+.++ ..+++++||+ +|.|+
T Consensus 127 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~gi 170 (184)
T 1m7b_A 127 ---VSTLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSV 170 (184)
T ss_dssp ---HHHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECBTTTBHHHH
T ss_pred ---hhhHhhhhhcccCCCCHHHHHHHHHHcC----CcEEEEeeecCCCcCH
Confidence 0111110 122333444443 2479999998 68888
No 157
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.66 E-value=3.5e-16 Score=139.67 Aligned_cols=149 Identities=26% Similarity=0.272 Sum_probs=87.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEE
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYV 87 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~ 87 (459)
.+|+++|++|+|||||+++|+...-. .....|+|.+.... ... .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~--~~~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-------------------------------RGKRPGVTRKIIEI--EWK--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-------------------------------SSSSTTCTTSCEEE--EET--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-------------------------------cCCCCCccceeEEE--ecC--CE
Confidence 58999999999999999999742100 00112333333222 222 68
Q ss_pred EEEeCCC-----------ccchHhHHHHh----hcccCEEEEEEECCCCcee-ccc---cCCCchHHHHHHHHHcCCceE
Q psy13961 88 TIIDAPG-----------HRDFIKNMITG----TSQADCAVLIVAAGTGEFE-AGI---SKNGQTREHALLAFTLGVKQL 148 (459)
Q Consensus 88 ~liDtpG-----------~~~~~~~~~~~----~~~aD~~ilVvda~~g~~~-~~~---~~~~qt~e~~~~~~~~~ip~i 148 (459)
.++|||| ++.|...+... +..+++++.|+|+.....- ..+ ....+..+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 8999999 55565544443 4456788888887532000 000 0001223344455567899 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCcc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNM 201 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i 201 (459)
++|+||+|+.+. + . +.+..+.+.+++... ..+++++||++|+|+
T Consensus 126 ilv~nK~Dl~~~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 126 IVAVNKLDKIKN-----V-Q---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp EEEEECGGGCSC-----H-H---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred EEEeehHhccCc-----H-H---HHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 999999999862 1 1 222333333443111 246899999999999
No 158
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.65 E-value=1.4e-16 Score=162.52 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=98.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.+|+|||||+++|+.....+. .+ ..|.|.+.....+..++..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v------------------------s~------~~gTT~d~~~~~i~~~g~~ 292 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV------------------------TD------IPGTTRDVISEEIVIRGIL 292 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC------------------------CC------SSCCSSCSCCEEEEETTEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc------------------------CC------CCCeeeeeEEEEEecCCeE
Confidence 47999999999999999999986422111 11 1356777777777888899
Q ss_pred EEEEeCCCcc-chH--------hHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 87 VTIIDAPGHR-DFI--------KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 87 ~~liDtpG~~-~~~--------~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
+.||||||+. ++. ..+...+..+|++|+|+|++.+... +..+.+..+ .+.| +++|+||+|+
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~il~~l--~~~p-iivV~NK~DL 362 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE-------EDRKILERI--KNKR-YLVVINKVDV 362 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCH-------HHHHHHHHH--TTSS-EEEEEEECSS
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCH-------HHHHHHHHh--cCCC-EEEEEECccc
Confidence 9999999998 653 3456678899999999999876221 233333332 4677 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. . ..++ +..++ +. ..+++++||++|+|+
T Consensus 363 ~~~-~---~~~~----~~~~~---~~---~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 363 VEK-I---NEEE----IKNKL---GT---DRHMVKISALKGEGL 392 (482)
T ss_dssp CCC-C---CHHH----HHHHH---TC---STTEEEEEGGGTCCH
T ss_pred ccc-c---CHHH----HHHHh---cC---CCcEEEEECCCCCCH
Confidence 752 1 1122 22222 11 246899999999998
No 159
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.46 E-value=1e-17 Score=152.08 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=93.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
+..++|+++|++|+|||||+++|+... .... ..+ ..+... .....+....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~ 77 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGE------------------------YIP---TVFDNY-SANVMVDGKP 77 (204)
Confidence 457899999999999999999996321 0000 000 000000 0001122234
Q ss_pred EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCCC
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~~~~ 161 (459)
..+.||||||+++|...+...+..+|++|+|+|+++... +. ... ..+..+... ++| +++|+||+|+.+..
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 150 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 150 (204)
Confidence 567799999999998888888899999999999986521 21 222 223333333 778 88999999997521
Q ss_pred CcHHHHH------HHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 162 YSEARFE------EIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~------~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
...+.+. ...++...+.+..++ .+++++||++|+|+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi 192 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGL 192 (204)
Confidence 1000000 011222223232222 36899999999999
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.64 E-value=8.7e-16 Score=139.62 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=93.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeee-eEE--e
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIAL-WKF--E 81 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~-~~~--~ 81 (459)
+..++|+++|..|+|||||+++|+...-. .+. ..|+...+ ..+ +
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--------------------------~~~-------~~t~~~~~~~~~~~~ 72 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--------------------------ENY-------VPTVFENYTASFEID 72 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--------------------------SSC-------CCCSEEEEEEEEESS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--------------------------CCc-------CCccceeEEEEEEEC
Confidence 45689999999999999999999742110 000 00111111 122 2
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCch-HHHHHHHHH--cCCceEEEEEEccCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT-REHALLAFT--LGVKQLIVGVNKMDST 158 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt-~e~~~~~~~--~~ip~iivviNK~D~~ 158 (459)
.....+.||||||+++|...+...+..+|++|+|+|+++.. .+. .. ...+..+.. .++| +++|.||+|+.
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE---TLD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH---HHH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 33468999999999999887777888999999999998642 111 11 122233333 3677 89999999997
Q ss_pred CCCCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCC-CCCcc
Q psy13961 159 EPPYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGW-HGDNM 201 (459)
Q Consensus 159 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~-~g~~i 201 (459)
+. .....++ .++...+.+.++ ..+++++||+ +|+|+
T Consensus 146 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~gv 191 (205)
T 1gwn_A 146 TD---VSTLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSV 191 (205)
T ss_dssp GC---HHHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECCTTTCHHHH
T ss_pred cc---hhhhhhhcccccCCCCHHHHHHHHHHcC----CCEEEEeeeccCCcCH
Confidence 42 0111110 122333444433 2478999999 68888
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.64 E-value=6.8e-16 Score=137.62 Aligned_cols=155 Identities=14% Similarity=0.222 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe-----
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE----- 81 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~----- 81 (459)
..+|+++|.+|+|||||+++|+....... .+....+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~-----------------------------~~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDL-----------------------------GMQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccC-----------------------------CCcceeccEEeEEeeeccccCC
Confidence 46899999999999999999963210000 00001111222111111
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH--cCCceEEEEEEccCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~--~~ip~iivviNK~D~~~ 159 (459)
.....+.+|||||+++|.......++.+|++++|+|.+.+. ..+. ....++..+.. .+.| +++|.||+|+.+
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~s~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 126 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ--AEVD---AMKPWLFNIKARASSSP-VILVGTHLDVSD 126 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH--HHHH---THHHHHHHHHHHCTTCE-EEEEEECGGGCC
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch--hHHH---HHHHHHHHHHhhCCCCc-EEEEEECCCccc
Confidence 13568899999999998877677778899999999997652 0111 22333333332 3677 888899999975
Q ss_pred CCCcHHHHHHH-HHHHHhhhhhcCcCCceeeEeecCCCCCC-cc
Q psy13961 160 PPYSEARFEEI-KKEVSGYIKKIGYNPATVAFVPISGWHGD-NM 201 (459)
Q Consensus 160 ~~~~~~~~~~i-~~~l~~~l~~~g~~~~~~~~i~iSa~~g~-~i 201 (459)
. ...... .+....+.+..++. ...+++++||++|. ++
T Consensus 127 ~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 127 E----KQRKACMSKITKELLNKRGFP-AIRDYHFVNATEESDAL 165 (184)
T ss_dssp H----HHHHHHHHHHHHHTTTCTTSC-EEEEEEECCTTSCCHHH
T ss_pred c----hhhHHHHHHHHHHHHHhcCCc-chhheEEEecccCchhH
Confidence 1 111111 22233344444442 12358999999996 77
No 162
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=8.1e-16 Score=140.84 Aligned_cols=150 Identities=14% Similarity=0.162 Sum_probs=86.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|++|+|||||+++|+...-... ... ...|+... +..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------------------~~~-------~~~~~~~~-----~~~ 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------------------VVS-------QEPLSAAD-----YDG 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------------------CCC-------SSCEEETT-----GGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------------------eee-------cCceEEEE-----eeC
Confidence 4567999999999999999999975321000 000 01111111 145
Q ss_pred EEEEEEeCCCccchHhHHHHhhcc----cCEEEEEEECC-CCceeccccCCCchHHHHHHHHH-------cCCceEEEEE
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQ----ADCAVLIVAAG-TGEFEAGISKNGQTREHALLAFT-------LGVKQLIVGV 152 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~----aD~~ilVvda~-~g~~~~~~~~~~qt~e~~~~~~~-------~~ip~iivvi 152 (459)
..+.||||||+++|...+...+.. +|++|+|+|++ .. ..+. ...+++..+.. .++| +++|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 127 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KKLT---TTAEFLVDILSITESSCENGID-ILIAC 127 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---TCCH---HHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh---HHHH---HHHHHHHHHHhcccccccCCCC-EEEEE
Confidence 678999999999998777777766 89999999998 32 1111 23333332221 4788 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+.+........+.+.+++..+....+ .+++++||++|++-
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEED 171 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC---------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHHh-----cccccccccccccc
Confidence 999998642222222333344444433322 46899999998763
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=6.1e-16 Score=157.00 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=87.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
..++|+++|++|+|||||+++|+.....+. .+ ..|+|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------~~------~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIV------------------------TD------LPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCC------------------------SC------CTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccc------------------------cC------CCCeeEEEEEEEEEECCE
Confidence 357899999999999999999986432211 11 124555555556677889
Q ss_pred EEEEEeCCCccchHhH--------HHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 86 YVTIIDAPGHRDFIKN--------MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~--------~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.+.||||||+.++... +...+..+|++++|+|++.+..+ +..+.+..+ ...| +++|+||+|+
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~-------~~~~i~~~l--~~~p-iivV~NK~Dl 342 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTT-------GDQEIYEQV--KHRP-LILVMNKIDL 342 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCSCH-------HHHHHHHHH--TTSC-EEEEEECTTS
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCH-------HHHHHHHhc--cCCc-EEEEEECCCC
Confidence 9999999999775432 33356789999999999876322 333333333 3456 8899999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+.. ... . ++.+. ...+++++||++|+|+
T Consensus 343 ~~~~----~~~----~----~~~~~---~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 343 VEKQ----LIT----S----LEYPE---NITQIVHTAAAQKQGI 371 (462)
T ss_dssp SCGG----GST----T----CCCCT---TCCCEEEEBTTTTBSH
T ss_pred Ccch----hhH----H----HHHhc---cCCcEEEEECCCCCCH
Confidence 8621 100 1 11111 2357899999999998
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=141.10 Aligned_cols=149 Identities=14% Similarity=0.218 Sum_probs=87.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...... ......++|.+.....+.+.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 77 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH-----------------------------SGTAAKSITKKCEKRSSSWKE 77 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC-----------------------------C-------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc-----------------------------cCCCCCceeeeEEEEEEEeCC
Confidence 456899999999999999999997432110 001112456666666777888
Q ss_pred EEEEEEeCCCcc-----------chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-----HcCCceE
Q psy13961 85 FYVTIIDAPGHR-----------DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-----TLGVKQL 148 (459)
Q Consensus 85 ~~~~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-----~~~ip~i 148 (459)
..+.||||||+. .+...+......+|++|+|+|++... . ...+.+..+. ....| +
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~-------~~~~~l~~~~~~~~~~~~~~-~ 148 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT-E-------EEHKATEKILKMFGERARSF-M 148 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS-S-------HHHHHHHHHHHHHHHHHGGG-E
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC-H-------HHHHHHHHHHHHhhhhccce-E
Confidence 999999999954 34444555566789999999986421 1 3333333222 23457 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCC
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGW 196 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~ 196 (459)
++|+||+|+......+..+....+.++.+++.++. .++++++.
T Consensus 149 iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~ 191 (239)
T 3lxx_A 149 ILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNK 191 (239)
T ss_dssp EEEEECGGGC------------CHHHHHHHHHHSS-----SEEECCTT
T ss_pred EEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECC
Confidence 88899999975311111111112346666666654 24555544
No 165
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=6e-16 Score=151.13 Aligned_cols=145 Identities=18% Similarity=0.122 Sum_probs=91.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-EEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-FYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~~ 87 (459)
+|+++|.+|||||||+++|+.....+ .+ ....|.+.....+...+ ..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------~~------~~ftTl~p~~g~v~~~~~~~~ 208 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------AD------YHFTTLVPNLGMVETDDGRSF 208 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE-------------------------SS------TTSSCCCCCEEEEECSSSCEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------cc------CCccccCceEEEEEeCCCceE
Confidence 68999999999999999996421111 00 11334455555566554 789
Q ss_pred EEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-----cCCceEEEEEEcc
Q psy13961 88 TIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-----LGVKQLIVGVNKM 155 (459)
Q Consensus 88 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-----~~ip~iivviNK~ 155 (459)
.|+||||+.+ +....++.+..+|++|+|+|++.......++ +....+..+.. .++| +++|+||+
T Consensus 209 ~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~---~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 209 VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYD---DYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp EEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHH---HHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred EEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHH---HHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 9999999754 3445566677799999999997521011110 22333334443 3678 78889999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+. .+. .+++. +.+.. ..+++++||++++|+
T Consensus 285 Dl~~~---~e~----~~~l~---~~l~~---~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 285 DMPEA---AEN----LEAFK---EKLTD---DYPVFPISAVTREGL 317 (342)
T ss_dssp TSTTH---HHH----HHHHH---HHCCS---CCCBCCCSSCCSSTT
T ss_pred cCCCC---HHH----HHHHH---HHhhc---CCCEEEEECCCCcCH
Confidence 99751 111 12222 22221 156899999999999
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=1.4e-15 Score=148.30 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=94.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
...+|+++|.+|+|||||+++|+... .. .. ..+.+.+.....+..++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~------------------------~~------~~~t~~~~~~~~~~~~~~ 201 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FP------------------------GE------YIPTVFDNYSANVMVDGK 201 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CC------------------------CS------CCCCSEEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CC------------------------cc------cCCcccceeEEEEEECCE
Confidence 45899999999999999999997421 10 00 01111111122233344
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHc--CCceEEEEEEccCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTL--GVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~--~ip~iivviNK~D~~~~ 160 (459)
..+.||||||+++|...+...+..+|++++|+|+++... +. ... ..+..+... ++| +++|+||+|+.+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FH---HVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 274 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSC-EEEEEECHHHHTC
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhCCCCc-EEEEEEchhcccc
Confidence 456699999999998888888899999999999986521 10 111 222333333 788 8999999999652
Q ss_pred CCcHHHHHHH---------HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEI---------KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. ...+.+ .++...+.+..++ .+++++||++|+|+
T Consensus 275 ~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 275 K---DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGL 317 (332)
T ss_dssp H---HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTH
T ss_pred c---chhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCH
Confidence 1 111111 1122333333332 37899999999999
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=4.5e-15 Score=146.38 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=91.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
.|+++|++|+|||||+++|+.... ..+...+.|.+.....+..++..+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-------------------------------~~~~~~~~T~d~~~~~i~~~g~~v~ 229 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-------------------------------KVDTKLFTTMSPKRYAIPINNRKIM 229 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-------------------------------cccCCcccccCCEEEEEEECCEEEE
Confidence 499999999999999999973210 0011234566666666777788999
Q ss_pred EEeCCCccc-----h---HhHHHHhhcccCEEEEEEECCCCc--eeccccCCCchHHHHHHHHH---cCCceEEEEEEcc
Q psy13961 89 IIDAPGHRD-----F---IKNMITGTSQADCAVLIVAAGTGE--FEAGISKNGQTREHALLAFT---LGVKQLIVGVNKM 155 (459)
Q Consensus 89 liDtpG~~~-----~---~~~~~~~~~~aD~~ilVvda~~g~--~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~ 155 (459)
++||||+.+ + ...+...+..+|.+++|+|++... .+ .+.......+.. .+.| +++|.||+
T Consensus 230 l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 230 LVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp EEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred EEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 999999722 1 234455678899999999997652 11 022222233333 3577 88999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 156 DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 156 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+.+.. ..+..+.+..+...+.. .+.+++++||++|+|+
