Query psy13963
Match_columns 402
No_of_seqs 274 out of 2290
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 16:02:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.9E-45 4.1E-50 310.3 14.6 287 9-317 34-335 (423)
2 KOG4220|consensus 100.0 2.5E-43 5.4E-48 296.7 13.0 308 10-321 30-491 (503)
3 PHA03235 DNA packaging protein 100.0 6.6E-41 1.4E-45 302.0 26.4 273 8-317 30-323 (409)
4 PHA03234 DNA packaging protein 100.0 1E-41 2.2E-46 301.0 19.9 268 9-318 31-317 (338)
5 PHA02834 chemokine receptor-li 100.0 1.2E-39 2.6E-44 288.3 21.7 266 9-317 27-309 (323)
6 PHA02638 CC chemokine receptor 100.0 7E-38 1.5E-42 283.9 26.2 276 8-318 96-398 (417)
7 PHA03087 G protein-coupled che 100.0 2.9E-36 6.3E-41 269.7 26.3 271 9-319 39-325 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 2.5E-34 5.4E-39 248.3 14.4 251 27-300 1-257 (257)
9 KOG2087|consensus 100.0 1.1E-29 2.4E-34 212.9 9.8 278 3-318 17-307 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 4.9E-24 1.1E-28 181.4 9.3 252 22-315 2-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.9 7.3E-22 1.6E-26 175.3 19.1 273 19-317 5-317 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.9 1.4E-20 3.1E-25 162.8 14.4 268 19-315 2-273 (274)
13 PF05296 TAS2R: Mammalian tast 99.8 1.7E-16 3.7E-21 138.0 23.8 287 10-318 6-302 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 99.7 1E-17 2.2E-22 144.6 9.4 270 21-317 5-283 (283)
15 PF05462 Dicty_CAR: Slime mold 99.7 1.9E-15 4.1E-20 129.8 21.9 262 12-317 8-270 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.7 2E-15 4.4E-20 130.3 16.7 279 7-320 29-310 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 99.5 1.3E-12 2.9E-17 114.0 15.1 274 15-313 3-292 (292)
18 PF03402 V1R: Vomeronasal orga 99.4 3.1E-12 6.6E-17 106.9 11.4 250 40-311 6-263 (265)
19 PF11710 Git3: G protein-coupl 99.2 3.9E-10 8.4E-15 91.6 13.2 181 19-208 9-200 (201)
20 PF02101 Ocular_alb: Ocular al 99.2 5.4E-09 1.2E-13 89.6 18.4 222 15-272 31-269 (405)
21 KOG4193|consensus 99.1 2.5E-09 5.5E-14 100.3 16.2 251 18-315 327-579 (610)
22 PF10326 7TM_GPCR_Str: Serpent 99.1 1.2E-11 2.7E-16 109.2 0.3 269 16-312 4-307 (307)
23 PF10327 7TM_GPCR_Sri: Serpent 99.1 8.9E-09 1.9E-13 89.9 17.1 270 12-310 10-302 (303)
24 PF02118 Srg: Srg family chemo 99.1 2E-09 4.4E-14 93.6 11.8 259 18-311 5-275 (275)
25 PF10292 7TM_GPCR_Srab: Serpen 99.0 1.3E-07 2.8E-12 83.9 20.9 273 15-316 21-305 (324)
26 PF10319 7TM_GPCR_Srj: Serpent 98.9 8.1E-08 1.8E-12 81.5 15.5 274 14-311 8-310 (310)
27 PF10318 7TM_GPCR_Srh: Serpent 98.8 3.8E-07 8.2E-12 80.5 18.3 277 12-317 5-302 (302)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.7 2.3E-06 4.9E-11 72.9 17.7 131 10-140 5-138 (273)
29 KOG4564|consensus 98.6 1.7E-06 3.7E-11 78.0 16.2 259 16-320 150-422 (473)
30 PF04789 DUF621: Protein of un 98.6 7.5E-06 1.6E-10 67.3 16.6 264 18-314 20-295 (305)
31 PF00002 7tm_2: 7 transmembran 98.5 3.1E-08 6.7E-13 84.4 1.7 131 13-148 3-133 (242)
32 PF02117 7TM_GPCR_Sra: Serpent 98.3 0.00021 4.5E-09 63.3 19.4 268 12-310 22-302 (328)
33 PF03125 Sre: C. elegans Sre G 98.0 0.0018 3.8E-08 58.7 19.6 270 10-318 26-322 (365)
34 PF01534 Frizzled: Frizzled/Sm 97.8 0.0024 5.2E-08 56.1 17.5 154 12-174 10-176 (328)
35 PF02076 STE3: Pheromone A rec 97.6 0.0068 1.5E-07 52.3 16.9 194 44-270 25-221 (283)
36 PF10322 7TM_GPCR_Sru: Serpent 97.6 0.0021 4.6E-08 55.9 13.6 205 80-310 100-305 (307)
37 PF03383 Serpentine_r_xa: Caen 96.9 0.0014 3.1E-08 49.9 4.0 102 46-147 4-108 (153)
38 PF11970 Git3_C: G protein-cou 96.7 0.0024 5.2E-08 42.5 3.9 67 241-307 6-74 (76)
39 PF02175 7TM_GPCR_Srb: Serpent 96.4 0.3 6.4E-06 40.2 14.3 45 76-120 78-122 (236)
40 KOG4289|consensus 95.6 0.077 1.7E-06 54.2 9.3 176 79-312 2222-2399(2531)
41 PF06681 DUF1182: Protein of u 94.8 0.47 1E-05 38.0 9.6 99 14-117 44-151 (226)
42 PF05296 TAS2R: Mammalian tast 90.9 3 6.5E-05 36.8 10.2 65 186-269 188-252 (303)
43 KOG1056|consensus 80.7 52 0.0011 33.5 13.4 91 10-112 558-657 (878)
44 PF00003 7tm_3: 7 transmembran 75.3 9.6 0.00021 32.1 6.3 40 78-117 51-90 (238)
45 PHA03235 DNA packaging protein 75.1 71 0.0015 29.7 13.1 42 279-320 289-330 (409)
46 PF10325 7TM_GPCR_Srz: Serpent 69.9 72 0.0016 27.4 12.7 113 87-208 86-199 (267)
47 PF03619 Solute_trans_a: Organ 68.8 61 0.0013 28.1 9.7 25 183-207 8-32 (274)
48 KOG4220|consensus 67.7 52 0.0011 30.2 8.9 73 241-315 143-228 (503)
49 PF09973 DUF2208: Predicted me 50.8 80 0.0017 26.5 6.8 18 126-143 3-20 (233)
50 PF06454 DUF1084: Protein of u 47.2 2E+02 0.0042 25.2 17.9 28 245-272 204-231 (281)
51 PF11446 DUF2897: Protein of u 45.1 21 0.00045 22.1 2.0 22 12-33 3-24 (55)
52 PF13853 7tm_4: Olfactory rece 41.8 0.44 9.5E-06 36.7 -7.2 109 129-268 5-119 (144)
53 PF11368 DUF3169: Protein of u 35.6 2.8E+02 0.0061 23.6 9.0 29 241-269 91-119 (248)
54 PRK04989 psbM photosystem II r 31.7 71 0.0015 17.5 2.4 24 175-198 6-29 (35)
55 COG1230 CzcD Co/Zn/Cd efflux s 31.0 1.3E+02 0.0029 26.3 5.5 67 13-82 123-190 (296)
56 TIGR03038 PS_II_psbM photosyst 30.9 80 0.0017 17.1 2.5 23 176-198 7-29 (33)
57 PF05478 Prominin: Prominin; 30.3 2.7E+02 0.0058 28.7 8.4 76 175-273 412-487 (806)
58 COG1862 YajC Preprotein transl 30.0 67 0.0015 22.7 2.9 34 184-217 12-45 (97)
59 PF01528 Herpes_glycop: Herpes 29.9 4.4E+02 0.0095 24.2 12.4 34 175-208 301-334 (374)
60 PF14126 DUF4293: Domain of un 29.3 2.7E+02 0.0059 21.5 11.5 60 247-311 81-140 (149)
61 PRK13664 hypothetical protein; 28.8 61 0.0013 20.0 2.1 15 16-30 10-24 (62)
62 PF02699 YajC: Preprotein tran 27.1 1.3E+02 0.0029 20.4 3.9 28 189-216 10-37 (82)
63 PF11119 DUF2633: Protein of u 26.6 1.7E+02 0.0037 18.4 4.0 31 241-271 5-35 (59)
64 PF02932 Neur_chan_memb: Neuro 25.9 3.4E+02 0.0074 21.6 7.9 19 185-203 2-20 (237)
65 PF05151 PsbM: Photosystem II 25.6 1.2E+02 0.0026 16.2 3.7 23 176-198 7-29 (31)
66 PF01102 Glycophorin_A: Glycop 24.8 26 0.00056 25.9 0.1 19 22-40 74-92 (122)
67 CHL00080 psbM photosystem II p 24.8 1.1E+02 0.0023 16.7 2.3 23 176-198 7-29 (34)
68 PF15383 TMEM237: Transmembran 23.8 4.7E+02 0.01 22.5 7.4 48 99-146 150-197 (253)
69 PF06305 DUF1049: Protein of u 23.7 1.8E+02 0.0039 18.5 4.0 29 182-210 30-58 (68)
70 PF03904 DUF334: Domain of unk 23.7 2.4E+02 0.0052 23.5 5.3 32 174-205 196-227 (230)
71 PF02532 PsbI: Photosystem II 23.2 1.2E+02 0.0027 16.7 2.4 15 14-28 12-26 (36)
72 PF09889 DUF2116: Uncharacteri 22.7 45 0.00099 21.0 0.9 19 243-261 36-54 (59)
73 PF15086 UPF0542: Uncharacteri 22.1 2.4E+02 0.0053 18.6 5.2 35 174-208 19-54 (74)
74 PF14362 DUF4407: Domain of un 21.7 5.6E+02 0.012 22.5 9.6 23 93-115 49-71 (301)
75 PRK06531 yajC preprotein trans 21.3 89 0.0019 22.8 2.3 27 187-213 8-34 (113)
76 PHA03164 hypothetical protein; 21.1 87 0.0019 20.6 1.9 21 42-62 56-76 (88)
77 PF15102 TMEM154: TMEM154 prot 20.9 24 0.00051 26.9 -0.7 7 184-190 61-67 (146)
78 COG2322 Predicted membrane pro 20.0 3.7E+02 0.008 21.2 5.4 28 241-268 74-101 (177)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.9e-45 Score=310.35 Aligned_cols=287 Identities=24% Similarity=0.398 Sum_probs=236.8
Q ss_pred CCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhh
Q psy13963 9 SSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIA 88 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~ 88 (402)
...+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.........|.+|..+|++..|
T Consensus 34 ~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf 113 (423)
T KOG4219|consen 34 QQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNF 113 (423)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccc
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccc-------ccc
Q psy13963 89 FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVE-------LYE 161 (402)
Q Consensus 89 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 161 (402)
+......+|++++++||+|||.||.||++.+ .+++..+++++++|+++++++.|..+..........+ ...
T Consensus 114 ~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~ 191 (423)
T KOG4219|consen 114 FPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA 191 (423)
T ss_pred cchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence 9999999999999999999999999999855 7999999999999999999998877543332211110 001
Q ss_pred CCCCcccccCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCc
Q psy13963 162 GELPTCALDLT----PTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSP 237 (402)
Q Consensus 162 ~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
.....|..+.. ..|..+..++.+++|++++.+.|..|...+|..+......+ +..+
T Consensus 192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d--------------------~~~~ 251 (423)
T KOG4219|consen 192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD--------------------RKHE 251 (423)
T ss_pred cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc--------------------hhhH
Confidence 11122222221 23777888999999999999999999999997653221111 2223
Q ss_pred cccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhc----CCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHH
Q psy13963 238 YHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCK----TCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR 313 (402)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~ 313 (402)
..+..+|+.||++++++.|.+||+|+.+..++..... ......++....+++..|++.||+||++.|++||.++++
T Consensus 252 ~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~ 331 (423)
T KOG4219|consen 252 QLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRR 331 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhh
Confidence 3446788999999999999999999999999876533 234457888899999999999999999999999999999
Q ss_pred HHhh
Q psy13963 314 ILIT 317 (402)
Q Consensus 314 ~~~~ 317 (402)
.|++
T Consensus 332 ~fr~ 335 (423)
T KOG4219|consen 332 AFRW 335 (423)
T ss_pred hhhe
Confidence 9954
No 2
>KOG4220|consensus
Probab=100.00 E-value=2.5e-43 Score=296.69 Aligned_cols=308 Identities=31% Similarity=0.555 Sum_probs=252.7
Q ss_pred CChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhh
Q psy13963 10 SPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAF 89 (402)
Q Consensus 10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 89 (402)
-++++++...++++.++||++|++.+.-++++++..|+|+++||+||++.+.+.++....+.+.+.|.+|...|.+...+
T Consensus 30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLal 109 (503)
T KOG4220|consen 30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLAL 109 (503)
T ss_pred EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccc
Q psy13963 90 DVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCAL 169 (402)
Q Consensus 90 ~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (402)
-++...+|++.+++|++|||..|.+|+.|+...|.+++...+++.|++++++-.|.+ ..|.+.... ..-..+.|..
T Consensus 110 DYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaI-l~WqyivGk---rTv~~~eC~i 185 (503)
T KOG4220|consen 110 DYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAI-LFWQYIVGK---RTVPDGECYI 185 (503)
T ss_pred HHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHH-HhhHhheee---eecCCCceEE
Confidence 999999999999999999999999999999999999999999999999999985554 444433221 2334456665
Q ss_pred cCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC------------------------------
Q psy13963 170 DLT--PTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLP------------------------------ 217 (402)
Q Consensus 170 ~~~--~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------------------ 217 (402)
++. ....+-..+..|.+|+.+|+++|.+|++..+++.+.....+....
T Consensus 186 QFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~ 265 (503)
T KOG4220|consen 186 QFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKR 265 (503)
T ss_pred EeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCcccccc
Confidence 543 344555677889999999999999999999998877654332210
Q ss_pred ----------------------C-------------------------------------C------------------C
Q psy13963 218 ----------------------S-------------------------------------S------------------S 220 (402)
Q Consensus 218 ----------------------~-------------------------------------~------------------~ 220 (402)
. . .
T Consensus 266 ~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~ 345 (503)
T KOG4220|consen 266 EPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPT 345 (503)
T ss_pred ccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccccccccccc
Confidence 0 0 0
Q ss_pred CC--CC-------------CCCCc------------------------------cccccCCccccccchhhhhhHHHHHH
Q psy13963 221 SL--PR-------------PSPAL------------------------------HITTTSSPYHVSDHKAAITVGVIMGT 255 (402)
Q Consensus 221 ~~--~~-------------~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (402)
.+ +. ..... +...+......+|+|++|++.+|.+.
