BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13963
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 19/303 (6%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
+ ++L++ L +AGN+LV AAI + + L+ + NLF+ SLA ADL V LV+ F +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
G W++G C+ W + DV+C T+SI LC I++DRY+ I P RY +TR A I
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLT-PTYAVVSSCISFYVPCIVML 192
+W ++AL+SF+PI + R P L + P C +T YA+ SS ISFY+P ++M+
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMI 194
Query: 193 GIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVI 252
+ LR+Y A++ ++ I + TS + +HKA T+G+I
Sbjct: 195 FVALRVYREAKEQIRKIDRASK-----------------RKTSRVMLMREHKALKTLGII 237
Query: 253 MGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312
MG F LCW+PFF VNI+ F + +P + F WLGY+NSA NPIIY + +FR AFK
Sbjct: 238 MGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK 296
Query: 313 RIL 315
R+L
Sbjct: 297 RLL 299
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 21/303 (6%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
+ ++L++ L +AGN+LV AAI + + L+ + NLF+ SLA ADL V LV+ F +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
G W++G C+ W + DV+C T+SI LC I++DRY+ I P RY +TR A I
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLT-PTYAVVSSCISFYVPCIVML 192
+W ++AL+SF+PI + R P L + P C +T YA+ SS ISFY+P ++M+
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMI 194
Query: 193 GIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVI 252
+ LR+Y A++ ++ I + + +HKA T+G+I
Sbjct: 195 FVALRVYREAKEQIRKID-------------------RASKRKRVMLMREHKALKTLGII 235
Query: 253 MGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312
MG F LCW+PFF VNI+ F + +P + F WLGY+NSA NPIIY + +FR AFK
Sbjct: 236 MGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK 294
Query: 313 RIL 315
R+L
Sbjct: 295 RLL 297
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 176/335 (52%), Gaps = 16/335 (4%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 14 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 73
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 74 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 133
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 134 VWIVSGLTSFLPIQMHWYRATHQEAINCYANE-TCCDFFTNQAYAIASSIVSFYVPLVIM 192
Query: 192 LGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXAL--HITTTSSPYHVSDHKAAITV 249
+ +Y R++ A++ ++ I H SS + + +HKA T+
Sbjct: 193 VFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 252
Query: 250 GVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309
G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR
Sbjct: 253 GIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI 311
Query: 310 AFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
AF+ +L ++ AY G+ Y++ G+
Sbjct: 312 AFQELLCLRRSSLKAY----------GNGYSSNGN 336
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 176/335 (52%), Gaps = 16/335 (4%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 37 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 96
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 97 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 156
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 157 VWIVSGLTSFLPIQMHWYRATHQEAINCYANE-TCCDFFTNQAYAIASSIVSFYVPLVIM 215
Query: 192 LGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXAL--HITTTSSPYHVSDHKAAITV 249
+ +Y R++ A++ ++ I H SS + + +HKA T+
Sbjct: 216 VFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 275
Query: 250 GVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309
G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR
Sbjct: 276 GIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI 334
Query: 310 AFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
AF+ +L ++ AY G+ Y++ G+
Sbjct: 335 AFQELLCLRRSSLKAY----------GNGYSSNGN 359
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 176/335 (52%), Gaps = 16/335 (4%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 38 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 97
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 98 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 157
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 158 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 216
Query: 192 LGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXAL--HITTTSSPYHVSDHKAAITV 249
+ +Y R++ A++ ++ I H SS + + +HKA T+
Sbjct: 217 VFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 276
Query: 250 GVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309
