Query psy13966
Match_columns 174
No_of_seqs 108 out of 1116
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 16:09:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0183|consensus 100.0 9.3E-41 2E-45 253.2 14.7 174 1-174 75-248 (249)
2 cd03750 proteasome_alpha_type_ 100.0 1.6E-37 3.6E-42 245.1 20.4 153 1-156 72-226 (227)
3 PTZ00246 proteasome subunit al 100.0 2E-37 4.2E-42 248.3 20.6 161 1-163 77-245 (253)
4 PRK03996 proteasome subunit al 100.0 2E-36 4.4E-41 240.8 20.8 157 1-160 81-240 (241)
5 KOG0178|consensus 100.0 6.5E-37 1.4E-41 231.8 16.9 162 1-163 77-244 (249)
6 COG0638 PRE1 20S proteasome, a 100.0 4.8E-36 1E-40 237.9 20.3 156 1-161 76-234 (236)
7 KOG0181|consensus 100.0 6.8E-37 1.5E-41 229.2 14.3 155 1-159 77-233 (233)
8 TIGR03690 20S_bact_beta protea 100.0 1.4E-35 3.1E-40 232.9 19.4 157 1-161 48-216 (219)
9 KOG0176|consensus 100.0 8.6E-36 1.9E-40 223.8 16.5 156 1-159 79-241 (241)
10 cd03758 proteasome_beta_type_2 100.0 1.6E-35 3.6E-40 228.5 18.4 142 1-147 47-191 (193)
11 cd03755 proteasome_alpha_type_ 100.0 2.7E-35 5.9E-40 229.5 17.4 136 1-138 72-207 (207)
12 cd03760 proteasome_beta_type_4 100.0 7.9E-35 1.7E-39 225.2 17.6 143 1-148 48-196 (197)
13 cd03754 proteasome_alpha_type_ 100.0 8.7E-35 1.9E-39 227.9 17.5 138 1-138 74-215 (215)
14 TIGR03633 arc_protsome_A prote 100.0 1.1E-34 2.4E-39 228.5 17.8 148 1-151 74-224 (224)
15 PTZ00488 Proteasome subunit be 100.0 1.8E-34 3.9E-39 230.2 19.1 153 1-163 85-242 (247)
16 cd03751 proteasome_alpha_type_ 100.0 1.1E-34 2.3E-39 227.0 17.2 135 1-138 75-212 (212)
17 cd03752 proteasome_alpha_type_ 100.0 3.5E-34 7.6E-39 224.1 17.7 136 1-138 75-213 (213)
18 cd03761 proteasome_beta_type_5 100.0 5.3E-34 1.1E-38 219.2 18.3 139 1-147 46-187 (188)
19 TIGR03691 20S_bact_alpha prote 100.0 6.5E-34 1.4E-38 224.6 18.7 153 1-156 65-228 (228)
20 cd03749 proteasome_alpha_type_ 100.0 5.5E-34 1.2E-38 222.8 17.7 136 1-139 70-211 (211)
21 cd03759 proteasome_beta_type_3 100.0 9.3E-34 2E-38 219.0 17.8 137 1-143 49-189 (195)
22 KOG0182|consensus 100.0 2.9E-33 6.3E-38 212.1 17.3 161 1-161 81-244 (246)
23 cd03765 proteasome_beta_bacter 100.0 3.9E-33 8.4E-38 220.8 18.8 139 1-142 49-201 (236)
24 cd03756 proteasome_alpha_arche 100.0 4.9E-33 1.1E-37 217.3 18.0 136 1-139 73-210 (211)
25 cd03764 proteasome_beta_archea 100.0 1.3E-32 2.9E-37 211.2 18.7 140 1-148 46-188 (188)
26 TIGR03634 arc_protsome_B prote 100.0 1.5E-32 3.2E-37 210.4 18.1 135 1-142 47-184 (185)
27 cd03757 proteasome_beta_type_1 100.0 2.9E-32 6.2E-37 213.2 17.8 137 1-143 54-202 (212)
28 cd01911 proteasome_alpha prote 100.0 2.9E-32 6.4E-37 212.6 17.2 136 1-138 72-209 (209)
29 KOG0863|consensus 100.0 3.4E-32 7.4E-37 208.5 16.6 162 1-163 75-240 (264)
30 cd03763 proteasome_beta_type_7 100.0 6.2E-32 1.3E-36 207.8 17.8 140 1-149 46-188 (189)
31 cd03762 proteasome_beta_type_6 100.0 1.1E-31 2.3E-36 206.2 18.0 135 1-142 46-183 (188)
32 cd01912 proteasome_beta protea 100.0 2.9E-31 6.2E-36 203.6 18.2 139 1-146 46-187 (189)
33 cd03753 proteasome_alpha_type_ 100.0 1.6E-31 3.4E-36 209.1 17.0 135 1-138 72-213 (213)
34 KOG0184|consensus 100.0 4.6E-32 9.9E-37 206.8 12.8 158 1-161 79-240 (254)
35 PF00227 Proteasome: Proteasom 100.0 3.7E-31 8.1E-36 202.7 16.3 136 1-138 51-190 (190)
36 cd01906 proteasome_protease_Hs 100.0 2.5E-30 5.4E-35 196.8 17.0 134 1-138 46-182 (182)
37 KOG0177|consensus 99.9 4.3E-26 9.3E-31 170.3 12.9 143 1-148 47-192 (200)
38 KOG0179|consensus 99.9 1.2E-24 2.5E-29 165.0 14.7 140 1-144 75-226 (235)
39 KOG0175|consensus 99.9 3E-25 6.5E-30 172.7 11.5 154 1-162 117-273 (285)
40 KOG0174|consensus 99.9 3.2E-24 6.9E-29 161.0 10.4 152 1-159 65-220 (224)
41 cd01901 Ntn_hydrolase The Ntn 99.9 8.5E-22 1.8E-26 145.5 15.1 117 1-123 46-163 (164)
42 KOG0180|consensus 99.8 2.5E-20 5.5E-25 137.7 12.7 136 1-142 54-193 (204)
43 KOG0185|consensus 99.8 2.5E-20 5.5E-25 143.6 10.2 151 1-154 87-242 (256)
44 KOG0173|consensus 99.8 2.4E-19 5.1E-24 139.5 13.5 134 1-142 83-219 (271)
45 cd01913 protease_HslV Protease 99.8 3E-17 6.5E-22 123.9 13.4 116 1-136 47-169 (171)
46 PRK05456 ATP-dependent proteas 99.7 4.3E-17 9.3E-22 123.6 13.3 118 1-137 48-171 (172)
47 TIGR03692 ATP_dep_HslV ATP-dep 99.7 1.7E-16 3.8E-21 119.8 13.0 117 1-136 47-169 (171)
48 COG3484 Predicted proteasome-t 97.0 0.017 3.8E-07 44.7 10.6 137 1-141 50-201 (255)
49 COG5405 HslV ATP-dependent pro 95.9 0.19 4.1E-06 37.6 10.1 119 1-138 51-175 (178)
50 KOG3361|consensus 88.5 1.1 2.3E-05 32.6 4.5 78 72-160 71-148 (157)
51 PF09894 DUF2121: Uncharacteri 73.3 16 0.00035 28.2 6.3 47 93-141 131-180 (194)
52 PF03646 FlaG: FlaG protein; 66.0 15 0.00033 25.1 4.5 32 130-161 65-98 (107)
53 PF06057 VirJ: Bacterial virul 61.3 15 0.00032 28.5 4.0 33 28-64 44-76 (192)
54 PF07499 RuvA_C: RuvA, C-termi 59.7 6 0.00013 23.1 1.3 33 87-121 12-45 (47)
55 PF06018 CodY: CodY GAF-like d 56.8 86 0.0019 23.9 8.1 70 10-105 2-71 (177)
56 COG4079 Uncharacterized protei 55.3 37 0.0008 27.4 5.4 135 20-156 35-197 (293)
57 PRK08868 flagellar protein Fla 54.4 80 0.0017 23.3 6.7 31 130-160 99-131 (144)
58 PF11211 DUF2997: Protein of u 54.1 31 0.00068 20.4 3.8 32 72-103 3-34 (48)
59 PRK07738 flagellar protein Fla 52.1 80 0.0017 22.4 6.2 32 130-161 74-107 (117)
60 PRK08452 flagellar protein Fla 50.6 90 0.002 22.3 6.4 32 130-161 81-114 (124)
61 COG3193 GlcG Uncharacterized p 47.9 71 0.0015 23.5 5.5 34 109-143 8-41 (141)
62 PF00178 Ets: Ets-domain; Int 46.9 44 0.00095 22.2 4.1 29 135-163 21-50 (85)
63 KOG3652|consensus 46.3 84 0.0018 29.2 6.7 108 9-127 198-306 (1215)
64 TIGR00055 uppS undecaprenyl di 43.0 1E+02 0.0022 24.4 6.2 50 113-164 27-76 (226)
65 PRK09732 hypothetical protein; 40.4 1.1E+02 0.0025 22.0 5.7 40 109-149 7-49 (134)
66 PF04539 Sigma70_r3: Sigma-70 39.6 56 0.0012 20.5 3.7 32 11-42 3-34 (78)
67 smart00413 ETS erythroblast tr 39.5 48 0.001 22.3 3.3 28 134-161 20-48 (87)
68 PF00159 Hormone_3: Pancreatic 39.4 70 0.0015 17.8 3.5 24 26-49 9-32 (36)
69 PF01242 PTPS: 6-pyruvoyl tetr 39.0 1.1E+02 0.0024 21.2 5.5 46 1-46 43-98 (123)
70 smart00309 PAH Pancreatic horm 38.7 71 0.0015 17.7 3.4 22 26-47 9-30 (36)
71 cd04513 Glycosylasparaginase G 38.2 1.8E+02 0.004 23.6 7.1 58 85-144 187-248 (263)
72 KOG3806|consensus 37.5 90 0.0019 23.8 4.9 28 134-161 87-115 (177)
73 PF03928 DUF336: Domain of unk 37.5 1.1E+02 0.0025 21.5 5.3 34 109-143 3-36 (132)
74 PF05593 RHS_repeat: RHS Repea 37.4 54 0.0012 17.9 2.9 17 73-89 10-26 (38)
75 cd00126 PAH Pancreatic Hormone 36.9 77 0.0017 17.6 3.4 22 26-47 9-30 (36)
