RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13963
(402 letters)
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 364 bits (936), Expect = e-123
Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 14/340 (4%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYE-GELPTCALDLTPTYAVVSSCISFYVPCIVML 192
+W+++ L SF+PI + +R + E C YA+ SS +SFYVP ++M+
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 365
Query: 193 GIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHV--SDHKAAITVG 250
+Y R++ A++ ++ I + +HKA T+G
Sbjct: 366 FVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLG 425
Query: 251 VIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDA 310
+IMGTF LCW+PFF VNI+ I + +L W+GY NS FNP+IY + +FR A
Sbjct: 426 IIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIA 484
Query: 311 FKRILITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAA 350
F+ +L + G+ Y++ G+ + +
Sbjct: 485 FQELL----------CLRRSSLKAYGNGYSSNGNTGEQSG 514
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 333 bits (857), Expect = e-113
Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 19/303 (6%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
+ ++L++ L +AGN+LV AAI + + L+ + NLF+ SLA ADL V LV+ F +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
G W++G C+ W + DV+C T+SI LC I++DRY+ I P RY +TR A I
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPT-CALDLTPTYAVVSSCISFYVPCIVML 192
+W ++AL+SF+PI + R P L + P C YA+ SS ISFY+P ++M+
Sbjct: 135 VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMI 194
Query: 193 GIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVI 252
+ LR+Y A++ ++ I ++ S L R +HKA T+G+I
Sbjct: 195 FVALRVYREAKEQIRKIDRASKRKTSRVMLMR-----------------EHKALKTLGII 237
Query: 253 MGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFK 312
MG F LCW+PFF VNI+ F + +P + F WLGY+NSA NPIIY + +FR AFK
Sbjct: 238 MGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK 296
Query: 313 RIL 315
R+L
Sbjct: 297 RLL 299
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 273 bits (700), Expect = 1e-87
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 1/234 (0%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
G+ +SL++ + GN+LV AI L+ + N F+ SLA ADL + V+ F + L+
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W FG +C+ W + DV+C T+SI LC I++DRY I P +Y +T+ A I
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 134 IWLLAALISFVPISLGLHRPPVPVELY-EGELPTCALDLTPTYAVVSSCISFYVPCIVML 192
+W+++ L SF+PI + +R + E C YA+ SS +SFYVP ++M+
Sbjct: 164 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 223
Query: 193 GIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAA 246
+Y R++ A++ + + + + + + S A
Sbjct: 224 FVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 277
Score = 114 bits (287), Expect = 4e-28
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 168 ALDLTPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSI-RAVTRPLPSSSSLPRPS 226
+LD A+++ + LR+ + ++ A +R + + +
Sbjct: 326 SLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRV 385
Query: 227 PALHITTTSSPY--HVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKI 284
T T Y + +HKA T+G+IMGTF LCW+PFF VNI+ I + +
Sbjct: 386 ITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYIL 445
Query: 285 LTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYT 326
L W+GY NS FNP+IY + +FR AF+ +L ++ AY
Sbjct: 446 LNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYG 486
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 260 bits (666), Expect = 5e-83
Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 2/235 (0%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
+ L ++I GNILV +I +R L+ + N FL SLA ADL + M+ + ++
Sbjct: 27 VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
GYW GP CD W+A D + S +S++NL IS DRY + PL Y T K+A IA
Sbjct: 87 GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAA 146
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLG 193
W+L+ ++ I L + +GE ++ +FY+P I+M