G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR
Sbjct: 277 GIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI 335
Query: 310 AFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
AF+ +L ++ AY G+ Y++ G+
Sbjct: 336 AFQELLCLRRSSLKAY----------GNGYSSNGN 360
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 175/335 (52%), Gaps = 16/335 (4%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 364
Query: 192 LGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXAL--HITTTSSPYHVSDHKAAITV 249
+ +Y R++ A++ ++ I H SS + + +HKA T+
Sbjct: 365 VFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 424
Query: 250 GVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309
G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR
Sbjct: 425 GIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI 483
Query: 310 AFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
AF+ +L ++ AY G+ Y++ G+
Sbjct: 484 AFQELLCLRRSSLKAY----------GNGYSSNGN 508
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 172/333 (51%), Gaps = 40/333 (12%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L
Sbjct: 9 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 68
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 69 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 128
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEE-TCCDFFTNQAYAIASSIVSFYVPLVIM 187
Query: 192 LGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGV 251
+ +Y R++ A++ ++ I + + +HKA T+G+
Sbjct: 188 VFVYSRVFQEAKRQLQKI--------------------------DKFCLKEHKALKTLGI 221
Query: 252 IMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAF 311
IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR AF
Sbjct: 222 IMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAF 280
Query: 312 KRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
+ +L ++ AY G+ Y++ G+
Sbjct: 281 QELLCLRRSSLKAY----------GNGYSSNGN 303
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 46/312 (14%)
Query: 23 LSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82
L+I GN+LVC A++ + L+ + N F+ SLA AD+ V L + FA+ F
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--------ISTGF 70
Query: 83 CDT-----WIA-FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWL 136
C +IA F ++ + SSI +L AI++DRYI I+ PLRY+ VT A G IA W+
Sbjct: 71 CAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 130
Query: 137 LAALISFVPISLGLHRPPVPVELY-------EGELPTCALDLTPTYAVVS----SCISFY 185
L+ I P+ LG + P E EG++ D+ P +V +C+
Sbjct: 131 LSFAIGLTPM-LGWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--L 187
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKA 245
VP ++MLG+YLR++ A++ +K + + L S H A
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMES---------------QPLPGERARSTLQKEVH-A 231
Query: 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSIY 303
A ++ +I+G F LCW+P +N FC C P + + L ++NS NP IY+
Sbjct: 232 AKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR 291
Query: 304 NKEFRDAFKRIL 315
+EFR F++I+
Sbjct: 292 IREFRQTFRKII 303
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 151/312 (48%), Gaps = 46/312 (14%)
Query: 23 LSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82
L+I GN+LVC A++ + L+ + N F+ SLA AD+ V L + FA+ F
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAIT--------ISTGF 70
Query: 83 CDT-----WIA-FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWL 136
C +IA F ++ + SSI +L AI++DRYI I PLRY+ VT A G IA W+
Sbjct: 71 CAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWV 130
Query: 137 LAALISFVPISLGLHRPPVPVELY-------EGELPTCALDLTPTYAVVS----SCISFY 185
L+ I P+ LG + P E EG++ D+ P +V +C+
Sbjct: 131 LSFAIGLTPM-LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--L 187
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKA 245
VP ++MLG+YLR++ A++ +K + + L S H A
Sbjct: 188 VPLLLMLGVYLRIFAAARRQLKQMES---------------QPLPGERARSTLQKEVH-A 231
Query: 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSIY 303
A + +I G F LCW+P +N FC C P + + L ++NS NP IY+
Sbjct: 232 AKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYR 291
Query: 304 NKEFRDAFKRIL 315
+EFR F++I+
Sbjct: 292 IREFRQTFRKII 303
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 153/312 (49%), Gaps = 46/312 (14%)
Query: 23 LSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82
L+I GN+LVC A++ + L+ + N F+ S A AD+ V L + FA+ F
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--------ISTGF 70
Query: 83 CDT-----WIA-FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWL 136
C +IA F ++ + SSI +L AI++DRYI I+ PLRY+ VT A G IA W+
