RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13961
(459 letters)
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 892 bits (2307), Expect = 0.0
Identities = 350/439 (79%), Positives = 388/439 (88%), Gaps = 2/439 (0%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
MGKEK+HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVL 60
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
DKLKAERERGITIDIALWKFET K+ VT+IDAPGHRDFIKNMITGTSQADCA+LI+A G
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
GEFEAGISK+GQTREHALLAFTLGV+QLIV VNKMDS + + E+RF+EI KE S +IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK--WDESRFQEIVKETSNFIKK 178
Query: 181 IGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
+GYNP TV FVPISGW+GDNM+E + PW+KGW E K G GK L+EA+DAI PSR
Sbjct: 179 VGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
PT+KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM+VTFAPA +TTEVKSVEMHHE L+
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLE 298
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPV 360
+ VPGDNVGFNVKNVSVKE+RRG V GD+K PPK F A VIVLNHPGQIS GY+PV
Sbjct: 299 QGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPV 358
Query: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPP 420
LDCHTAHIAC+F E+ EK DRR+GK E++PK LKSGDAA++ VPSKPMCVE+FSE+PP
Sbjct: 359 LDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPP 418
Query: 421 LGRFAVRDMRQTVAVGVIK 439
LGRFAVRDMRQTVAVGVIK
Sbjct: 419 LGRFAVRDMRQTVAVGVIK 437
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 865 bits (2236), Expect = 0.0
Identities = 228/437 (52%), Positives = 311/437 (71%), Gaps = 13/437 (2%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+K H+N++VIGHVD GKST G L+ G ID++T+++ E+ A+++GK S K+A++LD+
Sbjct: 2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR 61
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
LK ERERG+TI++ +FET K++ TIIDAPGHRDF+KNMITG SQAD A+L+V+A GE
Sbjct: 62 LKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
+EAG+S GQTREH +LA T+G+ QLIV VNKMD TEPPY E R++EI +VS +++ G
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPT 242
+N V FVP+ GDN+ S+ M W+ G L E LD + P +P
Sbjct: 182 FNTNKVRFVPVVAPSGDNITHKSENMKWYNGP------------TLEEYLDQLELPPKPV 229
Query: 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEA 302
+KPLR+P+QDVY I G+GTVPVGRVE+GV+K G + F PA EV+S+E HH + +A
Sbjct: 230 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKA 289
Query: 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPVLD 362
PGDN+GFNV+ V K+++RG V G +PP +FTA++IV+ HP ++NGYTPVL
Sbjct: 290 EPGDNIGFNVRGVEKKDIKRGDVVG-HPNNPPTVADEFTARIIVVWHPTALANGYTPVLH 348
Query: 363 CHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLG 422
HTA +AC+ +E+ K D RTG+ E+NP+ LK GD AI+ P KP+CVE ++EFPPLG
Sbjct: 349 VHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLG 408
Query: 423 RFAVRDMRQTVAVGVIK 439
RFA+RDM +TV VG+I
Sbjct: 409 RFAMRDMGKTVGVGIIV 425
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 861 bits (2228), Expect = 0.0
Identities = 131/462 (28%), Positives = 227/462 (49%), Gaps = 38/462 (8%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
+ H++ VV+GHVD+GKST G L+Y +++ + K ++E++ MGK SFK+AW++
Sbjct: 27 VKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIM 86
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
D+ ERERG+T+ I F T + TI+DAPGHRDF+ N I G SQAD A+L V T
Sbjct: 87 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 146
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
FE+G +GQT+EH LLA +LG+ LI+ +NKMD+ + +S+ RFEEIK ++ Y+
Sbjct: 147 NAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVD 204
Query: 181 IGYNPATVAFVPISGWHGDNMLEV---SDKMPWFKGWAIERKEGKADGKCLIEALDAIL- 236
IG+ + +VPISG+ G+ + ++ + W+ G L+ L+
Sbjct: 205 IGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP------------NLMSTLENAAF 252
Query: 237 -----PPSRPTEKPLRLPLQDVY---KIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTE 288
+ P + ++ K + G++E+G I+PG +T P+ +
Sbjct: 253 KISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCI 312
Query: 289 VKSVEM--------HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDF 340
V +++ +HE A+ GD V ++ ++++ G +A S + Q F
Sbjct: 313 VDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCF 372
Query: 341 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400
++ + + G +L + + D+ +++ + L S A
Sbjct: 373 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTA-SKKKIRHLGSKQRA 431
Query: 401 IIVLV---PSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIK 439
+ + + + + + E LGR +R +T+A G I
Sbjct: 432 FVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKIS 473
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 855 bits (2211), Expect = 0.0
Identities = 131/462 (28%), Positives = 227/462 (49%), Gaps = 38/462 (8%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
+ H++ VV+GHVD+GKST G L+Y +++ + K ++E++ MGK SFK+AW++
Sbjct: 161 VKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIM 220
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
D+ ERERG+T+ I F T + TI+DAPGHRDF+ N I G SQAD A+L V T
Sbjct: 221 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
FE+G +GQT+EH LLA +LG+ LI+ +NKMD+ + +S+ RFEEIK ++ Y+
Sbjct: 281 NAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD--WSQQRFEEIKSKLLPYLVD 338
Query: 181 IGYNPATVAFVPISGWHGDNMLEV---SDKMPWFKGWAIERKEGKADGKCLIEALDAIL- 236
IG+ + +VPISG+ G+ + ++ + W+ G L+ L+
Sbjct: 339 IGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP------------NLMSTLENAAF 386
Query: 237 -----PPSRPTEKPLRLPLQDVY---KIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTE 288
+ P + ++ K + G++E+G I+PG +T P+ +
Sbjct: 387 KISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCI 446
Query: 289 VKSVEM--------HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDF 340
V +++ +HE A+ GD V ++ ++++ G +A S + Q F
Sbjct: 447 VDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCF 506
Query: 341 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAA 400
++ + + G +L + + D+ +++ + L S A
Sbjct: 507 VLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTA-SKKKIRHLGSKQRA 565
Query: 401 IIVLV---PSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIK 439
+ + + + + + E LGR +R +T+A G I
Sbjct: 566 FVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKIS 607
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 819 bits (2117), Expect = 0.0
Identities = 164/442 (37%), Positives = 254/442 (57%), Gaps = 22/442 (4%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDS 98
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GE
Sbjct: 99 TSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE 158
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI- 181
FEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++