76 PHA02762 hypothetical protein; 36.8 54 0.0012 19.9 2.9 23 55-77 26-48 (62)
77 cd00475 CIS_IPPS Cis (Z)-Isopr 36.6 1.4E+02 0.0031 23.4 6.2 47 114-162 29-75 (221)
78 TIGR03544 DivI1A_domain DivIVA 35.2 33 0.00071 18.5 1.7 18 144-161 15-32 (34)
79 PHA03324 nuclear egress membra 32.8 47 0.001 26.3 2.8 42 24-65 48-89 (274)
80 PF13778 DUF4174: Domain of un 31.3 1.8E+02 0.0039 20.2 5.5 41 119-159 66-111 (118)
81 COG1334 FlaG Uncharacterized f 30.7 51 0.0011 23.5 2.5 31 130-160 77-109 (120)
82 PF06333 Med13_C: Mediator com 27.7 3.3E+02 0.0071 23.6 7.4 77 70-160 142-218 (424)
83 cd06404 PB1_aPKC PB1 domain is 26.0 2.1E+02 0.0044 19.1 6.0 49 110-161 21-70 (83)
84 COG4990 Uncharacterized protei 23.9 54 0.0012 25.2 1.7 34 58-104 151-184 (195)
85 KOG1220|consensus 23.4 1.1E+02 0.0023 27.9 3.6 70 87-159 255-352 (607)
86 PF05113 DUF693: Protein of un 22.7 2.4E+02 0.0053 23.2 5.3 57 57-118 98-157 (314)
87 PF14804 Jag_N: Jag N-terminus 22.6 1.4E+02 0.0031 17.8 3.1 27 110-140 6-32 (52)
88 PF01886 DUF61: Protein of unk 22.6 1.3E+02 0.0028 21.7 3.4 40 118-161 19-58 (132)
89 KOG0330|consensus 22.4 92 0.002 27.1 2.9 40 30-72 137-183 (476)
90 PF12385 Peptidase_C70: Papain 22.3 2.4E+02 0.0053 21.2 4.8 48 32-80 95-148 (166)
91 PRK04158 transcriptional repre 22.1 4.3E+02 0.0094 21.4 8.2 71 9-105 3-73 (256)
92 COG0771 MurD UDP-N-acetylmuram 21.9 1.2E+02 0.0025 26.7 3.6 65 56-122 346-411 (448)
93 PF01726 LexA_DNA_bind: LexA D 21.7 1.7E+02 0.0037 18.2 3.5 22 18-39 15-36 (65)
94 COG0822 IscU NifU homolog invo 21.6 3.4E+02 0.0073 20.0 6.1 90 70-162 44-144 (150)
95 COG3946 VirJ Type IV secretory 21.5 1.4E+02 0.0031 26.0 3.9 33 28-64 302-334 (456)
96 TIGR01764 excise DNA binding d 21.1 1.6E+02 0.0034 16.0 3.3 43 110-157 3-48 (49)
97 PF14639 YqgF: Holliday-juncti 20.7 1.3E+02 0.0029 22.1 3.2 72 24-122 69-140 (150)
98 TIGR00039 6PTHBS 6-pyruvoyl te 20.1 1.3E+02 0.0027 21.2 2.9 44 2-45 46-97 (124)
No 1
>KOG0183|consensus
Probab=100.00 E-value=9.3e-41 Score=253.17 Aligned_cols=174 Identities=75% Similarity=1.129 Sum_probs=165.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|-+|+.|+++.+.|++++.|+++|+.+.|.|||+++.||||++.+|+|||..|.|.||++||+|.|
T Consensus 75 aGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f 154 (249)
T KOG0183|consen 75 AGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIF 154 (249)
T ss_pred cCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhc
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~ 160 (174)
++|++.|+|.+++.++.+|||+|.+....+..++|++++++|.++...++++|+++++...+.+++++.++|+.++..++
T Consensus 155 ~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 155 SEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIE 234 (249)
T ss_pred hhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcCCCeeEEEEEecCCceeecCHHHHHHHHHHHH
Confidence 99999999999999999999999877445889999999999999999999999999999987799999999999999999
Q ss_pred cchHHHHHHhhhcC
Q psy13966 161 KEKEDEAEKKKQKK 174 (174)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (174)
++.+++++++++++
T Consensus 235 ~E~e~e~~~~~~~~ 248 (249)
T KOG0183|consen 235 QEEEAEAEKKKKKK 248 (249)
T ss_pred HHHHHHHHhhcccC
Confidence 99777777776653
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-37 Score=245.10 Aligned_cols=153 Identities=38% Similarity=0.649 Sum_probs=146.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++..|++.+|++++++.+++.|++++|.||++++.|||+|++||+|||++ +|+||++||+|++
T Consensus 72 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~ 150 (227)
T cd03750 72 SGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSY 150 (227)
T ss_pred eEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCE
Confidence 699999999999999999999999999999999999999999999999999999999999999966 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCCeEEcCHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~~~~l~~~ei~~~~ 156 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.++ .+++++|+++++++++++++++||++++
T Consensus 151 ~~~~~~a~G~g~~~~~~~Le~~~~~~m--s~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 151 FTWKATAIGKNYSNAKTFLEKRYNEDL--ELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred EeeeEEEECCCCHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999998 9999999999999988875 4789999999997669999999999876
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2e-37 Score=248.29 Aligned_cols=161 Identities=37% Similarity=0.597 Sum_probs=152.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++..|++.++.++++..+++.++..+|.|++++++|||+|++||+|||++++|+||++||+|++
T Consensus 77 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~ 156 (253)
T PTZ00246 77 AGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNY 156 (253)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC-----CeEEcCHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK-----PVEMLSVAQI 152 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~-----~~~~l~~~ei 152 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+..++ ++.++|+++++++ .|++++++||
T Consensus 157 ~~~~~~a~G~gs~~~~~~Le~~~~~~m--s~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei 234 (253)
T PTZ00246 157 SGWKATAIGQNNQTAQSILKQEWKEDL--TLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEI 234 (253)
T ss_pred ecceEEEECCCcHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHH
Confidence 999999999999999999999999998 99999999999999999864 6899999999874 3899999999
Q ss_pred HHHHHHhccch
Q psy13966 153 EEYVNEIEKEK 163 (174)
Q Consensus 153 ~~~~~~~~~~~ 163 (174)
++++.++..+.
T Consensus 235 ~~~l~~~~~~~ 245 (253)
T PTZ00246 235 AELLKKVTQEY 245 (253)
T ss_pred HHHHHHHhhhh
Confidence 99999996654
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2e-36 Score=240.79 Aligned_cols=157 Identities=44% Similarity=0.711 Sum_probs=149.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.++++++.++..|++.++++++++.++++|++.+|.|+++++.|||+|++||||||.+ +|+||.+||+|++
T Consensus 81 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~ 159 (241)
T PRK03996 81 AGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAY 159 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCe
Confidence 799999999999999999999999999999999999999999999999999999999999999965 4999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCC-eEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKP-VEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~-~~~l~~~ei~~~~~ 157 (174)
.+++++|+|.++..++++|++.|+++| +++||++++++||..+.++ .++.++|++++++++ |+.++++||+.++.