Sbjct: 71 CAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 130
Query: 137 LAALISFVPISLGLHRPPVPVELY-------EGELPTCALDLTPTYAVVS----SCISFY 185
L+ I P+ LG + P E EG++ D+ P +V +C+
Sbjct: 131 LSFAIGLTPM-LGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--L 187
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKA 245
VP ++MLG+YLR++ A++ +K + + L S H A
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMES---------------QPLPGERARSTLQKEVH-A 231
Query: 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSIY 303
A ++ +I+G F LCW+P +N FC C P + + L ++NS NP IY+
Sbjct: 232 AKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR 291
Query: 304 NKEFRDAFKRIL 315
+EFR F++I+
Sbjct: 292 IREFRQTFRKII 303
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 3/196 (1%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 223
Query: 192 LGIYLRLYCYAQKHVK 207
+ +Y R++ A++ +
Sbjct: 224 VFVYSRVFQEAKRQLN 239
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 11/105 (10%)
Query: 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPII 299
+ +HKA T+G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+I
Sbjct: 402 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 300 YSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
Y + +FR AF+ +L ++ AY G+ Y++ G+
Sbjct: 462 YC-RSPDFRIAFQELLCLRRSSLKAY----------GNGYSSNGN 495
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 3/196 (1%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 164 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 222
Query: 192 LGIYLRLYCYAQKHVK 207
+ +Y R++ A++ +
Sbjct: 223 VFVYSRVFQEAKRQLN 238
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 11/105 (10%)
Query: 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPII 299
+ +HKA T+G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+I
Sbjct: 401 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 460
Query: 300 YSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
Y + +FR AF+ +L ++ AY G+ Y++ G+
Sbjct: 461 YC-RSPDFRIAFQELLCLRRSSLKAY----------GNGYSSNGN 494
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 3/196 (1%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 45 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 104
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 105 KMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 164
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 165 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 223
Query: 192 LGIYLRLYCYAQKHVK 207
+ +Y R++ A++ +
Sbjct: 224 VFVYSRVFQEAKRQLN 239
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPII 299
+ +HKA T+G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+I
Sbjct: 402 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 300 YSIYNKEFRDAFKRIL 315
Y + +FR AF+ +L
Sbjct: 462 YC-RSPDFRIAFQELL 476
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 3/196 (1%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F L+
Sbjct: 13 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM 72
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 73 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 132
Query: 134 IWLLAALISFVPISLGLHRP--PVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVM 191
+W+++ L SF+PI + +R + Y E C YA+ SS +SFYVP ++M
Sbjct: 133 VWIVSGLTSFLPIQMHWYRATHQEAINCY-AEETCCDFFTNQAYAIASSIVSFYVPLVIM 191
Query: 192 LGIYLRLYCYAQKHVK 207
+ +Y R++ A++ +
Sbjct: 192 VFVYSRVFQEAKRQLN 207
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPII 299
+ +HKA T+G+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+I
Sbjct: 370 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 429
Query: 300 YSIYNKEFRDAFKRIL 315
Y + +FR AF+ +L
Sbjct: 430 YC-RSPDFRIAFQELL 444
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 5/203 (2%)
Query: 6 TPFSSP---PPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAAL 62
T +SP P V LS + +++ N+LV A+ ++R L +GNL++ SL++ADL V A+
Sbjct: 1 TTMASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAV 60
Query: 63 VMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWV 122
VM ++ L+ W G C W++ D + ST+SI ++ + +DRY ++ PLRY ++
Sbjct: 61 VMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120
Query: 123 TRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCI 182
T+ A TI W L + + +PI H E + T D+T + V+++ I
Sbjct: 121 TKTRASATILGAWFL-SFLWVIPILGWNHFMQQTSVRREDKCETDFYDVT-WFKVMTAII 178
Query: 183 SFYVPCIVMLGIYLRLYCYAQKH 205
+FY+P ++ML Y ++Y ++H
Sbjct: 179 NFYLPTLLMLWFYAKIYKAVRQH 201
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYS 301
+ KAA +G IM F+LCW+P+F ++ AFCK C + WLGY NS NP+IY
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYP 427