T Consensus 346 ~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlA 425 (503)
T KOG4220|consen 346 DQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLA 425 (503)
T ss_pred ccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 00 00 00000 00000001115689999999999999
Q ss_pred HHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhhhccc
Q psy13963 256 FLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAA 321 (402)
Q Consensus 256 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~~~~~ 321 (402)
|+++|+||.|+.++..+.+...+..+..+..+|.++|+-+||+.|.++|+.||+.+++++.|+++.
T Consensus 426 FIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~ 491 (503)
T KOG4220|consen 426 FILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKK 491 (503)
T ss_pred HHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999777553
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=6.6e-41 Score=302.04 Aligned_cols=273 Identities=15% Similarity=0.207 Sum_probs=203.5
Q ss_pred CCCChhHHHHHHHHHHHHHhhhheeeeeecCcCc--cccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCccc--cccccc
Q psy13963 8 FSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGL--RRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM--FGPQFC 83 (402)
Q Consensus 8 ~~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~--r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~--~~~~~C 83 (402)
....+..+++.+++++|++||+++++++.++++. ++..++|++|||++|++. ++.+|+.+.. ..|. .+...|
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~C 105 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGC 105 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCee
Confidence 3556889999999999999999999875443332 356789999999999987 4567766533 2343 346899
Q ss_pred chhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCC
Q psy13963 84 DTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGE 163 (402)
Q Consensus 84 ~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
++..++...+..+|++++++||+|||++|++|.+++. .+++++...++++|++++++++|+.++...............
T Consensus 106 k~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~ 184 (409)
T PHA03235 106 KFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPG 184 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCC
Confidence 9999999999999999999999999999999986544 468888889999999999999987654321110000000111
Q ss_pred CCcccccCCc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccC
Q psy13963 164 LPTCALDLTP--------TYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTS 235 (402)
Q Consensus 164 ~~~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
...|...+.. .|.....++.+++|+++++++|.+|++.++++.++
T Consensus 185 ~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~--------------------------- 237 (409)
T PHA03235 185 YETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK--------------------------- 237 (409)
T ss_pred cceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------------------
Confidence 2234322211 13344556678999999999999999999875321
Q ss_pred CccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcC----C-----CchhHHHHHHHHhhhccccchhHHhhcChH
Q psy13963 236 SPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKT----C-----IPGYWFKILTWLGYSNSAFNPIIYSIYNKE 306 (402)
Q Consensus 236 ~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~----~-----~~~~~~~~~~~l~~~~~~~np~iy~~~~~~ 306 (402)
+++|..+++++++++|++||+|+.+..++..+... . ....+..+..++.++|+++||+||.+++++
T Consensus 238 -----~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~ 312 (409)
T PHA03235 238 -----KRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGND 312 (409)
T ss_pred -----cchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHH
Confidence 23566778888899999999999998887654321 1 122456678889999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy13963 307 FRDAFKRILIT 317 (402)
Q Consensus 307 fR~~~~~~~~~ 317 (402)
||+++++.+++
T Consensus 313 FRk~~~~~l~~ 323 (409)
T PHA03235 313 FLKRFRQCFRG 323 (409)
T ss_pred HHHHHHHHHhh
Confidence 99999998854
No 4
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1e-41 Score=301.00 Aligned_cols=268 Identities=16% Similarity=0.234 Sum_probs=202.6
Q ss_pred CCChhHHHHHHHHHHHHHhhhheeeee--ecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchh
Q psy13963 9 SSPPPGVFLSLLIFLSIAGNILVCAAI--YTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTW 86 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~gl~~N~~vl~~i--~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~ 86 (402)
.+.+..+++.+++++|++||+++++++ .+++++|+++|+|++|||+||++.++.. |+.... ..+.|.+|+..|++.
T Consensus 31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~l-p~~~~~-~~~~w~fG~~lCk~~ 108 (338)
T PHA03234 31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCV-FFLTLN-REALFNFNQAFCQCV 108 (338)
T ss_pred HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH-HHHHHH-HhCCccCchhHHHHH
Confidence 557788999999999999999999955 4556678999999999999999997644 444433 345799999999999
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCc
Q psy13963 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPT 166 (402)
Q Consensus 87 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (402)
.++......+|++++++||+|||+||++|.+++. ++++....+++.|+.+++.++|++......... .....
T Consensus 109 ~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~------~~~~~ 180 (338)
T PHA03234 109 LFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKK------GNYGK 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecC------CCCCc
Confidence 9999999999999999999999999999987643 334444556667999999998887543221111 11123
Q ss_pred ccccCC--cchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCcc
Q psy13963 167 CALDLT--PTYAV------VSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPY 238 (402)
Q Consensus 167 ~~~~~~--~~~~~------~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
|...+. +.+.. ...++.+++|+++++++|..|.+.+++.+.
T Consensus 181 C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~------------------------------- 229 (338)
T PHA03234 181 CNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTE------------------------------- 229 (338)
T ss_pred CcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------------------
Confidence 433322 11111 122335689999999999999988865311
Q ss_pred ccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhc---C--CC----chhHHHHHHHHhhhccccchhHHhhcChHHHH
Q psy13963 239 HVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCK---T--CI----PGYWFKILTWLGYSNSAFNPIIYSIYNKEFRD 309 (402)
Q Consensus 239 ~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~---~--~~----~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~ 309 (402)
++++|++|++++++++|++||+|+.+..++..... . .. ....+.++..++++|+++||+||.+.+++||+
T Consensus 230 -~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~ 308 (338)
T PHA03234 230 -KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRL 308 (338)
T ss_pred -hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHH
Confidence 13578999999999999999999999877654321 1 11 12345677889999999999999999999999
Q ss_pred HHHHHHhhh
Q psy13963 310 AFKRILITN 318 (402)
Q Consensus 310 ~~~~~~~~~ 318 (402)
++++++++.
T Consensus 309 ~~~~~~~~~ 317 (338)
T PHA03234 309 RFTACFQDF 317 (338)
T ss_pred HHHHHHHHH
Confidence 999988553
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=288.33 Aligned_cols=266 Identities=21% Similarity=0.408 Sum_probs=203.8
Q ss_pred CCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhh
Q psy13963 9 SSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIA 88 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~ 88 (402)
...+..+++.+++++|++||+++++++.+++++ ++.|+|++|||++|++. ++.+|+.+... .++|.+|+..|++..+
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLG 103 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHH
Confidence 346778999999999999999999988776554 56899999999999986 56677766544 3569999999999999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCccc
Q psy13963 89 FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCA 168 (402)
Q Consensus 89 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (402)
+...+..+|++++++||+|||++|++|++++. .+.+++...++++|+++++.++|+......... .....|.
T Consensus 104 ~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~-------~~~~~C~ 175 (323)
T PHA02834 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT-------DNLKQCI 175 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC-------CCceEEe
Confidence 99999999999999999999999999998654 355677778889999999999887754221111 0111232
Q ss_pred ccCC-c--c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccc
Q psy13963 169 LDLT-P--T----YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVS 241 (402)
Q Consensus 169 ~~~~-~--~----~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (402)
.+.. . . +.....++.+++|+++++++|.+|++.+++++++ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~--------------------------------~ 223 (323)
T PHA02834 176 FNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNK--------------------------------N 223 (323)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------------------------------c
Confidence 1111 1 1 1122346788999999999999999988764210 2
Q ss_pred cchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCC--------ch--hHHHHHHHHhhhccccchhHHhhcChHHHHHH
Q psy13963 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCI--------PG--YWFKILTWLGYSNSAFNPIIYSIYNKEFRDAF 311 (402)
Q Consensus 242 ~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~--------~~--~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~ 311 (402)
++|..|++++++++|++||+|+.+..++..+.+... .. ....+..+++++|+++||+||.+.+++||+++
T Consensus 224 ~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~ 303 (323)
T PHA02834 224 KTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF 303 (323)
T ss_pred cceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHH
Confidence 457788999999999999999999888765532110 01 12346778999999999999999999999999
Q ss_pred HHHHhh
Q psy13963 312 KRILIT 317 (402)
Q Consensus 312 ~~~~~~ 317 (402)
++++++
T Consensus 304 ~~~~~~ 309 (323)
T PHA02834 304 KNMFCR 309 (323)
T ss_pred HHHHHh
Confidence 999843
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=7e-38 Score=283.85 Aligned_cols=276 Identities=20% Similarity=0.365 Sum_probs=213.0
Q ss_pred CCCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhh
Q psy13963 8 FSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWI 87 (402)
Q Consensus 8 ~~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~ 87 (402)
.......+++.+++++|++||+++++++. +|++|+.++++++|||++|++.. +.+|+.+... .++|.+++..|++..
T Consensus 96 ~~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~ 172 (417)
T PHA02638 96 SISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVIS 172 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHH
Confidence 35567788999999999999999998765 47788899999999999999875 5667666544 467999999999999
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCc---cccccCCC
Q psy13963 88 AFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVP---VELYEGEL 164 (402)
Q Consensus 88 ~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 164 (402)
++......++++.++++++|||+||++|.++++..+++.....++++|++++++++|+++......... ........
T Consensus 173 ~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~ 252 (417)
T PHA02638 173 ASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISN 252 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccC
Confidence 999999999999999999999999999999888778888888899999999999999886543221100 00000011
Q ss_pred CcccccCC------c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCcccccc
Q psy13963 165 PTCALDLT------P----TYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTT 234 (402)
Q Consensus 165 ~~~~~~~~------~----~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
..|..... . .+.....++.+++|+++++++|.+|++.+++.+++
T Consensus 253 ~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~-------------------------- 306 (417)
T PHA02638 253 YQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS-------------------------- 306 (417)
T ss_pred CeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------
Confidence 23332111 0 11222346678899999999999999998764211
Q ss_pred CCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCC--------------CchhHHHHHHHHhhhccccchhHH
Q psy13963 235 SSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--------------IPGYWFKILTWLGYSNSAFNPIIY 300 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~np~iy 300 (402)
+++|..|+++.++++|++||+|+.+..++..+.... .......+...++++|+++||++|
T Consensus 307 ------~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY 380 (417)
T PHA02638 307 ------KKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIY 380 (417)
T ss_pred ------ccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 346778999999999999999999998887653210 012345677789999999999999
Q ss_pred hhcChHHHHHHHHHHhhh
Q psy13963 301 SIYNKEFRDAFKRILITN 318 (402)
Q Consensus 301 ~~~~~~fR~~~~~~~~~~ 318 (402)
++.+++||+++++++++.
T Consensus 381 ~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 381 TLIGENFRMHLLMIFRNI 398 (417)
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988443
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=269.67 Aligned_cols=271 Identities=21% Similarity=0.328 Sum_probs=214.5
Q ss_pred CCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhh
Q psy13963 9 SSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIA 88 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~ 88 (402)
.+.+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|.........+|..++..|++..+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 667888999999999999999999998887 8899999999999999998765 45555555556778889999999999
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCccc
Q psy13963 89 FDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCA 168 (402)
Q Consensus 89 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (402)
+......+|.+++++|++|||++|++|++|+...+.+++..+++++|+++++.++|+.......... ....|.
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~-------~~~~C~ 189 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH-------ETLICC 189 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC-------CCceEE
Confidence 9999999999999999999999999999999989999999999999999999888776543332211 112232
Q ss_pred ccCC-c--c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccc
Q psy13963 169 LDLT-P--T----YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVS 241 (402)
Q Consensus 169 ~~~~-~--~----~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (402)
..+. . . .......+.+++|+++++++|.++++.++++.++ ++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~-------------------------------~~ 238 (335)
T PHA03087 190 MFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS-------------------------------KK 238 (335)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------------------hh
Confidence 2221 1 1 1122345678899999999999998888764321 13
Q ss_pred cchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhc---C-C-----CchhHHHHHHHHhhhccccchhHHhhcChHHHHHHH
Q psy13963 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCK---T-C-----IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312 (402)
Q Consensus 242 ~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~---~-~-----~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~ 312 (402)
++|..|++.+++++|++||+|+.+..++..... . . .......+...+..+|+++||+||++++++||++++
T Consensus 239 ~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~ 318 (335)
T PHA03087 239 NKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKK 318 (335)
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHH
Confidence 578899999999999999999998776654321 1 1 112344567788899999999999999999999999
Q ss_pred HHHhhhc
Q psy13963 313 RILITNY 319 (402)
Q Consensus 313 ~~~~~~~ 319 (402)
+.++...
T Consensus 319 ~~~~~~~ 325 (335)
T PHA03087 319 KSLKLMF 325 (335)
T ss_pred HHHHHHh
Confidence 9985543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=2.5e-34 Score=248.32 Aligned_cols=251 Identities=33% Similarity=0.587 Sum_probs=212.8
Q ss_pred hhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhhHhhhHHHHHHHHHHH
Q psy13963 27 GNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISL 106 (402)
Q Consensus 27 ~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iai 106 (402)
||+++++++.++|++|++.+++++|||++|++.++...|........+.|..++..|++..++..++..++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999998888888877777889999999999999999999999999999999
Q ss_pred HHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccCCc----chHHHHHHH
Q psy13963 107 DRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTP----TYAVVSSCI 182 (402)
Q Consensus 107 dRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 182 (402)
|||++|++|.+|++..+++++...++++|++++++++|+.+........ ......|..+... .+.....++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-----~~~~~~C~~~~~~~~~~~~~~~~~~~ 155 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVS-----DGSQSFCFIDFSSSSSQIYFIYFFIV 155 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEES-----TCCCEEEEESCSSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999987653332211 1114456665544 366777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhh
Q psy13963 183 SFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVP 262 (402)
Q Consensus 183 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P 262 (402)
.+++|+++++++|+.+++.++++.++...... ...++..++++|.++++.+++++|++||+|
T Consensus 156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P 217 (257)
T PF00001_consen 156 FFILPLIIILICYIRILRKLRRQRKRIKSQSS------------------SSSRRRSRRERRAARTLLIIVLVFLLCWLP 217 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTS------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeeeecccccccccccccccccccc------------------cccccccccccccccccccccccccccCCc
Confidence 99999999999999999999998876543221 122333457899999999999999999999
Q ss_pred HHHHHHHHHhhcCC--CchhHHHHHHHHhhhccccchhHH
Q psy13963 263 FFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIY 300 (402)
Q Consensus 263 ~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~np~iy 300 (402)
+.+..++....+.. .......+..++..+|+++||++|
T Consensus 218 ~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 218 YFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 99999998887666 467788899999999999999998
No 9
>KOG2087|consensus
Probab=99.96 E-value=1.1e-29 Score=212.90 Aligned_cols=278 Identities=21% Similarity=0.249 Sum_probs=218.6
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcC-------c
Q psy13963 3 TITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLG-------Y 75 (402)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~-------~ 75 (402)
|..+...+.++.+..+++.+++++||.+++......+...++..+++.|||.+|+++++-.......+.... .
T Consensus 17 pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai 96 (363)
T KOG2087|consen 17 PCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAI 96 (363)
T ss_pred cHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHH
Confidence 344555778888999999999999999999999888888888999999999999999987666555544332 1
Q ss_pred ccccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCC
Q psy13963 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPV 155 (402)
Q Consensus 76 ~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 155 (402)
|..+...|++.+|+..++...|++.++.+++||++.|++|++-++....+.+..+++..|+.+++.++.|++....+.