T Consensus 160 ~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~ 237 (241)
T PRK03996 160 LEYKATAIGAGRDTVMEFLEKNYKEDL--SLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLE 237 (241)
T ss_pred ecceEEEECCCcHHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999875 378999999999864 99999999999998
Q ss_pred Hhc
Q psy13966 158 EIE 160 (174)
Q Consensus 158 ~~~ 160 (174)
++.
T Consensus 238 ~~~ 240 (241)
T PRK03996 238 KLL 240 (241)
T ss_pred Hhh
Confidence 764
No 5
>KOG0178|consensus
Probab=100.00 E-value=6.5e-37 Score=231.76 Aligned_cols=162 Identities=31% Similarity=0.539 Sum_probs=152.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|+++|+..|++++|..+++|.+.||++||++.|++.++++.|.||||+|.||||||++.+|||..-|++||+.||||++
T Consensus 77 aGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny 156 (249)
T KOG0178|consen 77 AGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNY 156 (249)
T ss_pred ecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC---eEEcCHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP---VEMLSVAQIEE 154 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~---~~~l~~~ei~~ 154 (174)
..|++.|+|.++..|++.|.+.|+++. .+++||..+|++.|.+..+.+ ...+||+.++++.+ ++++.++||..
T Consensus 157 ~gWka~ciG~N~~Aa~s~Lkqdykdd~-~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~k 235 (249)
T KOG0178|consen 157 GGWKATCIGANSGAAQSMLKQDYKDDE-NDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLK 235 (249)
T ss_pred cccceeeeccchHHHHHHHHhhhcccc-ccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHH
Confidence 999999999999999999999999886 379999999999999999864 68999999998743 78999999999
Q ss_pred HHHHhccch
Q psy13966 155 YVNEIEKEK 163 (174)
Q Consensus 155 ~~~~~~~~~ 163 (174)
++.++..+.
T Consensus 236 ll~k~~~~~ 244 (249)
T KOG0178|consen 236 LLEKYHETQ 244 (249)
T ss_pred HHHHhhhhh
Confidence 999997644
No 6
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-36 Score=237.93 Aligned_cols=156 Identities=35% Similarity=0.633 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++..|++.++++|+++.+++.+++++|.|+++ .|||+|++||+|+|+ ++|+||++||+|++
T Consensus 76 sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~ 152 (236)
T COG0638 76 AGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSY 152 (236)
T ss_pred ccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCce
Confidence 799999999999999999999999999999999999999999999987 899999999999998 77999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++||+.|+++| +++||++++++||+.+.++| +++++|.+++++.+++.++++++..++.
T Consensus 153 ~~~~~~a~Gsgs~~a~~~Le~~y~~~m--~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~ 230 (236)
T COG0638 153 NEYKATAIGSGSQFAYGFLEKEYREDL--SLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLD 230 (236)
T ss_pred eecCEEEEcCCcHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999965 5788999999966699999999999998
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
.+..
T Consensus 231 ~~~~ 234 (236)
T COG0638 231 DLSE 234 (236)
T ss_pred HHhh
Confidence 8754
No 7
>KOG0181|consensus
Probab=100.00 E-value=6.8e-37 Score=229.22 Aligned_cols=155 Identities=35% Similarity=0.602 Sum_probs=147.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+-+|++.+++..|..+.+|...|+++||+..|+..++..+|+|||+++.||||+++++||||.. +|.||++||||++
T Consensus 77 SGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~-~p~LyQvdPSGsy 155 (233)
T KOG0181|consen 77 SGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPLLYQVDPSGSY 155 (233)
T ss_pred ecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC-ceeEEEECCccce
Confidence 799999999999999999999999999999999999999999999999999999999999999965 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCCeEEcCHHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNE 158 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~~~~l~~~ei~~~~~~ 158 (174)
..|+++|+|.+...++++||++|++++ .++++|..|+-.|++..+- ..++|||+++..++ |+++.+.||+..|..
T Consensus 156 f~wkatA~Gkn~v~aktFlEkR~~edl--eldd~ihtailtlkE~fege~~~~nieigv~~~~~-F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 156 FAWKATAMGKNYVNAKTFLEKRYNEDL--ELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG-FRRLTPAEIEDYLAS 232 (233)
T ss_pred eehhhhhhccCcchHHHHHHHHhcccc--ccchHHHHHHHHHHHHhccccccCceEEEEecCCc-eeecCHHHHHHHHhc
Confidence 999999999999999999999999998 9999999999999999874 47899999999765 999999999999876
Q ss_pred h
Q psy13966 159 I 159 (174)
Q Consensus 159 ~ 159 (174)
+
T Consensus 233 l 233 (233)
T KOG0181|consen 233 L 233 (233)
T ss_pred C
Confidence 4
No 8
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.4e-35 Score=232.90 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=144.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYD-GKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~-g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|++++|.++..|++.++++|+++.+|+.|++++|.++ .+.+|||+|++||||||++ ++|+||++||+|+
T Consensus 48 sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~ 126 (219)
T TIGR03690 48 AGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGG 126 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999887 4568999999999999964 6799999999995
Q ss_pred -eeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CC--c-----EEEEEEEcCCCeEEcC
Q psy13966 80 -YYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QK--N-----LEIAVMRHGKPVEMLS 148 (174)
Q Consensus 80 -~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~--~-----iei~ii~~~~~~~~l~ 148 (174)
+..++++|+|+|+..++++||+.|+++| |.+||++++++||..+.+++ ++ . ++|++++++| |++++
T Consensus 127 ~~~~~~~~a~G~g~~~a~~~Le~~~~~~m--s~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~ 203 (219)
T TIGR03690 127 RYEERGYHAVGSGSVFAKGALKKLYSPDL--DEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVP 203 (219)
T ss_pred eeecCCeEEEeccHHHHHHHHHhcCCCCc--CHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcC
Confidence 7777999999999999999999999998 99999999999999999865 33 3 3999998776 99999
Q ss_pred HHHHHHHHHHhcc
Q psy13966 149 VAQIEEYVNEIEK 161 (174)
Q Consensus 149 ~~ei~~~~~~~~~ 161 (174)
++||+.++.++..
T Consensus 204 ~~ei~~~~~~~~~ 216 (219)
T TIGR03690 204 ESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988743
No 9
>KOG0176|consensus
Probab=100.00 E-value=8.6e-36 Score=223.79 Aligned_cols=156 Identities=31% Similarity=0.601 Sum_probs=145.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcceeeeeEEEEeCCCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG-----RRPFGISCLIGGFDYDGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~-----~RP~gv~~il~G~D~~g~~~Ly~vd 75 (174)
||+.+|+++|++++|.+|++|++.||++|+++.+.+.++++...|-.... .|||||++|+||+|++| |+||+.|
T Consensus 79 SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~g-pqL~h~d 157 (241)
T KOG0176|consen 79 SGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETG-PQLYHLD 157 (241)
T ss_pred cccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCC-ceEEEeC
Confidence 79999999999999999999999999999999999999999877754322 49999999999999665 9999999
Q ss_pred CCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCCeEEcCHHHHH
Q psy13966 76 PSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIE 153 (174)
Q Consensus 76 ~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~~~~l~~~ei~ 153 (174)
|||++.+|++-|||+|+.-+.+.|++.|++++ +++|++.+++..|+.+++. +.++++++++++++.|++++++|++
T Consensus 158 PSGtf~~~~AKAIGSgsEga~~~L~~e~~~~l--tL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~ 235 (241)
T KOG0176|consen 158 PSGTFIRYKAKAIGSGSEGAESSLQEEYHKDL--TLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVE 235 (241)
T ss_pred CCCceEEecceeccccchHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHH
Confidence 99999999999999999999999999999999 9999999999999999874 6889999999999899999999999
Q ss_pred HHHHHh
Q psy13966 154 EYVNEI 159 (174)
Q Consensus 154 ~~~~~~ 159 (174)
..+.++
T Consensus 236 ~~i~~~ 241 (241)
T KOG0176|consen 236 QVIKRL 241 (241)
T ss_pred HHHhcC
Confidence 987653
No 10
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-35 Score=228.45 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=133.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++..|++.++++++++.++++|++++|.|+++. |||+|++||+|||++++|+||++||+|++
T Consensus 47 sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~ 124 (193)
T cd03758 47 SGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTL 124 (193)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcce
Confidence 7999999999999999999999999999999999999999999887653 89999999999997677999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEc
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEML 147 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l 147 (174)
.+++++|+|+|+..++++||+.|+++| |.+||++++.+|+..+.+++ +++++|++++++| ++++
T Consensus 125 ~~~~~~a~G~gs~~~~~~Le~~~~~~m--s~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 125 VKVPYAAHGYGAYFCLSILDRYYKPDM--TVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred EECCeeEEeecHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 999999999999999999999999998 99999999999999999864 7899999999997 6543
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-35 Score=229.48 Aligned_cols=136 Identities=77% Similarity=1.165 Sum_probs=131.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.+++|.++..|++.++++|+++.+++.|++++|.||++++.|||+|++||+|||++++|+||++||+|++
T Consensus 72 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~ 151 (207)
T cd03755 72 AGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTY 151 (207)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCE
Confidence 79999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii 138 (174)
.+++++|+|+|+..++++||+.|+++| +.+||++++++||..+.+.++++|||+++
T Consensus 152 ~~~~~~a~G~gs~~~~~~Le~~~~~~m--s~eeai~l~~~~l~~~~~~~~~~~e~~~~ 207 (207)
T cd03755 152 SAWKANAIGRNSKTVREFLEKNYKEEM--TRDDTIKLAIKALLEVVQSGSKNIELAVM 207 (207)
T ss_pred EcceEEEECCCCHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 999999999999999999999999999 99999999999999999977899999875
No 12
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-35 Score=225.23 Aligned_cols=143 Identities=22% Similarity=0.238 Sum_probs=132.9
Q ss_pred CCchHHHHHHHHHHHHHHH-HhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQ-SHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.+++++|.++. .+++.++.+|+++.+|++|++++ |++++++|||+|++||||||++++|+||++||+|+
T Consensus 48 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~ 125 (197)
T cd03760 48 SGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGT 125 (197)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCcc
Confidence 7999999999999999987 56788999999999999999985 88888999999999999999767799999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhccc--ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcC
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFYKS--EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLS 148 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~~~--~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~ 148 (174)
+.+++++|+|+|+..++++||+.|++ +| |++||++++.+||..+.+++ ++.++|++|+++| +++-.
