BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13966
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 235 bits (600), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 130/151 (86%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADARI+INRA++ECQSH+LTVEDPVT+EYITRYIA LKQ+YTQSNGRRPFGIS LI
Sbjct: 75 GLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIV 134
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
GFD+DG PRLYQT+PSG Y+ WKANA GR AK+VREFLEK Y + + T+ TIKL I+A
Sbjct: 135 GFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKA 194
Query: 122 LLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
LLEVVQSG KN+E+AVMR +P+++L+ +I
Sbjct: 195 LLEVVQSGGKNIELAVMRRDQPLKILNPEEI 225
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 235 bits (600), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 130/151 (86%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADARI+INRA++ECQSH+LTVEDPVT+EYITRYIA LKQ+YTQSNGRRPFGIS LI
Sbjct: 75 GLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIV 134
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
GFD+DG PRLYQT+PSG Y+ WKANA GR AK+VREFLEK Y + + T+ TIKL I+A
Sbjct: 135 GFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKA 194
Query: 122 LLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
LLEVVQSG KN+E+AVMR +P+++L+ +I
Sbjct: 195 LLEVVQSGGKNIELAVMRRDQPLKILNPEEI 225
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 233 bits (594), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 129/151 (85%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADARI+INRA++ECQSH+LTVEDPVT+EYITRYIA LKQ+YTQSNGRRPFGIS LI
Sbjct: 75 GLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIV 134
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
GFD+DG PRLYQT+PSG Y+ WKANA GR AK+VREFLEK Y E + T+ TIKL I+A
Sbjct: 135 GFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKA 194
Query: 122 LLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
LLEVVQSG KN+E+AVMR + +++L+ +I
Sbjct: 195 LLEVVQSGGKNIELAVMRRDQSLKILNPEEI 225
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 186 bits (473), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 60 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 119
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY-KSEEMTTEKATIKLA 118
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y + E T + +KL
Sbjct: 120 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLT 179
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
+R+LLEVVQ+G KN+EI V++ + LS +I
Sbjct: 180 VRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEI 213
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 76 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 135
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY-KSEEMTTEKATIKLA 118
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y + E T + +KL
Sbjct: 136 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLT 195
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
+R+LLEVVQ+G KN+EI V++ + LS +I
Sbjct: 196 VRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEI 229
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 74 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 133
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY-KSEEMTTEKATIKLA 118
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y + E T + +KL
Sbjct: 134 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLT 193
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
+R+LLEVVQ+G KN+EI V++ + LS +I
Sbjct: 194 VRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEI 227
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 76 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 135
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY-KSEEMTTEKATIKLA 118
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y + E T + +KL
Sbjct: 136 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLT 195
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQI 152
+R+LLEVVQ+G KN+EI V++ + LS +I
Sbjct: 196 VRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEI 229
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA+IE Q ++LT ++P+T++ + + I KQ+YTQ G RPFG+S LI
Sbjct: 70 SGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLI 129
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSE 106
G D P+LY+T+PSG E+KA A G V EF EK Y+ +