Query: 302 IYNKEFRDAFKRIL 315
+ N+ F+ FKRIL
Sbjct: 428 LCNENFKKTFKRIL 441
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 112/215 (52%), Gaps = 21/215 (9%)
Query: 5 TTPFSSPPPGVFLSL----LIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVA 60
+T S P + +L LI + GN LVC A+ +R L+ N + SLA+ADL VA
Sbjct: 29 STGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVA 88
Query: 61 ALVMSFALVNDLLG-YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYS 119
LVM + + ++ G W F CD ++ DVM T+SI NLCAIS+DRY + P+ Y
Sbjct: 89 TLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQ 148
Query: 120 RWVT----RKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTY 175
R+VA+ I +W+LA +S P+ G + G+ C++ P +
Sbjct: 149 HGTGQSSCRRVAL-MITAVWVLAFAVS-CPLLFGFNT--------TGDPTVCSIS-NPDF 197
Query: 176 AVVSSCISFYVPCIVMLGIYLRLY-CYAQKHVKSI 209
+ SS +SFY+P V + +Y R+Y Q+ K+I
Sbjct: 198 VIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNI 232
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC-IPGYWFKILTWLGYSNSAFNPI 298
+ + KA V +++G F++CW+PFF +++ C+TC + + TWLGY NSA NP+
Sbjct: 394 LREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPV 453
Query: 299 IYSIYNKEFRDAFKRIL 315
IY+ +N EFR AF +IL
Sbjct: 454 IYTTFNIEFRKAFLKIL 470
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 20 LIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFG 79
L ++I GNILV +I +R L+ + N FL SLA ADL + M+ + ++GYW G
Sbjct: 33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLG 92
Query: 80 PQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAA 139
P CD W+A D + S +S++NL IS DRY + PL Y T K+A IA W+L +
Sbjct: 93 PVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVL-S 151
Query: 140 LISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVV--SSCISFYVPCIVMLGIY 195
I + P L + +GE C + AV ++ +FY+P I+M +Y
Sbjct: 152 FILWAPAILFWQFIVGVRTVEDGE---CYIQFFSNAAVTFGTAIAAFYLPVIIMTVLY 206
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYS 301
+ K T+ I+ F++ W P+ + +I FC CIP + I WL Y NS NP Y+
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYA 442
Query: 302 IYNKEFRDAFKRILITNY 319
+ N F+ FK +L+ +Y
Sbjct: 443 LCNATFKKTFKHLLMCHY 460
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 34/225 (15%)
Query: 6 TPFSSPP---PGVFLSL---LIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFV 59
P +PP V++++ + L+I GN+LVC A++ + L+ + N F+ SLA AD+ V
Sbjct: 11 QPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAV 70
Query: 60 AALVMSFALVNDLLGYWMFGPQFCDT-----WIA-FDVMCSTSSILNLCAISLDRYIHIK 113
L + FA+ FC +IA F ++ + SSI +L AI++DRYI I+
Sbjct: 71 GVLAIPFAIT--------ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR 122
Query: 114 DPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELY-------EGELPT 166
PLRY+ VT A G IA W+L+ I P+ LG + P E EG++
Sbjct: 123 IPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCGQPKEGKNHSQGCGEGQVAC 181
Query: 167 CALDLTPTYAVVS----SCISFYVPCIVMLGIYLRLYCYAQKHVK 207
D+ P +V +C+ VP ++MLG+YLR++ A++ +
Sbjct: 182 LFEDVVPMNYMVYFNFFACV--LVPLLLMLGVYLRIFLAARRQLN 224
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 245 AAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSI 302
AA ++ +I+G F LCW+P +N FC C P + + L ++NS NP IY+
Sbjct: 393 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAY 452
Query: 303 YNKEFRDAFKRIL 315
+EFR F++I+
Sbjct: 453 RIREFRQTFRKII 465
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
L ++I GNILV A ++ L+ + N FL SLA ADL + + M+ ++ W
Sbjct: 20 GFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWA 79
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW-- 135
G CD W++ D + S +S++NL IS DRY I PL Y T K A I W
Sbjct: 80 LGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVI 139
Query: 136 ---LLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVML 192
L A I F +G P P E + L PT ++ +FY+P +M
Sbjct: 140 SFVLWAPAILFWQYFVGKRTVP-PGECFIQFLS------EPTITFGTAIAAFYMPVTIMT 192
Query: 193 GIYLRLYCYAQK 204
+Y R+Y +K
Sbjct: 193 ILYWRIYKETEK 204
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 232 TTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYS 291
T T Y + + KAA T+ I+ F++ W P+ + ++ FC +CIP ++ + WL Y
Sbjct: 359 TGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYI 418
Query: 292 NSAFNPIIYSIYNKEFRDAFKRILI 316
NS NP+ Y++ NK FR FK +L+
Sbjct: 419 NSTVNPVCYALCNKTFRTTFKTLLL 443
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 23 LSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82
L+I GN+LVC A++ + L+ + N F+ SLA AD+ V L + FA+ F
Sbjct: 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--------ISTGF 95