T Consensus 126 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~~m--s~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~~ 196 (197)
T cd03760 126 AYEDPHVATGFGAYLALPLLREAWEKKPDL--TEEEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEIEG 196 (197)
T ss_pred EEECCEeEEccHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEeCC
Confidence 99999999999999999999999999 88 99999999999999999864 7899999999987 66543
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-35 Score=227.89 Aligned_cols=138 Identities=31% Similarity=0.516 Sum_probs=131.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|.++..|+++++++|+++.+|+.|++++|.||++++.|||+|++||+|||++++|+||++||+|++
T Consensus 74 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~ 153 (215)
T cd03754 74 TGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYF 153 (215)
T ss_pred EechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccE
Confidence 79999999999999999999999999999999999999999999999999999999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccccccc--CHHHHHHHHHHHHHHHhhcC--CCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMT--TEKATIKLAIRALLEVVQSG--QKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~--s~~eai~l~~~~l~~~~~~~--~~~iei~ii 138 (174)
.+++++|+|+|+..++++||+.|++++.+ |++|+++++++||..+.+++ ++.+||+|+
T Consensus 154 ~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 154 AGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999997545 99999999999999998864 689999875
No 14
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-34 Score=228.54 Aligned_cols=148 Identities=44% Similarity=0.727 Sum_probs=140.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++..|++.++++++++.+++.|++++|.|+++++.|||+|++||+|||+ ++|+||.+||+|++
T Consensus 74 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~ 152 (224)
T TIGR03633 74 SGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAL 152 (224)
T ss_pred eecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999994 56999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCC-eEEcCHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKP-VEMLSVAQ 151 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~-~~~l~~~e 151 (174)
.+++++|+|+++..++++|++.|+++| +++||++++++||..+.+. .++.++|++++++|+ |+.++++|
T Consensus 153 ~~~~~~a~G~g~~~~~~~L~~~~~~~~--~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 153 LEYKATAIGAGRQAVTEFLEKEYREDL--SLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred ecceEEEECCCCHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999999999999998 9999999999999998873 378999999999866 89888765
No 15
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.8e-34 Score=230.19 Aligned_cols=153 Identities=17% Similarity=0.285 Sum_probs=141.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceee--eeEEEEeCCCCceEEEeCCCC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGIS--CLIGGFDYDGKPRLYQTEPSG 78 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~--~il~G~D~~g~~~Ly~vd~~G 78 (174)
||+.+|++.|++++|.++..|++++|++|+++.+|++|++++|.+ |||+++ +||||||++| |+||++||+|
T Consensus 85 sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~g-p~Ly~vDp~G 157 (247)
T PTZ00488 85 AGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNY------KGMGLSMGTMICGWDKKG-PGLFYVDNDG 157 (247)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCC-CEEEEEcCCc
Confidence 799999999999999999999999999999999999999998644 565555 8999999665 9999999999
Q ss_pred ceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHH
Q psy13966 79 IYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEY 155 (174)
Q Consensus 79 ~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~ 155 (174)
++.+++++|+|+|+..++++||+.|+++| |.+||++++++||..+.+++ +++++|++|+++| ++.++++||+.+
T Consensus 158 s~~~~~~~a~G~gs~~~~~~Le~~~k~dm--s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~ei~~~ 234 (247)
T PTZ00488 158 TRLHGNMFSCGSGSTYAYGVLDAGFKWDL--NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISADDCFDL 234 (247)
T ss_pred ceeecCCEEEccCHHHHHHHHHhcCcCCC--CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999964 7899999999987 999999999999
Q ss_pred HHHhccch
Q psy13966 156 VNEIEKEK 163 (174)
Q Consensus 156 ~~~~~~~~ 163 (174)
++++++..
T Consensus 235 l~~~~~~~ 242 (247)
T PTZ00488 235 HQKYAAEK 242 (247)
T ss_pred HHHHhhhc
Confidence 99986543
No 16
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-34 Score=226.96 Aligned_cols=135 Identities=33% Similarity=0.505 Sum_probs=128.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+++|++.+++++|.++..|++.++++++++.+++.|++++|.||+++++|||+|++||+|||++ +|+||++||+|++
T Consensus 75 sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~ 153 (212)
T cd03751 75 AGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVS 153 (212)
T ss_pred EEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCE
Confidence 699999999999999999999999999999999999999999999999999999999999999965 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc---CCCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS---GQKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~---~~~~iei~ii 138 (174)
.+++++|+|+|+..++++||+.|+++| |++||+++++++|+.+.+. +..+|||+++
T Consensus 154 ~~~~~~a~G~g~~~a~~~Lek~~~~dm--s~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 154 YGYFGCAIGKGKQAAKTELEKLKFSEL--TCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EeeEEEEECCCCHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999 9999999999999999983 4689999874
No 17
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-34 Score=224.11 Aligned_cols=136 Identities=36% Similarity=0.620 Sum_probs=130.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|.++..|++.++++|+++.+++.|+.++|.||++++.|||+|++||+|||++.+|+||.+||+|++
T Consensus 75 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~ 154 (213)
T cd03752 75 AGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNY 154 (213)
T ss_pred ecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999997666999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii 138 (174)
.+++++|+|+++..++++||+.|+++| +++||++++++||..+.+++ +.+++|+++
T Consensus 155 ~~~~~~a~G~gs~~~~~~Le~~y~~~m--s~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 155 SGWKATAIGNNNQAAQSLLKQDYKDDM--TLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred eeeeEEEECCCcHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999 99999999999999999864 678999874
No 18
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-34 Score=219.18 Aligned_cols=139 Identities=17% Similarity=0.277 Sum_probs=130.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++.+|++.++++|+++.+|++|++++|.|++ +||+|++||||||++ +|+||++||+|++
T Consensus 46 sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~----~~~~v~~li~G~D~~-g~~L~~~dp~G~~ 120 (188)
T cd03761 46 AGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKG----MGLSMGTMICGWDKT-GPGLYYVDSDGTR 120 (188)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC----CCeEEEEEEEEEeCC-CCEEEEEcCCceE
Confidence 79999999999999999999999999999999999999999998864 589999999999964 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEc
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEML 147 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l 147 (174)
.+++++|+|+|+..++++||+.|+++| |.+||++++.+||..+.+++ +++++|++|+++| ++++
T Consensus 121 ~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 121 LKGDLFSVGSGSTYAYGVLDSGYRYDL--SVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred EEcCeEEEcccHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 999999999999999999999999998 99999999999999999864 7899999999987 6554
No 19
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=6.5e-34 Score=224.56 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcC-CCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCceEEEeCCCC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVE-DPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY-DGKPRLYQTEPSG 78 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~-~g~~~Ly~vd~~G 78 (174)
||+.+|++.|+++++.++..|++.++ .+++++.+|+.+++.++.++ +++.|||+|++||+|||+ +.+|+||++||+|
T Consensus 65 sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG 143 (228)
T TIGR03691 65 VGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDG 143 (228)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCC
Confidence 79999999999999999999999998 78999999988888887776 678899999999999985 4569999999999
Q ss_pred ceeeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhh-----cCCCcEEEEEEEcCC---CeEEcCH
Q psy13966 79 IYYEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQ-----SGQKNLEIAVMRHGK---PVEMLSV 149 (174)
Q Consensus 79 ~~~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~-----~~~~~iei~ii~~~~---~~~~l~~ 149 (174)
++.+++ ++|+|+|+..++++||+.|+++| +++||++++++||..+.+ .++.+|||+++++++ .|++|++
T Consensus 144 ~~~~~~~~~aiG~gs~~a~~~Lek~y~~~m--s~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~ 221 (228)
T TIGR03691 144 SIVDERGFVVMGGTTEPIATALKESYRDGL--SLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITG 221 (228)
T ss_pred CceeccceEEECCChHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCH
Confidence 999976 89999999999999999999998 999999999999999964 357899999999753 4999999
Q ss_pred HHHHHHH
Q psy13966 150 AQIEEYV 156 (174)
Q Consensus 150 ~ei~~~~ 156 (174)
+||+.++
T Consensus 222 ~ei~~~l 228 (228)
T TIGR03691 222 EALERLL 228 (228)
T ss_pred HHHHhhC