Sbjct: 130 AGVDE--VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDD 173
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 3/122 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA++E Q ++LT + +++E + + I +KQ YTQ G RPFG+S LI
Sbjct: 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLI 142
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + + RL++T+PSG E+KA A G V E LEK Y+ +++T ++ ++LAI
Sbjct: 143 AGIDKN-EARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR-DDITLDEG-LELAIT 199
Query: 121 AL 122
AL
Sbjct: 200 AL 201
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA+IE Q ++LT + P+T++ + + I KQ+YTQ G RPFG+S LI
Sbjct: 79 SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLI 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSE 106
G + P+LY+T+PSG E+KA A G V EF EK Y+ +
Sbjct: 139 AGV--NEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDD 182
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 5/139 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G+ D R+L++RA+ Q + L ++P+ + + +A + Q+YTQS G RPFG+S LI
Sbjct: 76 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLI 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G++ +G+P L+Q++PSG Y+ WKA A G++ + FLEK Y +E++ E A I AI
Sbjct: 136 CGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY-NEDLELEDA-IHTAIL 192
Query: 121 ALLEVV--QSGQKNLEIAV 137
L E Q + N+E+ +
Sbjct: 193 TLKESFEGQMTEDNIEVGI 211
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 5/139 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G+ D R+L++RA+ Q + L ++P+ + + +A + Q+YTQS G RPFG+S LI
Sbjct: 77 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLI 136
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G++ +G+P L+Q++PSG Y+ WKA A G++ + FLEK Y +E++ E A I AI
Sbjct: 137 CGWN-EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY-NEDLELEDA-IHTAIL 193
Query: 121 ALLEVV--QSGQKNLEIAV 137
L E Q + N+E+ +
Sbjct: 194 TLKESFEGQMTEDNIEVGI 212
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 139 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 195
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 196 ALKSSLEEGEELKAPEIASITVG 218
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 83 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 142
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 143 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 199
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 200 ALKSSLEEGEELKAPEIASITVG 222
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 83 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 142
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 143 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 199
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 200 ALKSSLEEGEELKAPEIASITVG 222
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 139 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 195
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 196 ALKSSLEEGEELKAPEIASITVG 218
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 139 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 195
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 196 ALKSSLEEGEELKAPEIASITVG 218
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 73 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 132
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E EK + L I+
Sbjct: 133 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIK 189
Query: 121 ALLEVVQSGQ--KNLEIAVMRHG 141
AL ++ G+ K EIA + G
Sbjct: 190 ALKSSLEEGEELKAPEIASITVG 212
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 69 GLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 128
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 129 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALKT 186
Query: 122 LLEVVQSGQ---KNLEIAVMRHG 141
L + S LE A +R G
Sbjct: 187 LSKTTDSSALTYDRLEFATIRKG 209
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 79 GLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 138
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 139 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALKT 196
Query: 122 LLEVVQSGQ---KNLEIAVMRHG 141
L + S LE A +R G
Sbjct: 197 LSKTTDSSALTYDRLEFATIRKG 219
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 78 GLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 137