Query: 83 CDT-----WIA-FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWL 136
C +IA F ++ + SSI +L AI++DRYI I+ PLRY+ VT A G IA W+
Sbjct: 96 CAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 155
Query: 137 LAALISFVPISLGLHRPPVPVELY-------EGELPTCALDLTPTYAVVS----SCISFY 185
L+ I P+ LG + P E EG++ D+ P +V +C+
Sbjct: 156 LSFAIGLTPM-LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--L 212
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIR 210
VP ++MLG+YLR++ A++ + +
Sbjct: 213 VPLLLMLGVYLRIFLAARRQLADLE 237
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 245 AAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSI 302
AA ++ +I+G F LCW+P +N FC C P + + L ++NS NP IY+
Sbjct: 352 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAY 411
Query: 303 YNKEFRDAFKRIL 315
+EFR F++I+
Sbjct: 412 RIREFRQTFRKII 424
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 32/292 (10%)
Query: 27 GNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTW 86
GN LV I ++ N+++ +LA+AD V L + F + LLG+W FG C T
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVL-LTLPFQGTDILLGFWPFGNALCKTV 200
Query: 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPI 146
IA D +S L A+S+DRY+ I P+R T A IW LA+++ VP+
Sbjct: 201 IAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVG-VPV 259
Query: 147 SLGLHRPPVPVELYE--GELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQK 204
++ + V E E E+PT P +A+ SF VP +V+ CY+
Sbjct: 260 AI-MGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVI------SVCYSL- 311
Query: 205 HVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVP-- 262
++ +R V + + S + + V V++ F+ CW P
Sbjct: 312 MIRRLRGV-----------------RLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQ 354
Query: 263 -FFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR 313
F + + + T LGY NS NPI+Y+ ++ F+ F++
Sbjct: 355 VFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 44 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 103
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 104 FVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 162
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 163 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 216
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 217 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 253
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V +++ FL+CW+P+ V I +C + I + +++ +NP+IY + NK+
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313
Query: 307 FRD 309
FR+
Sbjct: 314 FRN 316
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 44 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 103
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 162
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 163 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 216
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 217 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 253
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V +++ FL+CW+P+ V I +C + I + +++ +NP+IY + NK+
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313
Query: 307 FRD 309
FR+
Sbjct: 314 FRN 316
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 43 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 102
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 103 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 161
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 162 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 215
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 216 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 252
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V +++ FL+CW+P+ V I +C + I + +++ +NP+IY + NK+
Sbjct: 253 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 312
Query: 307 FRD 309
FR+
Sbjct: 313 FRN 315
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 44 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 103
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 162
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 163 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 216
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 217 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 253
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V + + FL+CW+P+ V I +C + I + +++ +NP+IY + NK+
Sbjct: 254 MVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313
Query: 307 FRD 309
FR+
Sbjct: 314 FRN 316
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 44 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 103
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 162