Sbjct: 147 AWVLSFILWAPAI-LFWQFIVGVRTVEDGE-CYIQFFSNAAVTFGTAIAAFYLPVIIMTV 204
Query: 194 IYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAIT 248
+Y + ++ + + + + + + S A
Sbjct: 205 LYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK 259
Score = 116 bits (291), Expect = 7e-29
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 235 SSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSA 294
+ P + K T+ I+ F++ W P+ + +I FC CIP + I WL Y NS
Sbjct: 376 AYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINST 435
Query: 295 FNPIIYSIYNKEFRDAFKRIL 315
NP Y++ N F+ FK +L
Sbjct: 436 INPACYALCNATFKKTFKHLL 456
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 256 bits (654), Expect = 2e-81
Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 2/224 (0%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
V LS + +++ N+LV A+ ++R L +GNL++ SL++ADL V A+VM ++ L+
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
W G C W++ D + ST+SI ++ + +DRY ++ PLRY ++ T+ A TI
Sbjct: 72 SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILG 131
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLG 193
W L+ L PI LG + + + + V+++ I+FY+P ++ML
Sbjct: 132 AWFLSFLWVI-PI-LGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLW 189
Query: 194 IYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSP 237
Y ++Y ++H + + + + +
Sbjct: 190 FYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL 233
Score = 115 bits (289), Expect = 1e-28
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 199 YCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLL 258
+ + V ++ + + + T + + + KAA +G IM F+L
Sbjct: 325 KRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFIL 384
Query: 259 CWVPFFCVNIIAAFCKTCIPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315
CW+P+F ++ AFCK C + WLGY NS NP+IY + N+ F+ FKRIL
Sbjct: 385 CWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 243 bits (621), Expect = 2e-76
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 12/234 (5%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLG 74
+ L+I GN+LVC A++ + L+ + N F+ SLA AD+ V L + FA+ +
Sbjct: 36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--IST 93
Query: 75 YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACI 134
+ C F ++ + SSI +L AI++DRYI I+ PLRY+ VT A G IA
Sbjct: 94 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 153
Query: 135 WLLAALISFVPISLGLHRPPVPVELYEGEL------PTCALD---LTPTYAVVSSCISFY 185
W+L+ I P+ LG + P E C + +
Sbjct: 154 WVLSFAIGLTPM-LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL 212
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYH 239
VP ++MLG+YLR++ A++ + + L + + + +
Sbjct: 213 VPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKM 266
Score = 105 bits (264), Expect = 3e-25
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 198 LYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFL 257
L + VK +A L ++ + + + AA ++ +I+G F
Sbjct: 309 LKLANEGKVKEAQAAAEQLKTTRNAYIQKYLER----ARSTLQKEVHAAKSLAIIVGLFA 364
Query: 258 LCWVPFFCVNIIAAFCKTC--IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315
LCW+P +N FC C P + + L ++NS NP IY+ +EFR F++I+
Sbjct: 365 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 424
Query: 316 ITNYAASTAYTCCLCYVCCRGDAYAAGGDFRDY 348
+V + + + A +
Sbjct: 425 -------------RSHVLRQQEPFKAHHHHHHH 444
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 242 bits (619), Expect = 7e-76
Identities = 66/250 (26%), Positives = 110/250 (44%), Gaps = 18/250 (7%)
Query: 3 TITTPFSSPPP------GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIAD 56
+ P +PP + L+I GN+LVC A++ + L+ + N F+ SLA AD
Sbjct: 8 AMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAAD 67
Query: 57 LFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPL 116
+ V L + FA+ + + C F ++ + SSI +L AI++DRYI I+ PL
Sbjct: 68 IAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 125
Query: 117 RYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYE------GELPTCALD 170
RY+ VT A G IA W+L+ I P+ LG + P E C +