T Consensus 303 Dl~~~~-----~~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 303 DKINGD-----LYKKLDLVEKLSKELYS--PIFDVIPISALKRTNL 341 (364)
T ss_dssp GGCCSC-----HHHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSH
T ss_pred CCCCch-----HHHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCH
Confidence 997631 11222222222233211 2456899999999998
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.61 E-value=1.5e-15 Score=143.59 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=78.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++.++|+++|++|+|||||+++|+...... .. ...+.|.......+...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------------------~~------~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------------------VS------PFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC------------------------CC------SSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc------------------------cC------CCCCcceeeEEEEEEECC
Confidence 467999999999999999999998532111 01 113445555566677888
Q ss_pred EEEEEEeCCCccchHhH-------HHHhh--cccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-cC----CceEEE
Q psy13961 85 FYVTIIDAPGHRDFIKN-------MITGT--SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-LG----VKQLIV 150 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~-------~~~~~--~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~~----ip~iiv 150 (459)
..++|||||||.+|... +.+.+ ..+|++++|+|.+...+. ....+.+..+.. .+ .| +++
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~-~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVD------ELDKQVVIAITQTFGKEIWCK-TLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCC------HHHHHHHHHHHHHHCGGGGGG-EEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCC------HHHHHHHHHHHHHhchhhhcC-EEE
Confidence 99999999999876322 22222 278999999998754222 122344444433 23 26 889
Q ss_pred EEEccCCCC
Q psy13961 151 GVNKMDSTE 159 (459)
Q Consensus 151 viNK~D~~~ 159 (459)
|+||+|+.+
T Consensus 157 v~nK~Dl~~ 165 (262)
T 3def_A 157 VLTHAQFSP 165 (262)
T ss_dssp EEECTTCCC
T ss_pred EEeCcccCC
Confidence 999999964
No 169
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.61 E-value=9.6e-15 Score=138.55 Aligned_cols=118 Identities=17% Similarity=0.106 Sum_probs=76.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
...++|+++|++|+|||||+++|+...-... . ...+.|.+.....++..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~------------------------~------~~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI------------------------S------PFQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------C------SSSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc------------------------c------CCCCcceeeEEEEEeeCC
Confidence 3578999999999999999999974321100 0 012334444445567788
Q ss_pred EEEEEEeCCCccchH-------hHHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-cC----CceEEE
Q psy13961 85 FYVTIIDAPGHRDFI-------KNMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-LG----VKQLIV 150 (459)
Q Consensus 85 ~~~~liDtpG~~~~~-------~~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~~----ip~iiv 150 (459)
..++||||||+.+|. ..+.+. ...+|++++|+|.+...+. ....+.+..+.. .+ .| +++
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~------~~~~~~~~~l~~~~~~~~~~~-iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD------NLDKLVAKAITDSFGKGIWNK-AIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCC------HHHHHHHHHHHHHHCGGGGGG-EEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCC------HHHHHHHHHHHHHhCcccccC-EEE
Confidence 899999999997763 122222 2369999999998643221 123344444432 24 46 899
Q ss_pred EEEccCCCC
Q psy13961 151 GVNKMDSTE 159 (459)
Q Consensus 151 viNK~D~~~ 159 (459)
|+||+|+.+
T Consensus 160 V~nK~Dl~~ 168 (270)
T 1h65_A 160 ALTHAQFSP 168 (270)
T ss_dssp EEECCSCCC
T ss_pred EEECcccCC
Confidence 999999975
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=7.4e-15 Score=145.03 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=91.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|++|+|||||+++|+..... .. ...+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------~~------~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------IA------SYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------EE------CCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------cC------CCCCeeeceeEEEEEecC
Confidence 34579999999999999999999632100 00 011334444445555667
Q ss_pred EEEEEEeCCCccchH--------hHHHHhh-cccCEEEEEEECCCCceeccccCCCchHHHHHHHHH-c-CCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDFI--------KNMITGT-SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT-L-GVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~~--------~~~~~~~-~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~-~-~ip~iivviN 153 (459)
..+.++||||+.++. ......+ ..+|.+++|+|++... ++... ...+.+..+.. . +.| +++|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~-~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLE-EQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHH-HHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHH-HHHHHHHHHHHhcCCCC-EEEEEE
Confidence 889999999986542 1222233 4699999999987641 11100 11223333322 3 788 899999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
|+|+... ..++ ++..+++..+ .+++++||++|+|+
T Consensus 289 K~Dl~~~----~~~~----~~~~~~~~~~-----~~~~~iSA~~g~gi 323 (357)
T 2e87_A 289 KIDVADE----ENIK----RLEKFVKEKG-----LNPIKISALKGTGI 323 (357)
T ss_dssp CTTTCCH----HHHH----HHHHHHHHTT-----CCCEECBTTTTBTH
T ss_pred CcccCCh----HHHH----HHHHHHHhcC-----CCeEEEeCCCCcCH
Confidence 9999762 2222 2333333322 46899999999999
No 171
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=7.9e-15 Score=133.79 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=87.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
....+|+++|.+|+|||||+++|+.....+.. + .+ ..|.+. ....+..++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~------------------------~-~~---~~g~d~--~~~~i~~~~ 84 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS------------------------D-CE---VLGEDT--YERTLMVDG 84 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC------------------------C-------CCTTE--EEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC------------------------c-CC---ccceee--EEEEEEECC
Confidence 34689999999999999999999732211110 0 00 011111 112233333
Q ss_pred --EEEEEEeCCCccch-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 85 --FYVTIIDAPGHRDF-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 --~~~~liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
..+.++||+|.+.. ........+.+|++|+|+|.++.. .|. ...+.+..+.. .++| +++|.||+|+
T Consensus 85 ~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~---sf~---~~~~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 85 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFE---KASELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp EEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH---HHH---HHHHHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred eeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH---HHH---HHHHHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 45789999999873 222333456799999999997641 121 22223333332 3678 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+. .+...+ +...+....+ ++++++||++|+|+
T Consensus 158 ~~~--r~v~~~----e~~~~a~~~~-----~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 158 VRC--REVSVS----EGRACAVVFD-----CKFIETSAAVQHNV 190 (211)
T ss_dssp GGG--CCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSH
T ss_pred hcC--ceEeHH----HHHHHHHHcC-----CEEEEEeCCCCCCH
Confidence 641 011111 1112222223 47899999999999
No 172
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.57 E-value=8.3e-15 Score=140.70 Aligned_cols=155 Identities=13% Similarity=0.207 Sum_probs=96.7
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEEEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVT 88 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~~~ 88 (459)
+|+++|..++|||||+.++.... .. ......+.|+...+..+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~----------------------------~~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QP----------------------------LDTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CS----------------------------GGGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CC----------------------------CccceecCeeeeeeEEEc-cEEEEE
Confidence 58999999999999998774211 00 001113445555544443 346899
Q ss_pred EEeCCCccchHh---HHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH----HHHH--HcCCceEEEEEEccCCCC
Q psy13961 89 IIDAPGHRDFIK---NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA----LLAF--TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 89 liDtpG~~~~~~---~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~----~~~~--~~~ip~iivviNK~D~~~ 159 (459)
||||||+++|.. .+..+++.++++|+|+|+++. +. ...+.+ ..+. .-++| ++++.||+|+.+
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~-------~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~ 120 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YI-------NAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLS 120 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TT-------HHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSC
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HH-------HHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCc
Confidence 999999999964 346778999999999999875 32 333333 2222 23677 888899999986
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccccc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~ 204 (459)
.+..++...++..+..+.+.+.++..-+++|+.+||++ .|+.++
T Consensus 121 ~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eA 164 (331)
T 3r7w_B 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEA 164 (331)
T ss_dssp SHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHH
T ss_pred hhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHH
Confidence 31111112334443333333333222357899999997 587543
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.56 E-value=5.4e-15 Score=153.89 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=92.1
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEee------e
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA------L 77 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~------~ 77 (459)
.....+|+++|.+|+|||||+++|+...- .. ......|.++... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~---------------------------~~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DP---------------------------KESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------CCCCccceEEEEeccccccc
Confidence 34578999999999999999999974210 00 0000111211110 0
Q ss_pred eEE--eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC--CceEEEEEE
Q psy13961 78 WKF--ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG--VKQLIVGVN 153 (459)
Q Consensus 78 ~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~--ip~iivviN 153 (459)
..+ +.....+.++||||++.|.......++.+|++|+|+|++.. + .....+..+...+ .| +++|+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~-------~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--S-------NKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--G-------GHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--h-------hHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12357899999999999988777778889999999999753 1 4555566666654 88 889999
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 154 KMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 154 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
|+|+.+.. +.. .++++..+...+. +++++||++|.|+.
T Consensus 159 K~Dl~~~~--~v~----~~~~~~~~~~~~~-----~~~~vSA~~g~gi~ 196 (535)
T 3dpu_A 159 KIDENPSY--NIE----QKKINERFPAIEN-----RFHRISCKNGDGVE 196 (535)
T ss_dssp CTTTCTTC--CCC----HHHHHHHCGGGTT-----CEEECCC-----CT
T ss_pred CCCccccc--ccC----HHHHHHHHHhcCC-----ceEEEecCcccCHH
Confidence 99997521 111 1233444444443 68999999999984
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.56 E-value=1.7e-14 Score=138.73 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=65.0
Q ss_pred CEEEEEEeCCCcc-------------chHhHHHHhhcccCEEE-EEEECCCCceeccccCCCchH-HHHHHHHHcCCceE
Q psy13961 84 KFYVTIIDAPGHR-------------DFIKNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTR-EHALLAFTLGVKQL 148 (459)
Q Consensus 84 ~~~~~liDtpG~~-------------~~~~~~~~~~~~aD~~i-lVvda~~g~~~~~~~~~~qt~-e~~~~~~~~~ip~i 148 (459)
...+.||||||+. .+...+..++..+|.+| +|+|++.+... +.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-------~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN-------SDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGG-------CHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhh-------hHHHHHHHHhCCCCCe-E
Confidence 4689999999974 34445566777888776 68999865321 332 344444456788 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
++|+||+|+.+... . ..+.++..+..+ .....+++++||++|.|+.+
T Consensus 196 i~V~NK~Dl~~~~~--~----~~~~~~~~~~~~--~~~~~~v~~~SA~~~~gi~~ 242 (299)
T 2aka_B 196 IGVITKLDLMDEGT--D----ARDVLENKLLPL--RRGYIGVVNRSQKDIDGKKD 242 (299)
T ss_dssp EEEEECGGGSCTTC--C----CHHHHTTCSSCC--TTCEEECCCCCCBCTTSCBC
T ss_pred EEEEEccccCCCCc--h----HHHHHhCCcCcC--CCCcEEEECCChhhcccccc
Confidence 99999999986311 0 112222211111 11235789999999999854
No 175
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.55 E-value=2.2e-14 Score=128.80 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=84.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
++..+|+++|.+|+|||||+++|+.....+.. + .+ ..|.+. ....+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~------------------------~-~~---~~~~~~--~~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS------------------------D-XE---VLGEDT--YERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------------------G---GGCTTE--EEEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCc------------------------c-cc---ccceeE--EEEEEEECC
Confidence 45689999999999999999999753222110 0 00 011111 112233333
Q ss_pred --EEEEEEeCCCccch-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 85 --FYVTIIDAPGHRDF-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 85 --~~~~liDtpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
..+.++||+|.+.. .......++.+|++++|+|.++.. .+. ...+.+..+.. .++| +++|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA---SFE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH---HHH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 45678999998662 222233456799999999997641 121 22222232322 3678 8999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 158 TEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 158 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.... ....+ +...+....+ ++++++||++|.|+
T Consensus 127 ~~~r--~v~~~----~~~~~a~~~~-----~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 127 VRXR--EVSVS----EGRAXAVVFD-----XKFIETSAAVQHNV 159 (192)
T ss_dssp GGGC--CSCHH----HHHHHHHHTT-----CEEEECBTTTTBSH
T ss_pred hccc--cccHH----HHHHHHHHhC-----CceEEeccccCCCH
Confidence 6410 01111 1111222222 46899999999999
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=1e-13 Score=125.84 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=88.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
+..+|+++|++|||||||+++|+.... .. ......|.|....... ..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~----------------------------~~~~~~G~~~~~~~~~--~~~- 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LA----------------------------RTSKTPGRTQLINLFE--VAD- 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEE--EET-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cc----------------------------cccCCCccceeeEEEE--ecC-
Confidence 456899999999999999999963210 00 0001124443322222 222
Q ss_pred EEEEEeCCCccc----------hHhHHHHh---hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEE
Q psy13961 86 YVTIIDAPGHRD----------FIKNMITG---TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 86 ~~~liDtpG~~~----------~~~~~~~~---~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivvi 152 (459)
.+.++||||+.. |...+... ...+|.+++++|+..+... ...+....+...++| ++++.
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-------~~~~~~~~~~~~~~~-~~~v~ 144 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD-------LDQQMIEWAVDSNIA-VLVLL 144 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-------HHHHHHHHHHHTTCC-EEEEE
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch-------hHHHHHHHHHHcCCC-eEEEE
Confidence 577999999843 22222222 2568999999999865211 233344556678899 67778
Q ss_pred EccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
||+|+.+. ...+...+.+..++...+. .+.++|+||+++.|+
T Consensus 145 nK~D~~s~----~~~~~~~~~~~~~~~~~~~---~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 145 TKADKLAS----GARKAQLNMVREAVLAFNG---DVQVETFSSLKKQGV 186 (210)
T ss_dssp ECGGGSCH----HHHHHHHHHHHHHHGGGCS---CEEEEECBTTTTBSH
T ss_pred ecccCCCc----hhHHHHHHHHHHHHHhcCC---CCceEEEeecCCCCH
Confidence 99998751 1112223444445544331 357899999999998
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.53 E-value=7e-14 Score=126.12 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=91.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
..++|+++|+.|+|||||+++|+...-.. +....++.+.....+..++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCCSCEEEEEEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceeEEEEEEEECCE
Confidence 45899999999999999999997432110 0001111222223344444
Q ss_pred -EEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q psy13961 85 -FYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 85 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~ 160 (459)
..+.+|||||+++|...+...+..+|++++|+|...... +. .....+..+.. .+.| +++++||+|+.+.
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---YE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 467889999999987666666778999999999976421 11 22223333322 3566 8899999999641
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+...+ +.+.+....+ +.++.+||+++.|+
T Consensus 126 --~~~~~~----~a~~l~~~~~-----~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 126 --RAVPTD----EARAFAEKNN-----LSFIETSALDSTNV 155 (199)
T ss_dssp --CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTH
T ss_pred --cCcCHH----HHHHHHHHcC-----CeEEEEeCCCCCCH
Confidence 111111 2233333333 46888999999998
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.51 E-value=2.5e-14 Score=138.65 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=50.6
Q ss_pred CCEEEEEEeCCCccc-------------hHhHHHHhhcccCEEEEEEECC-CCceeccccCCCchHHHHHHHHHcCCceE
Q psy13961 83 SKFYVTIIDAPGHRD-------------FIKNMITGTSQADCAVLIVAAG-TGEFEAGISKNGQTREHALLAFTLGVKQL 148 (459)
Q Consensus 83 ~~~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvda~-~g~~~~~~~~~~qt~e~~~~~~~~~ip~i 148 (459)
....+.||||||+.+ +...+..++..+|++++|+|+. .+... .+....+..+...+.| +
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~------~~~~~i~~~~~~~~~~-~ 201 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN------SDALQLAKEVDPEGKR-T 201 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT------CSHHHHHHHHCSSCSS-E
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhh------hHHHHHHHHhCCCCCc-E
Confidence 457899999999864 5556667788999999999974 33111 1223455555556888 8
Q ss_pred EEEEEccCCCCC
Q psy13961 149 IVGVNKMDSTEP 160 (459)
Q Consensus 149 ivviNK~D~~~~ 160 (459)
++|+||+|+.+.
T Consensus 202 i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 202 IGVITKLDLMDK 213 (315)
T ss_dssp EEEEECTTSSCS
T ss_pred EEEEcCcccCCc
Confidence 888999999863
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.3e-14 Score=128.34 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=71.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 84 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 84 (459)
.+..+|+++|+.|+|||||+++|+...-... .. ....+++. .+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-----------------------~~-----~~~~~~~~-------~~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------------------VV-----SQEPLSAA-------DYDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------------------CCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------------cc-----cCCCceee-------eecC
Confidence 3567999999999999999999975321000 00 00011111 1145
Q ss_pred EEEEEEeCCCccchHhHHHHhhcc----cCEEEEEEECC-CCceeccccCCCchHHHHHHHHH-------cCCceEEEEE
Q psy13961 85 FYVTIIDAPGHRDFIKNMITGTSQ----ADCAVLIVAAG-TGEFEAGISKNGQTREHALLAFT-------LGVKQLIVGV 152 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~~~~~~~~----aD~~ilVvda~-~g~~~~~~~~~~qt~e~~~~~~~-------~~ip~iivvi 152 (459)
..+.||||||+.+|...+...+.. +|++|+|+|++ .. ..+. ...+++..+.. .++| +++|+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KKLT---TTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH---HHHH---HHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc---hhHH---HHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 678899999999886666665554 89999999997 32 1111 22222222211 3788 89999
Q ss_pred EccCCCCC
Q psy13961 153 NKMDSTEP 160 (459)
Q Consensus 153 NK~D~~~~ 160 (459)
||+|+.+.