Confidence 9998764
No 20
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.5e-34 Score=222.75 Aligned_cols=136 Identities=38% Similarity=0.659 Sum_probs=129.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|.++..|+++++++|+++.+|+.+++++|.||++++.|||+|++||+|||++| |+||++||+|++
T Consensus 70 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~g-p~Ly~~Dp~G~~ 148 (211)
T cd03749 70 AGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESG-PHLFQTCPSGNY 148 (211)
T ss_pred EeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCC-CeEEEECCCcCE
Confidence 7999999999999999999999999999999999999999999999999999999999999999654 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcc--cccccCHHHHHHHHHHHHHHHhhc----CCCcEEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYK--SEEMTTEKATIKLAIRALLEVVQS----GQKNLEIAVMR 139 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~--~~~~~s~~eai~l~~~~l~~~~~~----~~~~iei~ii~ 139 (174)
.+++++|+|+++..++++||+.|+ ++| +++|++++++++|..++++ .+++|||++++
T Consensus 149 ~~~~~~a~G~g~~~a~~~Le~~~~~~~~m--s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 149 FEYKATSIGARSQSARTYLERHFEEFEDC--SLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred eeeeEEEECCCcHHHHHHHHHhhccccCC--CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999999998 577 9999999999999999874 35899999874
No 21
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.3e-34 Score=218.96 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|.++..|++.++.+|+++.+|++|++++ |++ +.|||+|++||||||++++|+||++||+|++
T Consensus 49 sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~l--y~~--r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~ 124 (195)
T cd03759 49 AGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLL--YEK--RFGPYFVEPVVAGLDPDGKPFICTMDLIGCP 124 (195)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HHh--cCCCceEEEEEEEEcCCCCEEEEEEcCCCcc
Confidence 799999999999999999999999999999999999999998 555 3689999999999998888999999999999
Q ss_pred eeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC
Q psy13966 81 YEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP 143 (174)
Q Consensus 81 ~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~ 143 (174)
..++ ++|+|+|+..++++||+.|+|+| |.+||++++++||..+.+++ +++++|++|+++|.
T Consensus 125 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~ 189 (195)
T cd03759 125 SIPSDFVVSGTASEQLYGMCESLWRPDM--EPDELFETISQALLSAVDRDALSGWGAVVYIITKDKV 189 (195)
T ss_pred cccCCEEEEcccHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcE
Confidence 8887 99999999999999999999998 99999999999999999864 78999999999873
No 22
>KOG0182|consensus
Probab=100.00 E-value=2.9e-33 Score=212.09 Aligned_cols=161 Identities=32% Similarity=0.517 Sum_probs=153.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|+.+|++..+.++|.++.+++++||.+||++.||+.++++.|.|||+.-+||+||.+++.|+|++.||.+|.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcCCC-eEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHGKP-VEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~~~-~~~l~~~ei~~~~~ 157 (174)
..+++++.|-....+.++|||+++++..+|.+|++++++.||..++..| ...+||++++++.+ |+.|+.+||+..|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 9999999999999999999999999865589999999999999999865 57999999999866 99999999999999
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
.|.+
T Consensus 241 ~IAE 244 (246)
T KOG0182|consen 241 AIAE 244 (246)
T ss_pred Hhhh
Confidence 9854
No 23
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-33 Score=220.76 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=128.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCC-CCCHHHHHHHHHHHHH-HhhhcCC-----CCcceeeeeEEEEeCCCCceEEE
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVED-PVTLEYITRYIAGLKQ-KYTQSNG-----RRPFGISCLIGGFDYDGKPRLYQ 73 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~~~la~~ls~~~~-~~t~~~~-----~RP~gv~~il~G~D~~g~~~Ly~ 73 (174)
||+.+|++.|++++|.++..|++.+|+ +++++.+|+.++++++ .++|+.+ .|||+|++||+|||+++||+||+
T Consensus 49 sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~ 128 (236)
T cd03765 49 AGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFL 128 (236)
T ss_pred CCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEE
Confidence 799999999999999999999999999 8999999999999864 5667665 48999999999999666699999
Q ss_pred eCCCCceeeee----eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 74 TEPSGIYYEWK----ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 74 vd~~G~~~~~~----~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
+||+|++.+++ ++|+|. +..++++||+.|+++| |++||++++++||..+++++ +.+|+|.+|+++|
T Consensus 129 idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~m--s~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G 201 (236)
T cd03765 129 IYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDT--SLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS 201 (236)
T ss_pred ECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC
Confidence 99999999995 479996 7999999999999999 99999999999999999964 7899999999996
No 24
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-33 Score=217.31 Aligned_cols=136 Identities=46% Similarity=0.787 Sum_probs=130.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++..|+++++++++++.+++.|+.++|.|+++++.|||+|++||+|||+. +|+||.+||+|++
T Consensus 73 sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~-~~~ly~vd~~G~~ 151 (211)
T cd03756 73 SGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAY 151 (211)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC-CCEEEEECCCCCe
Confidence 799999999999999999999999999999999999999999999999999999999999999965 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMR 139 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~ 139 (174)
.+++++|+|+++..++++|++.|+|+| +++||++++++||..+.+++ +++++|++++
T Consensus 152 ~~~~~~a~G~g~~~~~~~Le~~~~~~m--~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 152 NEYKATAIGSGRQAVTEFLEKEYKEDM--SLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred eeeEEEEECCCCHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999999999 99999999999999998864 7899999986
No 25
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-32 Score=211.16 Aligned_cols=140 Identities=26% Similarity=0.388 Sum_probs=131.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|++.++++++++.+++++++++|.+ ++|||+|++||||||+ ++|+||.+||+|++
T Consensus 46 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~ 120 (188)
T cd03764 46 AGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSI 120 (188)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCE
Confidence 799999999999999999999999999999999999999999764 5799999999999996 56999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLS 148 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~ 148 (174)
.+++++|+|+|+..++++|++.|+++| +++|+++++.+||..+.+++ +++++|++++++| ++++.
T Consensus 121 ~~~~~~a~G~g~~~~~~~L~~~~~~~~--~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 121 IEDKYTATGSGSPYAYGVLEDEYKEDM--TVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred EEcCEEEEcCcHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeCC
Confidence 999999999999999999999999998 99999999999999999864 7899999999987 88763
No 26
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-32 Score=210.41 Aligned_cols=135 Identities=24% Similarity=0.422 Sum_probs=128.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.+.++++.++..|++.++.+++++.++++|++++|.+ ++|||+|++||+|||++| |+||.+||+|++
T Consensus 47 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g-~~Ly~~d~~G~~ 121 (185)
T TIGR03634 47 AGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN----RFFPFIVQLLVGGVDEEG-PHLYSLDPAGGI 121 (185)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCeEEEEEEEEEeCCC-CEEEEECCCCCe
Confidence 799999999999999999999999999999999999999999765 689999999999999765 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
.+++++|+|+++..++++|++.|+++| |++||++++.+||..+.+++ +++++|++++++|
T Consensus 122 ~~~~~~a~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 122 IEDDYTATGSGSPVAYGVLEDEYREDM--SVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred EECCEEEEcCcHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999999999999999999998 99999999999999999864 7899999999987
No 27
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-32 Score=213.23 Aligned_cols=137 Identities=19% Similarity=0.326 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+++++|.++..|++.+|++|+++.++++|++++ |++ +.|||+|++||||||++++|+||++||+|++
T Consensus 54 sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~l--y~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~ 129 (212)
T cd03757 54 SGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTIL--YSR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSY 129 (212)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHH--Hhh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCe
Confidence 799999999999999999999999999999999999999998 443 3579999999999998888999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcc---------cccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYK---------SEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP 143 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~---------~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~ 143 (174)
.+++++|+|+|+..++++||+.|+ ++| |++||++++.+||..+.+++ +++++|++|+++|.
