RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13963
(402 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 192 bits (489), Expect = 6e-59
Identities = 80/271 (29%), Positives = 121/271 (44%), Gaps = 23/271 (8%)
Query: 33 AAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVM 92
I + LR N+FL +LA+ADL + +AL + G W FG C V+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 93 CSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHR 152
+SIL L AIS+DRY+ I PLRY R T + A I +W+LA L+S P+ R
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 153 PPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAV 212
+ + +Y ++S+ + F +P +V+L Y + +K +S +
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180
Query: 213 TRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAF 272
R SSS + KAA + V++ F+LCW+P+ V ++ +
Sbjct: 181 ARAKRSSS--------------------KERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220
Query: 273 CKT---CIPGYWFKILTWLGYSNSAFNPIIY 300
C + I WL Y NS NPIIY
Sbjct: 221 CPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 53.2 bits (128), Expect = 8e-08
Identities = 64/334 (19%), Positives = 124/334 (37%), Gaps = 66/334 (19%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADL-FVAALVMSFALVNDLL 73
V S + F + GNI+V + T ++ +++L +LA++DL FV + + F + +L
Sbjct: 45 VVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFV--MTLPFQIYYYIL 101
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG C + +S+ + +S+DRYI I P++ ++ T K
Sbjct: 102 FQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLV 161
Query: 134 IWLLAALISFVPISL-----GLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPC 188
IW++ ++I PI H + Y + ++ + I +P
Sbjct: 162 IWII-SIIETTPILFVYTTKKDHETLICCMFYNNK----TMNWKLFINFEINIIGMLIPL 216
Query: 189 IVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAIT 248
++L Y ++ + KS + KA
Sbjct: 217 TILLYCYSKILITLKGINKSKKN-------------------------------KKAIKL 245
Query: 249 VGVIMGTFLLCWVPFFCVNIIAAF--------CKTCIPGYWFKILTWLGY-------SNS 293
V +I+ F++ W+PF + + CK K + + + S+
Sbjct: 246 VLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKA------VKYIQYALHVTEIISLSHC 299
Query: 294 AFNPIIYSIYNKEFRDAFKRILITNYAASTAYTC 327
NP+IY+ ++ F K+ L + +S
Sbjct: 300 CINPLIYAFVSEFFNKHKKKSLKLMFTSSGKSIS 333
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 41.8 bits (98), Expect = 3e-04
Identities = 70/317 (22%), Positives = 126/317 (39%), Gaps = 58/317 (18%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFA-LVNDLL 73
VF LL + GN+LV A + R + + +++L ++A++DL LV SF ++++ L
Sbjct: 33 VFYILLFIFGLIGNVLVIAVLIVKRFMFVV-DVYLFNIAMSDLM---LVFSFPFIIHNDL 88
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRY-SRWVTRKVAVGTIA 132
W+FG C + + S++ + IS+DRYI + + + ++ ++ V + A
Sbjct: 89 NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAA 148
Query: 133 CIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVML 192
W+ + ++S P V Y + Y S +F+ I +
Sbjct: 149 --WVCSVILSM----------PAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIF 196
Query: 193 GIYLRL----YCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAIT 248
GI + L YCY++ + T + I
Sbjct: 197 GIVIPLIILIYCYSK-------------------------ILYTLKNCKNKNKTRSIKII 231
Query: 249 VGVIMGTFLLCWVPF---FCVNIIAAFCKTCIPGYWFK-------ILTWLGYSNSAFNPI 298
+ V+ T + WVPF +N + + I Y FK I + + + NPI
Sbjct: 232 LTVVTFTVVF-WVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPI 290
Query: 299 IYSIYNKEFRDAFKRIL 315
IY+ K F+ FK +
Sbjct: 291 IYAFVGKNFKKVFKNMF 307
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 41.9 bits (98), Expect = 4e-04
Identities = 32/130 (24%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLG 74
+F ++ L + GN + ++ + ++ I ++++ +LAI+DL + + F + N+
Sbjct: 103 IFYIIIFILGLFGNAAIIMILFCKK-IKTITDIYIFNLAISDL-IFVIDFPFIIYNEF-D 159
Query: 75 YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACI 134
W+FG C A + S++ + +S+DRY I P+ + ++ R +G I CI
Sbjct: 160 QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKY--RTFNIGIILCI 217
Query: 135 --WLLAALIS 142
W+L+ +I+
Sbjct: 218 ISWILSLIIT 227
Score = 31.5 bits (71), Expect = 0.87
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 244 KAAITVGVIMGTFLLCWVPFFCVNIIAA--------------FCKTCIPGYWFKILTWLG 289
K+ I V +I+ L+CW+P V + A C GY + +
Sbjct: 310 KSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAIS 369
Query: 290 YSNSAFNPIIYSIYNKEFR 308
++ NP+IY++ + FR
Sbjct: 370 LTHCCINPLIYTLIGENFR 388
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 40.7 bits (96), Expect = 7e-04
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 21 IFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWMFGP 80