T Consensus 97 ~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~-- 174 (363)
T KOG2087|consen 97 DWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG-- 174 (363)
T ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc--
Confidence 333677999999999999999999999999999999999999888777788999999999999999999996532222
Q ss_pred ccccccCCCCccc----ccCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCcc
Q psy13963 156 PVELYEGELPTCA----LDLTPT-YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALH 230 (402)
Q Consensus 156 ~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (402)
..+.|- .+.... |+...++....+.+++++++|++++..+++.......
T Consensus 175 -------~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~------------------- 228 (363)
T KOG2087|consen 175 -------ASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL------------------- 228 (363)
T ss_pred -------ccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc-------------------
Confidence 123332 122223 6677788889999999999999999888764332111
Q ss_pred ccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHH-HHHHHHhhhccccchhHHhhcChHHHH
Q psy13963 231 ITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWF-KILTWLGYSNSAFNPIIYSIYNKEFRD 309 (402)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~np~iy~~~~~~fR~ 309 (402)
...+.++.+..++++-++||.|..++.+...++......... .+.....-+|+++||++|.++++.||+
T Consensus 229 ----------~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~ 298 (363)
T KOG2087|consen 229 ----------ISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKE 298 (363)
T ss_pred ----------chhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHH
Confidence 113677788888899999999999888877765443333322 444556678999999999999999999
Q ss_pred HHHHHHhhh
Q psy13963 310 AFKRILITN 318 (402)
Q Consensus 310 ~~~~~~~~~ 318 (402)
.++.+..+.
T Consensus 299 d~~~l~~k~ 307 (363)
T KOG2087|consen 299 DLFLLLSKV 307 (363)
T ss_pred HHHHHHhhc
Confidence 999987543
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.90 E-value=4.9e-24 Score=181.44 Aligned_cols=252 Identities=18% Similarity=0.219 Sum_probs=180.9
Q ss_pred HHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhhHhhhHHHHHH
Q psy13963 22 FLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNL 101 (402)
Q Consensus 22 ~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 101 (402)
++|++||..++.++.++|++|++.++++..+|++|++.+...+|...... ++.......|-.+.+...++..+....+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999877777666332 3345577789999999999999999999
Q ss_pred HHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccC--CcchHHHH
Q psy13963 102 CAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDL--TPTYAVVS 179 (402)
Q Consensus 102 ~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 179 (402)
++|++||++||+.|.+|++..+.+..........+.+..... .+....+++ ....|.... +.......
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~----~~~~~~~~~------~~~~C~pp~a~~~~~~~~~ 149 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTV----IGFLYRDDE------TIVICNPPLAFHGTASQIW 149 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHh----heeEecCCc------ccccCCCccccCccHHHHH
Confidence 999999999999999999988888555444444444444332 222222111 223333322 11222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhh
Q psy13963 180 SCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLC 259 (402)
Q Consensus 180 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 259 (402)
... .++..+++++.|...+..++++.++. .++++|..|.+...+++++++
T Consensus 150 ~~~-~~~inv~tvivY~i~~~~~~~k~~~~-----------------------------~~~~~kv~ksL~v~v~i~i~~ 199 (257)
T PF10320_consen 150 SYS-NIIINVITVIVYIITIIIFKRKSRSN-----------------------------SSRSKKVFKSLKVTVIIFIFS 199 (257)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHcccc-----------------------------chhHHHHHHHhhhheeeeeHH
Confidence 222 22333445566777776666654431 114689999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCc--hhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHH
Q psy13963 260 WVPFFCVNIIAAFCKTCIP--GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315 (402)
Q Consensus 260 ~~P~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~ 315 (402)
|.-..+...+....+.... ..+.....++..++.+.|.++|.++|+|||+++++++
T Consensus 200 w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 200 WFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 9998877776654433322 2355666788899999999999999999999999874
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.89 E-value=7.3e-22 Score=175.26 Aligned_cols=273 Identities=18% Similarity=0.191 Sum_probs=197.3
Q ss_pred HHHHHHHHhhhheeeeeecCcCccc-cchhHhHhHHHHHHHhHHHhhhHHHHHHhcCc-----ccc----cccccchhhh
Q psy13963 19 LLIFLSIAGNILVCAAIYTDRGLRR-IGNLFLASLAIADLFVAALVMSFALVNDLLGY-----WMF----GPQFCDTWIA 88 (402)
Q Consensus 19 ~~~~~gl~~N~~vl~~i~~~~~~r~-~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~-----~~~----~~~~C~~~~~ 88 (402)
++.++|+++|++.++++. +|.+|+ +.|.+++.+|++|++..+..++.......... ... ......+...
T Consensus 5 ~~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 356899999999999664 467776 78999999999999998887777665444321 011 1112334556
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhHhhCCCCc--CcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCc
Q psy13963 89 FDVMCSTSSILNLCAISLDRYIHIKDPLRY--SRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPT 166 (402)
Q Consensus 89 ~~~~~~~~s~~~~~~iaidRy~ai~~p~~y--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (402)
+...+...|.|..++||+.|++++.+|++. +++.+++.+...+.++++++.+++.+.++........ .. ......
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~-~~--~~p~~~ 160 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVS-DP--WVPPPN 160 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecc-cc--ccCCCc
Confidence 788899999999999999999999999864 3566788888888999999988887766432222111 00 000111
Q ss_pred cc------------c---cC----C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCC
Q psy13963 167 CA------------L---DL----T----PTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLP 223 (402)
Q Consensus 167 ~~------------~---~~----~----~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (402)
|. . +. . ..+.....++.-++|+++..++.+.+.+.+|+.++++++..+..
T Consensus 161 C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~------- 233 (318)
T PF10324_consen 161 CSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK------- 233 (318)
T ss_pred eeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc-------
Confidence 21 0 00 0 01222233444789999999999999999999888766544211
Q ss_pred CCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCC-----CchhHHHHHHHHhhhccccchh
Q psy13963 224 RPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC-----IPGYWFKILTWLGYSNSAFNPI 298 (402)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~np~ 298 (402)
.+++.+.++++..+++.|+++.+|..+..++..+.... .......+...+..+|+..|++
T Consensus 234 ---------------~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ 298 (318)
T PF10324_consen 234 ---------------SKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFF 298 (318)
T ss_pred ---------------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 12467899999999999999999999999997763322 1234566778899999999999
Q ss_pred HHhhcChHHHHHHHHHHhh
Q psy13963 299 IYSIYNKEFRDAFKRILIT 317 (402)
Q Consensus 299 iy~~~~~~fR~~~~~~~~~ 317 (402)
||..++.+||+.+|++++|
T Consensus 299 ic~~mSsqYR~t~~~~f~~ 317 (318)
T PF10324_consen 299 ICCFMSSQYRKTVKKLFGC 317 (318)
T ss_pred hhhhhhHHHHHHHHHHhcc
Confidence 9999999999999999954
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.85 E-value=1.4e-20 Score=162.77 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=195.2
Q ss_pred HHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCccccccc-ccchhhhhhhHhhhHH
Q psy13963 19 LLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQ-FCDTWIAFDVMCSTSS 97 (402)
Q Consensus 19 ~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s 97 (402)
+++++|++.|.++++.+.+.+++|++.+.+..+.|++|++.++..+....+....+.....+. .-.+.+.....+...+
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999998877666665555554333333 3344588889999999
Q ss_pred HHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcccccc---CCCCcccccCCcc
Q psy13963 98 ILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYE---GELPTCALDLTPT 174 (402)
Q Consensus 98 ~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 174 (402)
.++.++||++|++||..|.+|+++.+.+.+..++++.|++++....++............+... ...+.|. .
T Consensus 82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~-----~ 156 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCG-----N 156 (274)
T ss_pred HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccc-----h
Confidence 9999999999999999999999999999999999999999997776655432222111111111 1112232 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHH
Q psy13963 175 YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMG 254 (402)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 254 (402)
+..........+-.+++..+++.++.++++.+++... .+....+++++|.+..++.+..-+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~-------------------~~~~s~~r~rke~~f~~Qs~~Q~~ 217 (274)
T PF10328_consen 157 YSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISV-------------------SSSESKKRRRKEIRFFIQSFIQDL 217 (274)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------------------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555667777888888888887766511 011233446689999999999999
Q ss_pred HHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHH
Q psy13963 255 TFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315 (402)
Q Consensus 255 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~ 315 (402)
++++.++-+.+...+. + .....+........+.+++|++|+..+|+|+|+.+++..
T Consensus 218 ~~~i~~~~~~~~~~~~---~--~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 218 LYLIDLIFYFFIPPLS---S--NRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHHhc---c--ccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 9999988887764431 1 233344444555677889999999999999999998753
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.77 E-value=1.7e-16 Score=138.03 Aligned_cols=287 Identities=13% Similarity=0.075 Sum_probs=191.2
Q ss_pred CChhHHHHHHHHHHHHHhhhheeeeeecC---cCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchh
Q psy13963 10 SPPPGVFLSLLIFLSIAGNILVCAAIYTD---RGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTW 86 (402)
Q Consensus 10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~---~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~ 86 (402)
+.+..++..+..++|++||++++.+-..+ ++.-++.+.++.+||+++++.............+..+....+..++..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 44567778888999999999999887654 333448899999999999998777666666666555555567788889
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCc----ccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCC-cccccc
Q psy13963 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSR----WVTRKVAVGTIACIWLLAALISFVPISLGLHRPPV-PVELYE 161 (402)
Q Consensus 87 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (402)
.++..+....+.|..+++++--++.|.+..+.-- +.=.+....++.+.++++++..++.. ........ ......
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~-~~~~~~~~~~~~~~~ 164 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIP-LFIDNHINNNNTNNS 164 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeeeeccccccCC
Confidence 9999999999999999999999999987543211 11222334456666777763222111 11111111 000111
Q ss_pred CCCCccc-ccCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccc
Q psy13963 162 GELPTCA-LDLTPT-YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYH 239 (402)
Q Consensus 162 ~~~~~~~-~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
.+..... .+.... +......+..++|++++.++...+...++||.|+++......++++ .
T Consensus 165 ~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps------------------~ 226 (303)
T PF05296_consen 165 RNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPS------------------T 226 (303)
T ss_pred CcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC------------------c
Confidence 1111111 111111 2233344888999999999999999999999999886554333322 2
Q ss_pred cccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhhh
Q psy13963 240 VSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITN 318 (402)
Q Consensus 240 ~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~~ 318 (402)
+.+.|+.|++....+.|+++++-..+...-.. .........+...+..+++...|++-.+.|+++|+++++++++.
T Consensus 227 ~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 227 EAHIRAIKTMISFLILYIIYFLSLILSFLSFF---FPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 35678888888766666665544332211111 12334566788888999999999999999999999999998554
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.73 E-value=1e-17 Score=144.63 Aligned_cols=270 Identities=17% Similarity=0.176 Sum_probs=176.4
Q ss_pred HHHHHHhhhheeeeeecCcC----ccccchhHhHhHHHHHHHhHHHhhhHHHHHHhc--Cc--ccccccccchhhhhhhH
Q psy13963 21 IFLSIAGNILVCAAIYTDRG----LRRIGNLFLASLAIADLFVAALVMSFALVNDLL--GY--WMFGPQFCDTWIAFDVM 92 (402)
Q Consensus 21 ~~~gl~~N~~vl~~i~~~~~----~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~ 92 (402)
+++.++..+.+++++.+.|+ .+++.+.++.+.+++|++..+............ .+ ...++..-++.....+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34566677777776766544 457788999999999999877654433322221 11 12233345566667777
Q ss_pred hhhHHHHHHHHHHHHHHhHhhCCC-CcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccC
Q psy13963 93 CSTSSILNLCAISLDRYIHIKDPL-RYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDL 171 (402)
Q Consensus 93 ~~~~s~~~~~~iaidRy~ai~~p~-~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (402)
.........+++|++||.||++|. ++.+..++.+...++++-|+.++++++|.+.......+. ......-....
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~-----~~~~~~~~d~~ 159 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDN-----EENMSLFVDPE 159 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeec-----ccceeeecCHH
Confidence 888888999999999999999999 888888999999999999999999987644322111111 01111111111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHH
Q psy13963 172 TPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGV 251 (402)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (402)
..............+.++..+++|..++..+||+.++.. .+.++.+++|.+++.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s----------------------~~~s~~~~rE~~L~~~~~i 217 (283)
T PF10323_consen 160 FIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKS----------------------KSSSRSRRREIRLAIQVFI 217 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------HhhhhhhhHhHHHHHHHHH
Confidence 112233344555667778889999999999998764111 1122234478888888877
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhh
Q psy13963 252 IMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILIT 317 (402)
Q Consensus 252 i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~ 317 (402)
...++++...-+..........+.........+...+..+.+.+||+.-.+.|+++|+++++.++|
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 218 LFCAFFVILVYYIFSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 777666554444443333322121112233346667888899999999999999999999999854
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.72 E-value=1.9e-15 Score=129.76 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhh
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDV 91 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 91 (402)
...++..+..+++++|-++++..+...|++|++.+-++.-++++|++..+..+... ..++...++..|.+++++.+
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafliq 83 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLIQ 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHHH
Confidence 34566677789999999999999999999999999999999999998775443221 12333446778999999999
Q ss_pred HhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccC
Q psy13963 92 MCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDL 171 (402)
Q Consensus 92 ~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (402)
++..++.+..++||++-|+.+++... ..+|.-....+.+|.++++.++.++.... +......|....
T Consensus 84 ~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~---------~g~~G~WCWI~~ 150 (303)
T PF05462_consen 84 FFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGND---------YGPAGNWCWIKP 150 (303)
T ss_pred HhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CCCCCCceeecC
Confidence 99999999999999999999886532 24555567889999999999887764321 122233666544
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhH
Q psy13963 172 TPTYAVVSSCISFYVPCIVMLGIYLRL-YCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVG 250 (402)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (402)
.... .-+..+.+|+.++......+ ....+...+..+. . . ++. ++++.+....+.