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 138 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALKT 195
Query: 122 LLEVVQSGQ---KNLEIAVMRHG 141
L + S LE A +R G
Sbjct: 196 LSKTTDSSALTYDRLEFATIRKG 218
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 79 GLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 138
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 139 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALKT 196
Query: 122 LLEVVQSGQ---KNLEIAVMRHG 141
L + S LE A +R G
Sbjct: 197 LSKTTDSSALTYDRLEFATIRKG 219
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 66 GLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYA 125
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 126 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALKT 183
Query: 122 LLEVVQSGQ---KNLEIAVMRHG 141
L + S LE A +R G
Sbjct: 184 LSKTTDSSALTYDRLEFATIRKG 206
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 6/148 (4%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G+T+DA +L N ++ Q + L ++P+ E + + +KQ YTQ G+RPFG+S L
Sbjct: 78 GITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYI 137
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LYQ++PSG Y WKA G ++ L++ YK EMT K+ + LAI+
Sbjct: 138 GWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTL-KSALALAIKV 196
Query: 122 L---LEVVQSGQKNLEIAVM--RHGKPV 144
L ++V + + +EIA + +GK V
Sbjct: 197 LNKTMDVSKLSAEKVEIATLTRENGKTV 224
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G+T+DA +L N ++ Q + L ++P+ E + + +KQ YTQ G+RPFG+S L
Sbjct: 78 GITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYI 137
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D +LYQ++PSG Y WKA G ++ L++ YK EMT K+ + LA++
Sbjct: 138 GWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTL-KSALALAVKV 196
Query: 122 L---LEVVQSGQKNLEIAVM--RHGKPV 144
L ++V + + +EIA + GK V
Sbjct: 197 LNKTMDVSKLSAEKVEIATLTRESGKTV 224
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 9/150 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADAR+L N + EC + + P+ + + I Q TQ GRRP+G+ LI
Sbjct: 76 GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIA 135
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTE-KATIKLAIR 120
G+D D P ++QT PS Y++ +A + G +++ R +LE+ + SE M +K +R
Sbjct: 136 GYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLER-HMSEFMECNLNELVKHGLR 193
Query: 121 ALLEVVQSGQ----KNLEIAVMRHGKPVEM 146
AL E + + Q KN+ I ++ GK +E
Sbjct: 194 ALRETLPAEQDLTTKNVSIGIV--GKDLEF 221
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 9/150 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GLTADAR+L N + EC + + P+ + + I Q TQ GRRP+G+ LI
Sbjct: 76 GLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIA 135
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTE-KATIKLAIR 120
G+D D P ++QT PS Y++ +A + G +++ R +LE+ + SE M +K +R
Sbjct: 136 GYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLER-HMSEFMECNLDELVKHGLR 193
Query: 121 ALLEVVQSGQ----KNLEIAVMRHGKPVEM 146
AL E + + Q KN+ I ++ GK +E
Sbjct: 194 ALRETLPAEQDLTTKNVSIGIV--GKDLEF 221
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 92/155 (59%), Gaps = 10/155 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG-----RRPFG 55
+GL ADA+ LI++A++E Q+H T + +T+E +T+ ++ L ++ + + RPFG
Sbjct: 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFG 138
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATI 115
++ L GG D G P+L+ +PSG + + A A G +++ + L++ Y + MT ++A I
Sbjct: 139 VALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-KSMTLKEA-I 195
Query: 116 KLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLS 148
K ++ L +V++ N+E+A ++ G+ M +
Sbjct: 196 KSSLIILKQVMEEKLNATNIELATVQPGQNFHMFT 230
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 92/155 (59%), Gaps = 10/155 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG-----RRPFG 55
+GL ADA+ LI++A++E Q+H T + +T+E +T+ ++ L ++ + + RPFG
Sbjct: 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFG 138
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATI 115
++ L GG D G P+L+ +PSG + + A A G +++ + L++ Y + MT ++A I
Sbjct: 139 VALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH-KSMTLKEA-I 195
Query: 116 KLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLS 148
K ++ L +V++ N+E+A ++ G+ M +
Sbjct: 196 KSSLIILKQVMEEKLNATNIELATVQPGQNFHMFT 230
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 7/147 (4%)
