RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13961
(459 letters)
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 349 bits (897), Expect = e-120
Identities = 191/241 (79%), Positives = 212/241 (87%), Gaps = 2/241 (0%)
Query: 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 61
GKEK+HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD
Sbjct: 1 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLD 60
Query: 62 KLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
KLKAERERGITIDIALWKFET K+ VT+IDAPGHRDFIKNMITGTSQADCA+LI+A G G
Sbjct: 61 KLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 120
Query: 122 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI 181
EFEAGISK+GQTREHALLAFTLGV+QLIV VNKMDS + + E+RF+EI KE S +IKK+
Sbjct: 121 EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK--WDESRFQEIVKETSNFIKKV 178
Query: 182 GYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRP 241
GYNP TV FVPISGW+GDNM+E + PW+KGW E K G GK L+EA+DAI PSRP
Sbjct: 179 GYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 238
Query: 242 T 242
T
Sbjct: 239 T 239
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 258 bits (660), Expect = 5e-85
Identities = 120/236 (50%), Positives = 165/236 (69%), Gaps = 12/236 (5%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N++VIGHVD GKST G L+ G ID++T+++ E+ A+++GK S K+A++LD+LK
Sbjct: 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 60
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ERERG+TI++ +FET K++ TIIDAPGHRDF+KNMITG SQAD A+L+V+A GE+E
Sbjct: 61 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
AG+S GQTREH +LA T+G+ QLIV VNKMD TEPPY E R++EI +VS +++ G+N
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 180
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSR 240
V FVP+ GDN+ S+ M W+ G L E LD + P +
Sbjct: 181 TNKVRFVPVVAPSGDNITHKSENMKWYNGP------------TLEEYLDQLELPPK 224
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 214 bits (547), Expect = 2e-68
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 30/233 (12%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T L Y + K +DK
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAEN--------------PNVEVKDYGDIDKAP 46
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ER RGITI+ A ++ET+K + + +D PGH D+IKNMITG +Q D A+L+V+A G
Sbjct: 47 EERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP 106
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
QTREH LLA +GV ++V +NK+D + P + ++ EV + + +
Sbjct: 107 -------QTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRDLLNQYEFP 156
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237
V + S + + K + +++ L++A+D +P
Sbjct: 157 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDK------IWELLDAIDEYIP 203
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 212 bits (539), Expect = 9e-67
Identities = 101/235 (42%), Positives = 152/235 (64%), Gaps = 16/235 (6%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 81
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 82 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 141
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI-GY 183
AG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GY
Sbjct: 142 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201
Query: 184 NPAT-VAFVPISGWHGDNMLEVSDK--MPWFKGWAIERKEGKADGKCLIEALDAI 235
N T V ++P+S + G N+ + D PW++ G L+E LD++
Sbjct: 202 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------GPSLLEYLDSM 244
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 203 bits (518), Expect = 6e-64
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 23/238 (9%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK--GSFKYAWVLD 61
K + + G+VD GKST G L++ I + +E +++++ G A ++D
Sbjct: 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD 65
Query: 62 KLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
L+AERE+GITID+A F T+K I D PGH + +NM TG S D A+++V A G
Sbjct: 66 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 122 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKI 181
QTR H+ +A LG+K ++V +NKMD FE IK + + + I
Sbjct: 126 VQT-------QTRRHSYIASLLGIKHIVVAINKMDLNGFDER--VFESIKADYLKFAEGI 176
Query: 182 GYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPS 239
+ P T+AFVP+S GDN++ S++ PW+ G L+E L+ + S
Sbjct: 177 AFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQ------------SLMEILETVEIAS 222
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 187 bits (477), Expect = 3e-58
Identities = 68/234 (29%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
K H+N+ IGHVD GK+T T + E G FK +D
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAP 45
Query: 65 AERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 124