T Consensus 151 ~~~~---~r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~--~-~-sd~------------------~~~~~~~~~kL~ 205 (303)
T PF05462_consen 151 EWDV---WRFALFYIPLWIIIIISAILVGITMRYIYRVIRN--G-V-SDN------------------KDKHLKYQLKLV 205 (303)
T ss_pred CCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-c-chh------------------HHHHHHHHHHHH
Confidence 3211 12234555554332222111 1111111111111 0 0 000 011233334466
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhh
Q psy13963 251 VIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILIT 317 (402)
Q Consensus 251 ~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~ 317 (402)
.-.++|++||+|..+-.+...+++ .+.+...+-..++.+.+++|.++|++.++-.++.+...+.+
T Consensus 206 ~Yp~ifiicw~fa~INRI~~~~~~--~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~ 270 (303)
T PF05462_consen 206 NYPLIFIICWIFATINRIYNFIGK--NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788999999999999999988753 34445555556777899999999999999989888877744
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.68 E-value=2e-15 Score=130.33 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=182.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCc-ccccccccch
Q psy13963 7 PFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY-WMFGPQFCDT 85 (402)
Q Consensus 7 ~~~~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~-~~~~~~~C~~ 85 (402)
+..+++.++.+.+.+++-.+....+++++.+++..|.+.+-++.-|++.|++.....-.........+. .-..+..-.+
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i 108 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYI 108 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhh
Confidence 456789999999999999999999999998877777899999999999999986554222222222221 1111222345
Q ss_pred hhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHH--HHHhHhhcCCCCCCccccccCC
Q psy13963 86 WIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALI--SFVPISLGLHRPPVPVELYEGE 163 (402)
Q Consensus 86 ~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
.+.+...+...+......++++|..-+..|......+.+++....+.+..+.++.. -.+|..+...... +.-+
T Consensus 109 ~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~s-----w~fD 183 (313)
T PF10321_consen 109 MGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMS-----WFFD 183 (313)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcce-----EecC
Confidence 55677788889999999999999999999887777777766554443333333222 2244433211110 0000
Q ss_pred CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccc
Q psy13963 164 LPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDH 243 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (402)
...-..+..+.|......+..++-.+.+.++|+.+...++++.+.... ++..+.++
T Consensus 184 P~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s------------------------~~~~k~~~ 239 (313)
T PF10321_consen 184 PMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS------------------------SQLSKAQR 239 (313)
T ss_pred ccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------------------------hhhhhhhH
Confidence 000001112234444455556666778888999998888887555311 11122456
Q ss_pred hhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhhhcc
Q psy13963 244 KAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYA 320 (402)
Q Consensus 244 ~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~~~~ 320 (402)
+...+..++.+.+.+.++-|..+.. ...++++..+......+++..+|+||..+|+..|+++++++++++.
T Consensus 240 qI~iQs~iIC~f~~i~a~iyv~m~f------~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~ 310 (313)
T PF10321_consen 240 QIFIQSVIICFFHAIAAVIYVYMQF------FPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKI 310 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeee------ecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHccccc
Confidence 6666666666666655544433322 2346788888899999999999999999999999999999965543
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.47 E-value=1.3e-12 Score=113.96 Aligned_cols=274 Identities=17% Similarity=0.172 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhhhheeeeeecC-cCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCc-----------ccccccc
Q psy13963 15 VFLSLLIFLSIAGNILVCAAIYTD-RGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY-----------WMFGPQF 82 (402)
Q Consensus 15 ~~~~~~~~~gl~~N~~vl~~i~~~-~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~-----------~~~~~~~ 82 (402)
+++.+.+.+|++.|+++++.+.++ ++.-+...+++.|-|++|++.++....... .....+ ..+++..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHH
Confidence 567889999999999999988665 444556788999999999998765443222 221211 2346778
Q ss_pred cchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccc--
Q psy13963 83 CDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELY-- 160 (402)
Q Consensus 83 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (402)
|.....+...+...+.+.+.+--..||..+.++.. ++++....+...+..++...+.......+.........
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~ 156 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence 88888888889999999999999999999987632 66777777888888887776655433222211111000
Q ss_pred cCCCCc--ccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCcc
Q psy13963 161 EGELPT--CALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPY 238 (402)
Q Consensus 161 ~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
..+.+. ......................+.....++.++..-||-.+..++.... .+++.
T Consensus 157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~------------------~S~~t 218 (292)
T PF10317_consen 157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSS------------------MSERT 218 (292)
T ss_pred CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh------------------cCHHH
Confidence 011100 0110000011111111111112222222333333223332222221111 11222
Q ss_pred ccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHH
Q psy13963 239 HVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKR 313 (402)
Q Consensus 239 ~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~ 313 (402)
++.+++..|.+.+..++=+++..|.....++..+... .......+...+..+.+.+||++...+-+.||++++|
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY-EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 3357889999999999999999998888887776553 3456667777788888999999999999999999875
No 18
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.40 E-value=3.1e-12 Score=106.94 Aligned_cols=250 Identities=15% Similarity=0.135 Sum_probs=167.3
Q ss_pred CccccchhHhHhHHHHHHHhHHHh-hhHHHHHHhcCcccccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCC-C
Q psy13963 40 GLRRIGNLFLASLAIADLFVAALV-MSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPL-R 117 (402)
Q Consensus 40 ~~r~~~~~ll~~lai~dll~~l~~-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~-~ 117 (402)
...++.+..+.+||++|++..+.- +|... .. .+...+++..||+..|+..++-..|+.+.+++++-.-+.|.-.. +
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~-~~-~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~ 83 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTM-AF-FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSR 83 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHH-HH-hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCch
Confidence 346789999999999999987653 34322 22 22224588999999999999999999999999998887775322 1
Q ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccCCcchH----HHHHHHHHHHHHHHH
Q psy13963 118 --YSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYA----VVSSCISFYVPCIVM 191 (402)
Q Consensus 118 --y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~ 191 (402)
.-+...++.....+...|++-+++.........................|......... .....+--++.+.+|
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM 163 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLM 163 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHH
Confidence 11122444556677888998888765333222221122111222234456543332221 122223335667788
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHH
Q psy13963 192 LGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAA 271 (402)
Q Consensus 192 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 271 (402)
+.....+...+.||+++.+..++...+++ ...|.|+++++++++..|+..+....++..+..
T Consensus 164 ~~aSgyMV~~L~RH~q~VqhIhs~~~s~r------------------~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~ 225 (265)
T PF03402_consen 164 IWASGYMVFLLYRHHQQVQHIHSSSLSPR------------------SSPETRATKTILLLVSTFVSFYGLSSILFIYLT 225 (265)
T ss_pred HhhhhhheeeeeecccccccCcCCCCCCC------------------CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHH
Confidence 88888999999999888776655433322 225899999999999999999999877655443
Q ss_pred hhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHH
Q psy13963 272 FCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAF 311 (402)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~ 311 (402)
.... ..++..+..++....+.+.|++....+++..+.+
T Consensus 226 ~~~~--~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 226 SFKN--SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HhcC--CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 3222 2344567778899999999999999999887654
No 19
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.21 E-value=3.9e-10 Score=91.58 Aligned_cols=181 Identities=16% Similarity=0.162 Sum_probs=118.5
Q ss_pred HHHHHHHHhhhheeeeeecC-cCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhhHhhhHH
Q psy13963 19 LLIFLSIAGNILVCAAIYTD-RGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSS 97 (402)
Q Consensus 19 ~~~~~gl~~N~~vl~~i~~~-~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s 97 (402)
+...+++++-+.+++.+... ++.+...+.+++||.++|++.++..+.........+.-..++..|..++++...+...+
T Consensus 9 ~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~s 88 (201)
T PF11710_consen 9 VISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEAS 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHH
Confidence 33344444433333333332 44455667799999999999998877655555555555557889999999999999999
Q ss_pred HHHHHHHHHHHHhHhhCCCC------cCc---ccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCccc
Q psy13963 98 ILNLCAISLDRYIHIKDPLR------YSR---WVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCA 168 (402)
Q Consensus 98 ~~~~~~iaidRy~ai~~p~~------y~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (402)
-+...+||++-|+.|.+|-. ... ...+..+..+..+.|++...++.. . .....+.+....|.
T Consensus 89 d~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i---~------~~~~~Y~~~g~WCW 159 (201)
T PF11710_consen 89 DLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFI---G------LGGPGYGPAGAWCW 159 (201)
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHh---c------cccCcccccCcEEE
Confidence 99999999999999999821 110 011122222333444444433322 1 11122455566787
Q ss_pred ccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13963 169 LDLTP-TYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKS 208 (402)
Q Consensus 169 ~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~ 208 (402)
.+... .+......+..++..+.+++.|+.++..+|++.|+
T Consensus 160 i~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 160 IPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred ECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 65543 45666677778888899999999999999987654
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=99.16 E-value=5.4e-09 Score=89.55 Aligned_cols=222 Identities=18% Similarity=0.215 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhhheeeeeecCcC----ccc--cchhHhHhHHHHHHHhHHHhhhHHHHHHhcCccc-----------
Q psy13963 15 VFLSLLIFLSIAGNILVCAAIYTDRG----LRR--IGNLFLASLAIADLFVAALVMSFALVNDLLGYWM----------- 77 (402)
Q Consensus 15 ~~~~~~~~~gl~~N~~vl~~i~~~~~----~r~--~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~----------- 77 (402)
.+-+.-+.+|+.|-++-++--.+... .++ ...-.+..+|++|++.++..+.......-.++..
T Consensus 31 avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~ 110 (405)
T PF02101_consen 31 AVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDI 110 (405)
T ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCcc
Confidence 34444556666666655552221110 111 1246888999999999887766555544333211
Q ss_pred ccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcc
Q psy13963 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPV 157 (402)
Q Consensus 78 ~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
+....|........+++.++.|.+.+-|+|-|+.+.+.- .+......-.+.|..+.++...-....+
T Consensus 111 wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly------- 177 (405)
T PF02101_consen 111 WPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAMLY------- 177 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccceee-------
Confidence 133578888888889999999999999999999886421 1223345677889888887753221111
Q ss_pred ccccCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCc
Q psy13963 158 ELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSP 237 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
.+....|....... +-..+..++|+++..+.+=.+++..-+.....-+.....-. ++
T Consensus 178 ---~Ps~~~Ce~~l~~a---lphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT-----------------~~ 234 (405)
T PF02101_consen 178 ---YPSISRCESGLEHA---LPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYT-----------------EN 234 (405)
T ss_pred ---cCCHHhhhhhhhhc---chhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc-----------------HH
Confidence 11222344332222 22233444555555554444443332222211111110000 00
Q ss_pred cccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHh
Q psy13963 238 YHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAF 272 (402)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~ 272 (402)
.++....+-+.++.+.++|.+||+|..+--++..+
T Consensus 235 ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~ 269 (405)
T PF02101_consen 235 ERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFY 269 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH
Confidence 11123344556788899999999998877665443
No 21
>KOG4193|consensus
Probab=99.12 E-value=2.5e-09 Score=100.26 Aligned_cols=251 Identities=13% Similarity=0.137 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccc-ccc-ccchhhhhhhHhhh
Q psy13963 18 SLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMF-GPQ-FCDTWIAFDVMCST 95 (402)
Q Consensus 18 ~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~-~~~-~C~~~~~~~~~~~~ 95 (402)
.+-+++++++=.+.+++..--|++++..+....+|+++=++.-+++ +.+.|.. ... .|.+.+++..++..
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~f--------L~~~~~~~~~~~~C~~~a~llhff~L 398 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLF--------LLGIDRTSTSVVLCIAAAILLHFFFL 398 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH--------hcccccccCcccccHHHHHHHHHHHH
Confidence 4444455555555555555556666655778888888833322221 1122222 222 79999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccCCcch
Q psy13963 96 SSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTY 175 (402)
Q Consensus 96 ~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (402)
++..++.+++++-|..++.-+. ....++......+.|..++++............. .......|+.+.....
T Consensus 399 aaF~Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-----~~~~~~~CWl~~~~~~ 470 (610)
T KOG4193|consen 399 AAFFWMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-----QYGTPRVCWLDTQNGF 470 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-----ccccCCceEEecCCce
Confidence 9999999999999986654332 2244444445468999988877654433322211 1222233777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHH
Q psy13963 176 AVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGT 255 (402)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 255 (402)
.+. ++.|+.+++.+++.++...-.+-.......... .++.+..+..+..+.+.++
T Consensus 471 ~~~-----F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~l~L~~l 525 (610)
T KOG4193|consen 471 IWS-----FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPI--------------------ASKLENISLIRSALALLFL 525 (610)
T ss_pred EEE-----EehHHHHHHHHHHHHHHHHHHHHhhcccccCcc--------------------hhhHHHHHHHHHHHHHHHH
Confidence 544 667777777777555444333222211111100 0001122557777777777
Q ss_pred HHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHH
Q psy13963 256 FLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315 (402)
Q Consensus 256 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~ 315 (402)
+-+.|.-...... .. ....+.+++.++..+++++=.++|++++++.|+..++.+
T Consensus 526 LGlTW~fgi~s~~-----~~-~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~ 579 (610)
T KOG4193|consen 526 LGLTWIFGIFSWL-----PG-TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWL 579 (610)
T ss_pred HHHHHHHHHHHHh-----cc-cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHh
Confidence 7777765433221 11 345677777888888899999999999999999999988
No 22
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=99.11 E-value=1.2e-11 Score=109.15 Aligned_cols=269 Identities=15% Similarity=0.159 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHhhhheeeeeecCcCccc-cchhHhHhHHHHHHHhHHHhhhHHHHHHhcC----------cccccccccc
Q psy13963 16 FLSLLIFLSIAGNILVCAAIYTDRGLRR-IGNLFLASLAIADLFVAALVMSFALVNDLLG----------YWMFGPQFCD 84 (402)
Q Consensus 16 ~~~~~~~~gl~~N~~vl~~i~~~~~~r~-~~~~ll~~lai~dll~~l~~~~~~~~~~~~~----------~~~~~~~~C~ 84 (402)
+..+.++++++.|.++++.+.++.+..- .-.+++...|+.|++++++-....-.....+ .+..+....+
T Consensus 4 ~~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (307)
T PF10326_consen 4 IQYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQ 83 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchhee
Confidence 3456778999999999998776544333 4567788899999998876543322221111 1223444556
Q ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcc-------
Q psy13963 85 TWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPV------- 157 (402)
Q Consensus 85 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~------- 157 (402)
+...+...+...+...++.--+.||.++++|.+.+. .+.++....+...-+.++.+.....+.....++.+.
T Consensus 84 ~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~-f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~ 162 (307)
T PF10326_consen 84 ILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRY-FSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELL 162 (307)
T ss_pred ehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhcc-ccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccc
Confidence 666677778888888888899999999999986433 444443333222222222222211111111110000
Q ss_pred ccccCCC----------------CcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCC
Q psy13963 158 ELYEGEL----------------PTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSS 221 (402)
Q Consensus 158 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 221 (402)
+.++.+. +....++..............+.+.++++|-.++++++++..+..