T Consensus 164 nK~Dl~~~ 171 (193)
T 2ged_A 164 NKSELFTA 171 (193)
T ss_dssp ECTTSTTC
T ss_pred EchHhcCC
Confidence 99999864
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=136.26 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=72.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK- 84 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~- 84 (459)
...+|+++|++|+|||||+++|+.. +..... . ......+...++++......++..+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~--------------------~-~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLT-DLYPER--------------------V-IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCC--------------------c-ccCCCcccCCceeEEEEEEEeecCCc
Confidence 3578999999999999999998532 111100 0 0000111112333332222233333
Q ss_pred -EEEEEEeCCCcc-------chHhHHH-------Hhhcc-------------cCEEEEEEECCCCceeccccCCCchH-H
Q psy13961 85 -FYVTIIDAPGHR-------DFIKNMI-------TGTSQ-------------ADCAVLIVAAGTGEFEAGISKNGQTR-E 135 (459)
Q Consensus 85 -~~~~liDtpG~~-------~~~~~~~-------~~~~~-------------aD~~ilVvda~~g~~~~~~~~~~qt~-e 135 (459)
..+++|||||+. .|...+. .++.. +|+++++|+.....+. ... +
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~-------~~d~~ 166 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK-------PLDVA 166 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCC-------HHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcc-------hhHHH
Confidence 379999999993 3322221 22222 3568888876332221 222 2
Q ss_pred HHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc
Q psy13961 136 HALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN 200 (459)
Q Consensus 136 ~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~ 200 (459)
.+..+ ..++| +|+|+||+|+.. ........+++..+++..+ ++++++||++|+|
T Consensus 167 ~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 167 FMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE 220 (361)
T ss_dssp HHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC------CCSCCCC------
T ss_pred HHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc
Confidence 22222 35678 899999999976 2333444456666655444 4789999999876
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.47 E-value=3.3e-13 Score=120.93 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=91.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCE
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKF 85 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 85 (459)
...+|+++|+.|||||||+++|+....... ....++.+.....+..++.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-------------------------------SKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCS-------------------------------CCCCCSEEEEEEEEEETTE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------------------CCCccceEEEEEEEEECCE
Confidence 357999999999999999999974321100 0011222333334444554
Q ss_pred --EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCCC
Q psy13961 86 --YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 86 --~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~~ 160 (459)
.+.++||||+++|...+...+..+|++++|+|...... +. .....+..+.. .+.| +++++||+|+.+.
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---YE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHL 149 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 45679999999987777777788999999999875411 10 22222222222 2456 8889999998641
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+...+ ..+.+.... .+.++.+||+++.|+
T Consensus 150 --~~~~~~----~a~~l~~~~-----~~~~ld~Sald~~~v 179 (191)
T 1oix_A 150 --RAVPTD----EARAFAEKN-----GLSFIETSALDSTNV 179 (191)
T ss_dssp --CCSCHH----HHHHHHHHT-----TCEEEECCTTTCTTH
T ss_pred --cccCHH----HHHHHHHHc-----CCEEEEEeCCCCCCH
Confidence 111111 223333332 246888999999998
No 182
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.5e-14 Score=133.49 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=46.7
Q ss_pred ccCEEEEEEECCCCceeccccCCCchHHHHHHHH----HcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 108 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAF----TLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 108 ~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
.+|++|+|+|+++.. ...+. ....++..+. ..++| +++|.||+|+.+ +... ++...+.+..
T Consensus 162 ~ad~vilV~D~t~~~-~~s~~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~----~~~v----~~~~~~~~~~-- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRNFD---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV----ERYI----RDAHTFALSK-- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHH---HHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC----HHHH----HHHHHHHHTS--
T ss_pred cCCEEEEEEECCCCc-hhhHH---HHHHHHHHHHHHhccCCCC-EEEEEEcccccc----cHHH----HHHHHHHHhc--
Confidence 699999999997630 00111 2223333322 24788 899999999965 1112 3344443321
Q ss_pred CCceeeEeecCCCCCCcc
Q psy13961 184 NPATVAFVPISGWHGDNM 201 (459)
Q Consensus 184 ~~~~~~~i~iSa~~g~~i 201 (459)
..++++++||++|.|+
T Consensus 227 --~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 227 --KNLQVVETSARSNVNV 242 (255)
T ss_dssp --SSCCEEECBTTTTBSH
T ss_pred --CCCeEEEEECCCCCCH
Confidence 1357899999999998
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.46 E-value=6.9e-14 Score=149.22 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccc---hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH-HHHHcCCceEEEEEEccCCCC
Q psy13961 85 FYVTIIDAPGHRD---FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL-LAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 85 ~~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~-~~~~~~ip~iivviNK~D~~~ 159 (459)
..+.||||||+.+ ....+..++..+|++|+|+|++.+... ...+.+. .+...+.| +++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~-------~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTL-------GERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCH-------HHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccch-------hHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 3689999999765 344556677889999999999876321 3333332 33445788 899999999864
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=1e-13 Score=138.15 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=23.9
Q ss_pred EEEEEEeCCCccchH-------hHHHHhhcccCEEEEEEECCCC
Q psy13961 85 FYVTIIDAPGHRDFI-------KNMITGTSQADCAVLIVAAGTG 121 (459)
Q Consensus 85 ~~~~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~g 121 (459)
..+.||||||+.+.. ......++.+|++++|+|++.+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 579999999986531 1223456889999999999865
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.44 E-value=5.5e-14 Score=138.58 Aligned_cols=102 Identities=26% Similarity=0.282 Sum_probs=65.8
Q ss_pred eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCC
Q psy13961 81 ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160 (459)
Q Consensus 81 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~ 160 (459)
+..++.+.||||||...- ....+..+|++++|+|+..+.....+ . ...+++| +++|+||+|+.+
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l------~-----~~~~~~p-~ivVlNK~Dl~~- 231 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGI------K-----KGVLELA-DIVVVNKADGEH- 231 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTC------C-----TTSGGGC-SEEEEECCCGGG-
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHH------H-----HhHhhcC-CEEEEECCCCcC-
Confidence 345789999999996542 22334789999999998765211111 0 1113457 688899999975
Q ss_pred CCcHHHHHHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCcc
Q psy13961 161 PYSEARFEEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNM 201 (459)
Q Consensus 161 ~~~~~~~~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i 201 (459)
....+...+++...+..+..... ..+++++||++|+|+
T Consensus 232 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi 271 (355)
T 3p32_A 232 ---HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271 (355)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH
T ss_pred ---hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCH
Confidence 23445555666655544431111 357999999999998
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=1.9e-13 Score=133.93 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=63.1
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
+.++.++||||||+.++...+ ...+|++++|+|+..+.. + +.... ...++| .++|+||+|+.+
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~---~----~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD---L----QGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH---H----HHHHH----hhhccc-CEEEEECCCCCC--
Confidence 567899999999988765443 478999999999976521 1 11111 113567 577899999975
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcCCc--eeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYNPA--TVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~~~--~~~~i~iSa~~g~~i 201 (459)
...+....++++..+..++.... ..+++++||++|+|+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 13444444555554443321001 246899999999998
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=128.21 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=56.6
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..+..+.|+||||..... ......+|++++|+|+..+... + .+.. ..+..| .++|+||+|+.+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~-------~---~i~~-~il~~~-~ivVlNK~Dl~~-- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDEL-------Q---GIKR-GIIEMA-DLVAVTKSDGDL-- 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGGG--
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhH-------H---HhHH-HHHhcC-CEEEEeeecCCC--
Confidence 456789999999974321 2234679999999999765211 1 1111 225678 577789999964
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcC--CceeeEeecCCCCCCcc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYN--PATVAFVPISGWHGDNM 201 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~--~~~~~~i~iSa~~g~~i 201 (459)
.........++...++..... ....+++++||++|+|+
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 122222333443333221100 01247899999999998
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.9e-12 Score=134.34 Aligned_cols=79 Identities=20% Similarity=0.142 Sum_probs=58.4
Q ss_pred EEEEEEeCCCccc-----------hHhHHHHhhcccCEEEEEEECCC-CceeccccCCCchHHHHHHHHHcCCceEEEEE
Q psy13961 85 FYVTIIDAPGHRD-----------FIKNMITGTSQADCAVLIVAAGT-GEFEAGISKNGQTREHALLAFTLGVKQLIVGV 152 (459)
Q Consensus 85 ~~~~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvda~~-g~~~~~~~~~~qt~e~~~~~~~~~ip~iivvi 152 (459)
..++||||||+.+ |...+...+..+|++|+|+|++. +..+ +..+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~-------~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD-------EFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH-------HHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH-------HHHHHHHHHHhcCCC-EEEEE
Confidence 3689999999976 66777778889999999999976 2222 556666666666788 89999
Q ss_pred EccCCCCCCCcHHHHHHHHHHHH
Q psy13961 153 NKMDSTEPPYSEARFEEIKKEVS 175 (459)
Q Consensus 153 NK~D~~~~~~~~~~~~~i~~~l~ 175 (459)
||+|+.+ +..+.++...+.
T Consensus 226 NK~Dl~~----~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE----TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC----HHHHHHHHHHHH
T ss_pred ECCCccC----HHHHHHHHHHhh
Confidence 9999986 244444444443
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.36 E-value=3e-12 Score=127.83 Aligned_cols=145 Identities=19% Similarity=0.234 Sum_probs=84.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-EEE
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-FYV 87 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~~ 87 (459)
.|+++|++|||||||+++|+.....+ .+. ...|.......+...+ ..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i-------------------------~~~------~ftTl~p~~G~V~~~~~~~~ 207 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKI-------------------------APY------PFTTLSPNLGVVEVSEEERF 207 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEE-------------------------CCC------TTCSSCCEEEEEECSSSCEE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccc-------------------------cCc------ccceecceeeEEEecCcceE
Confidence 58999999999999999996321111 010 0112222223344443 789
Q ss_pred EEEeCCCccch-------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccCCCC
Q psy13961 88 TIIDAPGHRDF-------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 88 ~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D~~~ 159 (459)
+++|+||+.+. .....+.+..+|.+++|+|++...++ .++. -.++...++. ....| .++++||+|+..
T Consensus 208 ~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls~--g~~el~~la~aL~~~P-~ILVlNKlDl~~ 283 (416)
T 1udx_A 208 TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLET--LRKEVGAYDPALLRRP-SLVALNKVDLLE 283 (416)
T ss_dssp EEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHHH--HHHHHHHHCHHHHHSC-EEEEEECCTTSC
T ss_pred EEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHHH--HHHHHHHHhHHhhcCC-EEEEEECCChhh
Confidence 99999998532 12334455679999999999611111 0000 0011111222 24678 567779999975
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 160 PPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 160 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
. +..+.+...++..+ .+++++||++++|+
T Consensus 284 -----~---~~~~~l~~~l~~~g-----~~vi~iSA~~g~gi 312 (416)
T 1udx_A 284 -----E---EAVKALADALAREG-----LAVLPVSALTGAGL 312 (416)
T ss_dssp -----H---HHHHHHHHHHHTTT-----SCEEECCTTTCTTH
T ss_pred -----H---HHHHHHHHHHHhcC-----CeEEEEECCCccCH
Confidence 1 22233444443323 46899999999998
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=1.3e-12 Score=128.65 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=59.4
Q ss_pred CEEEEEEeCCCccc-------------hHhHHHHhhccc-CEEEEEEECCCCceeccccCCCchH-HHHHHHHHcCCceE
Q psy13961 84 KFYVTIIDAPGHRD-------------FIKNMITGTSQA-DCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTLGVKQL 148 (459)
Q Consensus 84 ~~~~~liDtpG~~~-------------~~~~~~~~~~~a-D~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~~ip~i 148 (459)
...++||||||..+ +...+..++..+ +++++|+|++.+... +.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~-------~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN-------SDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGG-------CHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccch-------hHHHHHHHHhCcCCCc-e
Confidence 46899999999632 333444555554 566667777654211 222 234444445788 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
++|+||+|+.+... ... +.+.... ........+++++||++|.|+.+
T Consensus 201 i~V~NK~Dl~~~~~---~~~---~~~~~~~--~~l~~~~~~v~~~SA~~~~~i~~ 247 (353)
T 2x2e_A 201 IGVITKLDLMDEGT---DAR---DVLENKL--LPLRRGYIGVVNRSQKDIDGKKD 247 (353)
T ss_dssp EEEEECGGGSCTTC---CCH---HHHTTCS--SCCTTCEEECCCCCHHHHHTTCC
T ss_pred EEEeccccccCcch---hHH---HHHhCCc--ccccCCceEEEeCCccccccccc
Confidence 88999999986311 011 1111111 11111224688999999988754
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.31 E-value=5.1e-12 Score=134.05 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=65.0
Q ss_pred CEEEEEEeCCCccc-------------hHhHHHHhh-cccCEEEEEEECCCCceeccccCCCchH-HHHHHHHHcCCceE
Q psy13961 84 KFYVTIIDAPGHRD-------------FIKNMITGT-SQADCAVLIVAAGTGEFEAGISKNGQTR-EHALLAFTLGVKQL 148 (459)
Q Consensus 84 ~~~~~liDtpG~~~-------------~~~~~~~~~-~~aD~~ilVvda~~g~~~~~~~~~~qt~-e~~~~~~~~~ip~i 148 (459)
...++|+||||... +...+..++ ..+|++++|+|++.+... +.. +.+..+...+.| +
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~-------~d~l~ll~~L~~~g~p-v 220 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN-------SDALKIAKEVDPQGQR-T 220 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSS-------CHHHHHHHHHCTTCSS-E
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcch-------hHHHHHHHHHHhcCCC-E
Confidence 45799999999643 222333344 468999999999876322 333 455566667888 8
Q ss_pred EEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 149 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
|+|+||+|+.+.... ...+.. ... +.+.....+++++||++|.|+.+
T Consensus 221 IlVlNKiDlv~~~~~---~~~il~--~~~---~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 221 IGVITKLDLMDEGTD---ARDVLE--NKL---LPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp EEEEECTTSSCTTCC---SHHHHT--TCS---SCCSSCEEECCCCCCEESSSSEE
T ss_pred EEEEeCcccCCcchh---hHHHHH--HHh---hhhhccCCceEEecccccccchh
Confidence 899999999863211 111111 011 11111235789999999999755
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.30 E-value=2.2e-12 Score=118.16 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=84.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeec-cCc----hh-HHhcCceE-Eeee-
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL-DKL----KA-ERERGITI-DIAL- 77 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~-d~~----~~-e~~~g~Ti-~~~~- 77 (459)
...+|+++|++|+|||||+++|+....... +.+.+. |.. .. .+..|.++ .+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~-------------------~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~ 89 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEV-------------------KIGAMLGDVVSKADYERVRRFGIKAEAISTG 89 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTS-------------------CEEEEECSCCCHHHHHHHHTTTCEEEECCCT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCC-------------------eEEEEecCCCCchhHHHHHhCCCcEEEecCC
Confidence 356899999999999999999986532110 000000 000 00 01112221 1110
Q ss_pred --eEE----------eeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCC
Q psy13961 78 --WKF----------ETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 145 (459)
Q Consensus 78 --~~~----------~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~i 145 (459)
..+ .+.+..+.+|||||+..--. .....++.+++|+|+..+. .. .+......+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~---------~~--~~~~~~~~~~ 155 (221)
T 2wsm_A 90 KECHLDAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD---------DV--VEKHPEIFRV 155 (221)
T ss_dssp TCSSCCHHHHHTTGGGGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT---------TH--HHHCHHHHHT
T ss_pred ceeecccHHHHHHHHhcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc---------hh--hhhhhhhhhc
Confidence 111 33457889999999521100 0012468899999997651 11 1122234578
Q ss_pred ceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 146 KQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 146 p~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
| +++|+||+|+.+. ....++++.+.++ .++ ...+++++||++|+|+
T Consensus 156 ~-~iiv~NK~Dl~~~--~~~~~~~~~~~~~----~~~---~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 156 A-DLIVINKVALAEA--VGADVEKMKADAK----LIN---PRAKIIEMDLKTGKGF 201 (221)
T ss_dssp C-SEEEEECGGGHHH--HTCCHHHHHHHHH----HHC---TTSEEEECBTTTTBTH
T ss_pred C-CEEEEecccCCcc--hhhHHHHHHHHHH----HhC---CCCeEEEeecCCCCCH
Confidence 8 6778999998641 0012344444333 222 2357899999999998
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.28 E-value=3.7e-12 Score=125.83 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=63.7
Q ss_pred CEEEEEEeCCCccch-------------HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEE
Q psy13961 84 KFYVTIIDAPGHRDF-------------IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 150 (459)
Q Consensus 84 ~~~~~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iiv 150 (459)
...++||||||+.++ ...+..++..+|++|+|+|+...... . ....+.+..+...+.| +++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~---~--~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA---T--SDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG---G--CHHHHHHHHSCTTCTT-EEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC---C--HHHHHHHHHhcccCCC-EEE
Confidence 457999999998876 55566678899999999987542110 0 1222333333345678 888
Q ss_pred EEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 151 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
|+||+|+.+... . ..+.+...... ...+|+++|+.++.++.+
T Consensus 209 V~nK~Dl~~~~~--~----~~~~~~~~~~~-----~~~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 209 VLTKIDLMDKGT--D----AVEILEGRSFK-----LKYPWVGVVNRSQADINK 250 (360)
T ss_dssp EEECGGGCCTTC--C----SHHHHTTSSSC-----CSSCCEEECCCCHHHHHT
T ss_pred EEeCCccCCCcc--c----HHHHHcCcccc-----ccCCeEEEEECChHHhcc
Confidence 999999986321 1 11222222111 234688999998877654
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.25 E-value=6.8e-12 Score=118.04 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=43.0
Q ss_pred EEEEEEeCCCccchHhH------HHHhhcccCEEEEEEECCCCceeccccCCCchHH-H----HHHHHHcCCceEEEEEE
Q psy13961 85 FYVTIIDAPGHRDFIKN------MITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE-H----ALLAFTLGVKQLIVGVN 153 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~~------~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e-~----~~~~~~~~ip~iivviN 153 (459)
+.+.||||||+.++... +...+.. +++++|+|+...... .... . .......++| +++|+|
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~-------~~~~~~~~~~~~~~~~~~~p-~~iv~N 179 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKP-------NDYCFVRFFALLIDLRLGAT-TIPALN 179 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSH-------HHHHHHHHHHHHHHHHHTSC-EEEEEC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCH-------HHHHHHHHHHHHHhcccCCC-eEEEEe
Confidence 57999999999876432 3345566 899999998644211 1111 1 1223345788 788899
Q ss_pred ccCCCC
Q psy13961 154 KMDSTE 159 (459)
Q Consensus 154 K~D~~~ 159 (459)
|+|+..