T Consensus 130 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~m--s~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~ 202 (212)
T cd03757 130 ERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPL--SLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGI 202 (212)
T ss_pred eecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCC--CHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCE
Confidence 999999999999999999999985 778 99999999999999999864 78999999999973
No 28
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.9e-32 Score=212.59 Aligned_cols=136 Identities=50% Similarity=0.835 Sum_probs=130.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++..|++.+|++++++.+|+++++++|.|+++++.|||+|++||+|||++++|+||.+||+|++
T Consensus 72 sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~ 151 (209)
T cd01911 72 AGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTY 151 (209)
T ss_pred ccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii 138 (174)
.+++++|+|+++..++++|++.|+|+| +.+||++++.+||..+.+++ ++.++|+++
T Consensus 152 ~~~~~~a~G~g~~~~~~~L~~~~~~~m--s~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 152 FGYKATAIGKGSQEAKTFLEKRYKKDL--TLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred eeeeEEEeCCCcHHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 999999999999999999999999999 99999999999999999875 678888874
No 29
>KOG0863|consensus
Probab=100.00 E-value=3.4e-32 Score=208.50 Aligned_cols=162 Identities=31% Similarity=0.537 Sum_probs=150.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|+.+|++.|++++|.+|..+++.|++++|+..|...|.+.+|..||+.+.|||||+++++|||+.| |+||.++|+|++
T Consensus 75 AGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v 153 (264)
T KOG0863|consen 75 AGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNV 153 (264)
T ss_pred eccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccE
Confidence 6999999999999999999999999999999999999999999999999999999999999999776 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC----CCcEEEEEEEcCCCeEEcCHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG----QKNLEIAVMRHGKPVEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~----~~~iei~ii~~~~~~~~l~~~ei~~~~ 156 (174)
.++++.+||+.|+.++++||++..+.+..+.+|.|..++.||+..+..+ ..+++|.|+.+|.+|++++.+++..++
T Consensus 154 ~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~ 233 (264)
T KOG0863|consen 154 FECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYV 233 (264)
T ss_pred EEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHH
Confidence 9999999999999999999999865433499999999999999998643 689999999999999999999999888
Q ss_pred HHhccch
Q psy13966 157 NEIEKEK 163 (174)
Q Consensus 157 ~~~~~~~ 163 (174)
.-.+..+
T Consensus 234 ~~~~~~~ 240 (264)
T KOG0863|consen 234 DLFKKVD 240 (264)
T ss_pred HHhhcCC
Confidence 8776643
No 30
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-32 Score=207.78 Aligned_cols=140 Identities=24% Similarity=0.346 Sum_probs=130.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.+++|.++..|+++++++++++.++++|++.+|.|. .||+|++||||||++| |+||.+||+|++
T Consensus 46 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~-----~p~~v~~ivaG~d~~g-~~ly~~d~~G~~ 119 (189)
T cd03763 46 AGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ-----GHIGAALVLGGVDYTG-PHLYSIYPHGST 119 (189)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC-----CccceeEEEEeEcCCC-CEEEEECCCCCE
Confidence 7999999999999999999999999999999999999999997653 3999999999999665 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~ 149 (174)
.+++++|+|+++..++++|++.|+|+| |++||++++.+||..+.+++ +++++|++++++| ++...|
T Consensus 120 ~~~~~~a~G~~~~~~~~~L~~~~~~~l--s~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~ 188 (189)
T cd03763 120 DKLPFVTMGSGSLAAMSVLEDRYKPDM--TEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRN 188 (189)
T ss_pred EecCEEEEcCCHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecC
Confidence 999999999999999999999999998 99999999999999998864 7899999999997 665543
No 31
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-31 Score=206.20 Aligned_cols=135 Identities=14% Similarity=0.261 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|+..++++++++.++++++.++|.++ |||+|++||||||++++|+||.+||+|++
T Consensus 46 sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~ 120 (188)
T cd03762 46 SGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGML 120 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCE
Confidence 7999999999999999999999999999999999999999997653 79999999999997566999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
.+++++++|+++..++++|++.|+++| +++||++++++||..+.+++ ++.++|++|+++|
T Consensus 121 ~~~~~~~~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 121 IRQPFAIGGSGSTYIYGYVDANYKPGM--TLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred EecCEEEEcccHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 999999999999999999999999999 99999999999999999965 7899999999987
No 32
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=2.9e-31 Score=203.61 Aligned_cols=139 Identities=23% Similarity=0.356 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++..|++.++++++++.++++++++++.+++ |||+|++||||||++++|+||.+||+|++
T Consensus 46 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~ 121 (189)
T cd01912 46 AGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSL 121 (189)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCe
Confidence 79999999999999999999999999999999999999999976654 89999999999997677999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEM 146 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~ 146 (174)
.+++++|+|+++..++++|++.|+|+| +++||++++.+||..+.+++ +..++|.+++++| ++.
T Consensus 122 ~~~~~~a~G~~~~~~~~~Le~~~~~~~--s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 122 IEAPFVATGSGSKYAYGILDRGYKPDM--TLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred EecCEEEEcccHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 999999999999999999999999998 99999999999999988864 7899999999987 543
No 33
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.98 E-value=1.6e-31 Score=209.10 Aligned_cols=135 Identities=34% Similarity=0.621 Sum_probs=126.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcceeeeeEEEEeCCCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN-----GRRPFGISCLIGGFDYDGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~-----~~RP~gv~~il~G~D~~g~~~Ly~vd 75 (174)
||+.+|++.+.+++|.++..|++.++++|+++.+++.|+.++|.|++.. +.|||+|++||+|||++ +|+||.+|
T Consensus 72 sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~-gp~Ly~vd 150 (213)
T cd03753 72 SGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN-GPQLFHTD 150 (213)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC-CCEEEEEC
Confidence 7999999999999999999999999999999999999999999998743 47999999999999965 59999999
Q ss_pred CCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEE
Q psy13966 76 PSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVM 138 (174)
Q Consensus 76 ~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii 138 (174)
|+|++.+++++|+|+++..++++|++.|+++| +++||++++++||+.+.++ ++++++|+++
T Consensus 151 ~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~l--s~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 151 PSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDM--TLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred CCCCeecccEEEECCCcHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999998 9999999999999998765 3688999874
No 34
>KOG0184|consensus
Probab=99.98 E-value=4.6e-32 Score=206.83 Aligned_cols=158 Identities=28% Similarity=0.423 Sum_probs=141.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|+.+|++.|.+++|.++.+|+.+|+.++|...++.++++++|.||.|+..|||||+.|+++||. ++||||.+||||..
T Consensus 79 aGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~ 157 (254)
T KOG0184|consen 79 AGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSS 157 (254)
T ss_pred eccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999995 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcC-CCeEEcCHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHG-KPVEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~-~~~~~l~~~ei~~~~ 156 (174)
+.|+++|+|.|.+.|+++|||+.-.+| +++|+++.+.++|+.+.+.. ...+|++|++.+ ++.+..-|+|+-+..
T Consensus 158 ~~Y~~aaiGKgrq~aKtElEKL~~~~m--t~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea 235 (254)
T KOG0184|consen 158 YGYKGAAIGKGRQAAKTELEKLKIDEM--TCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEA 235 (254)
T ss_pred cceeeeeccchhHHHHHHHHhcccccc--cHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHH
Confidence 999999999999999999999998888 99999999999999999853 458899999876 335544455776666
Q ss_pred HHhcc
Q psy13966 157 NEIEK 161 (174)
Q Consensus 157 ~~~~~ 161 (174)
.++..
T Consensus 236 ~~~a~ 240 (254)
T KOG0184|consen 236 EKYAK 240 (254)
T ss_pred HHHHH
Confidence 65543
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=99.98 E-value=3.7e-31 Score=202.67 Aligned_cols=136 Identities=41% Similarity=0.715 Sum_probs=131.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++..|++.++.+++++.+++.++.++|.+++++++|||++++|++|||++++|+||.+||+|++
T Consensus 51 sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~ 130 (190)
T PF00227_consen 51 SGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSY 130 (190)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEE
T ss_pred cccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred eee-eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEE
Q psy13966 81 YEW-KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVM 138 (174)
Q Consensus 81 ~~~-~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii 138 (174)
.++ +++|+|+|+..++++|++.|+++| +++||++++.+||..+.+++ +++++|++|
T Consensus 131 ~~~~~~~aiG~g~~~~~~~l~~~~~~~~--~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 131 IECKRFAAIGSGSQFAQPILEKLYKPDL--SLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp EEBSSEEEESTTHHHHHHHHHHHHTTTS--SHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred ccccccccchhcchhhhHHHHhhccCCC--CHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999 699999999999999999999999 99999999999999999854 789999886
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.97 E-value=2.5e-30 Score=196.84 Aligned_cols=134 Identities=40% Similarity=0.672 Sum_probs=127.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|++.++.+++++.+++.|++++|.++++ .|||++++||+|||.+++|+||.+||+|++
T Consensus 46 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~ 123 (182)
T cd01906 46 AGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSY 123 (182)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCE
Confidence 699999999999999999999999999999999999999999999876 899999999999997677999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEE
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVM 138 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii 138 (174)
.+++++|+|+++..++++|++.|+++| |++|+++++.+||..+.+++ +..++|+++
T Consensus 124 ~~~~~~a~G~g~~~~~~~L~~~~~~~~--s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 124 IEYKATAIGSGSQYALGILEKLYKPDM--TLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred eeccEEEECCCcHHHHHHHHHHccCCC--CHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999999999999999998 99999999999999999864 578888874
No 37
>KOG0177|consensus
Probab=99.94 E-value=4.3e-26 Score=170.33 Aligned_cols=143 Identities=16% Similarity=0.262 Sum_probs=134.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|..+|+.++.+++...++.|++++|.++||...|+++++.++.+.. +.+||.|++++||+|.+.+|.||++|..|+.