T Consensus 163 ~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------------ 230 (307)
T PF10326_consen 163 ENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------------ 230 (307)
T ss_pred cccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------------
Confidence 0000000 001111222223334445566777788888888887775433221
Q ss_pred CCCCCCCccccccCCccccccchhhhhhHHHHHH-HHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHH
Q psy13963 222 LPRPSPALHITTTSSPYHVSDHKAAITVGVIMGT-FLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIY 300 (402)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy 300 (402)
+++.++-++++.+.+++.+++ .++..+|..+......++-+ . .....+...+..+.|++||++-
T Consensus 231 -------------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~-~-~~~~~~~~~~~~~yP~iDpl~~ 295 (307)
T PF10326_consen 231 -------------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID-L-GFFSNIISILISLYPAIDPLPV 295 (307)
T ss_pred -------------ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC-C-CccccHhhhhEEEEeehhhhee
Confidence 112233578899999998877 88889999888777655322 2 3345566778889999999999
Q ss_pred hhcChHHHHHHH
Q psy13963 301 SIYNKEFRDAFK 312 (402)
Q Consensus 301 ~~~~~~fR~~~~ 312 (402)
.+.-++||++++
T Consensus 296 i~~ik~yR~~i~ 307 (307)
T PF10326_consen 296 IFIIKDYRKAIK 307 (307)
T ss_pred eEeeHHHHHhhC
Confidence 999999999874
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=99.09 E-value=8.9e-09 Score=89.92 Aligned_cols=270 Identities=15% Similarity=0.097 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeeecC-cCccccchhHh---HhHHHHHHHhHHHhhhHHHHHHhcCccccc------cc
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCAAIYTD-RGLRRIGNLFL---ASLAIADLFVAALVMSFALVNDLLGYWMFG------PQ 81 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~-~~~r~~~~~ll---~~lai~dll~~l~~~~~~~~~~~~~~~~~~------~~ 81 (402)
.....+-++++++++.|.+.++.+..+ +++.+-.++++ +...++|+-.+++.-|..+.....+. ..| +.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCCC
Confidence 455677788999999999999987665 44444333332 24568888888777776666554432 111 12
Q ss_pred ccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcccccc
Q psy13963 82 FCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYE 161 (402)
Q Consensus 82 ~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.+.....+..+......-.++.--+-|+-+|.+..+.+. .++...........+.++...+... ......++..+...
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~s~eeq~~yI~ 166 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFY-FSGMSREEQMEYIR 166 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHH-hcCCCHHHHHHHHH
Confidence 222233334444444445555556788999988776444 4444444445555555555543332 22222233333334
Q ss_pred CCCCcccccC-----------Ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCC
Q psy13963 162 GELPTCALDL-----------TPT--YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPA 228 (402)
Q Consensus 162 ~~~~~~~~~~-----------~~~--~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
.+.+.+.... ... .......+......++..++++.+++.+++.+++..+.+
T Consensus 167 ~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~t--------------- 231 (303)
T PF10327_consen 167 ENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQT--------------- 231 (303)
T ss_pred hhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH---------------
Confidence 4444443322 111 222333444555666677888888888888776654322
Q ss_pred ccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHH
Q psy13963 229 LHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFR 308 (402)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR 308 (402)
-++++++.+.+++..++-.+|-+|..+....... +....+....+......++|.+|-++..+.+++||
T Consensus 232 ----------y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~-~~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR 300 (303)
T PF10327_consen 232 ----------YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIF-EFEDAQVISEICLAIFSSHSSVNMIVLIITTPPYR 300 (303)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee-cCCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchh
Confidence 2367889999999999989999998887766554 34455677788888889999999999999999999
Q ss_pred HH
Q psy13963 309 DA 310 (402)
Q Consensus 309 ~~ 310 (402)
+-
T Consensus 301 ~f 302 (303)
T PF10327_consen 301 KF 302 (303)
T ss_pred hc
Confidence 84
No 24
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=99.05 E-value=2e-09 Score=93.62 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhhheeeeeecCcC--c-cccchhHhHhHHHHHHHhHHHhhhH-HHHHHhcC-------cccccccccchh
Q psy13963 18 SLLIFLSIAGNILVCAAIYTDRG--L-RRIGNLFLASLAIADLFVAALVMSF-ALVNDLLG-------YWMFGPQFCDTW 86 (402)
Q Consensus 18 ~~~~~~gl~~N~~vl~~i~~~~~--~-r~~~~~ll~~lai~dll~~l~~~~~-~~~~~~~~-------~~~~~~~~C~~~ 86 (402)
.+-++.+++.+..+++++.++++ . +++.+.+...-++.|++.-+...+. .......+ .....+...++.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 45567888889888888887776 4 5666777766677777664433221 11111000 012244567777
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCc
Q psy13963 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPT 166 (402)
Q Consensus 87 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (402)
.++...+..+.....+.++++|+-++..|.++.+..++.. ..+++++.++++... ++.+...... .........
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~-~~~~~~~~~~----~~~~~~~~~ 158 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFT-WNIFISPTYV----VYDNGGFSY 158 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHH-HHHHccccEE----EEECCceEE
Confidence 7888889999999999999999999999999988766544 334555555555443 2222211110 111111111
Q ss_pred ccccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchh
Q psy13963 167 CALDL-TPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKA 245 (402)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (402)
...+. ............+++..++.+++++...+++++.+++.+ +.|++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~~-----------------------------~~er~L 209 (275)
T PF02118_consen 159 SYNDTVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRIK-----------------------------SVERNL 209 (275)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------------------HHHHHH
Confidence 11111 111222333444445555556667777766665542221 145666
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHH
Q psy13963 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAF 311 (402)
Q Consensus 246 ~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~ 311 (402)
.+..++..+++++.-+...+.............+..........=..+...|++-.++++++|+++
T Consensus 210 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~v 275 (275)
T PF02118_consen 210 TIISFIISFVQLLIAIWQIINSFAFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQV 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhccC
Confidence 666666666555554444442111111111112333444444444556778999999999999863
No 25
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.99 E-value=1.3e-07 Score=83.89 Aligned_cols=273 Identities=13% Similarity=0.055 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHH---HHHHhc--C--cccccccccchhh
Q psy13963 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFA---LVNDLL--G--YWMFGPQFCDTWI 87 (402)
Q Consensus 15 ~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~---~~~~~~--~--~~~~~~~~C~~~~ 87 (402)
++..+++++|++.++..++.+..++..|....+++....++.++.++..+... +..... + +...+...|.+..
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR 100 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR 100 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence 44566778888888888887777788888889999999999998876543322 222222 1 2344666888888
Q ss_pred hhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcc
Q psy13963 88 AFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTC 167 (402)
Q Consensus 88 ~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (402)
....++...+..+..++.+||++|-.+.-+|.+. ++.-...+..+.|++++......+ ..... .......|
T Consensus 101 ~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~----~~~~~----~~~~~~yC 171 (324)
T PF10292_consen 101 IPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVY----SDEDF----PNERMYYC 171 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHH----hhhhc----cCccceee
Confidence 9999999999999999999999999999889874 333334444555555554332211 11110 12223345
Q ss_pred cccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccCCCCCCCCCCCCCCCccccccCCccccccchh
Q psy13963 168 ALDLTP-TYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRA-VTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKA 245 (402)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (402)
...... ...........++.-++..+.+..+++ +.++.+. .....-+++ =+.++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~f~~L~~----~Nkk~r~~~~~~~LS~R----------------YQl~ENl~s 231 (324)
T PF10292_consen 172 QASSSSSPYRVNIPFIVILVLQILALILFRYLLR----KNKKLRKQQKHSTLSER----------------YQLEENLRS 231 (324)
T ss_pred EEecCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchH----------------HhHHhHHHH
Confidence 443332 111111111111111111222222222 2222211 111000000 011245777
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhH-HHHHH--HHhhhccccchhHHhhcChHHHHHHHHHHh
Q psy13963 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYW-FKILT--WLGYSNSAFNPIIYSIYNKEFRDAFKRILI 316 (402)
Q Consensus 246 ~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~-~~~~~--~l~~~~~~~np~iy~~~~~~fR~~~~~~~~ 316 (402)
.+++..++.+..+..+.+.+..+.....+...+... ..+.. ...-.++.+-|++.....++.|++.++-+.
T Consensus 232 lr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~ 305 (324)
T PF10292_consen 232 LRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRLE 305 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 787777776666666666555555443333333222 22222 234457888899999899999988877663
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.91 E-value=8.1e-08 Score=81.49 Aligned_cols=274 Identities=11% Similarity=0.042 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHhhhheeeeeecCcCccc-cchhHhHhHHHHHHHhHHHhhhHHH--HHH-------hcCccccccc-c
Q psy13963 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRR-IGNLFLASLAIADLFVAALVMSFAL--VND-------LLGYWMFGPQ-F 82 (402)
Q Consensus 14 ~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~-~~~~ll~~lai~dll~~l~~~~~~~--~~~-------~~~~~~~~~~-~ 82 (402)
-.+--+.++++.+.|-+.++.+..+|+.+- .-.++++.-|+-|++.++.-+...+ ... ..++|..... .
T Consensus 8 ~~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l 87 (310)
T PF10319_consen 8 HYIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSEL 87 (310)
T ss_pred HHHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchH
Confidence 344456788999999999999988877655 4467888999999999876543222 111 1111211111 1
Q ss_pred cchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcccc---
Q psy13963 83 CDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVEL--- 159 (402)
Q Consensus 83 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--- 159 (402)
-.........+...|-..+..--+.||+++.+|...++.+.+.-....+...-.....+...-.+...... +..+.
T Consensus 88 ~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~-EiR~YIre 166 (310)
T PF10319_consen 88 GQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADD-EIRDYIRE 166 (310)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCH-HHHHHHHH
Confidence 12222233344456666677778899999999876555554444443333333333333332222222111 11010
Q ss_pred -----ccCCCCc-----ccc-cC-Cc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCC
Q psy13963 160 -----YEGELPT-----CAL-DL-TP-TYA-VVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRP 225 (402)
Q Consensus 160 -----~~~~~~~-----~~~-~~-~~-~~~-~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (402)
++.+... ... +. .+ .+. +....+...+. ...+..|..+-.++-++-++. +.
T Consensus 167 ~F~e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS-~~Si~~y~vlg~~I~~kL~~~---~~----------- 231 (310)
T PF10319_consen 167 SFREVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIIS-SYSIILYFVLGYKIMKKLNKM---SS----------- 231 (310)
T ss_pred HHHHHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc---hh-----------
Confidence 0111000 000 00 01 111 11111111111 122222332222222211110 00
Q ss_pred CCCccccccCCccccccchhhhhhHHHHHH-HHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcC
Q psy13963 226 SPALHITTTSSPYHVSDHKAAITVGVIMGT-FLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYN 304 (402)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~ 304 (402)
..+++.++-++++.|.+.+.+++ .+++..|-.+......+ +.+...+...+.......-|++||+.-.++-
T Consensus 232 -------~mS~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif-~i~~~~~~n~~~~iAls~FPf~DPlAii~~l 303 (310)
T PF10319_consen 232 -------TMSKKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIF-GIDLGRWNNYFSVIALSAFPFLDPLAIILCL 303 (310)
T ss_pred -------hhCHhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHH-cCChhHHHHHHHHHHHHHccccCchHhheec
Confidence 11122234578899999998877 77888998877655444 4557788888888888889999999999999
Q ss_pred hHHHHHH
Q psy13963 305 KEFRDAF 311 (402)
Q Consensus 305 ~~fR~~~ 311 (402)
+.||+++
T Consensus 304 P~~R~ri 310 (310)
T PF10319_consen 304 PAFRNRI 310 (310)
T ss_pred HHhhccC
Confidence 9999863
No 27
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.84 E-value=3.8e-07 Score=80.49 Aligned_cols=277 Identities=13% Similarity=0.079 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeeecC-cCccccchhHhH----hHHHHHHHhHHHhhhHHHHHHhcC----cccccccc
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCAAIYTD-RGLRRIGNLFLA----SLAIADLFVAALVMSFALVNDLLG----YWMFGPQF 82 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~-~~~r~~~~~ll~----~lai~dll~~l~~~~~~~~~~~~~----~~~~~~~~ 82 (402)
......=++.+++++.|++..+++.++ ++.-+.....++ ...+.|+..+.+..|........+ -...-+.-
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~ 84 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVP 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccC
Confidence 345566678889999999999987765 332223333333 345667777766666444333222 11222345
Q ss_pred cchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccc--
Q psy13963 83 CDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELY-- 160 (402)
Q Consensus 83 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-- 160 (402)
..++.++..........++..+--+||.++....+ +. ..++.-....+..++++....+|... .....+......
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~-~~~~~r~~~~~~~y~~~~~~~~~~~~-~~pdQ~~~k~~~~~ 161 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RS-LWKKIRIIFIIFNYIIAFLFFIPIYL-SIPDQEEAKQEVLK 161 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cc-cchhhHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHh
Confidence 66777788888888888888899999999986543 11 22222333455556566555555543 222111111000
Q ss_pred -cCCCC---cc-----cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccc
Q psy13963 161 -EGELP---TC-----ALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHI 231 (402)
Q Consensus 161 -~~~~~---~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
.++.+ .+ ..+....+......+...+....+++....+...++++.+..
T Consensus 162 ~~pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~---------------------- 219 (302)
T PF10318_consen 162 KYPCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKT---------------------- 219 (302)
T ss_pred hccCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh----------------------
Confidence 00000 01 001112222333333333333444444444444454443211
Q ss_pred cccCCccccccchhhhhhHHHHHHHH-hhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHH
Q psy13963 232 TTTSSPYHVSDHKAAITVGVIMGTFL-LCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDA 310 (402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~i~~~f~-i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~ 310 (402)
.+++-++.++|..+.+.+.+++.+ +.-.|..........+ ...+...++...+...++...-++..+.++.||+.
T Consensus 220 --~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~--~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~ 295 (302)
T PF10318_consen 220 --MSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFG--YYNQALNNISFIIISLHGIASTIVMILVHKPYRKF 295 (302)
T ss_pred --hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc--ccccccchHHHHHHHhccHHHHHHHhhccHHHHHH
Confidence 111123357888888888887744 4445766555443332 23456677888888999999999999999999999
Q ss_pred HHHHHhh
Q psy13963 311 FKRILIT 317 (402)
Q Consensus 311 ~~~~~~~ 317 (402)
++++++|
T Consensus 296 ~~~~~~~ 302 (302)
T PF10318_consen 296 LLSLFRC 302 (302)
T ss_pred HHHHhcC
Confidence 9999954
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.70 E-value=2.3e-06 Score=72.85 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhc---Ccccccccccchh
Q psy13963 10 SPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL---GYWMFGPQFCDTW 86 (402)
Q Consensus 10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~---~~~~~~~~~C~~~ 86 (402)
..+..++-++...+....|..+++.+...|+.+++.-.++-...+.|.+.++...+........ ++.......--+.
T Consensus 5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~ 84 (273)
T PF10316_consen 5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence 3455667777888999999999999987777444445556667999999988776554443332 1111122222333
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHH
Q psy13963 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAAL 140 (402)
Q Consensus 87 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~ 140 (402)
++...............||+||.+|+..|..|++..++-....+++.+-..++.