ER RGITI+ A ++ T+ + D PGH D++KNMITGT+ D +L+VAA G
Sbjct: 46 EERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
QTREH LLA +GV+ ++V VNK D E ++ E+ + + GY
Sbjct: 106 -------QTREHLLLARQIGVEHVVVYVNKAD---AVQDSEMVELVELEIRELLTEFGYK 155
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPP 238
+ S ++ + L++A+D +P
Sbjct: 156 GEETPIIVGSALCALEQR--DPELGL------------KSVQKLLDAVDTYIPV 195
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 184 bits (469), Expect = 4e-58
Identities = 79/101 (78%), Positives = 89/101 (88%)
Query: 339 DFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGD 398
F A VIVLNHPGQIS GY+PVLDCHTAHIAC+F E+ EK DRR+GK E++PK LKSGD
Sbjct: 3 SFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGD 62
Query: 399 AAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIK 439
AA++ VPSKPMCVE+FSE+PPLGRFAVRDMRQTVAVGVIK
Sbjct: 63 AALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIK 103
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 153 bits (388), Expect = 4e-46
Identities = 57/102 (55%), Positives = 77/102 (75%)
Query: 338 QDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSG 397
+FTA++IV+ HP ++NGYTPVL HTA +AC+ +E+ K D RTG+ E+NP+ LK G
Sbjct: 2 DEFTARIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQG 61
Query: 398 DAAIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVIK 439
D AI+ P KP+CVE ++EFPPLGRFA+RDM +TV VG+I
Sbjct: 62 DVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIV 103
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 133 bits (335), Expect = 1e-38
Identities = 79/93 (84%), Positives = 86/93 (92%)
Query: 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEA 302
+KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGM+VTFAPA +TTEVKSVEMHHE L++
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG 60
Query: 303 VPGDNVGFNVKNVSVKELRRGFVAGDSKASPPK 335
VPGDNVGFNVKNVSVKE+RRG V GD+K PPK
Sbjct: 61 VPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPK 93
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 134 bits (338), Expect = 8e-38
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 16/211 (7%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
K + +NI V+GHVD GK+T + K + E ++G
Sbjct: 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWT--SKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 63 LKAERERGITIDIALWKFETSKF--YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120
K E + + KF ++ IDAPGH + M++G + D A+L+V
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV---- 117
Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKK 180
QTREH + +GVK LI+ NK+D + +++ +IK+
Sbjct: 118 --AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK----- 170
Query: 181 IGYNPATVAFVPISGWHGDNMLEVSDKMPWF 211
G V +P+S H N+ + + + +
Sbjct: 171 -GTWAENVPIIPVSALHKINIDSLIEGIEEY 200
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 128 bits (322), Expect = 1e-36
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 239 SRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTF--APANLTTEVKSVEMHH 296
+R EKP LP++ VY I G GTV G +E G++K G F N+ T V +EM H
Sbjct: 1 TRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFH 60
Query: 297 EALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPP 334
++L A GDN+G V+ + ++LRRG V + P
Sbjct: 61 KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQP 98
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 123 bits (311), Expect = 5e-35
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MLVTFAPANLTTEVKSVEM 294
P R +KP +P++DV+ I G GTV GR+E G +K G +V AP T V VEM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 295 HHEALQEAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPP 334
H + LQE + GDNVG ++ VS +E+ RG V + P
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 100
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 120 bits (303), Expect = 5e-34
Identities = 50/94 (53%), Positives = 66/94 (70%)
Query: 241 PTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQ 300
P +KPLR+P+QDVY I G+GTVPVGRVE+GV+K G + F PA EV+S+E HH +
Sbjct: 1 PVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMD 60
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFVAGDSKASPP 334
+A PGDN+GFNV+ V K+++RG V G P
Sbjct: 61 KAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPT 94
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 115 bits (290), Expect = 4e-32
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 243 EKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLT--TEVKSVEMHHEALQ 300
+KP LP++DV+ I G GTV GRVE G+IK G V T + VEM + L
Sbjct: 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLD 62
Query: 301 EAVPGDNVGFNVKNVSVKELRRGFV 325
E G+NVG ++ + +E+ RG V
Sbjct: 63 EGRAGENVGVLLRGIKREEIERGQV 87