T Consensus 180 K~D~~~ 185 (262)
T 1yrb_A 180 KVDLLS 185 (262)
T ss_dssp CGGGCC
T ss_pred cccccc
Confidence 999975
No 195
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.21 E-value=1.3e-10 Score=92.20 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=69.7
Q ss_pred CCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC-eEEEEEEEEeccccceeEcCCCeEEEEEccCcccCcc
Q psy13961 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN-LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELR 321 (459)
Q Consensus 243 ~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~-~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~ 321 (459)
-.|..+.|..++..-+ |+++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.|||+|++++++... +++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 3566777777555444 8899999999999999999 887 789999999999999999999999999999776 899
Q ss_pred eeEEEc
Q psy13961 322 RGFVAG 327 (459)
Q Consensus 322 ~G~vl~ 327 (459)
+||+|-
T Consensus 107 ~GdVLy 112 (116)
T 1xe1_A 107 KGDVLE 112 (116)
T ss_dssp TTCEEE
T ss_pred CCcEEE
Confidence 999985
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=3.9e-10 Score=112.64 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=73.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC--C
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS--K 84 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~ 84 (459)
..+|+++|+.|+|||||+++|+....... |.+... .+. ...+........++.. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~--------------~~~~~~----~~~-----~~t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSP--------------EYPGPS----HRI-----KKTVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCC--------------CCCSCC--------------CCEEEEEECC------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCC--------------CCCCcc----cCC-----ccceeeeeEEEEEecCCcc
Confidence 46899999999999999999974321100 000000 000 0011111111111211 2
Q ss_pred EEEEEEeCCCccchHh------HHH--------H-----------hhccc--CEEEEEEECC-CCceeccccCCCchHHH
Q psy13961 85 FYVTIIDAPGHRDFIK------NMI--------T-----------GTSQA--DCAVLIVAAG-TGEFEAGISKNGQTREH 136 (459)
Q Consensus 85 ~~~~liDtpG~~~~~~------~~~--------~-----------~~~~a--D~~ilVvda~-~g~~~~~~~~~~qt~e~ 136 (459)
..++++||||+.++.. .+. . .+..+ |+++++++.+ .+ +. +...+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~-----L~--~~d~~~ 160 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-----LK--PLDIEF 160 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS-----CC--HHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC-----CC--HHHHHH
Confidence 4789999999876532 110 1 12233 4455555543 23 21 133344
Q ss_pred HHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 137 ALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 137 ~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+..+. .+++ +|+|+||+|+.. .......++++...+...++ +++.+|+.+++++
T Consensus 161 lk~L~-~~v~-iIlVinK~Dll~----~~ev~~~k~~i~~~~~~~~i-----~~~~~sa~~~~~v 214 (418)
T 2qag_C 161 MKRLH-EKVN-IIPLIAKADTLT----PEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEE 214 (418)
T ss_dssp HHHHT-TTSE-EEEEEESTTSSC----HHHHHHHHHHHHHHHHHHTC-----CCCCCC-------
T ss_pred HHHHh-ccCc-EEEEEEcccCcc----HHHHHHHHHHHHHHHHHcCC-----eEEeCCCCCCcCH
Confidence 44443 3777 899999999975 24455555667766666554 5788999988877
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.10 E-value=6.3e-11 Score=116.45 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=78.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.||+|||||+|+|+.....+ ....+.|++.....+.+.+.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETTEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCCcE
Confidence 3589999999999999999997432111 112366777777778889999
Q ss_pred EEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHH-HHHHH-----cCCceEEEEEE
Q psy13961 87 VTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA-LLAFT-----LGVKQLIVGVN 153 (459)
Q Consensus 87 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~-~~~~~-----~~ip~iivviN 153 (459)
+.|+||||..+ .....+..++.+|++++|+|++++. ...+.+ ..+.. ...| .++++|
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~---------~~~~~i~~EL~~~~~~l~~k~-~~i~~n 190 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL---------HHKQIIEKELEGVGIRLNKTP-PDILIK 190 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH---------HHHHHHHHHHHHTTEEETCCC-CCEEEE
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH---------HHHHHHHHHHHHhhHhhccCC-hhhhhh
Confidence 99999999743 2345667788999999999998642 111211 12222 2346 567789
Q ss_pred ccCCC
Q psy13961 154 KMDST 158 (459)
Q Consensus 154 K~D~~ 158 (459)
|+|..
T Consensus 191 K~d~~ 195 (376)
T 4a9a_A 191 KKEKG 195 (376)
T ss_dssp ECSSS
T ss_pred Hhhhh
Confidence 99973
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=4.3e-10 Score=109.87 Aligned_cols=82 Identities=15% Similarity=0.046 Sum_probs=54.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC---
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK--- 84 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--- 84 (459)
.+|+++|.+|+|||||+++|+.....+. ...+.|++.....+...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~-------------------------------~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA-------------------------------NYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc-------------------------------CCCCceECceEEEEecCCccc
Confidence 5899999999999999999975321000 001223333222222222
Q ss_pred --------------EEEEEEeCCCccchHh-------HHHHhhcccCEEEEEEECCC
Q psy13961 85 --------------FYVTIIDAPGHRDFIK-------NMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 85 --------------~~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~ 120 (459)
..+.|+||||+.++.. .....++.+|++++|+|+++
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999987642 24456789999999999976
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.06 E-value=7.2e-10 Score=106.42 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 144 GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 144 ~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+++ +++|+||.|+... .......+++.++++..+ ++++++||++| |+
T Consensus 155 ~~~-iilV~~K~Dl~~~----~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 155 KVN-IVPVIAKADTLTL----KERERLKKRILDEIEEHN-----IKIYHLPDAES-DE 201 (301)
T ss_dssp TSC-EEEEECCGGGSCH----HHHHHHHHHHHHHHHHTT-----CCCCCCC-------
T ss_pred cCC-EEEEEEeCCCCCH----HHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cc
Confidence 456 8889999999751 223334456666666554 36899999999 88
No 200
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.06 E-value=1.5e-09 Score=105.17 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=61.0
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCC---ceec-cccCCCchHHHHHHHHH--
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG---EFEA-GISKNGQTREHALLAFT-- 142 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g---~~~~-~~~~~~qt~e~~~~~~~-- 142 (459)
+..|+.+....++..+..+.+|||+|++.|.+.+..++..++++|+|+|.++- ..+. ...........+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 44566666777888889999999999999999999999999999999999720 0000 00000012222222221
Q ss_pred --cCCceEEEEEEccCCC
Q psy13961 143 --LGVKQLIVGVNKMDST 158 (459)
Q Consensus 143 --~~ip~iivviNK~D~~ 158 (459)
.++| ++++.||+|+.
T Consensus 225 ~~~~~p-iiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLF 241 (340)
T ss_dssp GGTTSE-EEEEEECHHHH
T ss_pred ccCCCe-EEEEEECchhh
Confidence 3567 89999999985
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=1.6e-10 Score=112.70 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=56.1
Q ss_pred eCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCC
Q psy13961 82 TSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161 (459)
Q Consensus 82 ~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~ 161 (459)
..+..+.|+||||..+-.. .....+|++++|+|+..+.....+ .+.+ ..++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i------~~~i-----~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI------KKGI-----FELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C------CTTH-----HHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH------HHHH-----hccc-cEEEEEchhccCc-
Confidence 4578999999999764221 223679999999998644110001 0000 1235 3566799997541
Q ss_pred CcHHHHHHHHHHHHhhhhhcCcC-C-ceeeEeecCCCCCCccc
Q psy13961 162 YSEARFEEIKKEVSGYIKKIGYN-P-ATVAFVPISGWHGDNML 202 (459)
Q Consensus 162 ~~~~~~~~i~~~l~~~l~~~g~~-~-~~~~~i~iSa~~g~~i~ 202 (459)
........+++...+..+.-. . ...+++++||+++.|+.
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~ 249 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLD 249 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHH
Confidence 122222233333333222100 0 02468899999999984
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=2e-10 Score=117.10 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=42.3
Q ss_pred CCEEEEEEeCCCccc----hHhHHHHh--hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRD----FIKNMITG--TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
.++.+.||||||... +...+... +..+|.+++|+|+..+. ...+.+..+.. .+|-.++|+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~-~~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKD-KVDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHH-HHCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHh-hcCceEEEEeCCc
Confidence 678899999999763 33333222 23789999999998762 22222322222 1551267789999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 252 ~~~ 254 (504)
T 2j37_W 252 GHA 254 (504)
T ss_dssp SCC
T ss_pred ccc
Confidence 874
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.97 E-value=1.6e-09 Score=104.45 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=80.8
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---ee-ccccCCCchHHHHHHHHH--
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---FE-AGISKNGQTREHALLAFT-- 142 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~~-~~~~~~~qt~e~~~~~~~-- 142 (459)
+..|+.+....++..+..+.+|||+|++.|.+.+..+++.++++|+|+|.+.-. .+ ............+..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445666666777888899999999999999999999999999999999875100 00 000000012222222221
Q ss_pred --cCCceEEEEEEccCCCCC------------CCc--HHHHHHHHHHHHhhhhhcCc-CCceeeEeecCCCCCCcc
Q psy13961 143 --LGVKQLIVGVNKMDSTEP------------PYS--EARFEEIKKEVSGYIKKIGY-NPATVAFVPISGWHGDNM 201 (459)
Q Consensus 143 --~~ip~iivviNK~D~~~~------------~~~--~~~~~~i~~~l~~~l~~~g~-~~~~~~~i~iSa~~g~~i 201 (459)
.++| ++++.||+|+... +|. ...+++..+-+...+..+.. ....+.+..+||+++.|+
T Consensus 231 ~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 231 WFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp GGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHH
T ss_pred ccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHH
Confidence 3577 8999999998531 000 01233344433333332221 123467888999999998
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.91 E-value=1.8e-09 Score=106.16 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=29.8
Q ss_pred CEEEEEEeCCCccchH-------hHHHHhhcccCEEEEEEECCC
Q psy13961 84 KFYVTIIDAPGHRDFI-------KNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvda~~ 120 (459)
...+.|+||||+.++. ......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3579999999987652 345667889999999999975
No 205
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.90 E-value=9.8e-09 Score=100.37 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCC-------CceeccccCCCchHHHHHHHHH----cCCceEEEE
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT-------GEFEAGISKNGQTREHALLAFT----LGVKQLIVG 151 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~-------g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivv 151 (459)
....+.+|||+|+++|...+...+..+|++|+|+|.+. ......+. .....+..+.. .++| ++++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~---~~~~~~~~i~~~~~~~~~p-iiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMM---ETKELFDWVLKQPCFEKTS-FMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH---HHHHHHHHHHTCGGGSSCE-EEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHH---HHHHHHHHHHhccccCCCe-EEEE
Confidence 34689999999999999999999999999999999861 10000010 22223322221 3577 8999
Q ss_pred EEccCCC
Q psy13961 152 VNKMDST 158 (459)
Q Consensus 152 iNK~D~~ 158 (459)
.||+|+.
T Consensus 257 gNK~DL~ 263 (354)
T 2xtz_A 257 LNKFDIF 263 (354)
T ss_dssp EECHHHH
T ss_pred EECcchh
Confidence 9999984
No 206
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.87 E-value=3.2e-09 Score=103.85 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=82.5
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCce-------eccccCCCchHHHHHHHH
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF-------EAGISKNGQTREHALLAF 141 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~~~~~~~~qt~e~~~~~~ 141 (459)
+..|+.+....++.++..+.+|||+|+++|.+.+...+..++++|+|+|.++-.. ...+ ......+..+.
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~---~e~~~~~~~i~ 253 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---HESMKLFDSIC 253 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHH---HHHHHHHHHHH
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhH---HHHHHHHHHHH
Confidence 3456666666778888999999999999999999999999999999999986210 0001 02222332222
Q ss_pred H----cCCceEEEEEEccCCCCCC------------Cc-HHHHHHHHHHHHhhhhhcCcC--CceeeEeecCCCCCCcc
Q psy13961 142 T----LGVKQLIVGVNKMDSTEPP------------YS-EARFEEIKKEVSGYIKKIGYN--PATVAFVPISGWHGDNM 201 (459)
Q Consensus 142 ~----~~ip~iivviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l~~~g~~--~~~~~~i~iSa~~g~~i 201 (459)
. .++| +|++.||+|+.... +. ....++..+.+...+..+... ...+.++++||++++|+
T Consensus 254 ~~~~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 254 NNKWFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp TCGGGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred cCccccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 2 3577 89999999985200 00 011333333333322222211 23578999999999998
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.79 E-value=3.9e-09 Score=96.64 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=52.3
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~ 163 (459)
+..+.++|++|...-. . ..-...+..+.|+|+..+.. . .. .. ...++.| .++|+||+|+.+. .
T Consensus 118 ~~d~~~id~~g~i~~~-~--s~~~~~~~~~~v~~~~~~~~---~----~~-~~---~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP-A--DFDLGTHKRIVVISTTEGDD---T----IE-KH---PGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSGG-G--GCCCSCSEEEEEEEGGGCTT---T----TT-TC---HHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccCc-c--hhhhccCcEEEEEecCcchh---h----Hh-hh---hhHhhcC-CEEEEeccccCch--h
Confidence 3478899999942110 0 11124577888898754311 0 10 01 1224678 6788999998641 0
Q ss_pred HHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 164 ~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+..++++.+ .++.++ ...+++++||++|+|+
T Consensus 181 ~~~~~~~~~----~~~~~~---~~~~~~~~Sa~~g~gv 211 (226)
T 2hf9_A 181 GADIKKMEN----DAKRIN---PDAEVVLLSLKTMEGF 211 (226)
T ss_dssp TCCHHHHHH----HHHHHC---TTSEEEECCTTTCTTH
T ss_pred HHHHHHHHH----HHHHhC---CCCeEEEEEecCCCCH
Confidence 012233333 333322 1357899999999999
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.73 E-value=1.6e-08 Score=99.83 Aligned_cols=85 Identities=20% Similarity=0.159 Sum_probs=49.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
....+|+++|.+|+|||||+++|+...-.. ....+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~-------------------------------~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASA-------------------------------ENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCccccCceeEEEEECC
Confidence 345789999999999999999997421100 000122322222222211
Q ss_pred ----------------CEEEEEEeCCCccchHh-------HHHHhhcccCEEEEEEECCC
Q psy13961 84 ----------------KFYVTIIDAPGHRDFIK-------NMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 84 ----------------~~~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvda~~ 120 (459)
...+.|+||||+.++.. .....++.+|++++|+|+.+
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23689999999987654 45677889999999999974
No 209
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.71 E-value=1.3e-08 Score=99.77 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=73.2
Q ss_pred cCceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---e----eccccCCCchHHHHHHHH
Q psy13961 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---F----EAGISKNGQTREHALLAF 141 (459)
Q Consensus 69 ~g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~----~~~~~~~~qt~e~~~~~~ 141 (459)
+..|+.+....++..+..+.+|||||++.|...+...+..++++|+|+|.++-. . ...+. .....+....
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~---es~~~~~~i~ 261 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT---ESLNIFETIV 261 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHH---HHHHHHHHHH
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHH---HHHHHHHHHh
Confidence 344555556677778899999999999999999999999999999999998620 0 00010 2222332222
Q ss_pred H----cCCceEEEEEEccCCCCC------------CCc--HHHHHHHHHHHHhhhhhcCcC--CceeeEeecCCCCCCcc
Q psy13961 142 T----LGVKQLIVGVNKMDSTEP------------PYS--EARFEEIKKEVSGYIKKIGYN--PATVAFVPISGWHGDNM 201 (459)
Q Consensus 142 ~----~~ip~iivviNK~D~~~~------------~~~--~~~~~~i~~~l~~~l~~~g~~--~~~~~~i~iSa~~g~~i 201 (459)
. .++| +|+++||+|+... +|. ...+++..+.+...+..+.-. ...+.++++||++++|+
T Consensus 262 ~~~~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 262 NNRVFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340 (362)
T ss_dssp TCGGGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred cchhhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence 1 3577 8999999998520 000 012333333332222222111 13467899999999998
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=5.3e-08 Score=96.85 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+++++|+.|||||||++.|+.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999999974
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.61 E-value=2.3e-09 Score=105.82 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=70.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.+|+|||||+|+|+.... +.. .........|.|.+.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~-----------------~~~--------~~~~~~~~~gtT~~~~~~~~~---~~ 213 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEAT-----------------GKG--------NVITTSYFPGTTLDMIEIPLE---SG 213 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHH-----------------HTT--------CCCEEEECTTSSCEEEEEECS---TT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhcc-----------------CCc--------cceeecCCCCeEEeeEEEEeC---CC
Confidence 45899999999999999999985410 000 000001123556555443332 23
Q ss_pred EEEEeCCCccchH-------hHHHHhh---cccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 87 VTIIDAPGHRDFI-------KNMITGT---SQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 87 ~~liDtpG~~~~~-------~~~~~~~---~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
+.++||||..+.. ...+..+ ...|.+++++++....+..++.. +..+...+.| +++++||+|
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCce-EEEEecCCc
Confidence 7899999964321 1122223 56899999999965443322221 2223335677 899999999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 286 ~~~ 288 (369)
T 3ec1_A 286 TVH 288 (369)
T ss_dssp CEE
T ss_pred ccc
Confidence 975
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.60 E-value=5.2e-09 Score=103.19 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=67.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCCEE
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFY 86 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~ 86 (459)
..+|+++|.+|+|||||+|+|+....... . +........|.|.+.....+.. .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~----------------~--------~~~~~~~~~gtT~~~~~~~~~~---~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDET----------------E--------NVITTSHFPGTTLDLIDIPLDE---E 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSC----------------S--------SCCEEECCC----CEEEEESSS---S
T ss_pred cceEEEecCCCCChhHHHHHHHhhhcccc----------------c--------cceecCCCCCeecceEEEEecC---C
Confidence 35899999999999999999985421100 0 0000011235555444333222 3
Q ss_pred EEEEeCCCccch------H-hHHHHh---hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 87 VTIIDAPGHRDF------I-KNMITG---TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 87 ~~liDtpG~~~~------~-~~~~~~---~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
+.++||||..+. + ...+.. ....+..++++++....+..++.. +..+...+.| +++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCcc
Confidence 889999997432 1 112222 356889999999865544333211 2222335677 899999999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 285 ~~~ 287 (368)
T 3h2y_A 285 TIH 287 (368)
T ss_dssp CEE
T ss_pred ccc
Confidence 976
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=7.5e-08 Score=92.32 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=68.3
Q ss_pred EEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHH
Q psy13961 86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165 (459)
Q Consensus 86 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~ 165 (459)
.+.+||| |++|...+..+++.+|++|+|+|+++..+. +. ....++..++..++| +++|+||+|+.+. .