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~ 138 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLF 138 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHH
Confidence 444555567788889999999999999999888755554444333333333333
No 29
>KOG4564|consensus
Probab=98.65 E-value=1.7e-06 Score=78.04 Aligned_cols=259 Identities=14% Similarity=0.071 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCc------------cccccccc
Q psy13963 16 FLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGY------------WMFGPQFC 83 (402)
Q Consensus 16 ~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~------------~~~~~~~C 83 (402)
++.+-..++++.=++.+.++..-|++|-..|++=.||.++=++-++..+........... -..+...|
T Consensus 150 lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C 229 (473)
T KOG4564|consen 150 LYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGC 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhH
Confidence 444444444444444455555567889899999999999999888776665553332211 12466799
Q ss_pred chhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCC
Q psy13963 84 DTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGE 163 (402)
Q Consensus 84 ~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (402)
+....+...+..+..+.+.+=+++-|-.+.--.. -.++.......+-|.+++++..+..+......
T Consensus 230 k~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~----ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~---------- 295 (473)
T KOG4564|consen 230 KLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF----SERRYFWLYLLIGWGVPAVFVVVWAIVRLYLE---------- 295 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec----cCccHHHHHHHHhhCCcHHHhhhHHhHheeec----------
Confidence 9999999999999999999999888877664332 23566677788899999998876664431111
Q ss_pred CCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccc
Q psy13963 164 LPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDH 243 (402)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (402)
...|.........+.+.-...++++++-.++.+.|++.+-++-|....... ...+
T Consensus 296 d~~CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~-------------------------~~y~ 350 (473)
T KOG4564|consen 296 DTGCWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASET-------------------------DQYR 350 (473)
T ss_pred cccccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccch-------------------------HHHH
Confidence 114544333211111222333445555566667777766655443221111 1346
Q ss_pred hhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCC--CchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhhhcc
Q psy13963 244 KAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYA 320 (402)
Q Consensus 244 ~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~~~~ 320 (402)
|++|..++++=+|-+-++.+ .+.++. .......+...+..+++++-.++|++.|+|.|.++||.+.+-+.
T Consensus 351 K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~ 422 (473)
T KOG4564|consen 351 KLVKATLVLIPLFGIHYILF-------AFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRL 422 (473)
T ss_pred HHHHHHHHHHHHcCCeeEEE-------EecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcCh
Confidence 77776666555554443322 111221 12233455567888999999999999999999999998855443
No 30
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.58 E-value=7.5e-06 Score=67.31 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=152.1
Q ss_pred HHHHHHHHHhhh--heeeeeecCcCccccchhHhHhHHHHHHHhHHHhh----hHHHHHHhcCcccccccccchhhhhhh
Q psy13963 18 SLLIFLSIAGNI--LVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVM----SFALVNDLLGYWMFGPQFCDTWIAFDV 91 (402)
Q Consensus 18 ~~~~~~gl~~N~--~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~----~~~~~~~~~~~~~~~~~~C~~~~~~~~ 91 (402)
++..+.+.+.+. +++.++....-.+-+...++..|.++-++.+.+.+ |.........+.. .+..-.+..+...
T Consensus 20 v~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~id 98 (305)
T PF04789_consen 20 VLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLID 98 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHH
Confidence 333344444443 33333333333334667889999999888776654 4444333333322 3334556778888
Q ss_pred HhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCc----cccccCCC-Cc
Q psy13963 92 MCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVP----VELYEGEL-PT 166 (402)
Q Consensus 92 ~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~ 166 (402)
++.++-.+.-..+|++|.........-.+.+......+.+..+|++++..-.......-.+.... ....++.. ..
T Consensus 99 f~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~ 178 (305)
T PF04789_consen 99 FCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSV 178 (305)
T ss_pred HHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCee
Confidence 99999999999999999987765444445566778888899999999887643332111111111 01111111 11
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhh
Q psy13963 167 CALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAA 246 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (402)
-....+.....+-..+.+.+|+++.+ .|+.+..++-..++... .+.|.+..
T Consensus 179 v~~~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~MKkssL----------------------------nK~Ei~IL 229 (305)
T PF04789_consen 179 VDISPPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIKMKKSSL----------------------------NKNEITIL 229 (305)
T ss_pred EeeCCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhhccC----------------------------CchhHHHH
Confidence 12233455667778888889887764 45555444433222111 22577888
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhcC-CCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHH
Q psy13963 247 ITVGVIMGTFLLCWVPFFCVNIIAAFCKT-CIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRI 314 (402)
Q Consensus 247 ~~~~~i~~~f~i~~~P~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~ 314 (402)
|+.+.+.++| ..+..+..+-....-. ...-....+...+-.+.++..|-.+...++|.||-+-.-
T Consensus 230 KQAifIFvlF---Q~ss~VFl~~qt~~~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~k 295 (305)
T PF04789_consen 230 KQAIFIFVLF---QASSCVFLLCQTFKFNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSSK 295 (305)
T ss_pred HHHHHHHHHH---HHHHHHHHhheeeeecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHhh
Confidence 8877655444 4444333332222111 111233445556677778889999999999988876553
No 31
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.53 E-value=3.1e-08 Score=84.44 Aligned_cols=131 Identities=14% Similarity=0.072 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhhH
Q psy13963 13 PGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVM 92 (402)
Q Consensus 13 ~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 92 (402)
..++..+-+.+++++-.+.+..+...|++|+..+....||++++++..+..+.. ......+....++..|...+.+.++
T Consensus 3 l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy 81 (242)
T PF00002_consen 3 LSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHY 81 (242)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHH
Confidence 345566666777777777777666668888878888899999999887654432 1111111111123359999999999
Q ss_pred hhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhh
Q psy13963 93 CSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISL 148 (402)
Q Consensus 93 ~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 148 (402)
+..++..++.+.+++-|..+..+.. ..+++.....+..|.+++++.......
T Consensus 82 ~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 82 FFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 9999999999999999999987632 234555667788899998887655543
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.26 E-value=0.00021 Score=63.32 Aligned_cols=268 Identities=14% Similarity=0.215 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeeecCcCccccch-hHhHhHHHHHHHhHHHhhhHHH---HHHhc--C---cccccccc
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGN-LFLASLAIADLFVAALVMSFAL---VNDLL--G---YWMFGPQF 82 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~-~ll~~lai~dll~~l~~~~~~~---~~~~~--~---~~~~~~~~ 82 (402)
+..++..++.++++++....+-.+.++.-..+.+. +++.+|..+++=- +......+ ...+. + +..+.+..
T Consensus 22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq-~~y~~~~~~~lyrsf~~~~dpC~i~f~~~e 100 (328)
T PF02117_consen 22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQ-ISYAIIQIWSLYRSFFYSDDPCSILFTSSE 100 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeeeEeecCc
Confidence 34456667778888888888877777666676664 4455665555432 22221111 11111 1 24556778
Q ss_pred cchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccC
Q psy13963 83 CDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEG 162 (402)
Q Consensus 83 C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (402)
|.....+..++.....+..+++.+||.+|-..|..|++ .+......+.+.+.+.++... .+..++.+ ...
T Consensus 101 C~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~-~~~~~g~~l~i~~li~s~~~~---~~i~~~~p------~~g 170 (328)
T PF02117_consen 101 CFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK-KSYIIGIILSILVLILSFITG---FIIYWDDP------LDG 170 (328)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh-hhHHHHHHHHHHHHHHHHHHe---eEEEeCCC------Ccc
Confidence 99999999999999999999999999999988865433 122222222222222222221 11122221 122
Q ss_pred CCCcccccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccc
Q psy13963 163 ELPTCALDLTPTYAVVSSCISFYVPC-IVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVS 241 (402)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (402)
..+.|..................+.+ ++-+++.+.+++.-+|..++.+- + .+.+=.+++
T Consensus 171 yv~~C~~~p~~s~~~~~~~~~~~~~l~i~~~i~s~~l~~~nkk~e~~~~f-~-------------------v~~Ry~~~E 230 (328)
T PF02117_consen 171 YVPSCFYPPKNSVNRFNIFLIVCFVLTIFNLIVSIFLMYYNKKKEKKTRF-D-------------------VNSRYQKRE 230 (328)
T ss_pred ccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-c-------------------HHHHHHHHH
Confidence 33456554443333222222111111 22233444444444443331100 0 000011224
Q ss_pred cchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHH-HHHHHHhh--hccccchhHHhhcChHHHHH
Q psy13963 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWF-KILTWLGY--SNSAFNPIIYSIYNKEFRDA 310 (402)
Q Consensus 242 ~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~-~~~~~l~~--~~~~~np~iy~~~~~~fR~~ 310 (402)
....++.+..+.+.-+++..-|.+...+........+...+ .+..++.. ..++.=|++-.+.-+..|+.
T Consensus 231 ni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~lP~li~~~~~~~~~~ 302 (328)
T PF02117_consen 231 NINSTKAICIISISQFICMFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAALSLPLLIIYRIRRIRRQ 302 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888777777776554444333444444433 33333322 23445566666555554443
No 33
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.97 E-value=0.0018 Score=58.66 Aligned_cols=270 Identities=16% Similarity=0.135 Sum_probs=128.6
Q ss_pred CChhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHH---HhHHHhhhHHHHHHhcC---------ccc
Q psy13963 10 SPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADL---FVAALVMSFALVNDLLG---------YWM 77 (402)
Q Consensus 10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dl---l~~l~~~~~~~~~~~~~---------~~~ 77 (402)
+....++-.++.+++..-....+.++.+.+..|...+.+...+...-+ +.-+...|........+ -|.
T Consensus 26 ~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t 105 (365)
T PF03125_consen 26 YIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWT 105 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhc
Confidence 445555556666666666666677777878888766666554443332 22222333332211100 011
Q ss_pred cc------------ccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHh
Q psy13963 78 FG------------PQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVP 145 (402)
Q Consensus 78 ~~------------~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~ 145 (402)
.+ ...-.+.+++...........+.++++||.+|-..--.|.+.....-...++++.-++++..+...
T Consensus 106 ~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~~~s~~~ 185 (365)
T PF03125_consen 106 DDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSIIFSYFV 185 (365)
T ss_pred cCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 11 111223344555555666788999999999999988888863222222233333333444333211
Q ss_pred HhhcCCCCCCccccccCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCC
Q psy13963 146 ISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRP 225 (402)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (402)
... ........+..+++.++..+.+..+.+.=++..++.+...+. .. . -+-
T Consensus 186 ~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~-~~-~--YSL 236 (365)
T PF03125_consen 186 IFN-------------------------IIPFIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRK-IS-K--YSL 236 (365)
T ss_pred HHH-------------------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCC-Cc-e--ech
Confidence 110 011122233333333333344444444333333333322211 00 0 000
Q ss_pred CCCccccccCCccccccchhhhhh---HHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhh
Q psy13963 226 SPALHITTTSSPYHVSDHKAAITV---GVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSI 302 (402)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~ 302 (402)
+. +=+-++..|..+++ ++..+.+.+.-....+...+.. ..........+......+++.+-|.+-..
T Consensus 237 s~--------RFQi~ENir~l~l~~~~vi~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~i~l~~~~i~~~~i~ 306 (365)
T PF03125_consen 237 SQ--------RFQIKENIRSLKLLKRVVIVIAFFIILCLIILILLSFDL--SPSYRTILNHIFENCIFLNPIFICPVIIF 306 (365)
T ss_pred hh--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ChhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 00 00011234444444 3333333332222222111111 11122345566777888889998888899
Q ss_pred cChHHHHHHHHHHhhh
Q psy13963 303 YNKEFRDAFKRILITN 318 (402)
Q Consensus 303 ~~~~fR~~~~~~~~~~ 318 (402)
..++.|+++++.+...
T Consensus 307 s~~~wrk~f~~~~~~~ 322 (365)
T PF03125_consen 307 SVPSWRKEFKRSFPKI 322 (365)
T ss_pred cCHHHHHHHHHhhhhh
Confidence 9999999999987543
No 34
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.85 E-value=0.0024 Score=56.12 Aligned_cols=154 Identities=8% Similarity=0.069 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHHHHhhhheeeeeecCcCccccchhHhHhHHHHHHHhHHHhhhHHHHH--Hhc-C----------cccc
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVN--DLL-G----------YWMF 78 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~r~~~~~ll~~lai~dll~~l~~~~~~~~~--~~~-~----------~~~~ 78 (402)
.......+...+..+.+.+.+..+..+++.-+-+..-++-++++-++.++..+...+.. ... + ....
T Consensus 10 ~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~ 89 (328)
T PF01534_consen 10 FARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGL 89 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCC
Confidence 34455566667777777777777766655444456666667877777766555444431 000 0 0123
Q ss_pred cccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccc
Q psy13963 79 GPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVE 158 (402)
Q Consensus 79 ~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
++..|.+...+.+++.+++...-+.+++.-|++....-.... -.+.......+.|.++++.++..+.......
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg----- 162 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDG----- 162 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhccccc-----
Confidence 456899999999999999999999999999999876444332 3455666789999999999887775544332
Q ss_pred cccCCCCcccccCCcc
Q psy13963 159 LYEGELPTCALDLTPT 174 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (402)
++-...|.....+.
T Consensus 163 --D~ltGiC~Vg~~~~ 176 (328)
T PF01534_consen 163 --DELTGICFVGNQNP 176 (328)
T ss_pred --ccccceeEEeCCCH
Confidence 33445676655544
No 35
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.64 E-value=0.0068 Score=52.25 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=102.8
Q ss_pred cchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCc--Ccc
Q psy13963 44 IGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRY--SRW 121 (402)
Q Consensus 44 ~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y--~~~ 121 (402)
++-.+++-+.++++...+-.+... - +....-+.+|.+...+.......-....++|+-.-|. |..+... .+.
T Consensus 25 ~~~~li~Wl~l~nl~~~INaiIW~----~-n~~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~-I~s~r~~~~~~~ 98 (283)
T PF02076_consen 25 GTCSLIFWLFLSNLIYFINAIIWR----D-NDINWWPVWCDISTKLIIGSSVGIPAASLCIMRRLYR-IASARAVSLSRS 98 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcC----C-CCCccCceeeeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCCCChH
Confidence 556788888888887654322111 1 1112223899999888877777765555555554442 4333321 222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCCcccccCCcchHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13963 122 VTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSC-ISFYVPCIVMLGIYLRLYC 200 (402)
Q Consensus 122 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~i~~ 200 (402)
.++|+...=..+++.++++.....++....... --+.-.|.......+..+... +.-.+-.++..+.-+..++
T Consensus 99 ~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~------I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~ 172 (283)
T PF02076_consen 99 EKRRRIIIDLLICFGIPILQMALHYIVQGHRFD------IVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLR 172 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccee------EecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666667888888888887766655444332 233445655555444333221 1111111112222223344
Q ss_pred HHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHHHH
Q psy13963 201 YAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIA 270 (402)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~ 270 (402)
...|+++..++.-+..++.- ...|.. .+..+.++.+++.+|..+..++.
T Consensus 173 ~f~~rr~~f~~~l~~s~s~l--------------------~~~Rf~-RL~~la~~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 173 RFIRRRKQFRDILSSSNSGL--------------------NTSRFF-RLLALALVIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHHHHHHHHHHHhcCCCcc--------------------cHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443322221111 123343 37777888889999999988883
No 36
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.61 E-value=0.0021 Score=55.90 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=114.2
Q ss_pred ccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCcccc
Q psy13963 80 PQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVEL 159 (402)
Q Consensus 80 ~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 159 (402)
+..=++..++...+.+.+.+..++.++-|.+.+..|.++++ ..++-.......+.+++++.+.|.+...+.-...+...