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 163 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 216
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 217 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 253
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V +++ FL+CW+P+ V I + + I + +++ +NP+IY + NK+
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313
Query: 307 FRD 309
FR+
Sbjct: 314 FRN 316
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 39/303 (12%)
Query: 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY 75
++ LLI L N L + LR N L +LA+ADLF+ + L L GY
Sbjct: 43 YMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY 102
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
++FGP C+ F + ++ +L ++++RY+ + P+ R+ +G +A W
Sbjct: 103 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTW 161
Query: 136 LLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFYVP 187
++ AL P +G R + EG +C +D TP ++ + + F +P
Sbjct: 162 VM-ALACAAPPLVGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP 215
Query: 188 CIVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAI 247
IV+ +CY Q V +++ A S+ ++ +
Sbjct: 216 LIVI------FFCYGQL-VFTVKE----------------AAAQQQESATTQKAEKEVTR 252
Query: 248 TVGVIMGTFLLCWVPFFCVNI-IAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306
V +++ FL+CW+P+ V I + + I + +++ +NP+IY + NK+
Sbjct: 253 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 312
Query: 307 FRD 309
FR+
Sbjct: 313 FRN 315
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 29/285 (10%)
Query: 39 RGLRRIGNLFLASLAIADLFVAALVMSFAL--VNDLLGYWMFGPQFCDTWIAFDVMCSTS 96
+ L+ N+F+ +LA +D F +LV F L ++ L W+FG C + +
Sbjct: 63 KSLQTPANMFIINLAFSD-FTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 121
Query: 97 SILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPI-SLGLHRPPV 155
SI+ + IS+DRY I P+ S+ ++ + A I +WL + L + PI G +
Sbjct: 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYT--- 178
Query: 156 PVELYEGELPTCALDLTPTYAVVSSCI------SFYVPCIVMLGIYLRLYCYAQKHVKSI 209
EG L C+ D + S I F+ P +++ Y + H K +
Sbjct: 179 ----LEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM 234
Query: 210 RAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNII 269
A+ A + + + A I++ VI+ FLL W P+ V ++
Sbjct: 235 AAMA----------KRLNAKELRKAQAGANAEMRLAKISI-VIVSQFLLSWSPYAVVALL 283
Query: 270 AAFCK-TCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR 313
A F + Y ++ +++ NP+IYS+ + +FR+A +
Sbjct: 284 AQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQ 328
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 29/285 (10%)
Query: 39 RGLRRIGNLFLASLAIADLFVAALVMSFAL--VNDLLGYWMFGPQFCDTWIAFDVMCSTS 96
+ L+ N+F+ +LA +D F +LV F L ++ L W+FG C + +
Sbjct: 62 KSLQTPANMFIINLAFSD-FTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFM 120
Query: 97 SILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPI-SLGLHRPPV 155
SI+ + IS+DRY I P+ S+ ++ + A I +WL + L + PI G +
Sbjct: 121 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYT--- 177
Query: 156 PVELYEGELPTCALDLTPTYAVVSSCI------SFYVPCIVMLGIYLRLYCYAQKHVKSI 209
EG L C+ D + S I F+ P +++ Y + H K +
Sbjct: 178 ----LEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM 233
Query: 210 RAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNII 269
A+ A + + + A I++ VI+ FLL W P+ V ++
Sbjct: 234 AAMA----------KRLNAKELRKAQAGANAEMRLAKISI-VIVSQFLLSWSPYAVVALL 282
Query: 270 AAFCK-TCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR 313
A F + Y ++ +++ NP+IYS+ + +FR+A +
Sbjct: 283 AQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQ 327
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
S++ + + GN LV I ++ N+++ +LA+AD +A + F VN L+G W
Sbjct: 25 SIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWP 83
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLL 137
FG C I+ D +SI LC +S+DRYI + P++ + T + A C W+L
Sbjct: 84 FGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWIL 143
Query: 138 AALISF 143
++ I
Sbjct: 144 SSAIGL 149
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 259 CWVPFFCVNIIAAFCKTCIPGYWFKILTW-----LGYSNSAFNPIIYSIYNKEFRDAFKR 313
CW P II A IP F+ ++W LGY+NS NP++Y+ ++ F+ F+
Sbjct: 395 CWTPIHIYVIIKALI--TIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
Query: 314 ILI 316
I
Sbjct: 453 FCI 455
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 1/144 (0%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
S++ + + GN LV I ++ N+++ +LA+AD V M F L+ W
Sbjct: 30 SVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNSWP 88
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLL 137
