RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13963
         (402 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score =  121 bits (303), Expect = 1e-31
 Identities = 61/305 (20%), Positives = 121/305 (39%), Gaps = 27/305 (8%)

Query: 14  GVFLSLLIFLSIAGNILVCAAIYTDRGLRRIGNLFLASLAIADLFVAALVMSFALVNDLL 73
             ++ LLI L    N L        + LR   N  L +LA+ADLF+     +  L   L 
Sbjct: 41  AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 100

Query: 74  GYWMFGPQFCDTWIAFDVMCSTSSILNLCAISLDRYIHIKDPLRYSRWVTRKVAVGTIAC 133
           GY++FGP  C+    F  +    ++ +L  ++++RY+ +  P+          A+  +A 
Sbjct: 101 GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAF 159

Query: 134 IWLLAALISFVPISLGLHRPPVPVELYEGELPTCAL--DLTPTYAVVSSCISFYVPCIVM 191
            W++A   +  P+       P  ++   G             ++ +    + F +P IV+
Sbjct: 160 TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 192 LGIYLRLYCYAQKHVKSIRAVTRPLPSSSSLPRPSPALHITTTSSPYHVSDHKAAITVGV 251
              Y +L    ++     +                        S+    ++ +    V +
Sbjct: 220 FFCYGQLVFTVKEAAAQQQ-----------------------ESATTQKAEKEVTRMVII 256

Query: 252 IMGTFLLCWVPFFCVNIIAAFCKTCIPGYWFKILT-WLGYSNSAFNPIIYSIYNKEFRDA 310
           ++  FL+CW+P+  V       +    G  F  +  +   +++ +NP+IY + NK+FR+ 
Sbjct: 257 MVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC 316

Query: 311 FKRIL 315
               L
Sbjct: 317 MVTTL 321


>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score = 28.1 bits (62), Expect = 1.5
 Identities = 15/129 (11%), Positives = 26/129 (20%), Gaps = 8/129 (6%)

Query: 261 VPFFCVNIIA----AFCKTCIPGYWFKILTWLGYSNSAFNPI-IYSIYNKEFRDAFKRIL 315
           V F  V+ IA        T        I +          P    +   +          
Sbjct: 23  VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 82

Query: 316 ITNYAASTAY-TCCLCYVCCRGDAYAAGGDFRDYAATSRGAGFGASGDWDLGGGGKVGNS 374
           +        Y    L     R      GG  R     +         ++     G     
Sbjct: 83  VPLRHILLIYDDTSLPNGVLRLQKK--GGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPP 140

Query: 375 NNNNYSDYV 383
              +   ++
Sbjct: 141 GKMDPRAFL 149


>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
           (Helicoverpa zea) [TaxId: 7113]}
          Length = 312

 Score = 27.4 bits (60), Expect = 3.3
 Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 5/78 (6%)

Query: 277 IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRG 336
                   LT   + +    P  +     +       + +   +   +           G
Sbjct: 182 HLARMALYLTMHSFGSMILYPWGHDGSLSQNALGLHTVGVAMASVIQSNALPNFPPYTVG 241

Query: 337 DA-----YAAGGDFRDYA 349
           ++     Y   G   DYA
Sbjct: 242 NSALVIGYYIAGSSEDYA 259


>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 304

 Score = 26.3 bits (57), Expect = 6.5
 Identities = 16/75 (21%), Positives = 17/75 (22%), Gaps = 3/75 (4%)

Query: 277 IPGYWFKILTWLGYSNSAFNPIIYSIYNKEFRDAFKRILITNYAASTAYTCCLCYVCCRG 336
                   LT   YS     P  Y     E        L        A      Y    G
Sbjct: 181 NLSSIKAYLTIHSYSQMILYPYSYDYKLPENNAELNN-LAKAAVKELATLYGTKYTYGPG 239

Query: 337 DA--YAAGGDFRDYA 349
               Y A G   D+A
Sbjct: 240 ATTIYPAAGGSDDWA 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,311
Number of extensions: 74962
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)