Sbjct: 159 FEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 218
Query: 182 GYNPAT-VAFVPISGWHGDNMLEV--SDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238
GYN T V ++P+S + G N+ + S PW++G L+E LD++
Sbjct: 219 GYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP------------SLLEYLDSMTHL 266
Query: 239 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSV-EMHHE 297
R P +P+ YK +GT+ G++E G IK V P N T EV ++ + E
Sbjct: 267 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADE 324
Query: 298 ALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGY 357
+ ++ GD V V+ +++ G+V +K +P AT F AQ+ +L P ++ GY
Sbjct: 325 EISSSICGDQVRLRVRG-DDSDVQTGYVLTSTK-NPVHATTRFIAQIAILELPSILTTGY 382
Query: 358 TPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSE 417
+ V+ HTA FA++ K D +T + +++ P G I L P+C+E F +
Sbjct: 383 SCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFED 441
Query: 418 FPPLGRFAVRDMRQTVAVGVIK 439
+ +GRF +RD TVAVG +
Sbjct: 442 YQYMGRFTLRDQGTTVAVGKVV 463
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 822 bits (2126), Expect = 0.0
Identities = 162/444 (36%), Positives = 236/444 (53%), Gaps = 30/444 (6%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+L
Sbjct: 171 QSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLL 230
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
D + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V +
Sbjct: 231 DTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY-IK 179
FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK
Sbjct: 291 NNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIK 348
Query: 180 KIGYNPATVAFVPISGWHGDNMLE--VSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237
+G+ + V FVPIS G N+++ SD W+K G L+ ALD ++P
Sbjct: 349 MVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVP 396
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHE 297
P +P KPLRL + DVY+ TV GRVE G ++ ++ + VK+V + +
Sbjct: 397 PEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSD 455
Query: 298 ALQE-AVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNG 356
AV GD V + ++ V +LR G + + + +P + + F A++ + G I +G
Sbjct: 456 PSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE-NPVRRVRSFVAEIQTFDIHGPILSG 514
Query: 357 YTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM-CVESF 415
T VL + K K + + S A++ + + +
Sbjct: 515 STLVLHLGRTVTSVSL-----KIVTVNNK----RSRHIASRKRALVRISFLDGLFPLCLA 565
Query: 416 SEFPPLGRFAVRDMRQTVAVGVIK 439
E P LGRF +R TVA G++K
Sbjct: 566 EECPALGRFILRRSGDTVAAGIVK 589
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 393 bits (1013), Expect = e-138
Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 3/199 (1%)
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
P P+RLP+ D YK +GTV +G++E+G I G + P EV +
Sbjct: 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETD 59
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISNGYTPV 360
PG+N+ +K + +E+ GF+ D + + + F AQ++++ H I GY V
Sbjct: 60 TVAPGENLKIRLKGIEEEEILPGFILCDPN-NLCHSGRTFDAQIVIIEHKSIICPGYNAV 118
Query: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPP 420
L HT + + D+++G+ ++ P+ +K I L + +C+E+F +FP
Sbjct: 119 LHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQ 178
Query: 421 LGRFAVRDMRQTVAVGVIK 439
+GRF +RD +T+A+G +
Sbjct: 179 MGRFTLRDEGKTIAIGKVL 197
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 325 bits (835), Expect = e-108
Identities = 127/450 (28%), Positives = 211/450 (46%), Gaps = 51/450 (11%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVL 60
+ K + + G+VD GKST G L++ I + +E +++++ G A ++
Sbjct: 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLV 79
Query: 61 DKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
D L+AERE+GITID+A F T+K I D PGH + +NM TG S D A+++V A
Sbjct: 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY 139
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
G QTR H+ +A LG+K ++V +NKMD + E FE IK + + +
Sbjct: 140 GVQT-------QTRRHSYIASLLGIKHIVVAINKMDLNG--FDERVFESIKADYLKFAEG 190
Query: 181 IGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
I + P T+AFVP+S GDN++ S++ PW+ G+ L+E L+ + S
Sbjct: 191 IAFKPTTMAFVPMSALKGDNVVNKSERSPWYA------------GQSLMEILETVEIASD 238
Query: 241 PTEKPLRLPLQDVYKIG----GIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHH 296
LR P+Q V + G G + +G++ G + P+ ++ VKS+
Sbjct: 239 RNYTDLRFPVQYVNRPNLNFRGF----AGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE 294
Query: 297 EALQEAVPGDNVGFNVK---NVSVKELRRG--FVAGDSKASPPKATQDFTAQVIVLN-HP 350
L++A PG V ++ ++S RG V D + P+ + F A ++ + P
Sbjct: 295 GELEQAGPGQAVTLTMEDEIDIS-----RGDLLVHAD---NVPQVSDAFDAMLVWMAEEP 346
Query: 351 GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPM 410
Y + T+++ A I + D T E +L+ + + + P+
Sbjct: 347 MLPGKKY--DIKRATSYVPGSIASITHRVDVNTL--EEGPASSLQLNEIGRVKVSLDAPI 402
Query: 411 CVESFSEFPPLGRFAV--RDMRQTVAVGVI 438
++ +S G F V R TVA G+I
Sbjct: 403 ALDGYSSNRTTGAFIVIDRLTNGTVAAGMI 432
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 230 bits (588), Expect = 9e-72
Identities = 72/448 (16%), Positives = 134/448 (29%), Gaps = 109/448 (24%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
N+ +IG SG+++
Sbjct: 19 SHMANVAIIGTEKSGRTSLA---------------------------------------A 39
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
++G + DI ++ + + +DA + +K++IT + +D AVL +
Sbjct: 40 NLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPP------ 93
Query: 125 AGISKNG---QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI 181
G T E + LG K I+ + + DST + ++K SG
Sbjct: 94 -----QGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGT---- 144
Query: 182 GYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADG----KCLIEALDAILP 237
V + + +G K I + +
Sbjct: 145 ----------------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIE 182
Query: 238 -PSRPTEK-PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMH 295
+ P R+ + + + G G V +G V+ G+ K P + E++S++ H
Sbjct: 183 AENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH 242
Query: 296 HEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLNHPGQISN 355
+ A G VG +KNV K++ RGF+ D + V I
Sbjct: 243 DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIVTT--DYTLECTVSKFTKK--IEP 298
Query: 356 GYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415
L + +I + K G ++ L +K +
Sbjct: 299 ASVLHLFVGLQSEPVRVEKI---------LVDGNEVEEAKPGSTCVLELSGNKKLAYSK- 348
Query: 416 SEFPPLG-RFAVRD---MRQTVAVGVIK 439
RF + + ++ A G K
Sbjct: 349 ------QDRFLLANLDLTQRFAAYGFSK 370
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 230 bits (588), Expect = 2e-70
Identities = 87/431 (20%), Positives = 161/431 (37%), Gaps = 80/431 (18%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ +IN+ + GH+D GK+T + + + + + DKL