Sbjct: 126 RYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCGQPKEGKNHSQGCGEGQVACLFE 184
Query: 171 --LTPTYAVVSSCI-SFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSP 227
+ Y V + VP ++MLG+YLR++ A++ + + + + +
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 228 ALHITTTSSP 237
+
Sbjct: 245 GYYTIGIGHL 254
Score = 115 bits (288), Expect = 2e-28
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 214 RPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFC 273
P+ + + + AA ++ +I+G F LCW+P +N FC
Sbjct: 362 NQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC 421
Query: 274 KTC--IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCY 331
C P + + L ++NS NP IY+ +EFR F++I+ +
Sbjct: 422 PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII-------------RSH 468
Query: 332 VCCRGDAYAAGGDFRDY 348
V + + + A +
Sbjct: 469 VLRQQEPFKAHHHHHHH 485
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 241 bits (617), Expect = 1e-75
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 14/235 (5%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
+ LI + GN LVC A+ +R L+ N + SLA+ADL VA LVM + + ++
Sbjct: 42 ALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT 101
Query: 74 G-YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTR---KVAVG 129
G W F CD ++ DVM T+SI NLCAIS+DRY + P+ Y + +
Sbjct: 102 GGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVAL 161
Query: 130 TIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCI 189
I +W+LA +S P+ G + P C++ P + + SS +SFY+P
Sbjct: 162 MITAVWVLAFAVSC-PLLFGFNTTGDP--------TVCSIS-NPDFVIYSSVVSFYLPFG 211
Query: 190 VMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHK 244
V + +Y R+Y ++ + + L T + ++
Sbjct: 212 VTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSP 266
Score = 115 bits (288), Expect = 2e-28
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 210 RAVTRPLPSSSSLPRPSPALHITTTSSPYHVS--DHKAAITVGVIMGTFLLCWVPFFCVN 267
A +R + + + T T Y V + KA V +++G F++CW+PFF +
Sbjct: 362 LAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTH 421
Query: 268 IIAAFCKTC-IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315
++ C+TC + + TWLGY NSA NP+IY+ +N EFR AF +IL
Sbjct: 422 VLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 183 bits (465), Expect = 2e-53
Identities = 73/351 (20%), Positives = 135/351 (38%), Gaps = 43/351 (12%)
Query: 8 FSSPPP------GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAA 61
F P G+F+ + + GN +V + L+ N+F+ +LA +D +
Sbjct: 26 FDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSL 85
Query: 62 L-VMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSR 120
+ ++ L W+FG C + + SI+ + IS+DRY I P+ S+
Sbjct: 86 VNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASK 145
Query: 121 WVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALD------LTPT 174
++ + A I +WL + L + PI G EG L C+ D T +
Sbjct: 146 KMSHRRAFIMIIFVWLWSVLWAIGPI-FGWGAYT-----LEGVLCNCSFDYISRDSTTRS 199
Query: 175 YAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTT 234
+ + F+ P +++ Y + H K + A+ + L +
Sbjct: 200 NILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKEL-----------RK 248
Query: 235 SSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKIL-TWLGYSNS 293
+ ++ + A VI+ FLL W P+ V ++A F + L +++
Sbjct: 249 AQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASA 308
Query: 294 AFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAAGGD 344
NP+IYS+ + +FR+A + + CC+ D D
Sbjct: 309 IHNPMIYSVSHPKFREAISQTF-----------PWVL-TCCQFDDKETEDD 347
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 173 bits (440), Expect = 2e-49
Identities = 37/244 (15%), Positives = 79/244 (32%), Gaps = 9/244 (3%)
Query: 3 TITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAAL 62
+ S V L+ I NI V I+ + R F+ +LA++DL
Sbjct: 56 SADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVA 115
Query: 63 VMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWV 122
+ L++ + P + ++S+ +L AI+++RYI + +