T Consensus 47 ~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~ 124 (200)
T KOG0177|consen 47 VGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATL 124 (200)
T ss_pred ecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhc
Confidence 58899999999999999999999999999999999999999988764 4789999999999999877999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc---CCCcEEEEEEEcCCCeEEcC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS---GQKNLEIAVMRHGKPVEMLS 148 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~---~~~~iei~ii~~~~~~~~l~ 148 (174)
.+.++++.|.++.++.++|++.|+|+| |.+||+++..+|+.++.+| +..++.+.+|+||| ++.++
T Consensus 125 ~~vpy~~hGy~~~f~~sIlDr~Y~pdm--t~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 125 VSVPYAAHGYGSYFCLSILDRYYKPDM--TIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred ccCCcccccchhhhhHHHHHhhhCCCC--CHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecc
Confidence 999999999999999999999999999 9999999999999999986 67899999999998 66554
No 38
>KOG0179|consensus
Probab=99.93 E-value=1.2e-24 Score=165.03 Aligned_cols=140 Identities=19% Similarity=0.323 Sum_probs=129.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+++|+.+|...++.....|+..++..|++..+|+.|+..+ | +.++.||.+..||+|+|++|++.+|+.||.|++
T Consensus 75 sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsy 150 (235)
T KOG0179|consen 75 SGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSY 150 (235)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcce
Confidence 799999999999999999999999999999999999999998 3 457889999999999999999999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcc-c--------ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCe
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYK-S--------EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPV 144 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~-~--------~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~ 144 (174)
.+.-+.|-|+++..++++|+.+.. + ..+|++++|+.++.++|..+.+++ ++.++|.|++++|..
T Consensus 151 er~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~ 226 (235)
T KOG0179|consen 151 ERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVE 226 (235)
T ss_pred eeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEE
Confidence 999999999999999999998752 2 234799999999999999999986 899999999999853
No 39
>KOG0175|consensus
Probab=99.93 E-value=3e-25 Score=172.66 Aligned_cols=154 Identities=17% Similarity=0.300 Sum_probs=142.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|-++|++.+-+.+..+|..|++++++-|++...+++||++++.|. ++ -+.+..+|||||+.| |.||.||..|+.
T Consensus 117 AGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~Yk---Gm-GLsmGtMi~G~Dk~G-P~lyYVDseG~R 191 (285)
T KOG0175|consen 117 AGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYK---GM-GLSMGTMIAGWDKKG-PGLYYVDSEGTR 191 (285)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhcc---Cc-chhheeeEeeccCCC-CceEEEcCCCCE
Confidence 5889999999999999999999999999999999999999996554 33 478899999999776 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
..-+-.++|+||.+|+++|+..|+++| +.+||.+|+.+++..+..+| +..|.++.|+++| |..+++.++..+..
T Consensus 192 l~G~~FSVGSGs~yAYGVLDsgYr~dl--s~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~~L~~ 268 (285)
T KOG0175|consen 192 LSGDLFSVGSGSTYAYGVLDSGYRYDL--SDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVSELHY 268 (285)
T ss_pred ecCceEeecCCCceeEEeeccCCCCCC--CHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHHHHHH
Confidence 999999999999999999999999999 99999999999999999885 7899999999997 99999999999977
Q ss_pred Hhccc
Q psy13966 158 EIEKE 162 (174)
Q Consensus 158 ~~~~~ 162 (174)
.+.+.
T Consensus 269 ~~~e~ 273 (285)
T KOG0175|consen 269 HYYEV 273 (285)
T ss_pred HHHHh
Confidence 76553
No 40
>KOG0174|consensus
Probab=99.91 E-value=3.2e-24 Score=160.99 Aligned_cols=152 Identities=9% Similarity=0.196 Sum_probs=139.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||.++|.|.+.+.++.....|...++.++++...|+.++.+.+.|. ..+.+++||+|||++.+.++|.+...|..
T Consensus 65 SGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~r-----e~L~AgliVAGwD~~~gGqVY~iplGG~l 139 (224)
T KOG0174|consen 65 SGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYR-----EMLSAGLIVAGWDEKEGGQVYSIPLGGSL 139 (224)
T ss_pred CCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCH-----HhhhcceEEeecccccCceEEEeecCceE
Confidence 7999999999999999999999999999999999999999985443 35889999999999888999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC-eEEcCHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP-VEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~-~~~l~~~ei~~~~ 156 (174)
.+.++..-|+||.+++++++..|+|+| ++||++.++.+++.-++.+| +..|.+.+|+++|. ++.++++++..+.
T Consensus 140 ~rq~~aIgGSGStfIYGf~D~~~r~nM--t~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 140 TRQPFAIGGSGSTFIYGFCDANWRPNM--TLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred eecceeeccCCceeeeeeehhhcCCCC--CHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 999999999999999999999999999 99999999999999999986 68999999999986 5688898887776
Q ss_pred HHh
Q psy13966 157 NEI 159 (174)
Q Consensus 157 ~~~ 159 (174)
.+.
T Consensus 218 v~t 220 (224)
T KOG0174|consen 218 VET 220 (224)
T ss_pred ccC
Confidence 544
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.89 E-value=8.5e-22 Score=145.47 Aligned_cols=117 Identities=37% Similarity=0.584 Sum_probs=112.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|..+|++.+.++++.++..|++.++.++++..+++.+++.++.+++ .||+++++||+|+|+ ++|+||.+||+|.+
T Consensus 46 sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~ 121 (164)
T cd01901 46 AGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPV 121 (164)
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCE
Confidence 68999999999999999999999999999999999999999998886 899999999999997 67999999999999
Q ss_pred eee-eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHH
Q psy13966 81 YEW-KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALL 123 (174)
Q Consensus 81 ~~~-~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~ 123 (174)
..+ .++++|+++..+.++|++.|++++ +.+++++++.+||.
T Consensus 122 ~~~~~~~~~G~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~ 163 (164)
T cd01901 122 IENPGAVATGSRSQRAKSLLEKLYKPDM--TLEEAVELALKALK 163 (164)
T ss_pred eecCcEEEECCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Confidence 999 999999999999999999999998 99999999999985
No 42
>KOG0180|consensus
Probab=99.85 E-value=2.5e-20 Score=137.73 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=128.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|+.+|++++.++++..-..|+++.++.|.|+.+++.+|.+++ . .++-||.+..+|||.|++++|.+..+|..|..
T Consensus 54 ~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lY--e--kRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~ 129 (204)
T KOG0180|consen 54 TGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLY--E--KRFGPYFTEPVVAGLDDDNKPFICGMDLIGCI 129 (204)
T ss_pred cccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHH--H--hhcCCcccceeEeccCCCCCeeEeecccccCc
Confidence 6899999999999999999999999999999999999999993 2 35679999999999999999999999999998
Q ss_pred eee-eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 81 YEW-KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 81 ~~~-~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
..- ++++.|.++...++.+|..|+|+| ..+++++.+.++|.++.++| ++...+++|+||.
T Consensus 130 ~~~~DFVvsGTa~e~L~GmCE~ly~pnm--epd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 130 DAPKDFVVSGTASEQLYGMCEALYEPNM--EPDELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred CccCCeEEecchHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 775 799999999999999999999999 99999999999999999986 8999999999985
No 43
>KOG0185|consensus
Probab=99.83 E-value=2.5e-20 Score=143.61 Aligned_cols=151 Identities=17% Similarity=0.229 Sum_probs=135.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhH-hhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHK-LTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||-.+|+|.|.+.+.....+.. +..|..+.|+.++++|+..+ |..++.+.|++.+++|||+|++|.|.|-.+|.-|.
T Consensus 87 sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~ 164 (256)
T KOG0185|consen 87 SGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGV 164 (256)
T ss_pred CccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccc
Confidence 6899999999999999887753 66779999999999999999 77788999999999999999989999999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHH
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEE 154 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~ 154 (174)
.++.+..|+|.|..++.++|++.|. ....++.+||.+++.+|++....+| .+.++|++|+++| +.+-.|..|+.