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s--~~---~l~~~l~~~~~~~~p-iilv~NK~DL~~~----~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETS--TY---IIDKFLVLAEKNELE-TVMVINKMDLYDE----D 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCC--HH---HHHHHHHHHHHTTCE-EEEEECCGGGCCH----H
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCC--HH---HHHHHHHHHHHCCCC-EEEEEeHHHcCCc----h
Confidence 6889999 899887777888999999999999865211 10 223344455557888 7888999999761 1
Q ss_pred HHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 166 ~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
.. +++.++++.++. . .+++++||++|+|+.+
T Consensus 132 ~v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp HH----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHH
T ss_pred hH----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHH
Confidence 11 223333333321 1 4789999999999854
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=1.9e-07 Score=93.75 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=41.8
Q ss_pred CCEEEEEEeCCCccch----HhHHHH--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCC-ceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMIT--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV-KQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~i-p~iivviNK~ 155 (459)
.++.+.||||||.... ...+.. .+..+|.+++|+|+..+. .....+.... .++ |...+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 5678999999997653 232222 123689999999997651 2222222222 235 5357778999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9864
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.56 E-value=6.7e-07 Score=88.93 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=88.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeCC-E
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-F 85 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~ 85 (459)
...++++|+.|||||||++.|+.... .+ +|+.. .+..+..+ .+. .++... .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~-p~---------------~GsI~----~~g~~~t~-~~~-------v~q~~~~~ 120 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN-EE---------------EGAAK----TGVVEVTM-ERH-------PYKHPNIP 120 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT-TS---------------TTSCC----CCC----C-CCE-------EEECSSCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC-cc---------------CceEE----ECCeecce-eEE-------eccccccC
Confidence 34899999999999999999974210 00 11111 11111101 111 122222 2
Q ss_pred EEEEEeCCCccc---hHhHHHH--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC-
Q psy13961 86 YVTIIDAPGHRD---FIKNMIT--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE- 159 (459)
Q Consensus 86 ~~~liDtpG~~~---~~~~~~~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~- 159 (459)
.++++|+||... -....+. ++...|..++ +|...+ . .|....+..+...+.| +++|+||.|+.-
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~-~-------kqrv~la~aL~~~~~p-~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF-K-------KNDIDIAKAISMMKKE-FYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC-C-------HHHHHHHHHHHHTTCE-EEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc-c-------HHHHHHHHHHHhcCCC-eEEEEecCccccc
Confidence 578999999642 1222222 2344465554 776432 1 1444444555567888 889999998741
Q ss_pred ----CCCcHHHHHHHHHHHHhhh----hhcCcCCceeeEeecCC--CCCCccccccCCCCCccccccccccCCCChhhHH
Q psy13961 160 ----PPYSEARFEEIKKEVSGYI----KKIGYNPATVAFVPISG--WHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLI 229 (459)
Q Consensus 160 ----~~~~~~~~~~i~~~l~~~l----~~~g~~~~~~~~i~iSa--~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g~~Ll 229 (459)
...+....+++.+.++++. ...|. +...++++|+ ..+.|+ +.|.
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~--~~~~iiliSsh~l~~~~~------------------------e~L~ 244 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGI--AEPPIFLLSNKNVCHYDF------------------------PVLM 244 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC--SSCCEEECCTTCTTSTTH------------------------HHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCC--CCCcEEEEecCcCCccCH------------------------HHHH
Confidence 0000011233334444432 22232 1235789999 566566 6788
Q ss_pred HhccccCCC
Q psy13961 230 EALDAILPP 238 (459)
Q Consensus 230 ~~l~~~~~~ 238 (459)
+.+...+|.
T Consensus 245 d~I~~~Lpe 253 (413)
T 1tq4_A 245 DKLISDLPI 253 (413)
T ss_dssp HHHHHHSCG
T ss_pred HHHHHhCcc
Confidence 888776654
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.53 E-value=4.6e-07 Score=85.26 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=42.0
Q ss_pred ccCEEEEEEECC-CCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCc
Q psy13961 108 QADCAVLIVAAG-TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183 (459)
Q Consensus 108 ~aD~~ilVvda~-~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 183 (459)
.++++++++|.. .+.. +...+.+..+... ++ +|+++||+|... +......++.+.+.++..+.
T Consensus 111 Ral~~lllldep~~gL~-------~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt----~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLR-------PLDLEFMKHLSKV-VN-IIPVIAKADTMT----LEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp SCCEEEEEECCCSSSCC-------HHHHHHHHHHHTT-SE-EEEEETTGGGSC----HHHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeeEEEecCCCcCC-------HHHHHHHHHHHhc-Cc-EEEEEeccccCC----HHHHHHHHHHHHHHHHHcCc
Confidence 368899999964 3422 2556666666555 66 899999999986 24455666666666665554
No 217
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.53 E-value=1.5e-07 Score=93.09 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=60.1
Q ss_pred CceEEeeeeEEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCc---e----eccccCCCchHHHHHHHHH
Q psy13961 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE---F----EAGISKNGQTREHALLAFT 142 (459)
Q Consensus 70 g~Ti~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~---~----~~~~~~~~qt~e~~~~~~~ 142 (459)
..|+.+....+...+..+.||||+|+++|...+...+..++++|+|+|.++-. . ...+. .....+..+..
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~---e~~~~~~~i~~ 278 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQ---EALNLFKSIWN 278 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHH---HHHHHHHHHHT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHH---HHHHHHHHHHh
Confidence 34555556667778899999999999999999999999999999999998610 0 01110 22223332222
Q ss_pred ----cCCceEEEEEEccCCC
Q psy13961 143 ----LGVKQLIVGVNKMDST 158 (459)
Q Consensus 143 ----~~ip~iivviNK~D~~ 158 (459)
.++| ++++.||+|+.
T Consensus 279 ~~~~~~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 279 NRWLRTIS-VILFLNKQDLL 297 (402)
T ss_dssp CTTCSSCC-EEEEEECHHHH
T ss_pred cccCCCCe-EEEEEEChhhh
Confidence 2567 89999999984
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.43 E-value=3.7e-07 Score=90.18 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=55.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEeeC-
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS- 83 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~- 83 (459)
.+..+|+++|++|+|||||+++|+........ ...+.|++.....+...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~------------------------------~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA------------------------------NYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT------------------------------CCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccc------------------------------CCCceeecceeeeeeeCC
Confidence 34568999999999999999999853210100 00122222222222222
Q ss_pred ----------------CEEEEEEeCCCccc-------hHhHHHHhhcccCEEEEEEECCC
Q psy13961 84 ----------------KFYVTIIDAPGHRD-------FIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 84 ----------------~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
...+.++|+||... +.......++.+|.+++|+|+..
T Consensus 68 ~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 68 ERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24689999999643 33356667789999999999964
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.37 E-value=9.5e-07 Score=83.67 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=55.9
Q ss_pred EEeCCCcc-chHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHH
Q psy13961 89 IIDAPGHR-DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARF 167 (459)
Q Consensus 89 liDtpG~~-~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~ 167 (459)
+-+.|||. +..+.+...+..+|++++|+||+.+... .. ..+.... .+.| .++|+||+|+++. ..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~-------~~-~~l~~~l-~~kp-~ilVlNK~DL~~~----~~- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSS-------RN-PMIEDIL-KNKP-RIMLLNKADKADA----AV- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTT-------SC-HHHHHHC-SSSC-EEEEEECGGGSCH----HH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCcc-------CC-HHHHHHH-CCCC-EEEEEECcccCCH----HH-
Confidence 44689997 5778888899999999999999876321 11 1121111 3667 7888999999861 22
Q ss_pred HHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 168 EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 168 ~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
.+...++++..+ ++++++||.++.|+
T Consensus 68 ---~~~~~~~~~~~g-----~~~i~iSA~~~~gi 93 (282)
T 1puj_A 68 ---TQQWKEHFENQG-----IRSLSINSVNGQGL 93 (282)
T ss_dssp ---HHHHHHHHHTTT-----CCEEECCTTTCTTG
T ss_pred ---HHHHHHHHHhcC-----CcEEEEECCCcccH
Confidence 222233343333 36889999999998
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=3.6e-06 Score=84.12 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=40.6
Q ss_pred CCEEEEEEeCCCccch----HhHH--HHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNM--ITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
.++.+.||||||.... ..++ +..+..+|.++||+||..|. .....+..... .++...|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---------~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---------QAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---------hHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4578999999995432 2222 12234689999999998651 22233332222 2332457789999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 251 ~~~ 253 (443)
T 3dm5_A 251 GSA 253 (443)
T ss_dssp SCS
T ss_pred Ccc
Confidence 875
No 221
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.32 E-value=2.3e-06 Score=76.07 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=82.4
Q ss_pred CceeEEEEEecC-CCChHHHHhHHHHhcCCC-----ChHHHHHHHHHHHHhCCC-----------cceeeeeccCchhHH
Q psy13961 5 KTHINIVVIGHV-DSGKSTTTGHLIYKCGGI-----DKRTIEKFEKEAQEMGKG-----------SFKYAWVLDKLKAER 67 (459)
Q Consensus 5 k~~~~v~v~G~~-~~GKSTLi~~Ll~~~~~i-----~~~~~~~~~~~~~~~g~~-----------~~~~~~~~d~~~~e~ 67 (459)
+...++|+.|+- ..=+.+|+.+|++..... ..+. ..|-| .|+.-++......||
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~---------~~gigsgv~~~~~~~~~fni~tlys~~~~er 84 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQ---------IDGIGSGVNFQLNNQHKFNILILYSTTRKER 84 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGC---------CTTSCCCEEEESSSSCEEEEEECSCC-----
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCC---------cCccccceEEEECCeeEEEEEEeccCcHHHh
Confidence 456789999963 334558999988643111 1111 11222 244445555556666
Q ss_pred hcCceEEeeeeEEeeCCEEEEEEeCC------CccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHH---
Q psy13961 68 ERGITIDIALWKFETSKFYVTIIDAP------GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL--- 138 (459)
Q Consensus 68 ~~g~Ti~~~~~~~~~~~~~~~liDtp------G~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~--- 138 (459)
++..--+.+. ..++..-.+| |+..+...|..++..+|++|+|||+++.... ..++.+.
T Consensus 85 ~~~~~~~~~~------~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~-------eak~EL~eL~ 151 (227)
T 3l82_B 85 DRAREEHTSA------VNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRH-------EWQDEFSHIM 151 (227)
T ss_dssp --------------------------------------CCHHHHHHHCSEEEEEEECBTTCCC-------CHHHHHHHHH
T ss_pred hhhhhhhhhh------hhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHH-------HHHHHHHHHH
Confidence 5432221111 1133344444 8888999999999999999999999865321 2444331
Q ss_pred -HHH----HcCCceEEEEEEcc-CCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 139 -LAF----TLGVKQLIVGVNKM-DSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 139 -~~~----~~~ip~iivviNK~-D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
++. ..++| ++|+.||. |+++. -...++.+.+. |..+ . ..+.+.++||++|+|+
T Consensus 152 ~mL~ee~~L~gap-LLVlANKqqDlp~A----ms~~EI~e~L~--L~~l--~-R~W~Iq~csA~TGeGL 210 (227)
T 3l82_B 152 AMTDPAFGSSGRP-LLVLSCISQGDVKR----MPCFYLAHELH--LNLL--N-HPWLVQDTEAETLTGF 210 (227)
T ss_dssp HHSCTTSSCSCSC-EEEEEEESSTTSCB----CCHHHHHHHTT--GGGG--C-SCEEEEEEETTTCTTH
T ss_pred HHhcchhhhCCCe-EEEEeCCCcCccCC----CCHHHHHHHcC--CcCC--C-CCEEEEEeECCCCcCH
Confidence 111 14678 77778995 77653 22234444442 2222 2 4688999999999999
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=2.7e-06 Score=85.02 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=41.1
Q ss_pred CCEEEEEEeCCCccc------hHhHHHH--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEE
Q psy13961 83 SKFYVTIIDAPGHRD------FIKNMIT--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVN 153 (459)
Q Consensus 83 ~~~~~~liDtpG~~~------~~~~~~~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviN 153 (459)
.++.+.|+||||... +..++.. ....+|.++||+|+..|. .....+.... ..++ ..|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq---------~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ---------KAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch---------HHHHHHHHHhcccCC--cEEEEe
Confidence 467889999999644 3333332 223579999999998651 2233333333 3343 456689
Q ss_pred ccCCCC
Q psy13961 154 KMDSTE 159 (459)
Q Consensus 154 K~D~~~ 159 (459)
|+|...
T Consensus 247 KlD~~a 252 (433)
T 3kl4_A 247 KMDGTA 252 (433)
T ss_dssp CGGGCS
T ss_pred cccccc
Confidence 999864
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.19 E-value=1.8e-06 Score=86.67 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCEEEEEEeCCCccchHhHHHH------hhcccCEEEEEEECCCCceeccccCCCchHHHHHHH-HHcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMIT------GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA-FTLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~------~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~-~~~~ip~iivviNK~ 155 (459)
.++.+.||||||...+...+.. .+..+|.+++|+|+..+. .....+... ..+++. -+++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5678999999997654332222 234689999999997651 222222222 234444 3467999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 251 D~~~ 254 (433)
T 2xxa_A 251 DGDA 254 (433)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 9854
No 224
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.19 E-value=1.6e-06 Score=82.98 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=72.0
Q ss_pred ccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHH
Q psy13961 95 HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEV 174 (459)
Q Consensus 95 ~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l 174 (459)
|++|.......++.+|.+++|+|+++..+. + ....+.+..+...++| +++|+||+|+.+. ...+ ..++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~----~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDLLNE----EEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGGCCH----HHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccCCCc----cccH-HHHHH
Confidence 455544444567899999999999865321 1 0223455566678899 7888999999861 1111 12333
Q ss_pred HhhhhhcCcCCceeeEeecCCCCCCccccccCCCCCccccccccccCCCCh-hhHHHhccccCCC
Q psy13961 175 SGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADG-KCLIEALDAILPP 238 (459)
Q Consensus 175 ~~~l~~~g~~~~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g-~~Ll~~l~~~~~~ 238 (459)
..+++..|+ +++++||++|+|+.+... +..|......-.++.| .+|+..|. ..++
T Consensus 135 ~~~~~~~g~-----~~~~~SA~~g~gi~~L~~---~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 135 ISIYRDAGY-----DVLKVSAKTGEGIDELVD---YLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHHHHTTC-----EEEECCTTTCTTHHHHHH---HTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred HHHHHHCCC-----eEEEEECCCCCCHHHHHh---hccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 444444443 689999999999854321 1112111111113334 57788777 5543
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.08 E-value=6.3e-06 Score=78.54 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=43.1
Q ss_pred CCEEEEEEeCCCccc--hHhHHH------HhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEc
Q psy13961 83 SKFYVTIIDAPGHRD--FIKNMI------TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 154 (459)
Q Consensus 83 ~~~~~~liDtpG~~~--~~~~~~------~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK 154 (459)
.++.+.||||||... ....+. ..+..+|.+++|+|+..+. +..+.+..... .++-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---------KAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---------GHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---------HHHHHHHHHHh-hCCCCEEEEeC
Confidence 567899999999776 322222 2345799999999997541 33334333332 35534667899
Q ss_pred cCCCC
Q psy13961 155 MDSTE 159 (459)
Q Consensus 155 ~D~~~ 159 (459)
+|...