+ I GN+++ + + LR + + +ADL L V L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLC--LSGEIIFVVLLFTGTQLTR 58
Query: 81 QFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRK 125
C I + T+ + I +DR I +K P+ Y + K
Sbjct: 59 NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSK 103
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 31.4 bits (72), Expect = 0.65
Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 21 IFLSIAG---NILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYWM 77
+S+ G N L+ L+ + A+ AI++ + + + + + LL
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDL-S 59
Query: 78 FGPQFCDTWIAFDVMCSTSSILNLC--AISLDRYIHIKDPLRYSRWVTRKVAVGTIACIW 135
F P+ ++ I ++ I L ISL+R+ + P +Y + + K I IW
Sbjct: 60 FLPELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIW 119
Query: 136 LLAALISFVP 145
++A +IS +
Sbjct: 120 IIAIIISTLF 129
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 30.3 bits (69), Expect = 1.9
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 46 NLFLASLAIADLFVAALVMSFALVNDLL-GYWMFGPQFCDT-------------WIAFDV 91
N+ + +AI D+ M + N + + C D+
Sbjct: 32 NIIMIGIAICDII----TMLLTIYNFIPEFIISYENSECIPPDSYLKVLLDWILESLQDI 87
Query: 92 MCSTSSILNLCAISLDRYIHIKDPL--RYSRWVTRKVAVGTIACIWLLAALISF 143
S+ L + ++L R + +K+P+ + + K + I +++L+ S
Sbjct: 88 SRRCSTWLGV-FMALIRTLVVKNPMSNKIQKLSKPKFGLIIIIIVFILSLPFSI 140
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 30.1 bits (68), Expect = 2.1
Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Query: 19 LLIFLSIAGNILV--CAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLGYW 76
LLI S +L + Y + + + L SL + L ++ L+ +
Sbjct: 262 LLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITL 321
Query: 77 MFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWL 136
+FG ++ ++ L+L ++ + L R + + + + L
Sbjct: 322 LFGEKYASAAPILQLLALAGLFLSLVSL----TSSLLQALGKQRLLLLISLISALLNLIL 377
Query: 137 LAALISFVPI 146
LI +
Sbjct: 378 NLLLIPRFGL 387
>gnl|CDD|225154 COG2245, COG2245, Predicted membrane protein [Function unknown].
Length = 182
Score = 28.1 bits (63), Expect = 6.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 18 SLLIFLSIAGNILVCAAIYTDR---GLRRIGNLFLASLAIADLFVAALVM---SFALVND 71
L LS+ G +LV A+Y G RI N +L ++ + + ++ F+LV
Sbjct: 25 WPLWILSLVGLVLVLVALYMISKQVGEDRIFNNYLIAVVLGLVGFVVVIFATAGFSLVAL 84
Query: 72 LLGYWM 77
LLG +M
Sbjct: 85 LLGTFM 90
>gnl|CDD|236590 PRK09613, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 469
Score = 28.6 bits (65), Expect = 7.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 221 SLPRPSPALHITTTSSPYHVSDH--KAAITV--------GVIMGT 255
S+PR PA + PY VSD K + + G+I+ T
Sbjct: 273 SVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILST 317
>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase.
Length = 336
Score = 28.5 bits (64), Expect = 7.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYI--HIKDPLRY 118
Y P F DTW + VM S +L A LD I I L+Y
Sbjct: 248 PYTAHVPSFADTW-GW-VMASDHPFADLSAEELDSRIKERIDGELKY 292
>gnl|CDD|222638 pfam14269, Arylsulfotran_2, Arylsulfotransferase (ASST).
Length = 301
Score = 28.1 bits (63), Expect = 7.8
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 3 TITTPFSSPPPGVFLSLL----IFLSIAGNILVCAAIYTDRGLRRIG 45
T+ F +P P F S + ++ G I V A T L +G
Sbjct: 41 TLPGNFVTPDPSTFDSYIDHHESEITDDGTIWVTAVNVTQADLTSVG 87
>gnl|CDD|215016 smart01080, CHASE2, CHASE2 is an extracellular sensory domain,
which is present in various classes of transmembrane
receptors that are parts of signal transduction pathways
in bacteria. Specifically, CHASE2 domains are found in
histidine kinases, adenylate cyclases, serine/threonine
kinases and predicted diguanylate
cyclases/phosphodiesterases. Environmental factors that
are recognised by CHASE2 domains are not known at this
time.
Length = 303
Score = 28.1 bits (63), Expect = 8.1
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 3 TITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAAL 62
TPFS PGV I N + + R LR A+ L + L
Sbjct: 252 LFPTPFSRVMPGVE--------IHANAI--DNLLDGRFLRPAP----PWWALLLLLLLWL 297
Query: 63 VMSFAL 68
++ L
Sbjct: 298 LLGLLL 303
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.458
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,788,809
Number of extensions: 2021815
Number of successful extensions: 2924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2899
Number of HSP's successfully gapped: 88
Length of query: 402
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 303
Effective length of database: 6,546,556
Effective search space: 1983606468
Effective search space used: 1983606468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)