Query: 1 TGLTADARILINRA-QIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
+G+ D R+L++++ ++ S+K + + + +A + Q+ TQS G RPFG+S L
Sbjct: 57 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLL 116
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAI 119
I G D LYQ +PSG Y+ WKA A G+ + + FLEK + ++E+ E A I +A+
Sbjct: 117 IAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW-NDELELEDA-IHIAL 174
Query: 120 RALLEVVQSGQKN---LEIAVMRHGKP 143
L E V+ G+ N +E+A++ P
Sbjct: 175 LTLKESVE-GEFNGDTIELAIIGDENP 200
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 84/147 (57%), Gaps = 7/147 (4%)
Query: 1 TGLTADARILINRA-QIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
+G+ D R+L++++ ++ S+K + + + +A + Q+ TQS G RPFG+S L
Sbjct: 76 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLL 135
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAI 119
I G D LYQ +PSG Y+ WKA A G+ + + FLEK + ++E+ E A I +A+
Sbjct: 136 IAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW-NDELELEDA-IHIAL 193
Query: 120 RALLEVVQSGQKN---LEIAVMRHGKP 143
L E V+ G+ N +E+A++ P
Sbjct: 194 LTLKESVE-GEFNGDTIELAIIGDENP 219
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GLTADAR +I A+ +H L ++ + +E +T+ + L S RPFG++ LI
Sbjct: 79 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLAAAAAMS---RPFGVALLI 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKATIKLAI 119
G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A + L +
Sbjct: 136 AGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEAEL-LVL 192
Query: 120 RALLEVVQ 127
+ L +V++
Sbjct: 193 KILKQVME 200
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
TG+TAD+R + RA+ E + K + ++ + + IA + Q YTQ+ RP G ++
Sbjct: 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL 140
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + P++Y+ +P+G Y +KA A G FLEK K + T + T++ AI
Sbjct: 141 IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAIT 200
Query: 121 ALLEVVQSGQKNLEIAV 137
L V+ K EI V
Sbjct: 201 CLSTVLSIDFKPSEIEV 217
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
TG+TAD+R + RA+ E + K + ++ + + IA + Q YTQ+ RP G ++
Sbjct: 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL 140
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + P++Y+ +P+G Y +KA A G FLEK K + T + T++ AI
Sbjct: 141 IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAIT 200
Query: 121 ALLEVVQSGQKNLEIAV 137
L V+ K EI V
Sbjct: 201 CLSTVLSIDFKPSEIEV 217
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 75 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKF--YKSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK + E ++ +A + A
Sbjct: 135 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 193
Query: 119 IRALLEVVQSGQKNLEIAV 137
L + +K+ E+ +
Sbjct: 194 KIIYLAHEDNKEKDFELEI 212
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 73 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 132
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKF--YKSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK + E ++ +A + A
Sbjct: 133 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 191
Query: 119 IRALLEVVQSGQKNLEIAV 137
L + +K+ E+ +
Sbjct: 192 KIIYLAHEDNKEKDFELEI 210
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKF--YKSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK + E ++ +A + A
Sbjct: 139 GGVDKNGA-HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 197
Query: 119 IRALLEVVQSGQKNLEIAV 137
L + +K+ E+ +
Sbjct: 198 KIIYLAHEDNKEKDFELEI 216
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKF--YKSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK + E ++ +A + A
Sbjct: 139 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 197
Query: 119 IRALLEVVQSGQKNLEIAV 137
L + +K+ E+ +
Sbjct: 198 KIIYLAHEDNKEKDFELEI 216
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 78 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 137
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKF--YKSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK + E ++ +A + A
Sbjct: 138 GGVDKNGA-HLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 196
Query: 119 IRALLEVVQSGQKNLEIAV 137
L + +K+ E+ +
Sbjct: 197 KIIYLAHEDNKEKDFELEI 215
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 81 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 140
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKA 113