T Consensus 249 ~D~~~ 253 (297)
T 1j8m_F 249 MDGTA 253 (297)
T ss_dssp GGGCT
T ss_pred CCCCc
Confidence 99764
No 226
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.07 E-value=3.7e-06 Score=64.83 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=70.1
Q ss_pred EEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCcccCcceeE
Q psy13961 248 LPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGF 324 (459)
Q Consensus 248 ~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~~i~~G~ 324 (459)
.-|.++|+++..|+++.++|.+|.++.+..+.+...+. ..++.|+..+...+.++.+|.-|++.|.+ .+|++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~--~~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC--cCCCCCCC
Confidence 45678899999999999999999999999999999883 55888999999999999999999999987 46899999
Q ss_pred EEc
Q psy13961 325 VAG 327 (459)
Q Consensus 325 vl~ 327 (459)
+|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.04 E-value=2.9e-06 Score=87.97 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+..+|+|+|.+|+|||||+|+|+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcC
Confidence 4568899999999999999999974
No 228
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.02 E-value=1.7e-05 Score=63.32 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=70.3
Q ss_pred eEEeEEEEEeCCcee---EEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccceeEcCCCeEEEEEccCccc-C
Q psy13961 247 RLPLQDVYKIGGIGT---VPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK-E 319 (459)
Q Consensus 247 ~~~i~~v~~~~~~G~---v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~~~-~ 319 (459)
..-|.++|+++..|+ |+.++|..|.++.+..+.+...+. ..++.|+..+...+.++.+|.-|++.|.+ .+ |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 456789999987787 999999999999999999999883 45788899999999999999999999887 46 8
Q ss_pred cceeEEEcc
Q psy13961 320 LRRGFVAGD 328 (459)
Q Consensus 320 i~~G~vl~~ 328 (459)
++.||+|-.
T Consensus 90 ik~GDiIE~ 98 (120)
T 2crv_A 90 FKPGDQVIC 98 (120)
T ss_dssp CCTTEEEEE
T ss_pred CCCCCEEEE
Confidence 999999843
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.01 E-value=3.7e-06 Score=78.72 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=51.6
Q ss_pred CCCccch-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHH
Q psy13961 92 APGHRDF-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEI 170 (459)
Q Consensus 92 tpG~~~~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i 170 (459)
-|||... .+.+...+..+|++++|+||+.+..... ... + + + ++| .++|+||+|+++. ...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l-~-l--l---~k~-~iivlNK~DL~~~----~~~--- 64 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGV-D-F--S---RKE-TIILLNKVDIADE----KTT--- 64 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTS-C-C--T---TSE-EEEEEECGGGSCH----HHH---
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHH-H-h--c---CCC-cEEEEECccCCCH----HHH---
Confidence 3898754 4577788899999999999987632210 011 1 1 1 788 6888999999862 222
Q ss_pred HHHHHhhhhhcCcCCceeeEeecCCCCCCcc
Q psy13961 171 KKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201 (459)
Q Consensus 171 ~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i 201 (459)
+...++++..|+ ++ ++||.++.|+
T Consensus 65 -~~~~~~~~~~g~-----~v-~iSa~~~~gi 88 (262)
T 3cnl_A 65 -KKWVEFFKKQGK-----RV-ITTHKGEPRK 88 (262)
T ss_dssp -HHHHHHHHHTTC-----CE-EECCTTSCHH
T ss_pred -HHHHHHHHHcCC-----eE-EEECCCCcCH
Confidence 222334444444 46 8999999988
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.94 E-value=7.4e-06 Score=77.48 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++|+++|.+|+|||||+|+|+.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEecCCCchHHHHHHHhc
Confidence 3467999999999999999999974
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.93 E-value=1.1e-05 Score=79.43 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=61.5
Q ss_pred EEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHH
Q psy13961 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 166 (459)
Q Consensus 87 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~ 166 (459)
+.-+|+| +++|.+.+......+|++++|+|+++.. ..+. ....+.+ .+.| +++|+||+|+.+.+. .
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~--~s~~--~~l~~~l-----~~~p-iilV~NK~DLl~~~~---~ 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFN--GSFI--PGLPRFA-----ADNP-ILLVGNKADLLPRSV---K 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSG--GGCC--SSHHHHC-----TTSC-EEEEEECGGGSCTTC---C
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCC--Cchh--hHHHHHh-----CCCC-EEEEEEChhcCCCcc---C
Confidence 3444554 7888887777778899999999998642 1111 1222221 2677 788899999986321 1
Q ss_pred HHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCccc
Q psy13961 167 FEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNML 202 (459)
Q Consensus 167 ~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~i~ 202 (459)
.+.+.+.+..+++..|+.+ .+++++||++|.|+.
T Consensus 117 ~~~~~~~l~~~~~~~g~~~--~~v~~iSA~~g~gi~ 150 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLCP--VDVCLVSAAKGIGMA 150 (369)
T ss_dssp HHHHHHHHHHHHHTTTCCC--SEEEECBTTTTBTHH
T ss_pred HHHHHHHHHHHHHHcCCCc--ccEEEEECCCCCCHH
Confidence 2344455555666667632 357899999999984
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.91 E-value=1.4e-05 Score=78.51 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=60.8
Q ss_pred CccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHH
Q psy13961 94 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKE 173 (459)
Q Consensus 94 G~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~ 173 (459)
..++|.+.+....+.+|++++|+|+++.. ..+. ....+. ..+.| +++|+||+|+.+.+.. .+++.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~--~~l~~~-----~~~~p-~ilV~NK~DL~~~~~~---~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWL--PGLHRF-----VGNNK-VLLVGNKADLIPKSVK---HDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCC--TTHHHH-----SSSSC-EEEEEECGGGSCTTSC---HHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHH--HHHHHH-----hCCCc-EEEEEEChhcCCcccC---HHHHHHH
Confidence 45678877777777889999999997531 1111 011111 12677 7888999999763221 2344445
Q ss_pred HHhhhhhcCcCCceeeEeecCCCCCCcccc
Q psy13961 174 VSGYIKKIGYNPATVAFVPISGWHGDNMLE 203 (459)
Q Consensus 174 l~~~l~~~g~~~~~~~~i~iSa~~g~~i~~ 203 (459)
+..+++..|+.+ .+++++||++|.|+.+
T Consensus 122 l~~~~~~~g~~~--~~v~~iSA~~g~gi~~ 149 (368)
T 3h2y_A 122 MRYSAKQLGLKP--EDVFLISAAKGQGIAE 149 (368)
T ss_dssp HHHHHHHTTCCC--SEEEECCTTTCTTHHH
T ss_pred HHHHHHHcCCCc--ccEEEEeCCCCcCHHH
Confidence 555566666632 3588999999999843
No 233
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.83 E-value=3.4e-05 Score=72.02 Aligned_cols=127 Identities=10% Similarity=0.040 Sum_probs=67.2
Q ss_pred ceeeeeccCchhHHhcCceEEeeee----EEeeCCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccC
Q psy13961 54 FKYAWVLDKLKAERERGITIDIALW----KFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129 (459)
Q Consensus 54 ~~~~~~~d~~~~e~~~g~Ti~~~~~----~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~ 129 (459)
|+..++...+..||+|....+.+.. ..+..+ ==|..|+..+...+..++..+|++|+|||+++..- +
T Consensus 156 fni~tLYs~tr~ER~r~~~e~~~~~~k~f~~~~~~----~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---l-- 226 (312)
T 3l2o_B 156 FNILILYSTTRKERDRAREEHTSAVNKMFSRHNEG----DDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---H-- 226 (312)
T ss_dssp EEEEECSCCCC----------------------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCC---C--
T ss_pred EEEEEeccccHHHHhhhhhhhhhhhhhhccccCCC----CcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---H--
Confidence 4555556666666665433322211 111111 01346889999999999999999999999987532 1
Q ss_pred CCchHHHH----HHH---H-HcCCceEEEEEEc-cCCCCCCCcHHHHHHHHHHHHhhhhhcCcCCceeeEeecCCCCCCc
Q psy13961 130 NGQTREHA----LLA---F-TLGVKQLIVGVNK-MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDN 200 (459)
Q Consensus 130 ~~qt~e~~----~~~---~-~~~ip~iivviNK-~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~i~iSa~~g~~ 200 (459)
..++.+ .++ . ..++| ++|+.|| .|+++. -...++.+.+. |..+ . ..+.+.++||++|+|
T Consensus 227 --eak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~A----ms~~EI~e~L~--L~~l--~-r~W~Iq~csA~tGeG 294 (312)
T 3l2o_B 227 --EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKR----MPCFYLAHELH--LNLL--N-HPWLVQDTEAETLTG 294 (312)
T ss_dssp --CHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCB----CCHHHHHHHTT--GGGG--C-SCEEEEEEETTTCTT
T ss_pred --HHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCC----CCHHHHHHHcC--CccC--C-CcEEEEecccCCCcC
Confidence 233322 222 1 24788 7777897 588653 12234444442 2222 2 468899999999999
Q ss_pred c
Q psy13961 201 M 201 (459)
Q Consensus 201 i 201 (459)
+
T Consensus 295 L 295 (312)
T 3l2o_B 295 F 295 (312)
T ss_dssp H
T ss_pred H
Confidence 9
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.75 E-value=0.00013 Score=70.33 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCccch----HhHHHH--hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEccC
Q psy13961 84 KFYVTIIDAPGHRDF----IKNMIT--GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKMD 156 (459)
Q Consensus 84 ~~~~~liDtpG~~~~----~~~~~~--~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~D 156 (459)
++.+.++||+|.... ...+.. .+-.+|-.++++|+..+. +..+.+.... ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---------~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---------AIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---------HHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 345678999997433 333221 123489999999987651 3444444333 45666 45579999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 280 ~~a 282 (328)
T 3e70_C 280 ADA 282 (328)
T ss_dssp GCS
T ss_pred Ccc
Confidence 753
No 235
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.63 E-value=0.00013 Score=74.26 Aligned_cols=97 Identities=24% Similarity=0.313 Sum_probs=78.3
Q ss_pred HhccccCCCCCCCCCCeeEEeEEEEEeCCceeEEEEEEEeeeEecCCeEEEecCC---eEEEEEEEEeccccceeEcCCC
Q psy13961 230 EALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN---LTTEVKSVEMHHEALQEAVPGD 306 (459)
Q Consensus 230 ~~l~~~~~~~~~~~~p~~~~i~~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~---~~~~V~~I~~~~~~v~~a~aGd 306 (459)
+++..+++|.....---...|..+|+.+..|.++.++|..|+++.|..+.+...+ ...+|.||+.+..++.++..|+
T Consensus 393 ~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ 472 (501)
T 1zo1_I 393 AAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGM 472 (501)
T ss_dssp HHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTC
T ss_pred HHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCC
Confidence 3444555554333323345577899998889999999999999999999998877 4678999999999999999999
Q ss_pred eEEEEEccCcccCcceeEEEcc
Q psy13961 307 NVGFNVKNVSVKELRRGFVAGD 328 (459)
Q Consensus 307 ~v~l~l~~~~~~~i~~G~vl~~ 328 (459)
-|++.+.+ ..+++.||+|-.
T Consensus 473 ecgi~~~~--~~~~~~gd~~~~ 492 (501)
T 1zo1_I 473 ECGIGVKN--YNDVRTGDVIEV 492 (501)
T ss_dssp CEEEEBCC--CTTCCTTCEEEE
T ss_pred EEEEEEcC--cCCCCCCCEEEE
Confidence 99999987 468999999853
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.60 E-value=7.4e-05 Score=71.24 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=54.1
Q ss_pred hhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcC
Q psy13961 105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184 (459)
Q Consensus 105 ~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 184 (459)
.+..+|.+++|+|+..+.+.. ....+.+..+...++| .++|+||+|+.++ ....+..+.+...++..|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~-----~~i~r~L~~~~~~~~~-~vivlnK~DL~~~----~~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFST-----ALLDRFLVLVEANDIQ-PIICITKMDLIED----QDTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCH-----HHHHHHHHHHHTTTCE-EEEEEECGGGCCC----HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCCH-----HHHHHHHHHHHHCCCC-EEEEEECCccCch----hhhHHHHHHHHHHHHhCCC-
Confidence 467899999999998764431 1223344455567899 5788999999873 1111122334445555565
Q ss_pred CceeeEeecCCCCCCccc
Q psy13961 185 PATVAFVPISGWHGDNML 202 (459)
Q Consensus 185 ~~~~~~i~iSa~~g~~i~ 202 (459)
+++++||.++.|+.
T Consensus 152 ----~v~~~sa~~~~g~~ 165 (307)
T 1t9h_A 152 ----DVYLTSSKDQDSLA 165 (307)
T ss_dssp ----CEEECCHHHHTTCT
T ss_pred ----eEEEEecCCCCCHH
Confidence 57899999988863
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.60 E-value=0.00023 Score=71.86 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+...++++|..|||||||++.|..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345789999999999999999964
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.55 E-value=0.00024 Score=70.80 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=39.2
Q ss_pred CCEEEEEEeCCCccch----HhHHH--HhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHH-HcCCceEEEEEEcc
Q psy13961 83 SKFYVTIIDAPGHRDF----IKNMI--TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGVNKM 155 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~----~~~~~--~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~-~~~ip~iivviNK~ 155 (459)
.++.+.||||||.... ...+. ..+..+|.++||+|+..+. .....+.... .+++- -|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---------~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---------EALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---------HHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---------HHHHHHHHHHhcCCce--EEEEeCc
Confidence 5678999999996543 22221 2233689999999997541 2222222222 34443 4567999
Q ss_pred CCCC
Q psy13961 156 DSTE 159 (459)
Q Consensus 156 D~~~ 159 (459)
|...
T Consensus 248 D~~~ 251 (425)
T 2ffh_A 248 DGDA 251 (425)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9753
No 239
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.54 E-value=3e-05 Score=72.42 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+++++|.+|+|||||+++|+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 5899999999999999999974
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.49 E-value=0.00053 Score=65.85 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
++...|+++|+.|+||||++..|..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.47 E-value=0.00064 Score=64.78 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+.-.|+++|+.|||||||++.|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999743
No 242
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.44 E-value=0.00034 Score=73.31 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.|+++|+.|||||||++.|+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 499999999999999999974
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.39 E-value=0.00098 Score=59.17 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=45.5
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC-----CceEEEEEEccCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG-----VKQLIVGVNKMDST 158 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~-----ip~iivviNK~D~~ 158 (459)
.+.+.|+|||+... ..+...+..+|.+|+++..+... . .+...+..++..+ ++ +.+++|+.|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-F-------SAAGSVVTVLEAQAYSRKVE-ARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-H-------HHHHHHHHHHTTSCGGGCCE-EEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-H-------HHHHHHHHHHHHHHhCCCCc-EEEEEeccCCC
Confidence 57899999998753 44556677899999999887542 2 4555555555443 55 57889999964
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.34 E-value=0.00091 Score=63.72 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...|+++|+.|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4467899999999999999999643
No 245
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.28 E-value=0.00059 Score=70.03 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=82.7
Q ss_pred hhHHHhccccCCCCCCCCCCeeEEeEEEEEeCC---ceeEEEEEEEeeeEecCCeEEEecCCe---EEEEEEEEeccccc
Q psy13961 226 KCLIEALDAILPPSRPTEKPLRLPLQDVYKIGG---IGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEAL 299 (459)
Q Consensus 226 ~~Ll~~l~~~~~~~~~~~~p~~~~i~~v~~~~~---~G~v~~G~v~sG~l~~gd~v~~~p~~~---~~~V~~I~~~~~~v 299 (459)
+++-+++..+++|.....-.-+.-|..+|+++. .|.|+.++|..|+++.|..+.+...+. ..++.|+..+...+
T Consensus 428 ~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v 507 (537)
T 3izy_P 428 EDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDT 507 (537)
T ss_dssp HHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCC
T ss_pred HHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCccc
Confidence 566667777777765544445778889999874 578999999999999999999999874 55778888899999
Q ss_pred eeEcCCCeEEEEEccCcccCcceeEEEc
Q psy13961 300 QEAVPGDNVGFNVKNVSVKELRRGFVAG 327 (459)
Q Consensus 300 ~~a~aGd~v~l~l~~~~~~~i~~G~vl~ 327 (459)
.++..|.-|++.+.+ ...+++.||+|-
T Consensus 508 ~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 508 SVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp SEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred ceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 999999999999887 135899999983
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.13 E-value=0.0011 Score=63.00 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+...|+++|+.|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999964
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.97 E-value=0.0014 Score=65.49 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.+...|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45667899999999999999999864
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.97 E-value=0.0021 Score=60.92 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++++|+.|+||||++..|..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999864
No 249
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.91 E-value=0.0028 Score=61.51 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=62.0
Q ss_pred hcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHhhhhhcCcCC
Q psy13961 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP 185 (459)
Q Consensus 106 ~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 185 (459)
+..+|.+++| +|....+. . ....+.+..+...++| .++|+||+|++++ ...+. .++....+...|+
T Consensus 128 ~anvD~v~iv-~a~~P~~~--~---~~i~r~L~~a~~~~~~-~iivlNK~DL~~~----~~~~~-~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELS--L---NIIDRYLVGCETLQVE-PLIVLNKIDLLDD----EGMDF-VNEQMDIYRNIGY-- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTCC--H---HHHHHHHHHHHHHTCE-EEEEEECGGGCCH----HHHHH-HHHHHHHHHTTTC--
T ss_pred HhcCCEEEEE-EeCCCCCC--H---HHHHHHHHHHHhcCCC-EEEEEECccCCCc----hhHHH-HHHHHHHHHhCCC--
Confidence 4678999876 44443221 0 1233344555678999 5788999999862 11111 2223334455565
Q ss_pred ceeeEeecCCCCCCccccccCCCCCccccccccccCCCCh-hhHHHhccccCC
Q psy13961 186 ATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADG-KCLIEALDAILP 237 (459)
Q Consensus 186 ~~~~~i~iSa~~g~~i~~~~~~~~w~~~~~~~~~~~~~~g-~~Ll~~l~~~~~ 237 (459)
+++++|+.++.|+..... +..|......-.++.| .+|+..|.....