Sbjct: 16 DFKNINLGIFGHIDHGKTTLS------------KVLTEIASTSA------------HDKL 51
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
++RGITIDI F+ + +T++DAPGH D I+ +++ D A+++V A G
Sbjct: 52 PESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK 111
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
QT EH L+ + ++V + K D+ + +K + +
Sbjct: 112 T-------QTGEHMLILDHFNIPIIVV-ITKSDNAGTEEIKRTEMIMKSILQST-----H 158
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP---PSR 240
N + +PIS G + E L + L R
Sbjct: 159 NLKNSSIIPISAKTGFGVDE------------------------LKNLIITTLNNAEIIR 194
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
TE ++PL + I G GTV G + G++K G + P N++T+V+S++ E++
Sbjct: 195 NTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVM 254
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPP---KATQDFTAQVIVLNH-PGQISNG 356
EA GD VG ++ V K++ RG + S + A++ + + ++
Sbjct: 255 EAKAGDRVGMAIQGVDAKQIYRGXIL----TSKDTKLQTVDKIVAKIKISDIFKYNLTPK 310
Query: 357 YTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFS 416
L+ + K+ + SG+ + + E
Sbjct: 311 MKVHLNVGMLIVPAVAVPFKK--VTFGKTEENIILNEVISGNEXYXAFELEEKVLAE--- 365
Query: 417 EFPPLGRFAVR 427
R +
Sbjct: 366 ---VGDRVLIT 373
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 202 bits (517), Expect = 6e-61
Identities = 134/443 (30%), Positives = 203/443 (45%), Gaps = 70/443 (15%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T + K E G FK +D
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAIT---------------KILAEGGGAKFKKYEEIDNAP 45
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ER RGITI+ A ++ T+ + D PGH D++KNMITGT+ D +L+VAA G
Sbjct: 46 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
QTREH LLA +GV+ ++V VNK D+ + E ++ E+ + + GY
Sbjct: 106 -------QTREHLLLARQIGVEHVVVYVNKADAVQ---DSEMVELVELEIRELLTEFGYK 155
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPTE 243
+ S LE D K ++++ L++A+D +P P+R E
Sbjct: 156 GEETPIIVGSALCA---LEQRDPELGLK--SVQK---------LLDAVDTYIPVPTRDLE 201
Query: 244 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFA--PANLTTEVKSVEMHHEALQE 301
KP LP++ VY I G GTV G +E G++K G F N+ T V +EM H++L
Sbjct: 202 KPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDR 261
Query: 302 AVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQISN 355
A GDN+G V+ + ++LRRG V +K + Q AQV +L H +
Sbjct: 262 AEAGDNLGALVRGLKREDLRRGLVM--AKPGSIQPHQKVEAQVYILTKEEGGRHKP-FVS 318
Query: 356 GYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESF 415
+ PV+ T +AC+ + G+ + L+ +PM +E
Sbjct: 319 HFMPVMFSLTWDMACRI-------------ILPPGKELAMPGEDLKLTLILRQPMILEKG 365
Query: 416 SEFPPLGRFAVRDMRQTVAVGVI 438
RF +RD +T+ G++
Sbjct: 366 Q------RFTLRDGNRTIGTGLV 382
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 198 bits (505), Expect = 4e-59
Identities = 143/446 (32%), Positives = 203/446 (45%), Gaps = 66/446 (14%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T L Y A E K +DK
Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAP 54
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 55 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 114
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE-PPYSEARFEEIKKEVSGYIKKIGY 183
QTREH LLA +GV ++V +NK+D + P + E++ ++ Y +
Sbjct: 115 -------QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY----EF 163
Query: 184 NPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP-PSRPT 242
V + S LE + P E L++A+D +P P R
Sbjct: 164 PGDEVPVIRGSALLA---LEQMHRNP---KTRRGENEWVDKIWELLDAIDEYIPTPVRDV 217
Query: 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM---LVTFAPANLTTEVKSVEMHHEAL 299
+KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEMH + L
Sbjct: 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTL 277
Query: 300 QEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQI 353
QE + GDNVG ++ VS +E+ RG V +K F A V VL H G
Sbjct: 278 QEGIAGDNVGVLLRGVSREEVERGQVL--AKPGSITPHTKFEASVYVLKKEEGGRHTG-F 334
Query: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVE 413
+GY P T + + + GD + KP+ +E
Sbjct: 335 FSGYRPQFYFRTTDVTGVV-------------QLPPGVEMVMPGDNVTFTVELIKPVALE 381
Query: 414 SFSEFPPLG-RFAVRDMRQTVAVGVI 438
G RFA+R+ +TV GV+
Sbjct: 382 E-------GLRFAIREGGRTVGAGVV 400
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 207 bits (529), Expect = 1e-58
Identities = 132/457 (28%), Positives = 200/457 (43%), Gaps = 87/457 (19%)
Query: 1 MGKE-----KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFK 55
M KE K H+N+ IGHVD GK+T T I + + A+
Sbjct: 285 MSKEKFERTKPHVNVGTIGHVDHGKTTLTA-------AITTVLAKTYGGAAR-------A 330
Query: 56 YAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLI 115
+ + D E+ RGITI+ + +++T + +D PGH D++KNMITG +Q D A+L+
Sbjct: 331 FDQI-DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILV 389
Query: 116 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE-PPYSEARFEEIKKEV 174
VAA G QTREH LL +GV +IV +NK D + E E+++ +
Sbjct: 390 VAATDGPMP-------QTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442
Query: 175 SGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC----LIE 230
S Y + GD+ P +G A++ EG A+ + L
Sbjct: 443 SQY-----------------DFPGDD-------TPIVRGSALKALEGDAEWEAKILELAG 478
Query: 231 ALDAILP-PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFA--PANLTT 287
LD+ +P P R +KP LP++DV+ I G GTV GRVE G+IK G V +
Sbjct: 479 FLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKS 538
Query: 288 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQVIVL 347
VEM + L E G+NVG ++ + +E+ RG V +K K F ++V +L
Sbjct: 539 TCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYIL 596
Query: 348 N------HPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAI 401
+ H GY P T + E + + GD
Sbjct: 597 SKDEGGRHTP-FFKGYRPQFYFRTTDVTGTI-------------ELPEGVEMVMPGDNIK 642
Query: 402 IVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+V+ P+ ++ RFA+R+ +TV GV+
Sbjct: 643 MVVTLIHPIAMDDGL------RFAIREGGRTVGAGVV 673
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 170 bits (433), Expect = 1e-48
Identities = 89/418 (21%), Positives = 151/418 (36%), Gaps = 121/418 (28%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
+ +NI ++GHVD GK++ T L D+
Sbjct: 6 QAEVNIGMVGHVDHGKTSLTKALTGVWT----------------------------DRHS 37
Query: 65 AERERGITI-----DIALWKFETSKFY------------------VTIIDAPGHRDFIKN 101
E RGI+I D + K Y V+ +D+PGH +
Sbjct: 38 EELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97
Query: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161
M++G S D A+L++AA + QT+EH + LG+ ++I+ NK+D +
Sbjct: 98 MLSGASLMDGAILVIAANEPCPQP------QTKEHLMALEILGIDKIIIVQNKIDLVDEK 151
Query: 162 YSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEG 221
+E +E+IK+ V G I + +PIS H N+
Sbjct: 152 QAEENYEQIKEFVKGTIAE------NAPIIPISAHHEANIDV------------------ 187