G++ LI G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A
Sbjct: 141 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEA 198
Query: 114 TIKLAIRALLEVVQ 127
+ L ++ L +V++
Sbjct: 199 EL-LVLKILKQVME 211
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 71 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 130
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKA 113
G++ LI G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A
Sbjct: 131 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEA 188
Query: 114 TIKLAIRALLEVVQ 127
+ L ++ L +V++
Sbjct: 189 EL-LVLKILKQVME 201
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 80 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 139
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKA 113
G++ LI G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A
Sbjct: 140 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEA 197
Query: 114 TIKLAIRALLEVVQ 127
+ L ++ L +V++
Sbjct: 198 EL-LVLKILKQVME 210
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 79 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 138
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKA 113
G++ LI G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A
Sbjct: 139 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEA 196
Query: 114 TIKLAIRALLEVVQ 127
+ L ++ L +V++
Sbjct: 197 EL-LVLKILKQVME 209
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 10/134 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 79 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 138
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVR-EFLEKFYKSEEMTTEKA 113
G++ LI G D D +L+ EPSG +Y + A A G ++ + E L +++ S +T ++A
Sbjct: 139 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS--LTLKEA 196
Query: 114 TIKLAIRALLEVVQ 127
+ L ++ L +V++
Sbjct: 197 EL-LVLKILKQVME 209
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 76 GLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSAGGRPYGVGLLII 135
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK----FYKSEEMTTEKATIKL 117
G+D G L + +PSG E A G ++ + +LE+ F K + E IK
Sbjct: 136 GYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDE--LIKA 192
Query: 118 AIRALLEVVQSGQ---KNLEIAVMRHGKP 143
+ A+ + ++ NL IA++ P
Sbjct: 193 GVEAISQSLRDESLTVDNLSIAIVGKDTP 221
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 75 GLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSAGGRPYGVGLLII 134
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK----FYKSEEMTTEKATIKL 117
G+D G L + +PSG E A G ++ + +LE+ F K + E IK
Sbjct: 135 GYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDE--LIKA 191
Query: 118 AIRALLEVVQSGQ---KNLEIAVMRHGKP 143
+ A+ + ++ NL IA++ P
Sbjct: 192 GVEAISQSLRDESLTVDNLSIAIVGKDTP 220
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 76 GLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLII 135
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK----FYKSEEMTTEKATIKL 117
G+D G L + +PSG E A G ++ + +LE+ F K + E IK
Sbjct: 136 GYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDE--LIKA 192
Query: 118 AIRALLEVVQSGQ---KNLEIAVMRHGKP 143
+ A+ + ++ NL IA++ P
Sbjct: 193 GVEAISQSLRDESLTVDNLSIAIVGKDTP 221
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 77 GLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLII 136
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK----FYKSEEMTTEKATIKL 117
G+D G L + +PSG E A G ++ + +LE+ F K + E IK
Sbjct: 137 GYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDE--LIKA 193
Query: 118 AIRALLEVVQSGQ---KNLEIAVMRHGKP 143
+ A+ + ++ NL IA++ P
Sbjct: 194 GVEAISQSLRDESLTVDNLSIAIVGKDTP 222
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 75 GLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLII 134
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK----FYKSEEMTTEKATIKL 117
G+D G L + +PSG E A G ++ + +LE+ F K + E IK
Sbjct: 135 GYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDE--LIKA 191
Query: 118 AIRALLEVVQSGQ---KNLEIAVMRHGKP 143
+ A+ + ++ NL IA++ P
Sbjct: 192 GVEAISQSLRDESLTVDNLSIAIVGKDTP 220
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL ADAR L + A+ E + + + L+++ +A YT + RPFG S ++
Sbjct: 79 AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFML 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLA 118
G + + +LY +PSG+ Y + A G++ + + +EK + +EMT ++A