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 111 bits (278), Expect = 2e-30
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEAL 299
R TE ++PL + I G GTV G + G++K G + P N++T+V+S++ E++
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESV 60
Query: 300 QEAVPGDNVGFNVKNVSVKELRRGFV 325
EA GD VG ++ V K++ RG +
Sbjct: 61 MEAKAGDRVGMAIQGVDAKQIYRGCI 86
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 107 bits (268), Expect = 6e-28
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 17/205 (8%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ +NI ++GHVD GK+T T L E K F A +
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSE-----ELRRGITIKIGFADAEIRRCP 56
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
R + V+ IDAPGH + M+ G S D A+L++AA
Sbjct: 57 NCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP 116
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
QTREH + +G K +I+ NK++ + + + +IK+ + G + +
Sbjct: 117 R------PQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE--- 167
Query: 184 NPATVAFVPISGWHGDNMLEVSDKM 208
+PIS HG N+ + +
Sbjct: 168 ---NAPIIPISALHGANIDVLVKAI 189
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 107 bits (268), Expect = 5e-27
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI + H+D+GK+TTT ++Y G I K + A +D ++ ERE
Sbjct: 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIG-------------EVHEGAATMDFMEQERE 54
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128
RGITI A+ + IIDAPGH DF + D A+++ + G
Sbjct: 55 RGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQG------- 107
Query: 129 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFE 168
Q+ A V ++ NKMD T
Sbjct: 108 VEPQSETVWRQAEKYKVPRIAF-ANKMDKTGADLWLVIRT 146
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release
factor ERF2, C-terminal domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 68
Score = 100 bits (251), Expect = 6e-27
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 336 ATQDFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALK 395
AT F AQ+ +L P ++ GY+ V+ HTA FA++ K D +T + +++ P
Sbjct: 2 ATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPPMFAT 60
Query: 396 SGDAAII 402
G I
Sbjct: 61 KGMKIIA 67
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 101 bits (253), Expect = 7e-27
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 240 RPTEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSV-EMHHEA 298
R P +P+ YK +GT+ G++E G IK V P N T EV ++ + E
Sbjct: 4 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE 61
Query: 299 LQEAVPGDNVGFNVKNVSVKELRRGFVAGDSK 330
+ ++ GD V V+ +++ G+V +K
Sbjct: 62 ISSSICGDQVRLRVRGD-DSDVQTGYVLTSTK 92
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 93.0 bits (231), Expect = 7e-24
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 241 PTEKPL-RLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEAL 299
++KP ++ +++V I G V +G VE+G+I G V + +E + E +
Sbjct: 4 LSKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG--IGGIVRIERNREKV 60
Query: 300 QEAVPGDNVGFNVKNVSVKELRRGFV 325
+ A+ GD +G +++ + ++++G V
Sbjct: 61 EFAIAGDRIGISIEG-KIGKVKKGDV 85
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 93.3 bits (231), Expect = 1e-21
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 49/221 (22%)
Query: 1 MGKEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59
+ + T++ N+ VI HVD GKST T L+ + G I + G+ F
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAA----------KAGEARF----- 54
Query: 60 LDKLKAERERGITIDIA----------------LWKFETSKFYVTIIDAPGHRDFIKNMI 103
D K E+ERGITI K + + F + +ID+PGH DF +
Sbjct: 55 TDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVT 114
Query: 104 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 163
D A+++V G QT A +K ++V +NK+D +
Sbjct: 115 AALRVTDGALVVVDTIEG-------VCVQTETVLRQALGERIKPVVV-INKVDR-----A 161
Query: 164 EARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEV 204
+ K+++ + V +S + + + +V
Sbjct: 162 LLELQVSKEDLYQTFART----VESVNVIVSTYADEVLGDV 198
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 83.1 bits (205), Expect = 3e-20
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 245 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQEAVP 304
LR P+Q V + G + +G++ G + P+ ++ VKS+ L++A P
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGP 65
Query: 305 GDNVGFNVKNVSVKELRRGFVAGDSKASP 333
G V +++ ++ RG + + P
Sbjct: 66 GQAVTLTMED--EIDISRGDLLVHADNVP 92
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 83.1 bits (205), Expect = 4e-20
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 335 KATQDFTAQVIVLNH-PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKA 393
+ + F A ++ + P G + T+++ A I + D T + E +