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~-i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKK-ICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhH-HHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 34456677788889999999999999999999999987654 45555566777788888887765543222110000000
Q ss_pred ccCCC-CcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCcc
Q psy13963 160 YEGEL-PTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPY 238 (402)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
..... -....++.+........+....-++.++++++.+++++|+.+.+.... .+++..
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~--------------------~~s~~~ 238 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQ--------------------RRSKQS 238 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch--------------------hhcccc
Confidence 00000 011122333333444556666677788889999999999876311110 112222
Q ss_pred ccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHH
Q psy13963 239 HVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDA 310 (402)
Q Consensus 239 ~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~ 310 (402)
+|.|+.++.+++++++-++.-- +..+...... ........+=....=+..++-|.++.+.++-||++
T Consensus 239 ~KAE~SLT~Tmi~mliP~i~n~----i~~i~~~~~~-~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkkk 305 (307)
T PF10322_consen 239 RKAERSLTLTMISMLIPYITNG----IISISFLFFP-SYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKKK 305 (307)
T ss_pred hhhheeHHHHHHHHHHHHHHHH----HHHHHHhcCc-hHHHHHHHHhhhhhccceeEEEEEeeecChhhcCC
Confidence 4467777777776665443322 2222222111 11111111222333345566677888888877753
No 37
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.87 E-value=0.0014 Score=49.87 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=72.3
Q ss_pred hhHhHhHHHHHHHhHHHhhhHHHHHHhcCccc---ccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCccc
Q psy13963 46 NLFLASLAIADLFVAALVMSFALVNDLLGYWM---FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWV 122 (402)
Q Consensus 46 ~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~ 122 (402)
-.|+.+|++++++..+............++.. +....-+....+..++.....+...+|+++|-..|.+|.+...++
T Consensus 4 ~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~F 83 (153)
T PF03383_consen 4 FVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWF 83 (153)
T ss_pred EEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccc
Confidence 45777888888887665433333222222111 111223334557788888999999999999999999999977789
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhHh
Q psy13963 123 TRKVAVGTIACIWLLAALISFVPIS 147 (402)
Q Consensus 123 ~~~~~~~~~~~~w~~~~~~~~~~~~ 147 (402)
+.++....+.++.++.+..-+.|++
T Consensus 84 s~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 84 SDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcC
Confidence 9999999998888888887777764
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.75 E-value=0.0024 Score=42.49 Aligned_cols=67 Identities=9% Similarity=0.227 Sum_probs=50.9
Q ss_pred ccchhhhhhHHHHHHHHhhhh-hHHHHHHHHHhh-cCCCchhHHHHHHHHhhhccccchhHHhhcChHH
Q psy13963 241 SDHKAAITVGVIMGTFLLCWV-PFFCVNIIAAFC-KTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEF 307 (402)
Q Consensus 241 ~~~~~~~~~~~i~~~f~i~~~-P~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~f 307 (402)
+-+|..+.+++--++|+++|+ |...-.+-.... +...+.++..++..+..+++++|-++|.+.-+..
T Consensus 6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 557888999999999999999 765544443322 2334457788888899999999999999876543
No 39
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.36 E-value=0.3 Score=40.20 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=39.3
Q ss_pred ccccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCc
Q psy13963 76 WMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSR 120 (402)
Q Consensus 76 ~~~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~ 120 (402)
...+...++.......+..+.+++.-..+++||++|....-+|.+
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 344667888888899999999999999999999999999878876
No 40
>KOG4289|consensus
Probab=95.62 E-value=0.077 Score=54.21 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=95.4
Q ss_pred cccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccc
Q psy13963 79 GPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVE 158 (402)
Q Consensus 79 ~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
+...|.+...+..+...+++.++.+-+++-|-+..--. ...-.....++-|.++.++....+.
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v------~tg~mrfy~~vGwgvPa~itglavg----------- 2284 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENV------DTGPMRFYYLVGWGVPALITGLAVG----------- 2284 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------CCCceeEEEEeecchhhheeeeeec-----------
Confidence 67899999999999999999999988888887776522 1111122244557776655432221
Q ss_pred cccCCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhcccCCCCCCCCCCCCCCCccccccCC
Q psy13963 159 LYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKH--VKSIRAVTRPLPSSSSLPRPSPALHITTTSS 236 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
-.++|+...+....|. +..|+.+.++++...+...-+. .++.+...
T Consensus 2285 ----ldDfCwlS~h~~LiWs-----fagPigl~i~ms~~~~~lsa~vSc~~k~~~f~----------------------- 2332 (2531)
T KOG4289|consen 2285 ----LDDFCWLSPHDTLIWS-----FAGPIGLVILMSFYAAALSARVSCHKKYQVFV----------------------- 2332 (2531)
T ss_pred ----ccceeecccchheeee-----ecccceeeehHHHHHHHHHHHHhhhhhheeee-----------------------
Confidence 1145665555443332 2223222222222111111110 00000000
Q ss_pred ccccccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHHH
Q psy13963 237 PYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~ 312 (402)
+|...+..+..++++++.-..|+-..+ . ....+-.+.++...+..+...+--++|+..+.+.|++++
T Consensus 2333 --kK~~v~~lq~~fl~llllsatwl~~ll-----~--vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2333 --KKGNVSVLQHSFLLLLLLSATWLLGLL-----A--VNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred --eccchhhhHHHHHHHHHHHHHHHHHHH-----h--cCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 012244555556655555555554322 1 122334456666667777777777888999999999998
No 41
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.76 E-value=0.47 Score=38.02 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhhheeeeeecCcCc-cc-cchhHhHhHHHHHHHhHHHhhhHHHHHH-----hc--Ccccccccccc
Q psy13963 14 GVFLSLLIFLSIAGNILVCAAIYTDRGL-RR-IGNLFLASLAIADLFVAALVMSFALVND-----LL--GYWMFGPQFCD 84 (402)
Q Consensus 14 ~~~~~~~~~~gl~~N~~vl~~i~~~~~~-r~-~~~~ll~~lai~dll~~l~~~~~~~~~~-----~~--~~~~~~~~~C~ 84 (402)
...-.++-..+.+.+.+....+.++|+. ++ ...+.. +-+..-++.+|..+... .. .+-.++-..|.
T Consensus 44 i~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCS 118 (226)
T PF06681_consen 44 ITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCS 118 (226)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence 3445566677777787766666666553 22 112211 11222233344333221 11 22334566898
Q ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCC
Q psy13963 85 TWIAFDVMCSTSSILNLCAISLDRYIHIKDPLR 117 (402)
Q Consensus 85 ~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~ 117 (402)
+..-.............+++|++||+.|++-.+
T Consensus 119 flk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 119 FLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 888777777766667777899999999987554
No 42
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=90.91 E-value=3 Score=36.78 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHH
Q psy13963 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFC 265 (402)
Q Consensus 186 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i 265 (402)
...+-.++.-+.....+..-.|..++++.. .+..+....++.....-.++.|++.++.+.+
T Consensus 188 ~~~lPf~i~l~s~~lli~SL~rH~r~M~~n-------------------~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 188 GSFLPFLIFLVSSILLIFSLWRHMRRMQKN-------------------ATGFRDPSTEAHIRAIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhCC-------------------CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666667777777777765542 2233556677777788888889998888877
Q ss_pred HHHH
Q psy13963 266 VNII 269 (402)
Q Consensus 266 ~~~~ 269 (402)
..++
T Consensus 249 ~~~~ 252 (303)
T PF05296_consen 249 SLIL 252 (303)
T ss_pred HHHH
Confidence 6554
No 43
>KOG1056|consensus
Probab=80.74 E-value=52 Score=33.50 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHHHHHhhhheeeeeecCcCc-------cccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccc
Q psy13963 10 SPPPGVFLSLLIFLSIAGNILVCAAIYTDRGL-------RRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82 (402)
Q Consensus 10 ~~~~~~~~~~~~~~gl~~N~~vl~~i~~~~~~-------r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~ 82 (402)
+...++..+++.++|++.-+.++.++.+.... |...++++.++.++=.... .+ .-......
T Consensus 558 ~~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l~y~~tf----------~~--i~eP~~~~ 625 (878)
T KOG1056|consen 558 RSPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLCYASTF----------FF--IAEPTDIS 625 (878)
T ss_pred cccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHHHHhhhh----------ee--EecCCCce
Confidence 44566888899999999999888888776542 2334555555543322110 00 11235667
Q ss_pred cchhhhhhhHhhh--HHHHHHHHHHHHHHhHh
Q psy13963 83 CDTWIAFDVMCST--SSILNLCAISLDRYIHI 112 (402)
Q Consensus 83 C~~~~~~~~~~~~--~s~~~~~~iaidRy~ai 112 (402)
|.+...+.-.... .+.+.+-..-+-|-++-
T Consensus 626 C~lrr~~~gl~f~i~ysalltKtnrI~rif~~ 657 (878)
T KOG1056|consen 626 CRLRRTFLGLGFTICYSALLTKTNRIARIFEF 657 (878)
T ss_pred eeEeeeecchhHHHHHHHHHHHHHHHHHHHhc
Confidence 8777654443333 33333334444454443
No 44
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=75.28 E-value=9.6 Score=32.12 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=23.5
Q ss_pred ccccccchhhhhhhHhhhHHHHHHHHHHHHHHhHhhCCCC
Q psy13963 78 FGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLR 117 (402)
Q Consensus 78 ~~~~~C~~~~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~ 117 (402)
.++..|....++...+.......+.+=+..=|.....+..
T Consensus 51 ~s~~~C~~r~~~~~l~f~l~~~~ll~K~~ri~~if~~~~~ 90 (238)
T PF00003_consen 51 PSDILCTLRRWLFSLGFTLIFSALLAKTWRIYRIFRNPSR 90 (238)
T ss_pred cCCcEEEEeeeeeeeehHhhhhHHHHhhhheeeeeccCCC
Confidence 3577899888887766666655555444433333333433
No 45
>PHA03235 DNA packaging protein UL33; Provisional
Probab=75.15 E-value=71 Score=29.67 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhhhccccchhHHhhcChHHHHHHHHHHhhhcc
Q psy13963 279 GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYA 320 (402)
Q Consensus 279 ~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~~~~~~~~~~ 320 (402)
.....+...-..+|+.+-.++.--+.+.+|+.++..+.++++
T Consensus 289 ~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~l~~~~~ 330 (409)
T PHA03235 289 TLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGELFSRRA 330 (409)
T ss_pred HHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhhhhhhHH
Confidence 345556666777888888888888889999988876555533
No 46
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=69.86 E-value=72 Score=27.44 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=58.2
Q ss_pred hhhhhHhhhHHHHHHHHHHHHHHhHhhCCCCcCc-ccchhhHHHHHHHHHHHHHHHHHHhHhhcCCCCCCccccccCCCC
Q psy13963 87 IAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSR-WVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELP 165 (402)
Q Consensus 87 ~~~~~~~~~~s~~~~~~iaidRy~ai~~p~~y~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (402)
.+.......+--+.+.++|++|++--..|..-+. ..+.+.....+...+.+.++-.+............ ...
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~-------~~~ 158 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNN-------EST 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------ccc
Confidence 3344455556666789999999999999973222 23455555555555555555433222221111100 000
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13963 166 TCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKS 208 (402)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~ 208 (402)
.. .+............ .-+-+++...+|+-|+...||.++-
T Consensus 159 ~~-~~~~~~~~~~~~~~-~~~ll~~S~lLYIPI~isirK~~~l 199 (267)
T PF10325_consen 159 EE-IETFSYIYVIFYII-LNILLFLSALLYIPIFISIRKLSHL 199 (267)
T ss_pred hh-hhHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 11111111112222 2244666778999999988887653
No 47
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=68.79 E-value=61 Score=28.11 Aligned_cols=25 Identities=12% Similarity=0.055 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13963 183 SFYVPCIVMLGIYLRLYCYAQKHVK 207 (402)
Q Consensus 183 ~~~~p~~~~~~~~~~i~~~~~~~~~ 207 (402)
..+..++.+.++...|+.++++..+
T Consensus 8 a~~~~~~~~~is~~~i~~hl~~y~~ 32 (274)
T PF03619_consen 8 AGIFALLTILISLFLIYQHLRNYSK 32 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334445555556666666665443
No 48
>KOG4220|consensus
Probab=67.70 E-value=52 Score=30.17 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=42.3
Q ss_pred ccchhhhhhHHHHHHHHhhhhhHHHHHHHHHhhcCC-----------CchhHHH--HHHHHhhhccccchhHHhhcChHH
Q psy13963 241 SDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTC-----------IPGYWFK--ILTWLGYSNSAFNPIIYSIYNKEF 307 (402)
Q Consensus 241 ~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~-----------~~~~~~~--~~~~l~~~~~~~np~iy~~~~~~f 307 (402)
..+++..|+.+--++-++.|.|..+..-+ +.+.. ..+.... .+....++.-.+=-++|.-..++-
T Consensus 143 TtkrA~~MI~~AW~iSfiLWaPaIl~Wqy--ivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret 220 (503)
T KOG4220|consen 143 TTKRAGLMIGAAWVLSFVLWAPAILFWQY--IVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRET 220 (503)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHh--heeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677778888888889999997665332 22210 1111111 222233444445556777777788
Q ss_pred HHHHHHHH
Q psy13963 308 RDAFKRIL 315 (402)
Q Consensus 308 R~~~~~~~ 315 (402)
|++.+++=
T Consensus 221 ~kR~k~~~ 228 (503)
T KOG4220|consen 221 RKRQKELA 228 (503)
T ss_pred HHHHHhhh
Confidence 88777753
No 49
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=50.80 E-value=80 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy13963 126 VAVGTIACIWLLAALISF 143 (402)
Q Consensus 126 ~~~~~~~~~w~~~~~~~~ 143 (402)
++.+..+.+-++|++.+.