Query: 222 KADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGGIGTVPV--------GRVETGVI 272
L++A+ +P P R + R+ + + I GT G + GV
Sbjct: 188 ------LLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVF 241
Query: 273 KPGMLVTFAP------------ANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSV 317
K G + P LTT++ S+ + L++A PG +G ++
Sbjct: 242 KVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTK 301
Query: 318 KELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQ---ISNGYTPVLDCHTA 366
+ G V G PP + T + +L+ + + G +L+ TA
Sbjct: 302 SDALTGSVVGLPGTLPPIREK-ITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTA 358
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 167 bits (424), Expect = 2e-47
Identities = 88/481 (18%), Positives = 155/481 (32%), Gaps = 124/481 (25%)
Query: 3 KEKTHINIVVIGHVDSGKSTT----TGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
K + +NI V+GHVD GK+T TG K G + I E
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCES-------------- 49
Query: 59 VLDKLKAERERGITIDIALWKFETSKF-YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 117
K + E ++ IDAPGH + M++G + D A+L+VA
Sbjct: 50 --CKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 107
Query: 118 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY 177
A + QTREH + +GVK LI+ NK+D + +++ +IK+ G
Sbjct: 108 ANEPFPQP------QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161
Query: 178 IKKIGYNPATVA-FVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAIL 236
A +P+S H N+ LIE ++ +
Sbjct: 162 -------WAENVPIIPVSALHKINIDS------------------------LIEGIEEYI 190
Query: 237 P-PSRPTEKPLRLPLQDVYKIGGI--------GTVPVGRVETGVIKPGMLVTFAP----- 282
P R + + + + + G V G + G+ K + P
Sbjct: 191 KTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVE 250
Query: 283 -------ANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKAS 332
+ T++ S+ E +EA PG V +++ + G + + A
Sbjct: 251 KQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAE 310
Query: 333 PPKATQDFTAQVIVLNHP---------GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRT 383
P + +L I T +L ++ +K
Sbjct: 311 VPVLWN-IRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVK------- 362
Query: 384 GKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFA----VRDMRQTVAVGVIK 439
D + L +P+ V S + R + + + G+++
Sbjct: 363 -------------KDEIEVELR--RPVAVWSNNI-----RTVISRQIAGRWRMIGWGLVE 402
Query: 440 V 440
+
Sbjct: 403 I 403
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 166 bits (423), Expect = 4e-47
Identities = 94/420 (22%), Positives = 151/420 (35%), Gaps = 125/420 (29%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL-DKL 63
+ +NI ++GHVD GK+T T + + V D
Sbjct: 8 QAEVNIGMVGHVDHGKTTLT------------KALTG-----------------VWTDTH 38
Query: 64 KAERERGITI-----DIALWKFETSKFY------------------VTIIDAPGHRDFIK 100
E RGITI D + + Y V+ IDAPGH +
Sbjct: 39 SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98
Query: 101 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160
M+ G S D A+L++AA QTREH + +G K +I+ NK++ +
Sbjct: 99 TMLAGASLMDGAILVIAANEPCPRP------QTREHLMALQIIGQKNIIIAQNKIELVDK 152
Query: 161 PYSEARFEEIKKEVSGYIKKIGYNPATVA-FVPISGWHGDNMLEVSDKMPWFKGWAIERK 219
+ + +IK+ + G A A +PIS HG N+
Sbjct: 153 EKALENYRQIKEFIEGT-------VAENAPIIPISALHGANIDV---------------- 189
Query: 220 EGKADGKCLIEALDAILP-PSRPTEKPLRLPLQDVYKIGGIGTVPV--------GRVETG 270
L++A++ +P P R KP ++ + + + GT P G + G
Sbjct: 190 --------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQG 241
Query: 271 VIKPGMLVTFAP------------ANLTTEVKSVEMHHEALQEAVPGDNVGFNVK---NV 315
+K G + P +TTE+ S++ + ++EA PG VG K +
Sbjct: 242 KLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYL 301
Query: 316 SVKELRRGFVAGDSKASPPKATQDFTAQVIVLN------HPGQ---ISNGYTPVLDCHTA 366
+ +L G V G PP +V +L + I +L+ TA
Sbjct: 302 TKGDLMAGNVVGKPGKLPPVWDS-LRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTA 360
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 144 bits (364), Expect = 4e-42
Identities = 20/95 (21%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 232 LDAILPPSRPTEKPL-RLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVK 290
+ ++KP ++ +++V I G + +G VE+G+I G V +
Sbjct: 20 VKEEEKIEILSKKPAGKVVVEEVVNIMGKDVI-IGTVESGMIGVGFKVKGPSG--IGGIV 76
Query: 291 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGFV 325
+E + E ++ A+ GD +G +++ + ++++G V
Sbjct: 77 RIERNREKVEFAIAGDRIGISIEG-KIGKVKKGDV 110
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 86.4 bits (215), Expect = 3e-18
Identities = 88/343 (25%), Positives = 132/343 (38%), Gaps = 106/343 (30%)
Query: 4 EKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
E+ ++ N +I HVD GKST L+ G I +R EK Q +LD
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISER-----EKREQ-----------LLDT 45
Query: 63 LKAERERGITI---DIAL-WKFETSKFYV-TIIDAPGHRDFIKNMITGT-----SQADC- 111
L ERERGIT+ + + +K + Y +ID PGH DF + + A C
Sbjct: 46 LDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------SYEVSRALAACE 98
Query: 112 -AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV-NKMD--STEPPYSEARF 167
A+L++ A G EA QT + A + I+ V NK+D S +
Sbjct: 99 GALLLIDASQG-IEA------QTVANFWKAVEQDLV--IIPVINKIDLPSADV------- 142
Query: 168 EEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKC 227
+ +KK++ + G + + S K G IE
Sbjct: 143 DRVKKQIEEVL----------------GLDPEEAILASAKE----GIGIE---------- 172
Query: 228 LIEALDAIL----PPSRPTEKPLRLPL----QDVYKIGGIGTVPVGRVETGVIKPGMLVT 279
E L+AI+ PP +KPL+ + D Y+ G V R+ G +KPG +
Sbjct: 173 --EILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYR----GAVAFVRIFDGEVKPGDKIM 226
Query: 280 FAPANLTTEVKSV---EMHHEALQEAVPGDNVGF---NVKNVS 316
EV V + GD VG+ ++K+V
Sbjct: 227 LMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIKDVR 268
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 85.2 bits (212), Expect = 7e-18
Identities = 85/340 (25%), Positives = 131/340 (38%), Gaps = 106/340 (31%)
Query: 7 HI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 65
+I N +I H+D GKST + +I CGG+ R E EAQ VLD +
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-----EMEAQ-----------VLDSMDL 46
Query: 66 ERERGITI---DIAL-WKFETSKFYV-TIIDAPGHRDFIKNMITGT-----SQADC--AV 113
ERERGITI + L +K + Y ID PGH DF + S A C A+
Sbjct: 47 ERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------SYEVSRSLAACEGAL 99
Query: 114 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV-NKMD--STEPPYSEARFEEI 170
L+V AG G EA QT + A + ++ +V V NK+D + +P E +
Sbjct: 100 LVVDAGQG-VEA------QTLANCYTAMEMDLE--VVPVLNKIDLPAADP-------ERV 143
Query: 171 KKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIE 230
+E+ + G + + S K G ++ +
Sbjct: 144 AEEIEDIV----------------GIDATDAVRCSAKT----GVGVQ------------D 171
Query: 231 ALDAIL----PPSRPTEKPLRLPL----QDVYKIGGIGTVPVGRVETGVIKPGMLVTFAP 282
L+ ++ PP E PL+ + D Y G V + R++ G ++ G V