Sbjct: 1 QVSDAFDAMLVWMAEEPMLP--GKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASS 56
Query: 394 LKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRD--MRQTVAVGVIK 439
L+ + + + P+ ++ +S G F V D TVA G+I
Sbjct: 57 LQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 104
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 80.5 bits (198), Expect = 5e-19
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 238 PSRPTEKPLRLPLQDVYKIGGIGT--------VPVGRVETGVIKPGMLVTFAPANLT--- 286
P R KP ++ + + + GT V G + G +K G + P
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 287 ---------TEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPP 334
TE+ S++ + ++EA PG VG K ++ +L G V G PP
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP 120
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 75.8 bits (186), Expect = 2e-17
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 23/118 (19%)
Query: 240 RPTEKPLRLPLQDVYKI--------GGIGTVPVGRVETGVIKPGMLVTFAPAN------- 284
R + R+ + + I G V G + GV K G + P
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 285 -----LTTEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAGDSKASPP 334
LTT++ S+ + L++A PG +G ++ + G V G PP
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 118
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 78.5 bits (192), Expect = 4e-17
Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 48/237 (20%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGG---------------------IDKRTIEKFEKEAQE 48
+V +G SGK+T TG ID R E+ +E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 49 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQ 108
+ D+L + + +ID PG + G
Sbjct: 63 GYGPNGAIVESYDRL----MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 118
Query: 109 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL----IVGVNKMDSTEPP--- 161
+ + + I K L +L I +NK+D
Sbjct: 119 MENLPYPLVVYI--SDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKE 176
Query: 162 ----------YSEARFEEIKKEVSGYIKKIGYNPA----TVAFVPISGWHGDNMLEV 204
Y AR + K+ V + +S + ++
Sbjct: 177 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 233
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 69.0 bits (169), Expect = 5e-15
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 244 KPLRLPL--QDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANLTTEVKSVEMHHEALQE 301
KP + L + V++ V V TGVI+ G + V+S++ E L+
Sbjct: 3 KPASIRLIPKLVFRQSKPAIGGV-EVLTGVIRQGYPLMNDDGETVGTVESMQDKGENLKS 61
Query: 302 AVPGDNVGFNVKNVSVKELRRGFVAGD 328
A G V +K+ + GD
Sbjct: 62 ASRGQKVAMAIKDAVYG---KTIHEGD 85
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 70.1 bits (170), Expect = 9e-15
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 37/203 (18%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ +IN+ + GH+D GK+T + L DKL
Sbjct: 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTS------------------------AHDKL 37
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 123
++RGITIDI F+ + +T++DAPGH D I+ +++ D
Sbjct: 38 PESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDL-------ALIVV 90
Query: 124 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGY 183
+A QT EH L+ + + T+ + + + + I + +
Sbjct: 91 DAKEGPKTQTGEHMLILDHFNIPI------IVVITKSDNAGTEEIKRTEMIMKSILQSTH 144
Query: 184 NPATVAFVPISGWHGDNMLEVSD 206
N + +PIS G + E+ +
Sbjct: 145 NLKNSSIIPISAKTGFGVDELKN 167
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 71.5 bits (174), Expect = 1e-14
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
+ ++GH SGK+T T L+YK G ++R E G D +
Sbjct: 4 TVALVGHAGSGKTTLTEALLYKTGAKERR-------GRVEEG------TTTTDYTPEAKL 50
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121
T+ + V ++DAPG+ DF+ + AD A++ V+A G
Sbjct: 51 HRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG 103
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 61.1 bits (148), Expect = 2e-12
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDA 399
F A V VL +T + + ++ G + + GD
Sbjct: 4 FEASVYVLKKE--EGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGV------EMVMPGDN 55
Query: 400 AIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ KP+ +E RFA+R+ +TV GV+
Sbjct: 56 VTFTVELIKPVALEEGL------RFAIREGGRTVGAGVV 88
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 60.4 bits (146), Expect = 6e-12
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 23/111 (20%)
Query: 240 RPTEKPLRLPLQDVYKI--------GGIGTVPVGRVETGVIKPGMLVTFAPANLT----- 286
R + + + + + G V G + G+ K + P
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 287 -------TEVKSVEMHHEALQEAVPGDNVGFNVK---NVSVKELRRGFVAG 327
T++ S+ E +EA PG V +++ + G +
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT 111
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 55.0 bits (132), Expect = 2e-10