Sbjct: 116 YTANLLLS-GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKM-KLHNGS 173
Query: 123 TRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCI 182
I+ W+++ ++ +PI +G + + L L + ++
Sbjct: 174 NNFRLFLLISACWVISLILGGLPI-MGWNCISALSS------CSTVLPLYHKHYILFCTT 226
Query: 183 SFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSD 242
F + + ++ +Y R+Y + I
Sbjct: 227 VFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS 286
Query: 243 HKAA 246
AA
Sbjct: 287 LNAA 290
Score = 101 bits (251), Expect = 2e-23
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 242 DHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPG--YWFKILTWLGYSNSAFNPII 299
+ TV +++ F+ CW P F + ++ CK + + L NS NPII
Sbjct: 416 NVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPII 475
Query: 300 YSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAY 339
Y++ NKE R AF RI+ V +G +
Sbjct: 476 YTLTNKEMRRAFIRIM-----------GRPLEVLFQGPHH 504
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 169 bits (430), Expect = 2e-49
Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 39/311 (12%)
Query: 14 GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
++ LLI L N L + LR N L +LA+ADLF+ + L L
Sbjct: 42 AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 101
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
GY++FGP C+ F + ++ +L ++++RY+ + P+ R+ A+ +A
Sbjct: 102 GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAF 160
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALD-LTP-------TYAVVSSCISFY 185
W++A + P+ +G R + EG +C +D TP ++ + + F
Sbjct: 161 TWVMALACAAPPL-VGWSR-----YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 214
Query: 186 VPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKA 245
+P IV+ Y +L V +++ S++ ++ +
Sbjct: 215 IPLIVIFFCYGQL-------VFTVKEAAAQQQESAT----------------TQKAEKEV 251
Query: 246 AITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKIL-TWLGYSNSAFNPIIYSIYN 304
V +++ FL+CW+P+ V + G F + + +++ +NP+IY + N
Sbjct: 252 TRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMN 311
Query: 305 KEFRDAFKRIL 315
K+FR+ L
Sbjct: 312 KQFRNCMVTTL 322
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 166 bits (423), Expect = 3e-48
Identities = 68/323 (21%), Positives = 121/323 (37%), Gaps = 32/323 (9%)
Query: 3 TITTPFSSPPP-----GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADL 57
+ F P ++++ S+ GN++V I + +R + N FL +LA A+
Sbjct: 20 SEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEA 79
Query: 58 FVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLR 117
+AA + W +G +C F + +SI ++ A++ DRY+ I PL+
Sbjct: 80 SMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ 139
Query: 118 YSRWVTRKVAVGTIACIWLLAALISF-VPISLGLHRPPVPVELYEGELPTCALDLTPTYA 176
+ I IW+LA L++F P V Y
Sbjct: 140 PRL--SATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYH 197
Query: 177 VVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSS 236
+ + + +++P +V+ Y + ++ A P SS A
Sbjct: 198 ICVTVLIYFLPLLVIGYAYTVVG-------ITLWASEIPGDSSDRYHEQVSAK------- 243
Query: 237 PYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILT----WLGYSN 292
K + V++ TF +CW+PF ++ + + + WL S+
Sbjct: 244 ------RKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSS 297
Query: 293 SAFNPIIYSIYNKEFRDAFKRIL 315
+ +NPIIY N FR FK
Sbjct: 298 TMYNPIIYCCLNDRFRLGFKHAF 320
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 162 bits (412), Expect = 6e-46
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 34/307 (11%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLG 74
+ + GN LV I ++ N+++ +LA+AD V L + F + LLG
Sbjct: 130 GLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVL-LTLPFQGTDILLG 188
Query: 75 YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACI 134
+W FG C T IA D +S L A+S+DRY+ I P+R T A I
Sbjct: 189 FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAI 248
Query: 135 WLLAALISF-VPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLG 193
W LA+++ V I +E E+PT P +A+ SF VP +V+
Sbjct: 249 WALASVVGVPVAIMGSAQVEDEEIECLV-EIPTPQDYWGPVFAICIFLFSFIVPVLVI-- 305