Sbjct: 172 VLERLVRDIPPPEGDPEGPLQALIIDSWFDNYL----GVVSLIRIKNGTLRKGDKVKVMS 227
Query: 283 ANLTTEVKSV---EMHHEALQEAVPGDNVGF---NVKNVS 316
T + E G+ VG+ +K++
Sbjct: 228 TGQTYNADRLGIFTPKQVDRTELKCGE-VGWLVCAIKDIH 266
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 79.3 bits (195), Expect = 7e-16
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 39/164 (23%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
N+ VI HVD GKST T L+ + G I G ++ D K E+E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAA------------KAGEARF---TDTRKDEQE 65
Query: 69 RGITI----------------DIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCA 112
RGITI K + + F + +ID+PGH DF + D A
Sbjct: 66 RGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGA 125
Query: 113 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
+++V G+ QT A +K ++V +NK+D
Sbjct: 126 LVVVDT-----IEGVCV--QTETVLRQALGERIKPVVV-INKVD 161
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 57.5 bits (140), Expect = 4e-09
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 27/120 (22%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK---GSFKYAWVLDKLKA 65
+ ++GH SGK+T T L+YK G ++ G+ G D
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKER------------RGRVEEG----TTTTDYTPE 54
Query: 66 ERERGITIDIAL----WKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
+ T+ + ++ V ++DAPG+ DF+ + AD A++ V+A G
Sbjct: 55 AKLHRTTVRTGVAPLLFR----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG 110
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 55.9 bits (135), Expect = 1e-08
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM-GKGSFKYAWVLDKLKAERERG 70
+I H D+GK+T T L+ G I + A + + + ++A D ++ E++RG
Sbjct: 18 IISHPDAGKTTLTEKLLLFGGAI---------QLAGTIKSRKAARHA-TSDWMELEKQRG 67
Query: 71 ITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
I++ ++ +F + + ++D PGH DF ++ + D A++++ A G
Sbjct: 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG 118
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 55.9 bits (135), Expect = 2e-08
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM-GKGSFKYAWVLDKLKAERERG 70
+I H D+GK+T T ++ I + A + G+GS ++A D ++ E++RG
Sbjct: 18 IISHPDAGKTTITEKVLLFGQAI---------QTAGTVKGRGSNQHA-KSDWMEMEKQRG 67
Query: 71 ITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
I+I ++ +F V ++D PGH DF ++ + DC ++++ A G
Sbjct: 68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 50.3 bits (121), Expect = 1e-07
Identities = 52/204 (25%), Positives = 74/204 (36%), Gaps = 61/204 (29%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69
+ ++GHVD GK+T +D I + QE G
Sbjct: 11 VTIMGHVDHGKTTL----------LD--AIRHSKVTEQEAG------------------- 39
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129
GIT I ++ + +T +D PGH F G D +L+VAA G
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMP----- 94
Query: 130 NGQTRE---HALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP- 185
QT E HA A V +IV +NKMD EA + + +E+ Y P
Sbjct: 95 --QTVEAINHAKAA---NV-PIIVAINKMDK-----PEANPDRVMQELMEY----NLVPE 139
Query: 186 ---ATVAFVPISGWHG---DNMLE 203
F +S D++LE
Sbjct: 140 EWGGDTIFCKLSAKTKEGLDHLLE 163
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 49.0 bits (118), Expect = 3e-06
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 22/98 (22%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI-EKFEKEAQEMGKGSFKYAWVLDKLKAER 67
NI + H+D+GK+TTT +++ G K I E + A M D ++ E+
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTGVNHK--IGEVHDGAAT-M-----------DWMEQEQ 57
Query: 68 ERGITIDIA----LWKFETSKFY---VTIIDAPGHRDF 98
ERGITI A W ++ + IID PGH DF
Sbjct: 58 ERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF 95
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 47.9 bits (115), Expect = 6e-06
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 27/97 (27%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG---KGSFKYAWVLDKLKA 65
NI + H+D+GK+TTT ++Y G I K +G +G A +D ++
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHK------------IGEVHEG----AATMDFMEQ 57
Query: 66 ERERGITIDIA----LWKFETSKFYVTIIDAPGHRDF 98
ERERGITI A WK + IID PGH DF
Sbjct: 58 ERERGITITAAVTTCFWK----DHRINIIDTPGHVDF 90
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 47.5 bits (114), Expect = 6e-06
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 27/97 (27%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG---KGSFKYAWVLDKLKA 65
NI ++ H+D+GK+TTT ++Y G I K +G +G A +D ++
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHK------------IGETHEG----ASQMDWMEQ 55
Query: 66 ERERGITIDIA----LWKFETSKFYVTIIDAPGHRDF 98
E++RGITI A W+ V IID PGH DF
Sbjct: 56 EQDRGITITSAATTAAWE----GHRVNIIDTPGHVDF 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 4e-05
Identities = 58/326 (17%), Positives = 91/326 (27%), Gaps = 130/326 (39%)
Query: 46 AQE--MGK---GSFKYA---WVLDKLKAERER----GITI-DIALWKFETSKFYVTIIDA 92
+QE MG + K A W ++ A+ G +I DI +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVW--NR--ADNHFKDTYGFSILDIV--INNPVNLTIHFGGE 1679
Query: 93 PGHR---DFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ-- 147
G R ++ + + E + + + FT Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT----QPA 1735
Query: 148 -LIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWH--GDNMLEV 204
++ A FE++K + G I AT A G H G E
Sbjct: 1736 LTLMEK------------AAFEDLKSK--GLIPA----DATFA-----G-HSLG----EY 1767
Query: 205 SDKMPWFKGWAIERKEGKADGKCLIEAL----DAILPPSRPTEKPLRLPLQDVYKI---- 256
+ AL D + ++ + ++
Sbjct: 1768 A-------------------------ALASLADV-------------MSIESLVEVVFYR 1789
Query: 257 GGIGTVPVGRVETGVIKPGML--------VTFAPANLTTEVKSVEMHHEALQEAVPGDNV 308
G V V R E G GM+ +F+ L V+ V L E V N
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---N- 1845
Query: 309 GFNVKN---VSVKELRRGFVAGDSKA 331
+NV+N V AGD +A
Sbjct: 1846 -YNVENQQYV---------AAGDLRA 1861
Score = 43.9 bits (103), Expect = 1e-04
Identities = 50/273 (18%), Positives = 78/273 (28%), Gaps = 87/273 (31%)
Query: 162 YSEAR--FEEIKK---EVSGY-IKKIGY-NPA--TVAFVPISGWHGDNMLEVSDKMPWFK 212
A+ + + G+ I I NP T+ F G G + E M +
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF---GGEKGKRIRENYSAMIF-- 1693
Query: 213 GWAIERKEGKADGKCLIEALDAILPPSR-------PTEKPLRL-----PLQDVYKIGGIG 260
E DGK E + + L P +
Sbjct: 1694 -------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSATQFTQP--------ALT 1737
Query: 261 TVPVG--RV--ETGVIKPGM------------LVTFAPANLTTE--VKSVEMHH--EALQ 300
+ G+I L + A ++ E V+ V + +Q
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MSIESLVEVV--FYRGMTMQ 1794
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQV---------IV-LNHP 350
AVP D +G N + + G VA + +A Q +V IV N
Sbjct: 1795 VAVPRDELG--RSNYGMIAINPGRVA---ASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 351 GQ---ISNGYTPVLDCHTAHIACKFAEIKEKCD 380