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 340 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKALKSGDA 399
AQV +L + P + + ++ + GK + G+
Sbjct: 4 VEAQVYILTKEEGG--RHKPFVSHFMPVMFSLTWDMACRIILPPGK------ELAMPGED 55
Query: 400 AIIVLVPSKPMCVESFSEFPPLGRFAVRDMRQTVAVGVI 438
+ L+ +PM +E RF +RD +T+ G++
Sbjct: 56 LKLTLILRQPMILEKGQ------RFTLRDGNRTIGTGLV 88
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 57.0 bits (136), Expect = 5e-10
Identities = 41/219 (18%), Positives = 71/219 (32%), Gaps = 48/219 (21%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 69
+ V+GHVD GK+T H+ + G ++ + E
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREA-------------GGITQHIGATEIPMDVIEG 54
Query: 70 GITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 129
+ + + + ID PGH F G + AD A+LIV G
Sbjct: 55 ICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-------F 107
Query: 130 NGQTREHALLAFTLGVKQLIVGVNKMD-----------------STEPPYSEARFEEIKK 172
QT+E + +V NK+D S + + + +
Sbjct: 108 KPQTQEALNILRMYRT-PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVY 166
Query: 173 EVSGYIKKIGYNPA----------TVAFVPISGWHGDNM 201
E+ G + + G+ V+ +PIS G+ +
Sbjct: 167 ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGI 205
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 37.7 bits (86), Expect = 0.001
Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 32/206 (15%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
+ I + ++G + GKST ++ K + + + +D
Sbjct: 4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD- 62
Query: 63 LKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 122
+ + + ++ +AD V+++
Sbjct: 63 -----------------TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVL------ 99
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
+ G TR+ +A + + V + E R++E K + I
Sbjct: 100 ----DATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 155
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKM 208
Y+P + S G N+ + D M
Sbjct: 156 YSP----LIFTSADKGWNIDRMIDAM 177
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 37.8 bits (87), Expect = 0.002
Identities = 34/248 (13%), Positives = 65/248 (26%), Gaps = 69/248 (27%)
Query: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 63
+ + +N+ V G SGKS+ L R I E+ A + G
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTL---------RGIGNEEEGAAKTGV------------ 91
Query: 64 KAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQ--ADCAVLIVAAGTG 121
+T++ +K V D PG T + +
Sbjct: 92 -----VEVTMERHPYKHPNIP-NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT 145
Query: 122 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR---------FEEIKK 172
F+ + A + + V K+DS ++ ++I+
Sbjct: 146 RFKK------NDIDIAKAISMMKKEFYFV-RTKVDSDITNEADGEPQTFDKEKVLQDIRL 198
Query: 173 EVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEAL 232
++ G + +S D L++ L
Sbjct: 199 NCVNTFRENGIAEPPI--FLLSNK----------------------NVCHYDFPVLMDKL 234
Query: 233 DAILPPSR 240
+ LP +
Sbjct: 235 ISDLPIYK 242
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.3 bits (72), Expect = 0.075
Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 47/222 (21%)
Query: 10 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL-KAERE 68
I++ G +SGK++ +L L
Sbjct: 6 IIIAGPQNSGKTS------------------------------------LLTLLTTDSVR 29
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMIT------GTSQADCAVLIVAAGTGE 122
+ L + VT++D PGH + + ++ +
Sbjct: 30 PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKK 89
Query: 123 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIG 182
+ G+ LI NK + + ++ E+ I++
Sbjct: 90 LTTTAEFLVDILSITESSCENGIDILIA-CNKSELFTARPPSKIKDALESEIQKVIERRK 148
Query: 183 YNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKAD 224
++ V D D + G+ E
Sbjct: 149 ---KSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVV 187
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.7 bits (65), Expect = 0.45
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 4 EKTHINIVVI-GHVDSGKSTTTGHLI 28
EKT+ V I G + GKST +L+
Sbjct: 1 EKTYSGFVAIVGKPNVGKSTLLNNLL 26
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.3 bits (65), Expect = 0.61
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETS--KFYVTIIDAPGHRDFIKNMITGTS 107
GK + + D + I ID + E + + I D G F
Sbjct: 18 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 77
Query: 108 QADCAVLIV 116
A +L+
Sbjct: 78 GAMGIMLVY 86
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 1.0
Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 30/166 (18%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
++ +G DSGK+ L+ + +I
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI----------------------------- 32