FG C ++ D +SI L +S+DRYI + P++ + T A CIWLL
Sbjct: 89 FGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLL 148
Query: 138 AALISFVPISLGLHRPPVPVELYE 161
++ + I LG + V++ E
Sbjct: 149 SSSVGISAIVLGGTKVREDVDVIE 172
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 259 CWVPFFCVNIIAAFCKT-----CIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312
CW P ++ A T + Y+F I LGY+NS+ NPI+Y+ ++ F+ F+
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIA--LGYTNSSLNPILYAFLDENFKRCFR 464
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 23 LSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82
+ + GN+LV I L+ N+++ +LA+AD +A + F L+ W FG
Sbjct: 27 VGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADA-LATSTLPFQSAKYLMETWPFGELL 85
Query: 83 CDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALIS 142
C ++ D +SI L +S+DRYI + P++ + T A CIW+LA+ +
Sbjct: 86 CKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVG 145
Query: 143 FVPI 146
VPI
Sbjct: 146 -VPI 148
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 288 LGYSNSAFNPIIYSIYNKEFRDAFKRI 314
LGY+NS+ NP++Y+ ++ F+ F+++
Sbjct: 425 LGYANSSLNPVLYAFLDENFKRCFRQL 451
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 248 TVGVIMGTFLLCWVPFFCVNIIAAFCK--TCIPGYWFKILTWLGYSNSAFNPIIYSIYNK 305
TV +++ F+ CW P F + ++ CK TC + + L NS NPIIY++ NK
Sbjct: 422 TVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNK 481
Query: 306 EFRDAFKRIL 315
E R AF RI+
Sbjct: 482 EMRRAFIRIM 491
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 125/317 (39%), Gaps = 62/317 (19%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAAL--VMSFALVNDLLGY 75
+L+ LS+ GN LV I R R + +++L +LA+ADL A + + + VN
Sbjct: 19 ALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG---- 74
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACI- 134
W+FG C + S IL L IS+DRY+ I + +R +T+K + C+
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAI---VHATRTLTQKRHLVKFVCLG 131
Query: 135 -WLLAALIS--FVPISLGLH---RPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPC 188
W L+ +S F H PV E+ + + L ++ F VP
Sbjct: 132 CWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLR----ILPHTFGFIVPL 187
Query: 189 IVMLGIYLRLYCYAQKHVKSIRAVTXXXXXXXXXXXXXXALHITTTSSPYHVSDHKAAIT 248
VM L+CY + T + H+A
Sbjct: 188 FVM------LFCY--------------------------GFTLRTLFKAHMGQKHRAMRV 215
Query: 249 VGVIMGTFLLCWVPFFCVNIIAAFCKTCI----------PGYWFKILTWLGYSNSAFNPI 298
+ ++ FLLCW+P+ V + +T + G LG+ +S NPI
Sbjct: 216 IFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPI 275
Query: 299 IYSIYNKEFRDAFKRIL 315
IY+ + FR F +IL
Sbjct: 276 IYAFIGQNFRHGFLKIL 292
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 35 IYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCS 94
I + +R + N FL +LA A+ +AA + W +G +C F +
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAV 116
Query: 95 TSSILNLCAISLDRYIHIKDPL--RYSRWVTRKVAVGTIACIWLLAALISF 143
+SI ++ A++ DRY+ I PL R S T+ V I IW+LA L++F
Sbjct: 117 FASIYSMTAVAFDRYMAIIHPLQPRLSATATKVV----ICVIWVLALLLAF 163
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 255 TFLLCWVPFFCVNIIA-----AFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309
TF +CW+PF ++ + K I + I+ WL S++ +NPIIY N FR
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM-WLAMSSTMYNPIIYCCLNDRFRL 314
Query: 310 AFKRILITNYAASTAYTCC 328
FK A+ CC
Sbjct: 315 GFKH----------AFRCC 323
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Query: 13 PGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIAD-LFVAALVMSFALVND 71
P V+ + + +S+ NI+ +++ +++ LA AD LFV+ V+ F +
Sbjct: 24 PSVYTGVFV-VSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS--VLPFKISYY 80
Query: 72 LLGY-WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGT 130
G W FG + C A +SIL + IS+DR++ + P++ W T A T
Sbjct: 81 FSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFT 140
Query: 131 IACIWLLAALISFVPISLGLHRPPVP 156
IW L A+ VP+ L VP
Sbjct: 141 CLAIWAL-AIAGVVPLLLKEQTIQVP 165
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
W FG C + C+ ++ LN+ ++S+ RY+ I P + ++R I+ IW
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 136 LLAALISFVPI--SLGLHRPPVPVELYEGELPTCALDLTPTYAV--VSSCISFYVPCIVM 191
L +AL++ +P+ ++GL G + T +D V V++ +SF P +V+
Sbjct: 163 LASALLA-IPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVI 221
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 256 FLLCWVPFFCVNIIAAFCKTCIPG----------YWFKILTWLGYSNSAFNPIIYSIYNK 305
F++CW+P+ ++ FC Y++ + L Y++SA NPI+Y++ +
Sbjct: 418 FVVCWLPYHVRRLM--FCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSA 475
Query: 306 EFRDAF 311
FR F