Q + G LD T F +++ K D
Sbjct: 1850 NQQYVAA-GDLRALDTVTN--VLNFIKLQ-KID 1878
Score = 38.1 bits (88), Expect = 0.008
Identities = 59/374 (15%), Positives = 106/374 (28%), Gaps = 133/374 (35%)
Query: 192 PISGWHGDNMLEVSDKMP---WFKGWAIERKEGKADGKCLIEALDAIL---PPSRPTE-- 243
P++ HG LE +P +F A + +E K L E + P+ P E
Sbjct: 8 PLTLSHGS--LEHVLLVPTASFFI--ASQLQEQFN--KILPEPTEGFAADDEPTTPAELV 61
Query: 244 -----------KP---------LRLPLQ----------DVYKIGGIGTVPVGRVETGVIK 273
+P L L L D++ + + +T ++K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL--AAKLL-QENDTTLVK 118
Query: 274 PGMLV-TFAPANLTTEVKSVEMHHEALQEAVPGDNVGF--------NVKNVSVKELR--- 321
L+ + A + + + + AL AV N N + +ELR
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT-DDYFEELRDLY 177
Query: 322 ---RGFVA----------GDSKASPPKATQDFTAQVIV---LNHPGQISNGYTPVLDCHT 365
V + + A + FT + + L +P + L +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--KDYLL--S 233
Query: 366 AHIACK------FAEIKEKCDRRTGKTTEENPKALK--SGDAAIIV--LVPSKPMCVESF 415
I+C A + G T E LK +G + +V + ++ ESF
Sbjct: 234 IPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 416 SE-------------------FPPL---------------GR----FAVRDMRQTVAVGV 437
+P G ++ ++ Q
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 438 IKVNNNHGNKYLPT 451
+ N +LP
Sbjct: 353 VN----KTNSHLPA 362
Score = 37.0 bits (85), Expect = 0.015
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 56 YAWVL---DKLKAERERGITIDIALWKFETSKFYVTIIDA-PGHRDFIKNMITGTSQADC 111
A V+ ++ RG+T+ +A+ + E + +I PG + SQ
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG------RVAASFSQEAL 1826
Query: 112 AVLI--VAAGTGEF-EA------G----ISKNGQTREHALLAFTLGVKQLIVGVNKMDST 158
++ V TG E + G R AL T + + + K+D
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDLR--ALDTVTNVLNFI--KLQKIDII 1880
Query: 159 EPPYSEARFEEIKKEV 174
E S EE++ +
Sbjct: 1881 ELQKS-LSLEEVEGHL 1895
Score = 30.4 bits (68), Expect = 1.7
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 38/129 (29%)
Query: 273 KPGM---LVTFAPANLTTEVKSVEMHHEALQEA--VPGDNVGFNVKNVSVKELRRGFVAG 327
+ GM L + A + V A D GF++ ++ V
Sbjct: 1628 EQGMGMDLYKTSKA-----AQDV------WNRADNHFKDTYGFSILDI-VIN-------- 1667
Query: 328 DSKASPPKATQDFTAQVIVLNHPGQ-ISNGYTPVLDCHTAHIAC-KFAEIKEKCDRRTGK 385
+P T F + G+ I Y+ + T K +I ++ + +
Sbjct: 1668 ----NPVNLTIHFGGE------KGKRIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 386 TTEENPKAL 394
T + K L
Sbjct: 1717 YTFRSEKGL 1725
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 43.8 bits (104), Expect = 9e-05
Identities = 46/239 (19%), Positives = 75/239 (31%), Gaps = 78/239 (32%)
Query: 10 IVVI-GHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEA----QEMGKGSFKYAWVLDKL 63
IV + GHVD GK+T +D R +EA Q +G +
Sbjct: 7 IVSVLGHVDHGKTTL----------LDHIRGSAVASREAGGITQHIGATEIPMDVIEGIC 56
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMIT-GTSQADCAVLIVAAGTGE 122
++ + + + ID PGH F + G + AD A+LIV G
Sbjct: 57 GDFLKK--------FSIRETLPGLFFIDTPGHEAF-TTLRKRGGALADLAILIVDINEG- 106
Query: 123 FEAGISKNGQTRE---HALLAFTLGVKQLIVGVNKMD---------------------ST 158
F+ QT+E + T +V NK+D
Sbjct: 107 FKP------QTQEALNILRMYRT----PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156
Query: 159 EPPYSEARFEEIKKEVSGYIKKIGYNPA----------TVAFVPISGWHG---DNMLEV 204
+ + E+ ++ G+ V+ +PIS G +L +
Sbjct: 157 VQQKLDTKVYELVGKLHEE----GFESERFDRVTDFASQVSIIPISAITGEGIPELLTM 211
Score = 29.5 bits (67), Expect = 2.7
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 230 EALDAILPPSRPTEKP-------LRLPLQDVYKIGGIGTVPVG-RVETGVIKPGMLVTFA 281
E + I + +RL + V++ + G V TGVI+ G +
Sbjct: 443 EWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQS-KPAI-GGVEVLTGVIRQGYPLMND 500
Query: 282 PANLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSV 317
V+S++ E L+ A G V +K+
Sbjct: 501 DGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVY 536
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 42.7 bits (99), Expect = 2e-04
Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 48/241 (19%)
Query: 4 EKTHINIVVIGHVDSGKST-----------------TTGHLIYKCGGIDKRTIEKFE--K 44
++ ++V+G + GKST T L G +K+ F K
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGK 125
Query: 45 EAQEMGKGSFKYAWVLDKL--------KAERERGITIDIALWKFETSKFYVTIIDAPG-- 94
Q++ +FKY + +D K + + + + + + I+D+PG
Sbjct: 126 SPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLN 185
Query: 95 ----HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK--QL 148
+ + + + ++ A E L + + +
Sbjct: 186 DTEARNELSLGYV---NNCHAILFVMRASQPCTLG---------ERRYLENYIKGRGLTV 233
Query: 149 IVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI-GYNPATVAFVPISGWHGDNMLEVSDK 207
VN D + E + ++++ N A V + + + E+S
Sbjct: 234 FFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSI 293
Query: 208 M 208
Sbjct: 294 Q 294
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 40.3 bits (94), Expect = 5e-04
Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 37/197 (18%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ + I+++G SGKS+ + +K + +E
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLE----------------------- 53
Query: 64 KAERERGITIDIALWKFETSKF-YVTIIDAPGHRDFIKNMITGT---SQADCAVLIVAAG 119
T I S F I D PG DF + ++ A
Sbjct: 54 -------STNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQ 106
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIK 179
EA +++ T A V ++K+D + +I + + +
Sbjct: 107 DDYMEA-LTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLA 163
Query: 180 KIGYNPATVAFVPISGW 196
G ++F S +
Sbjct: 164 DAGLEKLHLSFYLTSIY 180
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 41.0 bits (97), Expect = 6e-04
Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129
GIT I + ET +T +D PGH F G D VL+VAA G
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMP----- 90
Query: 130 NGQTRE---HALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNP- 185
QT E HA A V ++V VNK+D EA + +K E+S Y G P
Sbjct: 91 --QTIEAIQHAKAA---QV-PVVVAVNKIDK-----PEADPDRVKNELSQY----GILPE 135
Query: 186 ---ATVAFVPISGWHG---DNMLE 203
FV +S G D +L+
Sbjct: 136 EWGGESQFVHVSAKAGTGIDELLD 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 38.7 bits (91), Expect = 0.004
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 25/123 (20%)
Query: 87 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE---HALLAFTL 143
+T +D PGH F GT D +L+VAA G + QT E HA A
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMK-------QTVESIQHAKDA--- 103
Query: 144 GVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGY---IKKIGYNPATVAFVPISGWHGDN 200
V +++ +NK D +EA E++KKE+ Y + G V V +S G+N
Sbjct: 104 HV-PIVLAINKCDK-----AEADPEKVKKELLAYDVVCEDYG---GDVQAVHVSALTGEN 154
Query: 201 MLE 203
M+
Sbjct: 155 MMA 157
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 37.3 bits (86), Expect = 0.007