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128
+ I I + + S A V +V + + E
Sbjct: 33 -TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 91
Query: 129 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEV 174
+ L++ NK D ++ ++++KE+
Sbjct: 92 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 137
>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 110
Score = 27.7 bits (62), Expect = 1.1
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 272 IKPGMLVTFAPANLTTEVKSVEMHH--EALQEAVPGDNVGFNVKNV 315
IKPG +++F L VK++ +++ + E +NV VK++
Sbjct: 34 IKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSI 79
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.4 bits (62), Expect = 1.2
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
NI++ G GK+T L K G + +E G +LD+ + E
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 65
>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 327
Score = 28.2 bits (62), Expect = 1.9
Identities = 20/196 (10%), Positives = 63/196 (32%), Gaps = 11/196 (5%)
Query: 26 HLIYKCGGIDKRTIEKFEK-EAQEMGKGSFKYAWVLDKLKAERERGITI--DIALWKFET 82
HL+Y G+ ++ + E ++ K F L + + +++ D +
Sbjct: 34 HLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHP 93
Query: 83 SKFYVTIIDAPGHRD-FIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 141
+K+ + + FI++ L + ++ +K + LA+
Sbjct: 94 NKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDL-----AYQFPKNKPRKVHGDLGLAW 148
Query: 142 TLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNM 201
K + +F + ++V ++ G+ + ++ ++
Sbjct: 149 KSIKKLFTGDFIV--DPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDI 206
Query: 202 LEVSDKMPWFKGWAIE 217
++ + + +
Sbjct: 207 PALNGLVDFVNLATFD 222
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 27.7 bits (60), Expect = 2.0
Identities = 10/96 (10%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGG---IDKRTIEKFEKEAQEMGKGSFKYAWV 59
++ INI++ G +GK++ + + G ++ + K E +
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 60
Query: 60 LDKLKAERERGITIDIALWKFETSKFYVTIIDAPGH 95
+ I ++ +
Sbjct: 61 EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWF 96
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 28.3 bits (62), Expect = 2.3
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 164 EARFEEIKKEVSGYIKKIGYN-----PATVAFVPISGWHG 198
E ++++ +E Y+ GY P W
Sbjct: 10 EWNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTR 49
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 2.3
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 4 EKTHINIVVI-GHVDSGKST 22
+K++ + I G + GKST
Sbjct: 1 DKSYCGFIAIVGRPNVGKST 20
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.0 bits (58), Expect = 3.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 8 INIVVIGHVDSGKST 22
+ + ++G SGK+T
Sbjct: 3 MELTLVGLQYSGKTT 17
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.0 bits (58), Expect = 3.7
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 23/174 (13%)
Query: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSKFYVTI-----------IDAPGHRDF 98
GK + Y K++ + G+T I +++ K + +
Sbjct: 12 GKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEI 71
Query: 99 IKNMITGTSQADCAVLIVAAGTGEFEAGISKNG----QTREHALLAFTLGVKQLIVGVNK 154
+ + D AVL+V + E L + ++ VNK
Sbjct: 72 VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA-VNK 130
Query: 155 MDSTEPPYSEARFEEIKKEVSGYIKKIGYNPATVAFVPISGWHGDNMLEVSDKM 208
+D + F K E + + F+PIS GDN+ + +++
Sbjct: 131 LDKIKNVQEVINFLAEKFE-------VPLSEIDKVFIPISAKFGDNIERLKNRI 177
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.1 bits (59), Expect = 3.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 3 KEKTHINIVVIGHVDSGKSTTTGHLI 28
++ + I+V+G GKS+T +I
Sbjct: 28 EDVNSLTILVMGKGGVGKSSTVNSII 53
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 27.0 bits (60), Expect = 5.4
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 390 NPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRD 428
+ ++ + P V S+SE P G + D
Sbjct: 144 IAWNFAAAIFFVLCIGCIHPTLVGSWSEGVPFGIWPHID 182
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.5 bits (57), Expect = 5.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 8 INIVVIGHVDSGKST 22
+ +V++G + GKST
Sbjct: 1 LRMVIVGKPNVGKST 15
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.3 bits (56), Expect = 6.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 10 IVVIGHVDSGKSTTTGHLI 28
++++G + GKST L+
Sbjct: 3 VLIVGRPNVGKSTLFNKLV 21
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.3 bits (57), Expect = 6.5
Identities = 9/98 (9%), Positives = 28/98 (28%)
Query: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
+ ++G SGK T + + + + + +D+ K
Sbjct: 7 LRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 68 ERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMITG 105