Sbjct: 139 GSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL-QMKEMTCRDVVKEVA 195
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL ADAR L + A+ E + + + L+++ +A YT + RPFG S ++
Sbjct: 78 AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFML 137
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT 109
G + + +LY +PSG+ Y + A G++ + + +EK + +EMT
Sbjct: 138 GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL-QMKEMT 185
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 32 EYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRS 91
+ + + +A L Q YTQ RP G+ D + P +Y+T+P+G Y +KA ATG
Sbjct: 106 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPK 165
Query: 92 AKTVREFLEKFYKSEEMT-----TEKATIKLAIRALLEVV--QSGQKNLEIAVMRHGK 142
+ + LE +K ++ + + ++ AI +++ + + + +LE+ V K
Sbjct: 166 QQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK 223
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 32 EYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRS 91
+ + + +A L Q YTQ RP G+ D + P +Y+T+P+G Y +KA ATG
Sbjct: 115 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPK 174
Query: 92 AKTVREFLEKFYKSEEMT-----TEKATIKLAIRALLEVV--QSGQKNLEIAVMRHGK 142
+ + LE +K ++ + + ++ AI +++ + + + +LE+ V K
Sbjct: 175 QQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK 232
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 51 RRPFGISCLIGGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT 109
RRP+ ++ LIGG+D KP LYQ + G E A G S L+ Y+ +MT
Sbjct: 95 RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRP-DMT 153
Query: 110 TEKA--TIKLAIRAL 122
TE+ +KL ++ L
Sbjct: 154 TEEGLDLLKLCVQEL 168
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDP-VTLEYITRYIAGLKQKYTQSNGRR--PFGIS 57
G AD L+ R + + + D +++ R I L G+R P+ +
Sbjct: 74 NGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLY------GKRFFPYYVH 127
Query: 58 CLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK--FYKS--EEMTTEKA 113
+I G D DGK +Y +P G Y + A G +A + FL+ +K+ E T K
Sbjct: 128 TIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKV 187
Query: 114 TIKLAIRALLEVVQSGQKNLEIAVMRH---GKPVEMLSVAQ 151
L ++ EV++ + + A RH G +E+L V +
Sbjct: 188 KKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTK 228
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDP-VTLEYITRYIAGLKQKYTQSNGRR--PFGIS 57
G AD L+ R + + + D +++ R I L G+R P+ +
Sbjct: 55 NGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLY------GKRFFPYYVH 108
Query: 58 CLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK--FYKS--EEMTTEKA 113
+I G D DGK +Y +P G Y + A G +A + FL+ +K+ E T K
Sbjct: 109 TIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKV 168
Query: 114 TIKLAIRALLEVVQSGQKNLEIAVMRH---GKPVEMLSVAQ 151
L ++ EV++ + + A RH G +E+L V +
Sbjct: 169 KKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTK 209
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G+ AD + A + + H L+ + +TR L+Q + G G S ++G
Sbjct: 47 GVAADTEMTTRMAASKMELHALSTGREPRVATVTRI---LRQTLFRYQGH--VGASLVVG 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKA 113
G D +G P+LY+ P G Y A G LE ++ MT E A
Sbjct: 102 GVDLNG-PQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQP-NMTLEAA 151
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G DA+ L +IE +++ E T+ R IA L S P+ + LIG
Sbjct: 47 GSVGDAQFLARIIKIEANLYEIRRERKPTV----RAIATLTSNLLNSYRYFPYLVQLLIG 102
Query: 62 GFDYDGKPRLYQTEPSGIYYEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D +GK +Y +P G E K ATG + T LE + E E ++LA+R
Sbjct: 103 GIDSEGKS-IYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE--AVELAVR 159
Query: 121 AL 122
A+
Sbjct: 160 AI 161
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 39 AGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKA-NATGRSAKTVRE 97
A L S+ PF +IGG+D +L+ +P G E K ATG +
Sbjct: 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYG 140
Query: 98 FLEKFYKSEEMTTEKATIKLAIRAL 122
LE Y +M+ E+ IKLA+ AL
Sbjct: 141 VLEAGY-DRDMSVEEG-IKLALNAL 163
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 53 PFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK---FYKSEEMT 109
P+ + +IGG D +GK +Y +P G Y A G ++ ++ L+ F + +
Sbjct: 103 PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE 162
Query: 110 TEKATIKLAIRALLEVVQS 128
T+ A+R + +V S
Sbjct: 163 HVPLTLDRAMRLVKDVFIS 181
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 53 PFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEK 101