Query: 194 IYLRLYCYAQ--KHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGV 251
CY+ + ++ +R ++ S + + V V
Sbjct: 306 ----SVCYSLMIRRLRGVRLLSG--------------------SREKDRNLRRITRLVLV 341
Query: 252 IMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKIL---TWLGYSNSAFNPIIYSIYNKEFR 308
++ F+ CW P + IL T LGY NS NPI+Y+ ++ F+
Sbjct: 342 VVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK 401
Query: 309 DAFKRIL 315
F++
Sbjct: 402 ACFRKFC 408
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 115 bits (289), Expect = 1e-28
Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 37/262 (14%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIAD-LFVAALVMSFALVNDLL 73
S++ + + GN LV I ++ N+++ +LA+AD L + F VN L+
Sbjct: 22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT--STLPFQSVNYLM 79
Query: 74 GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
G W FG C I+ D +SI LC +S+DRYI + P++ + T + A C
Sbjct: 80 GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVC 139
Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCALDLTPTYAVVSSCISFYVPCIVMLG 193
W+L++ I + + + + +F +P +++
Sbjct: 140 NWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITV 199
Query: 194 IYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGVIM 253
Y + + + +
Sbjct: 200 CYGLMILRLKSVRNI----------------------------------FEMLRIDEGLR 225
Query: 254 GTFLLCWVPFFCVNIIAAFCKT 275
++ + I K+
Sbjct: 226 LKIYKNTEGYYTIGIGHLLTKS 247
Score = 65.8 bits (160), Expect = 6e-12
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 241 SDHKAAITVGVIMGTFLLCWVPFFCVNIIAAF---CKTCIPGYWFKILTWLGYSNSAFNP 297
+ + V V++ F++CW P II A +T + LGY+NS NP
Sbjct: 377 NLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNP 436
Query: 298 IIYSIYNKEFRDAFKRIL 315
++Y+ ++ F+ F+
Sbjct: 437 VLYAFLDENFKRCFREFC 454
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 112 bits (282), Expect = 2e-27
Identities = 46/288 (15%), Positives = 83/288 (28%), Gaps = 58/288 (20%)
Query: 15 VFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLLG 74
S++ I GN LV + + LR + + + L++ADL + + F D +
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPF-WAVDAVA 110
Query: 75 YWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACI 134
W FG C + SS+ L ISLDRY+ I R +
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGV 170
Query: 135 WLLAALISFVPISLGLHRPPVPVELY-----EGELPTCALDLTP-----TYAVVSSCISF 184
W+ A L++ +P ++ + C + +
Sbjct: 171 WIPALLLT------------IPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGL 218
Query: 185 YVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHK 244
+P IV+ L CY I + S + +
Sbjct: 219 ILPGIVI------LSCY---------------------------CIIISKLSHSGSNIFE 245
Query: 245 AAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILT-WLGYS 291
+ ++ + I K+ L +G +
Sbjct: 246 MLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRN 293
Score = 56.1 bits (135), Expect = 8e-09
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 231 ITTTSSPYHVSDHKAAITVGVIMGTFLLCWVPFFCVNIIAAFCKTCIPG----------Y 280
KA T +++ F CW+P++ I +F I
Sbjct: 397 TWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHK 456
Query: 281 WFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315
W I L + + NPI+Y+ +F+ + + L
Sbjct: 457 WISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 48.6 bits (116), Expect = 2e-08
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 TSSILNLCAISLDRYIHIKDPLRYSRWVTRK 125
TSSI++LCAISLDRY I + Y+ T +
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPR 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 53/342 (15%), Positives = 98/342 (28%), Gaps = 134/342 (39%)
Query: 4 ITTPFSSPPPGVFLSL-----LIFLSIAGNILVCAAIYTDRGLRRIGNLFL----ASLAI 54
+ P ++P LS+ LI + + +V A + G G L A+
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL---GFTP-GELRSYLKGATGHS 274
Query: 55 ADLFVAALVMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKD 114
L V A+ ++ D+W +F ++ ++
Sbjct: 275 QGL-VTAVAIAET----------------DSWESF-------------------FVSVRK 298