+ +T + +++ + P + +
Sbjct: 67 DDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRA 104
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 26.2 bits (56), Expect = 6.6
Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 71/245 (28%)
Query: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
++ ++G+ ++GKS+ L+ + A
Sbjct: 3 DVGLVGYPNAGKSS----LLAAMTRAHPKI--------------------------APYP 32
Query: 69 RGITIDIALWKFETSKFYVTIIDAPGHRD----FIKNMITGTSQADCAVLIVAAGTGEFE 124
+ + T+ D PG + + +++ E
Sbjct: 33 FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE 92
Query: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARFEEIKKEVSGYIKKIGYN 184
+ +E L + +V +NK+D E +A + + +E
Sbjct: 93 PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE----------- 141
Query: 185 PATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILPPSRPTEK 244
+A +P+S G + L EAL A++ + P E
Sbjct: 142 --GLAVLPVSALTGAGLPA------------------------LKEALHALVRSTPPPEM 175
Query: 245 PLRLP 249
P +P
Sbjct: 176 PKPVP 180
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 281
Score = 26.2 bits (58), Expect = 7.6
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 390 NPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFAVRD 428
P A A + LV +P+ + ++ P G + D
Sbjct: 117 IPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLD 155
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 26.1 bits (57), Expect = 8.1
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 179 KKIGYNPATVAFVPISGWHGDNMLEVSDKMPWFKGWAIERKEGKADGKCLIEALDAILP 237
K G V+ V I G H +P F I+ + K K +
Sbjct: 14 LKAGVFYDKVSNVTIWGNHSTTQ------VPDFLNAKIDGRPVKEVIKRTKWLEEEFTI 66
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 26.3 bits (57), Expect = 8.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 10 IVVIGHVDSGKST 22
IVV+G SGKS+
Sbjct: 27 IVVVGSQSSGKSS 39
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 26.1 bits (57), Expect = 8.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 191 VPISGWHGDNMLEVSDKM 208
+P+ G GD+ DKM
Sbjct: 7 IPLFGQSGDDRYIAVDKM 24
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 26.2 bits (58), Expect = 9.0
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 390 NPKALKSGDAAIIVLVPSKPMCVESFSEFPPLGRFA 425
A + +VL +P+ + S+++ P G F
Sbjct: 145 LSWAFAAAIFFYLVLGFIRPVMMGSWAKAVPFGIFP 180
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 205
Score = 26.0 bits (57), Expect = 9.1
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 208 MPWFKGWAIERKEGKADGKCLIEALD 233
+ W KG+ EG L +A+
Sbjct: 152 LNWTKGFKASGAEGNNVVGLLRDAIK 177
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 25.9 bits (55), Expect = 9.2
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 8 INIVVIGHVDSGKST 22
I + G ++GKS+
Sbjct: 17 IEVAFAGRSNAGKSS 31
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 26.4 bits (58), Expect = 9.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 308 VGFNVKNVSVKELRRGFVAGDSKASPPKATQDFTAQV 344
++K + L GF G+++ PK+ TA +
Sbjct: 55 CLVDLKGM----LENGFKLGNAQIETPKSIGVATAIM 87
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.1 bits (55), Expect = 9.4
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 251 QDVYKIGGIGTVPVGRVETGVIKPGMLVTFAPANL---TTEVKSVEMHHEALQEAVPGDN 307
+ +K+ +GT+ V G I V + E+ S++ + + ++E G
Sbjct: 12 RQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYE 71
Query: 308 VGFNVKN 314
G +KN
Sbjct: 72 CGLTIKN 78
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.8 bits (55), Expect = 9.4
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 1 MGKEKTHINIVVIGHVDSGKSTTTGHL-------IYKCGGIDKRTIEKFEKEAQEMGKGS 53
+G K +V +G ++GK+T L + G
Sbjct: 7 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGG 66
Query: 54 FKYAWVLDKLKAERERGITIDIALWKFETSKFYVTIIDAPGHRDFIKNMI 103
A + K GI + E +D+ + I N+
Sbjct: 67 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 116
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.7 bits (55), Expect = 9.5
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAW 58
+ I+++G ++GK+T L + T K Q G +
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 67
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.5 bits (54), Expect = 9.5
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 8 INIVVIGHVDSGKST 22
+ +V+ G ++GKS+
Sbjct: 2 MKVVIAGRPNAGKSS 16
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 25.6 bits (55), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 9 NIVVIGHVDSGKST 22
NIV IG + SGKST
Sbjct: 2 NIVFIGFMGSGKST 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,769,977
Number of extensions: 85784
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 75
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)