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 8/151 (5%)
Query: 50 GKGSFKYAWVLDKLKAERER--GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTS 107
GK S V ++ T + +L F ++ + +++ PG ++ +
Sbjct: 11 GKSSICKV-VFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSER 68
Query: 108 Q-ADCAVLI-VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 165
L+ V E+ I+ E+A + + V ++K+D +
Sbjct: 69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNP-SIN-IEVLIHKVDGLSEDFKVD 126
Query: 166 RFEEIKKEVSGYIKKIGYNPATVAFVPISGW 196
+I + + ++G + V+F S +
Sbjct: 127 AQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 33.4 bits (77), Expect = 0.078
Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 29/164 (17%)
Query: 62 KLKAERERGITIDIALWKFETSKFYVTIIDAPG----------HRDFIKNMITG-----T 106
K++ + G+T I + E IID PG ++ IK+ I
Sbjct: 25 KVRRGKRPGVTRKII--EIEWKNHK--IIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 80
Query: 107 SQADCAVLIV-AAGTGEFEAGISKNGQTREHALLAFTLGVKQL--IVGVNKMDSTEPPYS 163
D AVL+V E K G+ L + IV VNK+D +
Sbjct: 81 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN--- 137
Query: 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDK 207
+ ++ + F+PIS GDN+ + ++
Sbjct: 138 ----VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.090
Identities = 42/331 (12%), Positives = 96/331 (29%), Gaps = 98/331 (29%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
+ N+++ G + SGK+ + + K + FK W+ LK
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL-----SYKVQCKMD----------FKIFWL--NLK 190
Query: 65 AERERGITIDIALWKF--ETSKFYVTIIDAPGH--------RDFIKNMITGTSQADC-AV 113
+++ L K + + + D + + ++ ++ +C V
Sbjct: 191 NCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 114 L-------IVAAGTGEFEAGISKNGQ------TREHALLAFTLGVKQLIVGVNKMDST-E 159
L A F N TR + F + ++ T
Sbjct: 250 LLNVQNAKAWNA----F------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 160 PPYSEA--------RFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWF 211
P ++ R +++ +EV NP ++ + + D + +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREV----LTT--NPRRLSIIA---------ESIRDGLATW 344
Query: 212 KGWAIERKEGKADGKCLIEALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGV 271
W + L +++ L P E + ++ +
Sbjct: 345 DNWK------HVNCDKLTTIIESSLNVLEPAE------YRKMFDRLSV-------FPPSA 385
Query: 272 -IKPGMLVTFAPANLTTEVKSV--EMHHEAL 299
I +L + ++V V ++H +L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 33.3 bits (75), Expect = 0.21
Identities = 54/333 (16%), Positives = 89/333 (26%), Gaps = 117/333 (35%)
Query: 122 EFEAGIS--KNGQTREHALLAFT--LGVKQLIVGVNKMDSTEPPYSEARFEEI---KKEV 174
+FE G + AF K + D + S+ + I K V
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAV 61
Query: 175 SGYIKKIG----YNPATVA-FVPISGWHGDNMLEVSDKMPWFKG-WAIERKEGKADGKCL 228
SG ++ V FV + +L + E+++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFV-------EEVLR--INYKFLMSPIKTEQRQ-------- 104
Query: 229 IEALDAILPPSRPTEK--PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT 286
PS T R L V FA N
Sbjct: 105 ---------PSMMTRMYIEQRDRLY--------NDNQV---------------FAKYN-- 130
Query: 287 TEVKSVEMHH---EALQEAVPGDNV------GFNVKNVSVKELRRGFVAGDSK--ASPP- 334
V ++ + +AL E P NV G K + V K
Sbjct: 131 --VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALD-----VCLSYKVQCKMDF 182
Query: 335 -----KATQDFTAQVIV-----LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTG 384
+ + ++ L + QI +T D H+++I + I+ + RR
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSD-HSSNIKLRIHSIQAE-LRRLL 238
Query: 385 KTTEENPKALKSGDAAIIVL--VPSKPMCVESF 415
K ++ L +VL V +F
Sbjct: 239 K-SKPYENCL-------LVLLNV-QNAKAWNAF 262
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 32.5 bits (75), Expect = 0.21
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 106 TSQADCAVLIVAAGTGE-FEAGISK-----NGQT-REHALLAFTL--GVKQLIVGVNKMD 156
T+ D ++ AAG G + K QT EH++ A VK++++ ++ D
Sbjct: 3 TTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGD 62
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 32.1 bits (74), Expect = 0.26
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 106 TSQADCAVLIVAAGTGE-FEAGISK-----NGQT-REHALLAFTL--GVKQLIVGVNKMD 156
+ ++ AAG+GE G+ K +GQT E A+ V ++V V
Sbjct: 3 REAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPA-- 60
Query: 157 STEPPYSEARFEEIKKEVSG 176
+ V+G
Sbjct: 61 -DRTDEARQILGHRAMIVAG 79
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 30.9 bits (71), Expect = 0.57
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 111 CAVLIVAAGTGE-FEAGISK-----NGQT-REHALLAFTL--GVKQLIVGVNKMDSTEPP 161
+V+++A G G+ + + K GQ ++ F+ VK+++V +
Sbjct: 5 VSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFE 64
Query: 162 YSEARFEEIKKEVSG 176
E +
Sbjct: 65 EYEESIDVDLSFAIP 79
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 30.6 bits (70), Expect = 0.77
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 111 CAVLIVAAGTGE-FEAGISK-----NGQT-REHALLAFT--LGVKQLIVGVNKMDSTEPP 161
LI AAG G F A K +T EH L F V +V V+ D T
Sbjct: 7 NIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFAD 65
Query: 162 YSEARFEEIKKEVSG 176
+ F +++ +G
Sbjct: 66 KVQTAFPQVRVWKNG 80
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 31.0 bits (71), Expect = 0.81
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 359 PVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDAAIIVLVPSKPMCVESFSEF 418
V+D HT I F + KE EE + + D + +P+ + E
Sbjct: 245 AVIDGHTESI---FVKTKEGA------EPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEI 295
Query: 419 ----PPLGRFAVRDMRQTVAVGVIKVNNNHGNKY 448
P L R M ++ VG I+ + KY
Sbjct: 296 DRPQPRLDRNEGNGM--SIVVGRIRKDPIFDVKY 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.1 bits (68), Expect = 1.0
Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 31/162 (19%)
Query: 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 61
+ + IV G SGK+T + I + E + E +
Sbjct: 9 ANREINFKIVYYGPGLSGKTT----NLKW---IYSKVPEGRKGE--------------MV 47
Query: 62 KLKAERERGITIDIALWKFETSKFY---VTIIDAPGH---RDFIKNMITGTSQADCAVLI 115
L E ER + D K + + PG K ++ G D V +
Sbjct: 48 SLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV---DGIVFV 104
Query: 116 V-AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 156
+A S A TL +++ VNK D
Sbjct: 105 ADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRD 146
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 30.2 bits (69), Expect = 1.2
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 101 NMITGTSQADCAVLIVAAGTGE--FEAGISK-----NGQT-REHALLAFTL--GVKQLIV 150
+MI I+A GTG + + K + H + F L +++++V
Sbjct: 1 HMI--------YAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVV 52
Query: 151 GVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
GV+ + E++ + K+
Sbjct: 53 GVHGDW-------VSHAEDLVDKYLPLYKE 75