P+ + +IGG D +GK +Y +P G Y A G ++ ++ L+
Sbjct: 103 PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDN 151
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 23 LTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYE 82
+ +ED L+YI R+++ LKQ R + L+ F++ TE GI Y
Sbjct: 470 VALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSG----YTERFGIVYV 525
Query: 83 WKANATGRSAKTVREFLEKF 102
+ N R+ K +L++F
Sbjct: 526 DRENGCERTMKRSARWLQEF 545
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 23 LTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYE 82
+ +ED L+YI R+++ LKQ R + L+ F++ TE GI Y
Sbjct: 470 VALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSG----YTERFGIVYV 525
Query: 83 WKANATGRSAKTVREFLEKF 102
+ N R+ K +L++F
Sbjct: 526 DRENGCERTMKRSARWLQEF 545
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 23 LTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYE 82
+ +ED L+YI R+++ LKQ R + L+ F++ TE GI Y
Sbjct: 470 VALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSG----YTERFGIVYV 525
Query: 83 WKANATGRSAKTVREFLEKF 102
+ N R+ K +L++F
Sbjct: 526 DRENGCERTMKRSARWLQEF 545
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 51 RRPFG-ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT 109
R P + LI G DY+ LY+T PS E + + + E LE E MT
Sbjct: 469 REPIAAVRDLIHGMDYES--WLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMT 526
Query: 110 TEKATIKLAIRALLEVVQSGQKNLEIAVM 138
+ + +R ++E +S ++ ++ +M
Sbjct: 527 LTQVVTRFTLRDMMERGESEEELDQVQLM 555
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 19 QSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISC 58
Q+ L ED V +E I R ++ Y ++NG RP +SC
Sbjct: 286 QAQALVKEDKVVVEAIER-----RRAYVEANGIRPAMLSC 320
>pdb|2F84|A Chain A, Crystal Structure Of An Orotidine-5'-monophosphate
Decarboxylase Homolog From P.falciparum
pdb|2Q8L|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Plasmodium Falciparum
pdb|2ZA1|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase Complexed With Orotidine 5'-monophosphate
From P.falciparum
pdb|2ZA1|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase Complexed With Orotidine 5'-monophosphate
From P.falciparum
pdb|2ZA2|A Chain A, Crystal Structure Of The Apo-Form Of Orotidine-5'-
Monophosphate Decarboxylase From P.Falciparum
pdb|2ZA2|B Chain B, Crystal Structure Of The Apo-Form Of Orotidine-5'-
Monophosphate Decarboxylase From P.Falciparum
pdb|2ZA3|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase Complexed With Uridine 5'-Monophosphate
From P.Falciparum
pdb|2ZA3|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase Complexed With Uridine 5'-Monophosphate
From P.Falciparum
pdb|2ZCG|A Chain A, Structure And Inhibition Of Orotidine 5'-Phosphate
Decarboxylase From Plasmodium Falciparum
pdb|2ZCG|B Chain B, Structure And Inhibition Of Orotidine 5'-Phosphate
Decarboxylase From Plasmodium Falciparum
pdb|3VI2|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Omp
Decarboxylase In Complex With Inhibitor Hmoa
pdb|3VI2|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Omp
Decarboxylase In Complex With Inhibitor Hmoa
Length = 323
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
GI L FDY LY+ I + K N G + K R+F+ ++ KS+ T
Sbjct: 115 GIDVLKNVFDY-----LYELNIPTIL-DMKINDIGNTVKNYRKFIFEYLKSDSCT---VN 165
Query: 115 IKLAIRALLEVVQSGQKN 132
I + L ++ +KN
Sbjct: 166 IYMGTNMLKDICYDEEKN 183
>pdb|2Q8Z|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Complexed With 6-Amino-Ump
pdb|2Q8Z|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Complexed With 6-Amino-Ump
pdb|3BAR|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-phosphate Decarboxylase Covalently Modified By
6-azido-ump
pdb|3BAR|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-phosphate Decarboxylase Covalently Modified By
6-azido-ump
pdb|2QAF|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Covalently Modified By
6-Iodo-Ump
pdb|2QAF|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Phosphate Decarboxylase Covalently Modified By
6-Iodo-Ump
pdb|3BPW|A Chain A, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With Xmp
pdb|3BPW|B Chain B, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With Xmp
pdb|3MWA|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Covalently Modified By
2-Prime-Fluoro-6-Iodo-Ump