Sbjct: 476 NFRQVF 481
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
S++ I GN LV + + LR + + + L++ADL + +A+ D + W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWY 113
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRY---IHIKDPLRYSRWVTRKVA-VGTIAC 133
FG C + SS+ L ISLDRY +H + R + + KV VG
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG---- 169
Query: 134 IWLLAALIS 142
+W+ A L++
Sbjct: 170 VWIPALLLT 178
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
S++ I GN LV + + LR + + + L++ADL + +A+ D + W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWY 113
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRY---IHIKDPLRYSRWVTRKVA-VGTIAC 133
FG C + SS+ L ISLDRY +H + R + + KV VG
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG---- 169
Query: 134 IWLLAALIS 142
+W+ A L++
Sbjct: 170 VWIPALLLT 178
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 232 TTTSSPYHVSDH---KAAITVGVIMGTFLLCWVP---------FFCVNIIAAFCK-TCIP 278
T T Y H KA T +++ F CW+P F + II C+
Sbjct: 395 TGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTV 454
Query: 279 GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILIT 317
W I L + + NPI+Y+ +F+ + + L +
Sbjct: 455 HKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTS 493
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
S++ I GN LV + + LR + + + L++ADL + +A+ D + W
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVANWY 113
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRY---IHIKDPLRYSRWVTRKVA-VGTIAC 133
FG C + SS+ L ISLDRY +H + R + + KV VG
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG---- 169
Query: 134 IWLLAALIS 142
+W+ A L++
Sbjct: 170 VWIPALLLT 178
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 232 TTTSSPYHVSDH---KAAITVGVIMGTFLLCWVP---------FFCVNIIAAFCK-TCIP 278
T T Y H KA T +++ F CW+P F + II C+
Sbjct: 395 TGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTV 454
Query: 279 GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILIT 317
W I L + + NPI+Y+ +F+ + + L +
Sbjct: 455 HKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTS 493
>pdb|1A3L|H Chain H, Catalysis Of A Disfavored Reaction: An Antibody Exo Diels-
Alderase-Tsa-Inhibitor Complex At 1.95 A Resolution
pdb|1RUQ|H Chain H, Crystal Structure (H) Of U.V.-Irradiated Diels-Alder
Antibody 13g5 Fab At Ph 8.0 With A Data Set Collected In
House.
pdb|1RUR|H Chain H, Crystal Structure (i) Of Native Diels-alder Antibody 13g5
Fab At Ph 8.0 With A Data Set Collected At Ssrl Beamline
9- 1
Length = 218
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 278 PGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAY--------TCCL 329
PG+ F+ W+G + +Y+ N++FR K IL + ++STAY
Sbjct: 41 PGHGFE---WIG---DIYPGGVYTTNNEKFRG--KAILTADTSSSTAYMQLSSLTSEDSA 92
Query: 330 CYVCCRGDAYAAGGDF 345
Y C R Y GGD+
Sbjct: 93 VYFCARAGGYYTGGDY 108
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 95 TSSILNLCAISLDRYIHIKDPLRYS 119
TSSI++LCAISLDRY I + Y+
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYN 25
>pdb|6FAB|H Chain H, Three-Dimensional Structure Of Murine Anti-P-
Azophenylarsonate Fab 36-71. 1. X-Ray Crystallography,
Site-Directed Mutagenesis, And Modeling Of The Complex
With Hapten
Length = 222
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 285 LTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAY--------TCCLCYVCCRG 336
L W+GY+N Y YN++F+ K L + ++STAY Y C R
Sbjct: 45 LEWIGYNNPGNG---YIAYNEKFKG--KTTLTVDKSSSTAYMQLRSLTSEDSAVYFCARS 99
Query: 337 DAYAAGGDFR-DY 348
+ Y GG ++ DY
Sbjct: 100 EYY--GGSYKFDY 110
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 96 SSILNLCAISLDRYIHIKDPLRYS 119
SSI++LCAISLDRY I + Y+
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYN 25
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 292 NSAFNPIIYSIYNKEFRDAFKRI 314
NS NPIIY++ +K+ R AF+ +
Sbjct: 13 NSTVNPIIYALRSKDLRHAFRSM 35
>pdb|1JFQ|H Chain H, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 222
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 285 LTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAY--------TCCLCYVCCRG 336
L W+GY+N Y YN++F+ K L + +++TAY Y C R
Sbjct: 45 LEWIGYNNPGNG---YITYNEKFKG--KTTLTVDKSSNTAYMQLRSLTSEDSAVYFCARS 99
Query: 337 DAYAAGGDFR-DY 348
+ Y GG ++ DY
Sbjct: 100 EYY--GGSYKFDY 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.141 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,541,005
Number of Sequences: 62578
Number of extensions: 383273
Number of successful extensions: 826
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 80
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)