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.0 bits (67), Expect = 1.4
Identities = 39/244 (15%), Positives = 65/244 (26%), Gaps = 62/244 (25%)
Query: 10 IVVIGHVDSGKSTTTGHLI----------------------YKCGGIDKRTIEKFEKEAQ 47
+V +G SGK+T TG Y+ ID R E+ +
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEP-SIDVREFVTVEEIMR 75
Query: 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPG------HRDFIKN 101
E + D+L + + + + E YV +ID PG +F
Sbjct: 76 EGYGPNGAIVESYDRLMEKFNEYLNK---ILRLEKENDYV-LIDTPGQMETFLFHEFGVR 131
Query: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL----IVGVNKMDS 157
+ V I + I K L +L I +NK+D
Sbjct: 132 -LMENLPYPLVVYIS-------DPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183
Query: 158 TEPPYSEA---------RFEEIKKEVSGYIKKIGYNPAT--------VAFVPISGWHGDN 200
E K + Y + V + +S +
Sbjct: 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243
Query: 201 MLEV 204
++
Sbjct: 244 FEDL 247
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.1 bits (67), Expect = 1.6
Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 49/218 (22%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ + +N+ V G SGKS+ L R I E+ A + G
Sbjct: 66 DSSVLNVAVTGETGSGKSSFINTL---------RGIGNEEEGAAKTGV------------ 104
Query: 64 KAERERGITIDIALWKFETSKF-YVTIIDAPGHRDF---IKNMITGTSQADCAVLIVAAG 119
+T++ ++ V D PG + + I+ +
Sbjct: 105 -----VEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISA 157
Query: 120 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR---------FEEI 170
T + A ++ K+ K+DS ++ ++I
Sbjct: 158 TR--------FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209
Query: 171 KKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKM 208
+ ++ G + + + + DK+
Sbjct: 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 16/40 (40%)
Query: 35 DKRTIEKFEKEAQEMGKGSFK-YAWVLDK-----LKAERE 68
+K+ ++K + S K YA D +KA E
Sbjct: 18 EKQALKKLQ--------ASLKLYA--DDSAPALAIKATME 47
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2,
protein structure initiative; 2.05A {Thermotoga
maritima}
Length = 278
Score = 29.8 bits (66), Expect = 2.0
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 264 VGRVETGVIKPGMLVTFAPANLTTEVK--------------SVEMHHEALQEAVPGDNVG 309
VG++ +K G ++T +V V E L+ G+ V
Sbjct: 185 VGKISRRYLKEGTVLTADMVKDPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETV- 243
Query: 310 FNVKNVSVKELRRGFVAGDSK 330
NV ++ G V
Sbjct: 244 -RAMNVESRKYVFGRVERGPV 263
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.4 bits (66), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 347 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRR 382
L P I+ GY P+L + + + E KE + +
Sbjct: 65 LKDPSYIAKGYQPILAMNEGYADVSYLETKELVEAQ 100
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171,
ISPD_THET8, ISPD, structural genomics PSI; 2.20A
{Thermus thermophilus HB8}
Length = 236
Score = 29.1 bits (66), Expect = 2.6
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 101 NMITGTSQADCAVLIVAAGTGE-FEAG----ISKNGQT-REHALLAFTLGVKQLIVGVNK 154
++ + +VLI AAG G G + G+T E L AF +++V +
Sbjct: 16 HIDDDDKHMEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAAF-RDAAEVLVAL-- 72
Query: 155 MDSTEPPYSEARFEEIKKEVSG 176
PP +E + G
Sbjct: 73 -----PPGAEPPKGLGAVFLEG 89
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 29.0 bits (66), Expect = 2.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 111 CAVLIVAAGTGE-FEAGISK-----NGQT-REHALLAF 141
++ AAG+GE AG K G EHAL
Sbjct: 3 TVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGL 40
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion;
NMR {Homo sapiens}
Length = 75
Score = 27.2 bits (60), Expect = 3.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 14 GHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMG 50
G V G + LI+K D++ KFE+E
Sbjct: 13 GLVPRGSHMSPECLIWKLLITIHDRKEFAKFEEERARAK 51
>1x9g_A Putative MAR1; structural genomics, protein structure initiative,
SGPP, PSI structural genomics of pathogenic protozoa
consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3
PDB: 1xn4_A
Length = 200
Score = 28.7 bits (64), Expect = 3.5
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 387 TEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGV 437
TE PK L I + + + FS P + D+ V G+
Sbjct: 65 TEHYPKGLGRIVPEITLPKTAHLIEKTRFSCVVPQVEELLEDVDNAVVFGI 115
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics,
PSI-biology, protei structure initiative; HET: PLP;
3.00A {Campylobacter jejuni subsp}
Length = 619
Score = 29.0 bits (65), Expect = 3.8
Identities = 6/73 (8%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 385 KTTEENPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGV-IKVNNN 443
K E + + + + +E +E + A + +G+ +++++
Sbjct: 135 KDRELINIGFIAAEMGHNITL-----TIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSA 189
Query: 444 HGNKYLPTYLDDN 456
+ + ++
Sbjct: 190 GVGIWAKSGGINS 202
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.6 bits (64), Expect = 4.2
Identities = 23/189 (12%), Positives = 51/189 (26%), Gaps = 51/189 (26%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
K+ + ++V+G GKS+T + + G + +
Sbjct: 32 KDMNSMTVLVLGKGGVGKSST-VNSL--IGE------QVVRVSPFQ-------------- 68
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRD----------FIKNMITGTSQADCA 112
+ + F + IID PG + IK + D
Sbjct: 69 -------AEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV-NRTIDVL 120
Query: 113 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGV-KQLIVGVNKMDSTEP------PYSEA 165
+ + + Q F + + ++ + + P +S
Sbjct: 121 LYVDRLDVYAVDELDK---QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177
Query: 166 RFEEIKKEV 174
R + + K +
Sbjct: 178 RSDSLLKTI 186
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG,
joint center for structural GENO PSI, protein structure
initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP:
c.68.1.13
Length = 234
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 112 AVLIVAAGTGE-FEAGISK-----NGQT-REHALLAFTL--GVKQLIVGVNKMD 156
+++AAG GE + K G+ E+ L F + +++ +
Sbjct: 15 VAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREW 68
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 28.4 bits (64), Expect = 5.2
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 110 DCAVLIVAAGTGE-FEAGISK-----NGQTR-EHALLAF--TLGVKQLIVGVNKMD 156
+ +++++AAG F + K +A K+++V + +
Sbjct: 3 EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNIT 58
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.4 bits (60), Expect = 8.1
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE 45
++ INI++ G +GK++ + + G + K KE
Sbjct: 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,292,451
Number of extensions: 461043
Number of successful extensions: 1371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 86
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)