pdb|3MWA|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Covalently Modified By
2-Prime-Fluoro-6-Iodo-Ump
pdb|3N2M|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump
pdb|3N2M|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump
pdb|3N34|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump, Produced From 5-
Fluoro-6-Azido-Ump
pdb|3N34|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump, Produced From 5-
Fluoro-6-Azido-Ump
pdb|3N3M|A Chain A, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
6-Amino-Ump
pdb|3N3M|B Chain B, Crystal Structure Of Plasmodium Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
6-Amino-Ump
pdb|3S9Y|A Chain A, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|B Chain B, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|C Chain C, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
pdb|3S9Y|D Chain D, Crystal Structure Of P. Falciparum Orotidine
5'-Monophosphate Decarboxylase Complexed With
5-Fluoro-6-Amino-Ump In Space Group P21, Produced From
5-Fluoro-6-Azido-Ump
Length = 342
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
GI L FDY LY+ I + K N G + K R+F+ ++ KS+ T
Sbjct: 134 GIDVLKNVFDY-----LYELNIPTIL-DMKINDIGNTVKNYRKFIFEYLKSDSCT---VN 184
Query: 115 IKLAIRALLEVVQSGQKN 132
I + L ++ +KN
Sbjct: 185 IYMGTNMLKDICYDEEKN 202
>pdb|4EPS|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04982)
From Bacteroides Ovatus Atcc 8483 At 1.85 A Resolution
Length = 510
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 60 IGGFDYDGKPRLYQTEPSGI----YYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATI 115
G + GKP LY G+ YY +++ TG++ +F E+TTE++
Sbjct: 67 FNGSSWSGKPILYDDRLVGVNFYAYYPYQSEXTGKTDLIGDDFFAPLAAGWELTTEQSDQ 126
Query: 116 K 116
K
Sbjct: 127 K 127
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 82 EWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
EW N +A+ E +EK+ EE+T +A IK A+R
Sbjct: 216 EWHQNLIESAAEASEELMEKYLGGEELT--EAEIKGALR 252
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 78 GIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAV 137
IYYE AN+ +TV++ E F + ++ T + K +R E+ Q A+
Sbjct: 73 AIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMR---EMAQHASVPCINAL 129
Query: 138 MRHGKPVEMLS 148
G P++M+
Sbjct: 130 DDFGHPLQMVC 140
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 82 EWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
EW N +A+ E +EK+ EE+T +A IK A+R
Sbjct: 217 EWHQNLIESAAEASEELMEKYLGGEELT--EAEIKGALR 253
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATG 89
+SC GFD+D + +P G EW TG
Sbjct: 20 LSCSASGFDFDNAWMTWVRQPPGKGLEWVGRITG 53
>pdb|3UNB|M Chain M, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|AA Chain a, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|OO Chain o, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|3 Chain 3, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|M Chain M, Mouse Constitutive 20s Proteasome
pdb|3UNE|AA Chain a, Mouse Constitutive 20s Proteasome
pdb|3UNE|OO Chain o, Mouse Constitutive 20s Proteasome
pdb|3UNE|3 Chain 3, Mouse Constitutive 20s Proteasome
pdb|3UNF|M Chain M, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|AA Chain a, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|M Chain M, Mouse 20s Immunoproteasome
pdb|3UNH|AA Chain a, Mouse 20s Immunoproteasome
Length = 219
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 42 KQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSA----KTVRE 97
+ Y++ + P + +IGG+ DG+ L + G+ YE + ATG A +RE
Sbjct: 94 RAMYSRRSKMNPLWNTMVIGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLRE 152
Query: 98 FLEK 101
LEK
Sbjct: 153 VLEK 156
>pdb|1IRU|N Chain N, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|2 Chain 2, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 219
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 42 KQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSA----KTVRE 97
+ Y++ + P + +IGG+ DG+ L + G+ YE + ATG A +RE
Sbjct: 94 RAMYSRRSKMNPLWNTMVIGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLRE 152
Query: 98 FLEK 101
LEK
Sbjct: 153 VLEK 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,232,827
Number of Sequences: 62578
Number of extensions: 169576
Number of successful extensions: 605
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 79
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)