T Consensus 194 ---~v~~~Sa~~~~gl~~L~~---~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKPLEE---ALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp ---CEEECBTTTTBTHHHHHH---HHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred ---cEEEEecCCCcCHHHHHH---hcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 478999999988744321 1222111111113344 578888876554
No 250
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.75 E-value=0.0072 Score=62.88 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=68.4
Q ss_pred CeeEEeE--EEEEeCCceeEEEEEEEeeeEecCCeEEEecCC-eEEEEEEEEeccccceeEcCCCeEEEEEccCc-ccCc
Q psy13961 245 PLRLPLQ--DVYKIGGIGTVPVGRVETGVIKPGMLVTFAPAN-LTTEVKSVEMHHEALQEAVPGDNVGFNVKNVS-VKEL 320 (459)
Q Consensus 245 p~~~~i~--~v~~~~~~G~v~~G~v~sG~l~~gd~v~~~p~~-~~~~V~~I~~~~~~v~~a~aGd~v~l~l~~~~-~~~i 320 (459)
|..+-|. .+|+.+. |.|+.++|..|+|+.|..+.+ +.+ ...+|.||+.+..++++|..|+-|++.+.+.. -.++
T Consensus 463 ~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 4444444 6999877 899999999999999999998 555 56789999999999999999999999998732 2689
Q ss_pred ceeEEEcc
Q psy13961 321 RRGFVAGD 328 (459)
Q Consensus 321 ~~G~vl~~ 328 (459)
+.||+|-.
T Consensus 541 ~~~d~~~~ 548 (594)
T 1g7s_A 541 HEGDTLYV 548 (594)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999853
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.72 E-value=0.014 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+.-.++++|+.|||||||++.|...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999753
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0084 Score=58.26 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+.-.++++|+.|||||||++.|...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457899999999999999999753
No 253
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.02 E-value=0.0017 Score=61.71 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++++|++|+|||||++.|+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 34789999999999999999963
No 254
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.82 E-value=0.034 Score=52.60 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=41.2
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH----cCCceEEEEEEccCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT----LGVKQLIVGVNKMDS 157 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~----~~ip~iivviNK~D~ 157 (459)
..+.+.|||||+..... .+...+..+|.+|+|+.++..... .+...+..++. .+++.+-+|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIY-------AMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHH-------HHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHH-------HHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999854321 223456789999999987532111 33334444443 345533378899984
No 255
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.79 E-value=0.032 Score=51.56 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC--CceEEEEEEccCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG--VKQLIVGVNKMDST 158 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~--ip~iivviNK~D~~ 158 (459)
..+.+.|||||+.... .+...+..+|.+|+++..+..... .....+..+...+ .+ +.+++|+.+..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~-------~~~~~~~~l~~~~~~~~-~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVE-------SLDLFNFFVRKLNLFLP-IFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHH-------HHHHHHHHHHTTTCCCC-EEEEEEEECTT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHH-------HHHHHHHHHHHHhccCC-EEEEEecccCc
Confidence 4578999999986533 345556679999999998653221 3334445555553 45 67889999543
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.64 E-value=0.0067 Score=53.01 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 3 KEKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 3 ~~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.-.+...++++|++|||||||++.|...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3344567999999999999999999643
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.57 E-value=0.0071 Score=53.52 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
+...|+++|++|||||||+..|....|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4467999999999999999999765443
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.53 E-value=0.0058 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...++++|+.|||||||++.|+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999754
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.32 E-value=0.0086 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHhHHHHhc
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+++++|+.|||||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997543
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.011 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999754
No 261
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.06 E-value=0.018 Score=50.03 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
|++.+ ...|++.|.+||||||+...|....+
T Consensus 1 m~~~~-~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 1 MEKSK-PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCCC-CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCc-CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56554 35799999999999999999976554
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.02 E-value=0.014 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|+++|+.|||||||++.|...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999754
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.98 E-value=0.015 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.+...|+|+|+.|||||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998653
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.97 E-value=0.013 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|+++|++|||||||...|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.95 E-value=0.018 Score=49.45 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
++...|+++|++|||||||+..|....|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3456899999999999999999975444
No 266
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.94 E-value=0.0082 Score=60.79 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
....|+++|.+||||||+..+|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999643
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.87 E-value=0.016 Score=51.04 Aligned_cols=30 Identities=40% Similarity=0.454 Sum_probs=22.5
Q ss_pred CCC-CCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 1 MGK-EKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 1 ~~~-~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
|+. ++....|+++|.+||||||+...|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 444 334568999999999999999999765
No 268
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.87 E-value=0.016 Score=52.34 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCCCceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 1 ~~~~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
|....+...|+++|.+||||||+...|....+.
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 444445578999999999999999999766543
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.86 E-value=0.015 Score=51.36 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...++++|+.|||||||++.|...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457899999999999999999754
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.78 E-value=0.014 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.++++|+.|||||||++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999754
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.019 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...|+++|+.|+|||||++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44578999999999999999998654
No 272
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.62 E-value=0.019 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+..-|+++|++|||||||++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999997654
No 273
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.59 E-value=0.023 Score=49.20 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
....|+++|.+||||||+...|....+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976544
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.022 Score=49.65 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...|++.|.+||||||+...|....+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999976554
No 275
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.56 E-value=0.017 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
-.++++|+.|||||||++.|....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999997543
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.53 E-value=0.023 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|+++|++||||||+.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976544
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.48 E-value=0.018 Score=49.60 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
-.++++|+.|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999864
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.47 E-value=0.025 Score=49.99 Aligned_cols=28 Identities=25% Similarity=0.056 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
+...|++.|.+||||||+...|....+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999999765443
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.46 E-value=0.021 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...|+++|++|||||||++.|...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999753
No 280
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.45 E-value=0.024 Score=51.88 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGI 34 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i 34 (459)
...|+++|+.|||||||++.|....+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4589999999999999999998655544
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.45 E-value=0.023 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.|+++|.+||||||+...|....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975543
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.028 Score=48.90 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
....|+++|.+||||||+...|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999976544
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.41 E-value=0.019 Score=51.65 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...++++|+.|||||||++.|...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999754
No 284
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.38 E-value=0.022 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...++++|+.|||||||++.|+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34578999999999999999997643
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.34 E-value=0.024 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
..|+++|++||||||+...| ...+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 46899999999999999999 55443
No 286
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.32 E-value=0.14 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+...|+|+|...+|||+|+|.|+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 4567889999999999999998864
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.28 E-value=0.028 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
..|+++|.+||||||+...|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999997654
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.27 E-value=0.025 Score=49.86 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|+++|.+|||||||...|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.24 E-value=0.026 Score=48.86 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..+|+++|.+||||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999976544
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.23 E-value=0.025 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|++.|.+||||||+...|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999754
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.17 E-value=0.032 Score=51.03 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=24.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
++..+|++.|.+||||||+...|....+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45679999999999999999999765443
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.16 E-value=0.029 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+..+|+++|++||||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999976554
No 293
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.13 E-value=0.028 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...|+++|++|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34578999999999999999997654
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.10 E-value=0.031 Score=48.25 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=23.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...+|+++|.+||||||+...|....+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999975543
No 295
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.09 E-value=0.14 Score=46.89 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=47.0
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.+.|||||+... ......+..+|.+|+|+.++..... .+...+..+...+.+.+-+++|+.|...
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSIT-------DGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHH-------HHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHH-------HHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 57899999998644 4455567789999999987643211 4445555666667776778899999653
No 296
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.08 E-value=0.025 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
...|++.|.+||||||+...|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999976544
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.00 E-value=0.031 Score=49.83 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
+|++.|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999765543
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.99 E-value=0.033 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|++|||||||++.|...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 36899999999999999999753
No 299
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.98 E-value=0.081 Score=48.76 Aligned_cols=68 Identities=10% Similarity=-0.050 Sum_probs=44.8
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
..+.+.|||||+...........+..+|.+|+|+........ .+...+..++..+++.+-+++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAV-------IVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHH-------HHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHH-------HHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 567899999998654322222223368999999987654221 44555666777788844388899874
No 300
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.98 E-value=0.039 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|+++|.+|||||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
No 301
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.97 E-value=1.4 Score=42.25 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=44.8
Q ss_pred cCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC--CCCcHHHHHHHHHHHHhhhhhcCcCCc
Q psy13961 109 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE--PPYSEARFEEIKKEVSGYIKKIGYNPA 186 (459)
Q Consensus 109 aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~i~~~l~~~l~~~g~~~~ 186 (459)
.+.+++|.-....... .++..+..++..++|..-+|+|++.... ++|...+.+.....+.++.+.++. .
T Consensus 237 ~~~~vlV~~p~~~~~~-------e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~ 307 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSIL-------ESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGD--K 307 (349)
T ss_dssp TEEEEEEECSSHHHHH-------HHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTT--S
T ss_pred CceEEEEECCCccHHH-------HHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCC--C
Confidence 3677887766432221 6777888889999997678899998652 223333333333344444444332 2
Q ss_pred eeeEeecCCC
Q psy13961 187 TVAFVPISGW 196 (459)
Q Consensus 187 ~~~~i~iSa~ 196 (459)
.+-.+|....
T Consensus 308 ~l~~iPl~~~ 317 (349)
T 3ug7_A 308 VIAYVPLLRT 317 (349)
T ss_dssp EEEEEECCSS
T ss_pred cEEEecCCCC
Confidence 3344555443
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.97 E-value=0.029 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHhHHHHhc
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
|+++|++|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999998553
No 303
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.95 E-value=0.037 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.-.++++|+.|||||||++.|....
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999997543
No 304
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.91 E-value=0.028 Score=54.48 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|+.|+|||||++.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999999974
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.90 E-value=0.031 Score=48.01 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..|++.|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999975
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.89 E-value=0.034 Score=49.81 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=23.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
++..+|+++|.+||||||+...|....+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999765543
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.89 E-value=0.036 Score=49.35 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
+|+++|.+||||||+...|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999765543
No 308
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.88 E-value=0.034 Score=50.54 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
..+.+.|||||+.... .+...+..+|.+|+|+.++..... .......++..++++.+.+++||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~-------~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIK-------TGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHH-------HHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHH-------HHHHHHHHHHHcCCccEEEEEeCCC
Confidence 5678999999986543 344556789999999988643221 3444555667788887888999998
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.88 E-value=0.034 Score=48.79 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.|++.|.+||||||+...|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999976544
No 310
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.88 E-value=0.06 Score=48.58 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
..+.+.|+|||+... ..+...+..+|.+|+|+..+..... .+...+..+...+.+.+-+++||.|...
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLT-------DTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHH-------HHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHH-------HHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 347899999998654 3455667889999999987643221 4455556666678776778899999654
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.85 E-value=0.037 Score=48.23 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...|+++|.+||||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976554
No 312
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.82 E-value=0.029 Score=51.04 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999995
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.80 E-value=0.033 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...|++.|.+||||||++..|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999997654
No 314
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.76 E-value=0.033 Score=50.28 Aligned_cols=20 Identities=40% Similarity=0.308 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999985
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.72 E-value=0.033 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+|+++|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999975
No 316
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.72 E-value=0.039 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++++|+.|||||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.70 E-value=0.042 Score=52.27 Aligned_cols=26 Identities=38% Similarity=0.267 Sum_probs=22.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|+|+|+.|||||||++.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45568999999999999999998753
No 318
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.68 E-value=0.028 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=18.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...|++.|.+||||||+...|....+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999965443
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.67 E-value=0.035 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.-.++|+|+.|||||||++.|+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 357899999999999999999754
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.67 E-value=0.04 Score=48.77 Aligned_cols=26 Identities=38% Similarity=0.264 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+....|++.|.+||||||+...|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999653
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.66 E-value=0.036 Score=47.57 Aligned_cols=24 Identities=46% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+|+++|.+||||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999976554
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.63 E-value=0.04 Score=50.37 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=22.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...|+++|+.|||||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999976544
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.63 E-value=0.048 Score=48.01 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.0
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
+....|++.|.+||||||+...|....+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34568999999999999999999866553
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.59 E-value=0.037 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..|+++|++||||||+...|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999964
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.59 E-value=0.048 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+..+|+++|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999765
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.56 E-value=0.042 Score=50.50 Aligned_cols=28 Identities=25% Similarity=0.071 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCCC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGGI 34 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~i 34 (459)
...|+++|+.|||||||+..|....|..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3589999999999999999998655543
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.54 E-value=0.041 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.198 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...|+++|++|||||||...|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998643
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.45 E-value=0.039 Score=50.38 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999963
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.44 E-value=0.035 Score=50.58 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999995
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.43 E-value=0.049 Score=47.90 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.....|+++|.+||||||+...|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999976544
No 331
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.42 E-value=0.038 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
..++++|+.|+|||||++.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.41 E-value=0.045 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|++.|.+||||||++..|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999976543
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.40 E-value=0.035 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999964
No 334
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.39 E-value=0.047 Score=50.55 Aligned_cols=24 Identities=42% Similarity=0.396 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+.-.++++|+.|||||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345789999999999999999974
No 335
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.38 E-value=0.023 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|+.|||||||+..|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.37 E-value=0.046 Score=52.17 Aligned_cols=27 Identities=37% Similarity=0.270 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+.+..|+++|+.|||||||+..|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445689999999999999999986543
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.32 E-value=0.047 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++++|+.|||||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999974
No 338
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.28 E-value=0.04 Score=48.32 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|+|||||++.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999974
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.27 E-value=0.041 Score=49.81 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67999999999999999995
No 340
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.27 E-value=0.067 Score=47.98 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=23.3
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
++...|.++|++||||+|....|....+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 34456788999999999999999866544
No 341
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.22 E-value=0.042 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999963
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.053 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|+++|.+||||||+...|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999643
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.20 E-value=0.043 Score=47.97 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
...|+++|.+||||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976654
No 344
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.19 E-value=0.043 Score=50.94 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999996
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.16 E-value=0.052 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.++...|+|+|++|||||||++.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999988643
No 346
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.14 E-value=0.055 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+|++.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976554
No 347
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.13 E-value=0.044 Score=51.15 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999996
No 348
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.11 E-value=0.045 Score=50.22 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999963
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.10 E-value=0.043 Score=49.19 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999995
No 350
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.10 E-value=0.045 Score=50.54 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999995
No 351
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.05 E-value=0.046 Score=50.64 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999995
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.05 E-value=0.049 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999964
No 353
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.04 E-value=0.03 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.5
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
..++++|+.|||||||++.|.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.01 E-value=0.059 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+...|+++|..|||||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999865
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.00 E-value=0.055 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...|++.|..||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.99 E-value=0.046 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
-.++++|+.|||||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 357
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.98 E-value=0.048 Score=49.76 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999995
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.98 E-value=0.053 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
...|+++|.+||||||+...|....+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999866553
No 359
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.98 E-value=0.048 Score=50.45 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999963
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.92 E-value=0.061 Score=45.61 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+|++.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976544
No 361
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.91 E-value=0.05 Score=50.43 Aligned_cols=20 Identities=50% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 68999999999999999985
No 362
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.86 E-value=0.06 Score=48.83 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
.+..|++.|++||||||+...|....+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999999765543
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.85 E-value=0.062 Score=47.79 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCCC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGGI 34 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~i 34 (459)
+|+++|++||||+|....|....+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 68999999999999999998665543
No 364
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.81 E-value=0.34 Score=44.32 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH---cCCceEEEEEEccCCCC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT---LGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~---~~ip~iivviNK~D~~~ 159 (459)
..+.+.|||||+..... +...+..+|.+|+++.++..... +. ....+.+..++. .+++.+-+++|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~-~~---~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALE-GV---AGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHH-HH---HHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHH-HH---HHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 56789999999865432 34456679999999998643211 00 012222222221 24562237789998643
No 365
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.81 E-value=0.053 Score=49.81 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999995
No 366
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.80 E-value=0.055 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999963
No 367
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.78 E-value=0.055 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||+..|..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 368
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.78 E-value=0.053 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999995
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.75 E-value=0.068 Score=47.75 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..+|+++|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999976554
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.73 E-value=0.071 Score=48.85 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
....|+|.|.+||||||+...|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 356899999999999999999976555
No 371
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.71 E-value=0.055 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999999963
No 372
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.68 E-value=0.054 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|+.|+|||||++.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3689999999999999999964
No 373
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.67 E-value=0.33 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..-|+++|.+||||||+..+|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999643
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.65 E-value=0.075 Score=50.42 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=22.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.+...|+++|+.|||||||++.|....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999997643
No 375
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.60 E-value=0.058 Score=50.06 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999985
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.58 E-value=0.063 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.9
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+....|+++|++||||||+...|....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999997554
No 377
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.58 E-value=0.058 Score=50.44 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999996
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.57 E-value=0.076 Score=49.83 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
....|+++|++|||||||...|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 379
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.53 E-value=0.06 Score=49.56 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll 28 (459)
.++++|+.|||||||++.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999995
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.49 E-value=0.086 Score=46.28 Aligned_cols=27 Identities=41% Similarity=0.522 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.+..|+++|.+||||||+.+.|....|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999976533
No 381
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.47 E-value=0.075 Score=45.13 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
-+|++.|.+||||||+...|....+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999976544
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.39 E-value=0.074 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+...|+++|..||||||+...|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999864
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.34 E-value=0.061 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999974
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.29 E-value=0.07 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.|++.|.+||||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 385
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.28 E-value=0.066 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
...++++|++|+|||||+..+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999964
No 386
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.22 E-value=0.074 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999974
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.21 E-value=0.06 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-.++++|+.|||||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999743
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.19 E-value=0.084 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.|++.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999975544
No 389
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.18 E-value=0.24 Score=46.39 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=48.3
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.+.|||||..-... .....+..+|.+|+|+.+...... ...+.+..+...+.+.+-+|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~-------~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLK-------EVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHH-------HHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHH-------HHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 3578999999865432 223334679999999998754322 5566677778888886678899999754
No 390
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.18 E-value=0.042 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4689999999999999999863
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.10 E-value=0.084 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...++++|..|||||||++.|+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456789999999999999999853
No 392
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.10 E-value=0.079 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...|+++|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999643
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.10 E-value=0.072 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+|+++|.+||||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999976544
No 394
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.10 E-value=0.073 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999963
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.08 E-value=0.046 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.|++.|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999643
No 396
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.06 E-value=0.077 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|++.|.+||||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999976544
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.03 E-value=0.08 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++...|++.|..|||||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999754
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.99 E-value=0.095 Score=47.34 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
...+|+++|.+||||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999976554
No 399
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.97 E-value=0.08 Score=49.76 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll 28 (459)
-.++++|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999995
No 400
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.91 E-value=0.075 Score=51.58 Aligned_cols=21 Identities=33% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 579999999999999999963
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.91 E-value=0.1 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..+|+|+.|||||||+.+|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999976544
No 402
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.89 E-value=0.11 Score=46.03 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=45.2
Q ss_pred CCEEEEEEeCCCc-cchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHc-CCceEEEEEEccCCC
Q psy13961 83 SKFYVTIIDAPGH-RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL-GVKQLIVGVNKMDST 158 (459)
Q Consensus 83 ~~~~~~liDtpG~-~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~-~ip~iivviNK~D~~ 158 (459)
..+.+.|+|||+. ... .+...+..+|.+|+++..+..... .+...+..++.. +.+ +.+++|+.|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~-------~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALD-------ALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHH-------HHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHH-------HHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4578999999986 432 344556789999999987643221 344455555553 667 77889999965
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.88 E-value=0.1 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999976544
No 404
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.88 E-value=0.1 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.|+++|++|||||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999975543
No 405
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.84 E-value=0.08 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|++|+|||||+..+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 406
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.82 E-value=0.094 Score=51.18 Aligned_cols=24 Identities=42% Similarity=0.396 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+.-.++++|+.|||||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999974
No 407
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.80 E-value=0.085 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHHh
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.|++.|..||||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.79 E-value=0.1 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLI 28 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll 28 (459)
....|++.|.+||||||+...|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999996
No 409
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.73 E-value=0.071 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
..+++++|+.|||||||++.|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997553
No 410
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.67 E-value=0.087 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 579999999999999999963
No 411
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.67 E-value=0.13 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=22.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+....|+|+|+++||||||...|....+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3345689999999999999999976543
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.57 E-value=0.11 Score=46.88 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.6
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
++...|+++|.+||||||+...|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4456899999999999999999976554
No 413
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.55 E-value=0.25 Score=45.84 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.5
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.+.|||||+..... .....+..+|.+|+|+.+...... ...+.+..+...+.+.+-+|+|+.|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~-------~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKD-------EVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHH-------HHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHH-------HHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3679999999864432 222234568999999998754222 4555666677778884448899999754
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.53 E-value=0.095 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
..+|+++|++||||||+...|....+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999765443
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.45 E-value=0.14 Score=46.22 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=23.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
++...|++.|.+||||||++..|....+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999976543
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.31 E-value=0.085 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+++++|+.|||||||++.|+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999974
No 417
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.22 E-value=0.097 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 579999999999999999963
No 418
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.16 E-value=0.46 Score=44.36 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHH------cCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT------LGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~------~~ip~iivviNK~D 156 (459)
..+.+.|||||+..... ....+..+|.+|+++.++..... .....+..+.. .+++.+-+++|+.|
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTN-------NIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHH-------HHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHH-------HHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 34789999999875542 23445579999999988653221 22333333332 25664457789999
Q ss_pred CCC
Q psy13961 157 STE 159 (459)
Q Consensus 157 ~~~ 159 (459)
...