Query: 115 PLRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRPPVPVE--LYEGE-LPTCAL-- 169
+ ++ G + ++ SL PP +E L E +P+ L
Sbjct: 299 AITVLFFI------G-------VRCYEAYPNTSL----PPSILEDSLENNEGVPSPMLSI 341
Query: 170 -DLT---------------PTYAVVSSCISFY-VP-CIVMLGIYLRLYCYAQKHVKSIRA 211
+LT P V IS +V+ G LY ++R
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVE--ISLVNGAKNLVVSGPPQSLYGL----NLTLRK 395
Query: 212 VTRP-------LPSSSSLPRPS----PALHITTTSSPYHVSDH--KAAITVGVIMGTFLL 258
P +P S + S P +SP+H S A+ + + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLP------VASPFH-SHLLVPASDLINKDLVKNNV 448
Query: 259 CW------VPFFCV-----------NIIAAFCK--TCIPGYW 281
+ +P + +I +P W
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 42.7 bits (100), Expect = 2e-04
Identities = 49/295 (16%), Positives = 79/295 (26%), Gaps = 86/295 (29%)
Query: 4 ITTPFSSPPPGVFLSLLI---------FL------SIAGNILVCAAIYTDRGLRRIGNLF 48
+++ G F +L +L ++A +L + I N
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 49 LASLAIAD---------LFVAALVMSFALVNDLLGYWMFGPQ------FC------DTWI 87
A + LF A + L +FG Q F T+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQL------VAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 88 AF--DVMCSTSSIL-NLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIACIWLLAALISFV 144
D++ ++ L L +LD L W+ +LL+ IS
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--YLLSIPISCP 239
Query: 145 PISL-------------GLHRPPVPVELYE---GELPTCALDLTPTYAVVSSCI------ 182
I + G P EL G + L V + I
Sbjct: 240 LIGVIQLAHYVVTAKLLGFT----PGELRSYLKG-ATGHSQGL-----VTAVAIAETDSW 289
Query: 183 -SFYVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPR----PSPALHIT 232
SF+V + + + + P SL PSP L I+
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSILEDSLENNEGVPSPMLSIS 342
Score = 36.6 bits (84), Expect = 0.018
Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 71/196 (36%)
Query: 136 LLAALISFVPISL-GLHRPPVPVELYEGELPTCALDL---------TPTYAVVSSC-ISF 184
L+ LI F +L L R + E + L++ TP + S IS
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQ----GLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 185 YVPCIVMLGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHK 244
P I ++ +L Y VT +P + +
Sbjct: 239 --PLIGVI----QLAHYV---------VTA----------------KLLGFTPGELRSYL 267
Query: 245 AAITV---GVIMGTFL---LCWVPFFCVNIIAAFCKTCIPGYWFKILTWLG------YSN 292
T G++ + W FF ++ A +L ++G Y N
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFV-SVRKAI----------TVLFFIGVRCYEAYPN 316
Query: 293 SAFNPII--YSIYNKE 306
++ P I S+ N E
Sbjct: 317 TSLPPSILEDSLENNE 332
Score = 35.4 bits (81), Expect = 0.035
Identities = 34/225 (15%), Positives = 60/225 (26%), Gaps = 86/225 (38%)
Query: 2 CTITTPFSSPPPGVFLSLLIFLSIAGN------ILVCAAIYTDRGLRRIGNLFLASL-AI 54
C P +S PP + S+ N +L L + +
Sbjct: 310 CYEAYPNTSLPPSILED-----SLENNEGVPSPMLSI------SNLTQ------EQVQDY 352
Query: 55 ADLFVAAL----VMSFALVNDLLGYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYI 110
+ + L + +LVN G + V+ L L+ +
Sbjct: 353 VNKTNSHLPAGKQVEISLVN--------GAK------NL-VVSGPPQSL----YGLNLTL 393
Query: 111 H-IKDP-------LRYSRWVTRKVAVGTIACIWLLAALISFVPISLGLHRP-------PV 155
K P + +S RK+ F+P++ H +
Sbjct: 394 RKAKAPSGLDQSRIPFSE---RKLKFSN-----------RFLPVASPFHSHLLVPASDLI 439
Query: 156 PVELYEGELPTCALDL-TPTYAVV---------SSCISFYVPCIV 190
+L + + A D+ P Y S V CI+
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 30.4 bits (68), Expect = 1.5
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 43/141 (30%)
Query: 4 ITTPFSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLAS-LAI-------- 54
+ +PF S +LV A+ ++ L + F A + I
Sbjct: 423 VASPFHSH-----------------LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 55 ADLFVAALVMSFALVNDLLG---YWMFGPQFCDTWI-AFDVMCSTSSILNLCAISLDRYI 110
+DL V + +S +V+ ++ W QF T I F S + L
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG-GASGLGVLTH------- 517
Query: 111 HIKDPLRYSRWVTRKVAVGTI 131
KD V R + GT+
Sbjct: 518 RNKD----GTGV-RVIVAGTL 533