T Consensus 3 ~~lisq~~il~fa~Vla~ 20 (233)
T PF09973_consen 3 RILISQVSILLFAAVLAF 20 (233)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 344444445555555543
No 50
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=47.23 E-value=2e+02 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHhhhhhHHHHHHHHHh
Q psy13963 245 AAITVGVIMGTFLLCWVPFFCVNIIAAF 272 (402)
Q Consensus 245 ~~~~~~~i~~~f~i~~~P~~i~~~~~~~ 272 (402)
..+-+..++.+-.+|.+-..++.++..+
T Consensus 204 kl~~V~~vt~ic~~cF~ir~i~~~~~~~ 231 (281)
T PF06454_consen 204 KLRKVGFVTIICSVCFLIRCIMVLFSAF 231 (281)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666666667777777776665554
No 51
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=45.15 E-value=21 Score=22.11 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHhhhheee
Q psy13963 12 PPGVFLSLLIFLSIAGNILVCA 33 (402)
Q Consensus 12 ~~~~~~~~~~~~gl~~N~~vl~ 33 (402)
+..++.+++.+--++||+.++=
T Consensus 3 ~~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 3 WNPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred chhhHHHHHHHHHHHhHHHHHH
Confidence 3445556666666788977765
No 52
>PF13853 7tm_4: Olfactory receptor
Probab=41.75 E-value=0.44 Score=36.69 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCC-CccccccCCCC----cccccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13963 129 GTIACIWLLAALISFVPISLGLHRPP-VPVELYEGELP----TCALDL-TPTYAVVSSCISFYVPCIVMLGIYLRLYCYA 202 (402)
Q Consensus 129 ~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~ 202 (402)
.+.++.|+.+++..++.......... +..+.+.++.+ .|.... .+.+.........+.|+.+++++|+.|+..+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 35667788888777666644322211 11111122211 233322 2333444555667789999999999999877
Q ss_pred HhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHHHHHhhhhhHHHHHH
Q psy13963 203 QKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNI 268 (402)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~ 268 (402)
.|..... .++|+..+......+..+.+.|....++
T Consensus 85 lki~S~~-------------------------------~r~KAfsTC~sHL~vv~lfy~~~~~~y~ 119 (144)
T PF13853_consen 85 LKIPSAE-------------------------------GRSKAFSTCSSHLTVVSLFYGTVIFMYL 119 (144)
T ss_pred hcccccc-------------------------------cccccccccccCceEEEEeeeeeEEEEe
Confidence 7653221 2356666766666666666666544433
No 53
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.55 E-value=2.8e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=20.0
Q ss_pred ccchhhhhhHHHHHHHHhhhhhHHHHHHH
Q psy13963 241 SDHKAAITVGVIMGTFLLCWVPFFCVNII 269 (402)
Q Consensus 241 ~~~~~~~~~~~i~~~f~i~~~P~~i~~~~ 269 (402)
-+++.-+......+.+.+...+..+...+
T Consensus 91 ~~~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 91 YYRKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777666655
No 54
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=31.68 E-value=71 Score=17.53 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy13963 175 YAVVSSCISFYVPCIVMLGIYLRL 198 (402)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~i 198 (402)
...+...++..+|..++++.|++.
T Consensus 6 lgfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 6 LGFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec
Confidence 344556677788888888888754
No 55
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=31.01 E-value=1.3e+02 Score=26.33 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhhhheeeeeecCcC-ccccchhHhHhHHHHHHHhHHHhhhHHHHHHhcCcccccccc
Q psy13963 13 PGVFLSLLIFLSIAGNILVCAAIYTDRG-LRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQF 82 (402)
Q Consensus 13 ~~~~~~~~~~~gl~~N~~vl~~i~~~~~-~r~~~~~ll~~lai~dll~~l~~~~~~~~~~~~~~~~~~~~~ 82 (402)
....++++.++|++.|.+..+.+.+.+. -.+....|+ -+++|.+..+..+...+...+.+ |..-+..
T Consensus 123 ~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~L--Hvl~D~Lgsv~vIia~i~i~~~~-w~~~Dpi 190 (296)
T COG1230 123 HYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYL--HVLGDALGSVGVIIAAIVIRFTG-WSWLDPI 190 (296)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC-CCccchH
Confidence 3355677889999999999997766511 122222333 45689998877666655555444 4444433
No 56
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=30.85 E-value=80 Score=17.07 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13963 176 AVVSSCISFYVPCIVMLGIYLRL 198 (402)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~i 198 (402)
..+...++..+|..+.++.|++.
T Consensus 7 ~fiAt~Lfi~iPt~FLiilYvqT 29 (33)
T TIGR03038 7 GFIATLLFILVPTVFLLILYIQT 29 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 34556677788888888888754
No 57
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=30.27 E-value=2.7e+02 Score=28.74 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccchhhhhhHHHHH
Q psy13963 175 YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMG 254 (402)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 254 (402)
|.++..++...+.++++++.++-+.....-.+++.....+. ..+..-..-.++.+.+
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~-----------------------c~~~tGg~~Lm~gv~~ 468 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRG-----------------------CSSNTGGNFLMAGVGL 468 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccC-----------------------CCCCccHHHHHHHHHH
Confidence 44555555555555566666666666665432221111110 1123445556777788
Q ss_pred HHHhhhhhHHHHHHHHHhh
Q psy13963 255 TFLLCWVPFFCVNIIAAFC 273 (402)
Q Consensus 255 ~f~i~~~P~~i~~~~~~~~ 273 (402)
+|+++|+-..+..++...+
T Consensus 469 ~Flf~~~l~l~~~~~Fl~G 487 (806)
T PF05478_consen 469 SFLFSWFLMLLVLFYFLVG 487 (806)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999998877776665554
No 58
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.95 E-value=67 Score=22.69 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC
Q psy13963 184 FYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLP 217 (402)
Q Consensus 184 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 217 (402)
++..++++.++|..+++--+++.+..++.-....
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL~ 45 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQELLNSLK 45 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcc
Confidence 3444555667888888877777776665554443
No 59
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=29.86 E-value=4.4e+02 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13963 175 YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKS 208 (402)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~ 208 (402)
+........-++|++.++..-+++.|..+.++++
T Consensus 301 ~~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~ 334 (374)
T PF01528_consen 301 LHTGIAINLAVIAIICLIMMVVRLVRAFLYHRRR 334 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444455666777888888888888888887664
No 60
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=29.26 E-value=2.7e+02 Score=21.54 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhcCCCchhHHHHHHHHhhhccccchhHHhhcChHHHHHH
Q psy13963 247 ITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAF 311 (402)
Q Consensus 247 ~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~np~iy~~~~~~fR~~~ 311 (402)
..+..+..+..+.|....+........... .....-++.+-+.+.++...+-++..||.=
T Consensus 81 ~~L~~~nill~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~lp~vaii~~~LA~r~I~kDE 140 (149)
T PF14126_consen 81 IRLCVLNILLNVGLYGLFAYFSLNLSGELG-----ATFSFGIGFFLPLVAIIFLWLANRAIKKDE 140 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444555555666666655555432221 222223334446666667777777777643
No 61
>PRK13664 hypothetical protein; Provisional
Probab=28.77 E-value=61 Score=19.99 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhhh
Q psy13963 16 FLSLLIFLSIAGNIL 30 (402)
Q Consensus 16 ~~~~~~~~gl~~N~~ 30 (402)
+++++.++|++.|.+
T Consensus 10 ilill~lvG~i~N~i 24 (62)
T PRK13664 10 ILVLVFLVGVLLNVI 24 (62)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346677788888864
No 62
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=27.09 E-value=1.3e+02 Score=20.37 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCCC
Q psy13963 189 IVMLGIYLRLYCYAQKHVKSIRAVTRPL 216 (402)
Q Consensus 189 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 216 (402)
+++.++|..+.+--+|+.++.+......
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~m~~~L 37 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQEMLASL 37 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTGGG--
T ss_pred HHHHHHhhheecHHHHHHHHHHHHHHcC
Confidence 4555667777776666666655544443
No 63
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=26.60 E-value=1.7e+02 Score=18.39 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=20.5
Q ss_pred ccchhhhhhHHHHHHHHhhhhhHHHHHHHHH
Q psy13963 241 SDHKAAITVGVIMGTFLLCWVPFFCVNIIAA 271 (402)
Q Consensus 241 ~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 271 (402)
+..+.++.++++.+++++.-+-|.....+..
T Consensus 5 ~~~~mtriVLLISfiIlfgRl~Y~~I~a~~h 35 (59)
T PF11119_consen 5 KNSRMTRIVLLISFIILFGRLIYSAIGAWVH 35 (59)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4567788888887777766566655554443
No 64
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=25.91 E-value=3.4e+02 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13963 185 YVPCIVMLGIYLRLYCYAQ 203 (402)
Q Consensus 185 ~~p~~~~~~~~~~i~~~~~ 203 (402)
++|+++++++....++.=.
T Consensus 2 ~~P~~li~~~s~~~f~~~~ 20 (237)
T PF02932_consen 2 IIPCILIVVLSWLSFWLPP 20 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhheEeCc
Confidence 5788888777777776544
No 65
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=25.57 E-value=1.2e+02 Score=16.20 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13963 176 AVVSSCISFYVPCIVMLGIYLRL 198 (402)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~i 198 (402)
..+...++..+|..+.++.|++.
T Consensus 7 ~fiAtaLfi~iPt~FLiilyvqT 29 (31)
T PF05151_consen 7 AFIATALFILIPTAFLIILYVQT 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhheEeee
Confidence 34455677778888888888764
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.81 E-value=26 Score=25.95 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=9.5
Q ss_pred HHHHHhhhheeeeeecCcC
Q psy13963 22 FLSIAGNILVCAAIYTDRG 40 (402)
Q Consensus 22 ~~gl~~N~~vl~~i~~~~~ 40 (402)
+.|++|=+++++.++++++
T Consensus 74 ~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566665554444444333
No 67
>CHL00080 psbM photosystem II protein M
Probab=24.79 E-value=1.1e+02 Score=16.70 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13963 176 AVVSSCISFYVPCIVMLGIYLRL 198 (402)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~i 198 (402)
..+...++..+|..++++.|++.
T Consensus 7 gfiAt~LFi~iPt~FLlilyvkT 29 (34)
T CHL00080 7 AFIATALFILVPTAFLLIIYVKT 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHhheee
Confidence 34455667778888888887654
No 68
>PF15383 TMEM237: Transmembrane protein 237
Probab=23.80 E-value=4.7e+02 Score=22.45 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHhhCCCCcCcccchhhHHHHHHHHHHHHHHHHHHhH
Q psy13963 99 LNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPI 146 (402)
Q Consensus 99 ~~~~~iaidRy~ai~~p~~y~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 146 (402)
..-++-++|||--=.......+...+.....+.+++|++++++++.-.
T Consensus 150 ~is~VSafDr~dl~~~~~~~~r~~~~~~~~~lai~ly~~~lvlsls~~ 197 (253)
T PF15383_consen 150 AISTVSAFDRYDLAHFSMAHLRGFLKLDPGALAILLYFIALVLSLSCQ 197 (253)
T ss_pred HHHHHhhhhhHHhhcccHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 333445678884433333322223444445567778888888876544
No 69
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.74 E-value=1.8e+02 Score=18.54 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy13963 182 ISFYVPCIVMLGIYLRLYCYAQKHVKSIR 210 (402)
Q Consensus 182 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~~ 210 (402)
++.++..++....+.+.-+..++.+++.+
T Consensus 30 ~G~llg~l~~~~~~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 30 LGALLGWLLSLPSRLRLRRRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 70
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.66 E-value=2.4e+02 Score=23.48 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13963 174 TYAVVSSCISFYVPCIVMLGIYLRLYCYAQKH 205 (402)
Q Consensus 174 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~ 205 (402)
.+..+...+.|.+|.++-+...+.++-.+|++
T Consensus 196 ~~~~~lwyi~Y~vPY~~~ig~~i~l~~~~~~~ 227 (230)
T PF03904_consen 196 SFWTYLWYIAYLVPYIFAIGLFIYLYEWIRAK 227 (230)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35555667888889888666666666555543
No 71
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=23.17 E-value=1.2e+02 Score=16.66 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhh
Q psy13963 14 GVFLSLLIFLSIAGN 28 (402)
Q Consensus 14 ~~~~~~~~~~gl~~N 28 (402)
.++++.++++|.+.|
T Consensus 12 V~ffv~LFifGflsn 26 (36)
T PF02532_consen 12 VIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccccCC
Confidence 344555667777766
No 72
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.69 E-value=45 Score=20.99 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=9.3
Q ss_pred chhhhhhHHHHHHHHhhhh
Q psy13963 243 HKAAITVGVIMGTFLLCWV 261 (402)
Q Consensus 243 ~~~~~~~~~i~~~f~i~~~ 261 (402)
++...++.++++++++.|+
T Consensus 36 ~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 73
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.13 E-value=2.4e+02 Score=18.56 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q psy13963 174 TYAVVSSCISFYVPCIVML-GIYLRLYCYAQKHVKS 208 (402)
Q Consensus 174 ~~~~~~~~~~~~~p~~~~~-~~~~~i~~~~~~~~~~ 208 (402)
.|.++..++..+.|++++. ++...+.+.+.+..+.
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777888877764 5666777766655544
No 74
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.70 E-value=5.6e+02 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHhHhhCC
Q psy13963 93 CSTSSILNLCAISLDRYIHIKDP 115 (402)
Q Consensus 93 ~~~~s~~~~~~iaidRy~ai~~p 115 (402)
.....+|.++.+.+||++...-.
T Consensus 49 i~~glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 49 IPFGLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34457888999999999987654
No 75
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.29 E-value=89 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccc
Q psy13963 187 PCIVMLGIYLRLYCYAQKHVKSIRAVT 213 (402)
Q Consensus 187 p~~~~~~~~~~i~~~~~~~~~~~~~~~ 213 (402)
|+++++..+..+++--+|+.++.+...
T Consensus 8 ~~vv~~~i~yf~iRPQkKr~Ke~~em~ 34 (113)
T PRK06531 8 MFVVMLGLIFFMQRQQKKQAQERQNQL 34 (113)
T ss_pred HHHHHHHHHHheechHHHHHHHHHHHH
Confidence 333333333334544444444444333
No 76
>PHA03164 hypothetical protein; Provisional
Probab=21.10 E-value=87 Score=20.61 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=14.9
Q ss_pred cccchhHhHhHHHHHHHhHHH
Q psy13963 42 RRIGNLFLASLAIADLFVAAL 62 (402)
Q Consensus 42 r~~~~~ll~~lai~dll~~l~ 62 (402)
++-+.+.+..||++-+++.++
T Consensus 56 ktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred heeehHHHHHHHHHHHHHHHH
Confidence 445677788999988876543
No 77
>PF15102 TMEM154: TMEM154 protein family
Probab=20.93 E-value=24 Score=26.91 Aligned_cols=7 Identities=14% Similarity=0.719 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy13963 184 FYVPCIV 190 (402)
Q Consensus 184 ~~~p~~~ 190 (402)
.++|+++
T Consensus 61 IlIP~VL 67 (146)
T PF15102_consen 61 ILIPLVL 67 (146)
T ss_pred EeHHHHH
Confidence 3444333
No 78
>COG2322 Predicted membrane protein [Function unknown]
Probab=20.01 E-value=3.7e+02 Score=21.23 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=20.0
Q ss_pred ccchhhhhhHHHHHHHHhhhhhHHHHHH
Q psy13963 241 SDHKAAITVGVIMGTFLLCWVPFFCVNI 268 (402)
Q Consensus 241 ~~~~~~~~~~~i~~~f~i~~~P~~i~~~ 268 (402)
+++++..+.....++|+++++-......
T Consensus 74 ~Hk~aMltA~~l~l~FlvlYltr~~l~~ 101 (177)
T COG2322 74 KHKRAMLTAFTLALVFLVLYLTRHGLGG 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777777788888888877665443
Done!