T Consensus 224 ~~~ 226 (298)
T 2oze_A 224 TDS 226 (298)
T ss_dssp TTC
T ss_pred CCc
Confidence 753
No 419
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.13 E-value=0.1 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 579999999999999999963
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.04 E-value=0.14 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhcC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.|++.|.+||||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999976544
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.98 E-value=0.13 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
+...|+++|.+||||||+...|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 422
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.97 E-value=0.11 Score=50.81 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 579999999999999999963
No 423
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.95 E-value=0.11 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 579999999999999999963
No 424
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.86 E-value=0.13 Score=50.95 Aligned_cols=24 Identities=42% Similarity=0.333 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.-.++++|+.|||||||++.|+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999754
No 425
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.83 E-value=0.11 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 579999999999999999963
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.83 E-value=0.14 Score=46.14 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=22.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
.+.+++++|.+||||||+...|....+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999976554
No 427
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.77 E-value=0.11 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 579999999999999999963
No 428
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.76 E-value=0.18 Score=45.50 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=46.2
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcC--CceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG--VKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~--ip~iivviNK~D~~~ 159 (459)
.+.+.|||||+.... .....+..+|.+|+++..+..... .+...+..++..+ .+.+-+++|+.|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLR-------RAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHH-------HHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHH-------HHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 468999999986533 344567789999999987643221 4455566666666 444778899998654
No 429
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.53 E-value=0.4 Score=45.07 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=47.6
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCCCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 159 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~~~ 159 (459)
.+.+.|||||+.-.... .......+|.+|+|+.+...... +..+.+..+...+++.+-+|+|+.|...
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~-------~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAK-------EVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTT-------HHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHH-------HHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 35799999998654322 22234679999999998755322 6677777777788874447789999653
No 430
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.37 E-value=0.14 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|++|+|||||+..|..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
No 431
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.30 E-value=0.15 Score=47.32 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
..++++|++|+|||||++.|....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999999999997543
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.27 E-value=0.14 Score=42.74 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhc
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
-.+|+|+.|+|||||+.+|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999997643
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.25 E-value=0.15 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999999863
No 434
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.21 E-value=0.73 Score=41.31 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.2
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.-+.+.|++|+||||++-+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4567889999999998877764
No 435
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.13 Score=51.59 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999974
No 436
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.06 E-value=0.16 Score=45.14 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
...|+++|.+||||||+...|....+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999976544
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.00 E-value=0.22 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
..|+++|+++||||||...|....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999997554
No 438
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.87 E-value=0.097 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 589999999999999999963
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.84 E-value=0.095 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=19.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
+...|+|.|+.||||||+.+.|....+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999976433
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.72 E-value=0.21 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...++++|++|+|||||+..|...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999753
No 441
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.56 E-value=0.18 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
--++++|++|+|||||+..|..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999864
No 442
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.54 E-value=0.2 Score=45.77 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++++|++|+|||||+..+...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999754
No 443
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.41 E-value=0.84 Score=47.28 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHhcCCCChHHHHHHHHHHHHhCCCcceeeeeccCchhHHhcCceEEeeeeEEe--
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-- 81 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-- 81 (459)
.+....+.+.|..|+||||+.-.|. ....+.|+.-.-...-. .......-|.........+.
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA---------------~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~~ 68 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATA---------------IRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIASV 68 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHH---------------HHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTTS
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHH---------------HHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCCceeccc
Q ss_pred ----------------------------------------------------------------eCCEEEEEEeCC--Cc
Q psy13961 82 ----------------------------------------------------------------TSKFYVTIIDAP--GH 95 (459)
Q Consensus 82 ----------------------------------------------------------------~~~~~~~liDtp--G~ 95 (459)
...+.+.++||| ||
T Consensus 69 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~ 148 (589)
T 1ihu_A 69 PGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGH 148 (589)
T ss_dssp TTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHH
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchh
Q ss_pred c----------------------------------chHhHHHHhhcc--cCEEEEEEECCCCceeccccCCCchHHHHHH
Q psy13961 96 R----------------------------------DFIKNMITGTSQ--ADCAVLIVAAGTGEFEAGISKNGQTREHALL 139 (459)
Q Consensus 96 ~----------------------------------~~~~~~~~~~~~--aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~ 139 (459)
. +........+.. .+.+++|+.+...... .+...+..
T Consensus 149 ~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~-------~~~~~~~~ 221 (589)
T 1ihu_A 149 TIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQ-------EVARTHLE 221 (589)
T ss_dssp HHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHH-------HHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHH-------HHHHHHHH
Q ss_pred HHHcCCceEEEEEEccCCCCC----CCcHHHHHHHHHHHHhh
Q psy13961 140 AFTLGVKQLIVGVNKMDSTEP----PYSEARFEEIKKEVSGY 177 (459)
Q Consensus 140 ~~~~~ip~iivviNK~D~~~~----~~~~~~~~~i~~~l~~~ 177 (459)
+...|++..-+|+|+++-... .|.+.++....+.+..+
T Consensus 222 L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (589)
T 1ihu_A 222 LAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANL 263 (589)
T ss_dssp HHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHH
No 444
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.40 E-value=0.23 Score=42.39 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...+.+.|++|+|||||+..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999643
No 445
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.32 E-value=0.2 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred CceeEEEEEecCCCChHHHHhHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHL 27 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~L 27 (459)
+...+|.++|..+||||||+.+|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999999998
No 446
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.29 E-value=0.21 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-+++++|+.|+|||||++.|...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999754
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.25 E-value=0.2 Score=47.03 Aligned_cols=23 Identities=43% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..|+++|.+||||||+...|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999753
No 448
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.18 E-value=0.2 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.04 E-value=0.23 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.4
Q ss_pred CceeEEEEEecCCCChHHHHhHHHH
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
++--.++++|+.|||||||++.|..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445789999999999999999964
No 450
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.03 E-value=0.3 Score=44.47 Aligned_cols=65 Identities=9% Similarity=0.099 Sum_probs=42.1
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCC--------ceEEEEEEcc
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--------KQLIVGVNKM 155 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~i--------p~iivviNK~ 155 (459)
.+.+.|+|||+... ..+...+..+|.+|+|++++..... .+...+..+...+. ..+-+++|+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVR-------DSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHH-------HHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHH-------HHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 67899999998544 3455667789999999988643111 23333444433331 3467888998
Q ss_pred CC
Q psy13961 156 DS 157 (459)
Q Consensus 156 D~ 157 (459)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 84
No 451
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.99 E-value=0.098 Score=50.62 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 579999999999999999963
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.92 E-value=0.17 Score=46.49 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...|++.|..||||||+++.|....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999997554
No 453
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.84 E-value=0.42 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+.+.|++|+|||||+.++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999964
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.74 E-value=0.27 Score=44.90 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...+.+.|++|+|||||+..|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 455
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.71 E-value=0.21 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|++|+|||||+..|..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999999975
No 456
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.70 E-value=0.21 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEecCCCChHHHHhHHHHh
Q psy13961 10 IVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 10 v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.+++|+.|||||||++++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999755
No 457
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.54 E-value=0.29 Score=46.25 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
...|+|+|+++||||||...|....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3468999999999999999997554
No 458
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.54 E-value=0.58 Score=43.56 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.6
Q ss_pred CEEEEEEeCCCccchHhHHHHhhcccCEEEEEEECCC
Q psy13961 84 KFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120 (459)
Q Consensus 84 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvda~~ 120 (459)
.+.+.|||||+.. ...+...+..+|.+|+++..+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999875 3445667788999999998864
No 459
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.48 E-value=0.25 Score=45.76 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHHhc
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
.++++|++|+|||||+..|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999997543
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.40 E-value=0.23 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-.++++|+.|||||||++.|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999753
No 461
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.20 E-value=0.22 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999999964
No 462
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.18 E-value=0.26 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHhc
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
-.++++|++|+|||||+..+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999997654
No 463
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=87.95 E-value=13 Score=33.64 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=39.0
Q ss_pred CCEEEEEEeCCCcc-----ch-HhHHHHhhcccCEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccC
Q psy13961 83 SKFYVTIIDAPGHR-----DF-IKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156 (459)
Q Consensus 83 ~~~~~~liDtpG~~-----~~-~~~~~~~~~~aD~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D 156 (459)
..+.+.+||.||-- +. ..+..-......-+|||+|+..+... ++...+..+...+++-.=+++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~-------~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLN-------HTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHH-------HHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHH-------HHHHHHHHHHhCCCCEEEEEEECCC
Confidence 35679999999731 11 11111111223557899998765322 4444555566778885557789984
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.95 E-value=0.25 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999974
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.92 E-value=0.29 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
-+++++|+.|+|||||++.|...
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999754
No 466
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.84 E-value=0.25 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999964
No 467
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.71 E-value=0.27 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=19.1
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
++..-|++.|..||||||+++.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999643
No 468
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.55 E-value=3.5 Score=38.95 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+.+.|++++|||||+-+++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988864
No 469
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.45 E-value=0.35 Score=41.48 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.-|.+.|++|+|||||.-.|+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999974
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.45 E-value=0.2 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4689999999999999999864
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.43 E-value=0.33 Score=44.03 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=21.7
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
.++..-|++.|..||||||++..|...
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999999999998643
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.43 E-value=0.35 Score=46.20 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHhcC
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYKCG 32 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~~~ 32 (459)
..|+|+|++++|||||...|....+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4799999999999999999975543
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.42 E-value=0.3 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..++++|++|+|||||+..|..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.38 E-value=0.34 Score=42.31 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..+.+.|++|+|||||+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.37 E-value=0.34 Score=43.78 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
...|++.|..||||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999997654
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.34 E-value=0.35 Score=42.53 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
..|+++|++++|||||...|..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999964
No 477
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.21 E-value=0.29 Score=41.64 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHh
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..++.+.|++|+|||||+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998643
No 478
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.15 E-value=0.35 Score=43.18 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
....+.+.|++|+|||||+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999964
No 479
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.06 E-value=0.24 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999964
No 480
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.96 E-value=0.23 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999963
No 481
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.75 E-value=1.8 Score=38.24 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=39.9
Q ss_pred CCEEEEEEeCCCccc--hHh--HHHHhhccc-CEEEEEEECCCCceeccccCCCchHHHHHHHHHcCCceEEEEEEccCC
Q psy13961 83 SKFYVTIIDAPGHRD--FIK--NMITGTSQA-DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDS 157 (459)
Q Consensus 83 ~~~~~~liDtpG~~~--~~~--~~~~~~~~a-D~~ilVvda~~g~~~~~~~~~~qt~e~~~~~~~~~ip~iivviNK~D~ 157 (459)
.++.+.||||||.-. ... .....+... +.+|+|+.+..+... ++...+..++..+++..-+++|+.|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~-------~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCIN-------HAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHH-------HHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHH-------HHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 457899999997532 110 111111222 347888877543221 45555566666788744477899986
Q ss_pred C
Q psy13961 158 T 158 (459)
Q Consensus 158 ~ 158 (459)
.
T Consensus 180 ~ 180 (224)
T 1byi_A 180 P 180 (224)
T ss_dssp C
T ss_pred c
Confidence 4
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.63 E-value=0.33 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4689999999999999999974
No 483
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.60 E-value=0.33 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999964
No 484
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.59 E-value=1.8 Score=41.89 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.+.|.|++++|||||+-++..
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 577899999999999999864
No 485
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.58 E-value=0.25 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|+.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999864
No 486
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.43 E-value=0.56 Score=43.90 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.5
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+.++.+.+.|++|+|||+|+.++....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445678888999999999999997654
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.27 E-value=0.41 Score=43.00 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|++|+|||||+.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999888864
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.26 E-value=0.37 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHh
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
..+.+.|++|+||||++.+|...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 489
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.12 E-value=0.35 Score=42.66 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHhHHHHhcCC
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIYKCGG 33 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~~~~~ 33 (459)
-.+|+|+.|+|||||+.+|.+..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4578999999999999999765543
No 490
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.12 E-value=0.35 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999963
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.06 E-value=0.42 Score=45.97 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
...+|+++|++|+||||+...|...
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999988643
No 492
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.01 E-value=0.35 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q psy13961 8 INIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 8 ~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
-.++++|+.|||||||++.|..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4689999999999999999964
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.70 E-value=0.46 Score=42.26 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=21.7
Q ss_pred CceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 5 KTHINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 5 k~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
|+..-|++.|..||||||++..|...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45578999999999999999999643
No 494
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.69 E-value=0.6 Score=43.70 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCceeEEEEEecCCCChHHHHhHHHH
Q psy13961 4 EKTHINIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 4 ~k~~~~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++..++.+.|++|+|||+|+..+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998854
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.67 E-value=0.39 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q psy13961 9 NIVVIGHVDSGKSTTTGHLIY 29 (459)
Q Consensus 9 ~v~v~G~~~~GKSTLi~~Ll~ 29 (459)
.++++|+.|||||||++.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999964
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.60 E-value=0.54 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 7 HINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 7 ~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
...|+|+|++++|||||...|....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3468999999999999999997544
No 497
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.46 E-value=0.51 Score=44.29 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHhc
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYKC 31 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~~ 31 (459)
+...|.+.|++|+|||||+.++....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45679999999999999999997544
No 498
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.46 E-value=0.52 Score=43.94 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...+.+.|++|+|||||+..+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999654
No 499
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.22 E-value=0.56 Score=43.36 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
+...+.+.|++|+|||||+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999654
No 500
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.01 E-value=0.55 Score=42.65 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHh
Q psy13961 6 THINIVVIGHVDSGKSTTTGHLIYK 30 (459)
Q Consensus 6 ~~~~v~v~G~~~~GKSTLi~~Ll~~ 30 (459)
....+.+.|++|+|||+|+..+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999653
Done!