Score = 29.2 bits (65), Expect = 2.9
Identities = 21/98 (21%), Positives = 25/98 (25%), Gaps = 40/98 (40%)
Query: 8 FSSPPPGVFLSLLIFLSIAGNILVCAAIYTDRG----LRRIGN----LFLASLAI----- 54
F + G + IF I + YT R L L L A
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHS----TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 55 ------ADLFVA--------AL-----VMSFA----LV 69
AD A AL VMS +V
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 36/327 (11%), Positives = 88/327 (26%), Gaps = 111/327 (33%)
Query: 83 CDTWI--AFDVMCST------SSILNLCAISLDRYIHI-----KDPLR-------YSRWV 122
+ AF++ C + + +S HI L +++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 123 TRKV-------------AVGTIA-------CIW------LLAALISFVPISLGLHRPPVP 156
+ + IA W L + + SL + P
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 157 VELYEGELPTCAL---DL---TPTYAVVSSCISFYVPCIVMLGIYLRLYCYAQKHVKSIR 210
++++ ++ T +++ + +V+ L Y +K K
Sbjct: 372 RKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPK--- 422
Query: 211 AVTRPLPSSSSLPRPSPALHITTTSSPYHVSD-HKAAITVGVIMGTFLLCWVPFFCVNII 269
S+ S+ P++++ + H++ + NI
Sbjct: 423 ------ESTISI----PSIYLELKVKLENEYALHRSIVD----------------HYNIP 456
Query: 270 AAFCK-TCIP----GYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYA---A 321
F IP Y++ + +G+ + +I + E F+ + + ++
Sbjct: 457 KTFDSDDLIPPYLDQYFY---SHIGHH-------LKNIEHPERMTLFRMVFL-DFRFLEQ 505
Query: 322 STAYTCCLCYVCCRGDAYAAGGDFRDY 348
+ G + Y
Sbjct: 506 KIRHDSTAW--NASGSILNTLQQLKFY 530
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.008
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 12/36 (33%)
Query: 203 QKHVKSIRAVTRPLPSSSSL----PRPSPALHITTT 234
+K ++++ + +SL +PAL I T
Sbjct: 18 EK--QALKKLQ------ASLKLYADDSAPALAIKAT 45
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 27.8 bits (61), Expect = 0.67
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 282 FKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRIL 315
F + L NS NPIIY++ +K+ R AF+ +
Sbjct: 3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB:
3por_A*
Length = 301
Score = 30.6 bits (68), Expect = 0.88
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 15/107 (14%)
Query: 282 FKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRGDAYAA 341
+ + + A + Y S T A
Sbjct: 195 TNVKAYYADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDST---------FGATTV 245
Query: 342 GGDFR--DYAATSRGAGFGASGDWDLGGG----GKVGNSNNNNYSDY 382
GG + D +G +DLGGG G + +++ N
Sbjct: 246 GGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMV 292
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra
protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP:
f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A*
2prn_A* 8prn_A* 1h6s_1
Length = 289
Score = 30.1 bits (67), Expect = 1.3
Identities = 9/66 (13%), Positives = 12/66 (18%), Gaps = 13/66 (19%)
Query: 317 TNYAASTAYTCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGG----GKVG 372
Y A D +G D+ G G V
Sbjct: 222 DQVTLYGNYAF---------GATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQ 272
Query: 373 NSNNNN 378
+ N
Sbjct: 273 SGFANE 278
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 4.1
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 26/80 (32%)
Query: 295 FNPIIYSIYNKEFR--DAFKRILITNYAASTAYTCCLCYVCCRGDAYA-AG----GDFRD 347
+N Y I + D T + + +A+ +G +
Sbjct: 994 WNAKTYGISDDIISQVDPI-----TLFV-----------LVSVVEAFIASGITDPYEMYK 1037
Query: 348 YAATSRGAGFGASGDWDLGG 367
Y S SG +GG
Sbjct: 1038 YVHVSEVGNCSGSG---MGG 1054
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.458
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,382,539
Number of extensions: 385465
Number of successful extensions: 1026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 42
Length of query: 402
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 306
Effective length of database: 4,021,377
Effective search space: 1230541362
Effective search space used: 1230541362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.6 bits)