T Consensus 165 ~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv~~ 242 (256)
T KOG0185|consen 165 AYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQVKT 242 (256)
T ss_pred cccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceeeee
Confidence 9999999999999999999999997 2222499999999999999999986 5799999999986 77776666653
No 44
>KOG0173|consensus
Probab=99.82 E-value=2.4e-19 Score=139.51 Aligned_cols=134 Identities=22% Similarity=0.361 Sum_probs=121.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|-.+|...+.+-+-.+...|++..++++++-..-..+.+.+..|. + -.|+.+|++|+|..| ||||++-|.|+.
T Consensus 83 AGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYq---G--~IgA~LiiGGvD~TG-pHLy~i~phGSt 156 (271)
T KOG0173|consen 83 AGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQ---G--HIGAALILGGVDPTG-PHLYSIHPHGST 156 (271)
T ss_pred CCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhc---C--cccceeEEccccCCC-CceEEEcCCCCc
Confidence 4788999999999999999999999999998877778888875553 2 378999999999887 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
...++.++|+|+..+++.||.+|+|+| +.+||++++.+|+..-+..| +.+|.+.+|++.+
T Consensus 157 d~~Pf~alGSGslaAmsvlEsr~k~dl--t~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 157 DKLPFTALGSGSLAAMSVLESRWKPDL--TKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred CccceeeeccchHHHHHHHHHhcCccc--CHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 999999999999999999999999999 99999999999999887654 7899999999754
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.75 E-value=3e-17 Score=123.92 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcce-eeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG-ISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~g-v~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||..+|++.|.++++.++..|+...++ .+++.+..++ . ...+|+. +.+++++| ++||.+||.|.
T Consensus 47 aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l~-~----~~~~~~l~a~~iv~~~-----~~ly~id~~G~ 111 (171)
T cd01913 47 AGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDWR-T----DRYLRRLEAMLIVADK-----EHTLLISGNGD 111 (171)
T ss_pred cccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHHH-h----ccCcCceEEEEEEeCC-----CcEEEECCCCC
Confidence 699999999999999999999988774 3344433332 1 1345665 66666544 49999999999
Q ss_pred eeeee--eEecCcChHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHHhhcC---CCcEEEE
Q psy13966 80 YYEWK--ANATGRSAKTVREFLEKFYKSE-EMTTEKATIKLAIRALLEVVQSG---QKNLEIA 136 (174)
Q Consensus 80 ~~~~~--~~aiG~gs~~a~~~Lek~~~~~-~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ 136 (174)
+.+.+ +.++|+||.+|+++|+..|+++ | + +.++|++++..+.++| +++|.+-
T Consensus 112 ~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~m--s---~~~la~~Av~~A~~rd~~tg~~i~~~ 169 (171)
T cd01913 112 VIEPDDGIAAIGSGGNYALAAARALLDHTDL--S---AEEIARKALKIAADICIYTNHNITVE 169 (171)
T ss_pred EeccCCCeEEEeCCHHHHHHHHHHhhccCCC--C---HHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 99984 9999999999999999999995 8 7 5599999999999986 6677664
No 46
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.74 E-value=4.3e-17 Score=123.55 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=95.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+. +. ++..++.+..+. .+...+|+.+++|++ |. |+||.+||.|++
T Consensus 48 aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l~----~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~ 113 (172)
T PRK05456 48 AGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDWR----TDRYLRRLEAMLIVA--DK---EHSLIISGNGDV 113 (172)
T ss_pred eccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHHH----hccCCCccEEEEEEE--cC---CcEEEECCCCcE
Confidence 69999999999999999999883 22 355554443332 122347888999994 42 799999999999
Q ss_pred eee--eeEecCcChHHHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEE
Q psy13966 81 YEW--KANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAV 137 (174)
Q Consensus 81 ~~~--~~~aiG~gs~~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~i 137 (174)
.+. +++++|+|+.+++++|++.|+ |+| ||++++++|+..+.+++ +++|.|-.
T Consensus 114 ~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-----eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 114 IEPEDGIIAIGSGGNYALAAARALLENTDL-----SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred eccCCCeEEEecCHHHHHHHHHHhhhcCCC-----CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 776 799999999999999999999 987 99999999999999985 66776643
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.72 E-value=1.7e-16 Score=119.77 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+... .+.+++.++++ ..+...+.+.+.+|++|| ++||.+||.|.+
T Consensus 47 aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~----~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ 112 (171)
T TIGR03692 47 AGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDW----RTDRYLRRLEAMLIVADK-----ETSLLISGTGDV 112 (171)
T ss_pred cchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHH----hhcccccccEEEEEEEcC-----CCEEEEcCCCcE
Confidence 6999999999999999999988743 35555554442 112222334477777644 499999999999
Q ss_pred eee--eeEecCcChHHHHHHHHhhc-ccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEE
Q psy13966 81 YEW--KANATGRSAKTVREFLEKFY-KSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIA 136 (174)
Q Consensus 81 ~~~--~~~aiG~gs~~a~~~Lek~~-~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ 136 (174)
.+. ++.++|+||.+|+++|+..| +++| + |+++|++++..+.++| +++|.|-
T Consensus 113 ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~--s---a~~la~~Av~~A~~rd~~sg~~i~v~ 169 (171)
T TIGR03692 113 IEPEDGIAAIGSGGNYALAAARALLRNTDL--S---AEEIAREALKIAADICIYTNHNITIE 169 (171)
T ss_pred eccCCCeEEEeCCHHHHHHHHHHhhhcCCC--C---HHHHHHHHHHHHHhhCccCCCCEEEE
Confidence 996 59999999999999999999 4666 5 9999999999999986 5677664
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.017 Score=44.65 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=93.1
Q ss_pred CCchHHHHHHHHHHHHHHHH--hHhhcCCCCCHHHHHHHHHHHHHHhh-hcCC-----CCcceeeeeEEEEeCCCCceEE
Q psy13966 1 TGLTADARILINRAQIECQS--HKLTVEDPVTLEYITRYIAGLKQKYT-QSNG-----RRPFGISCLIGGFDYDGKPRLY 72 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~--~~~~~~~~i~~~~la~~ls~~~~~~t-~~~~-----~RP~gv~~il~G~D~~g~~~Ly 72 (174)
+|.-+=.|.+++.+....+. +....+. .+.-+.+.+++....+-. +.+. ---|-|++|++|-=..+-|.||
T Consensus 50 aGNLA~tQaV~~ll~e~~~~d~~~~L~n~-~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly 128 (255)
T COG3484 50 AGNLAITQAVLHLLDERIQRDDGDSLLNI-PSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLY 128 (255)
T ss_pred cCccHHHHHHHHHHHHHhhccchhhhhcc-hhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeE
Confidence 46667778888877766642 2222222 355666666666554322 1111 1358899999997544458999
Q ss_pred EeCCCCceeee----eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcC
Q psy13966 73 QTEPSGIYYEW----KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHG 141 (174)
Q Consensus 73 ~vd~~G~~~~~----~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~ 141 (174)
.+-|.|++.+- .+.-+|. ..+-+++|++.+..++ +++|+.+.++-.+..-++.+ +--+.+.++.+|
T Consensus 129 ~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~--pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~d 201 (255)
T COG3484 129 LIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDT--PLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEAD 201 (255)
T ss_pred EEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccC--CHHHHhhheEEecchhhhccccccCCceeEEEecc
Confidence 99999999874 5667886 4567899999999998 99999988887776666543 345666666665
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.19 Score=37.63 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
+|..+|+..|.+++..++.+|.-+ +...+..++.-. ++ -..+|-+-.-++++ |+ -.+|-+.-.|-.
T Consensus 51 AGstADaftLfe~fe~kle~~~g~------L~raavelaKdw--r~-Dk~lr~LEAmllVa--d~---~~il~isG~gdV 116 (178)
T COG5405 51 AGSTADAFTLFERFEAKLEQYQGD------LFRAAVELAKDW--RT-DKYLRKLEAMLLVA--DK---THILIITGNGDV 116 (178)
T ss_pred cccchhHHHHHHHHHHHHHHccCc------HHHHHHHHHHhh--hh-hhHHHHHhhheeEe--CC---CcEEEEecCcce
Confidence 588999999999999999887511 111233333322 11 11235555666664 33 467777777776
Q ss_pred eee--eeEecCcChHHHHHHHHhhccc-ccccCHHHHHHHHHHHHHHHhhc---CCCcEEEEEE
Q psy13966 81 YEW--KANATGRSAKTVREFLEKFYKS-EEMTTEKATIKLAIRALLEVVQS---GQKNLEIAVM 138 (174)
Q Consensus 81 ~~~--~~~aiG~gs~~a~~~Lek~~~~-~~~~s~~eai~l~~~~l~~~~~~---~~~~iei~ii 138 (174)
.+. ..++||+|.++|.+--.-.+.. ++ .|-+++.++|.-+-+. .+++|.|-.+
T Consensus 117 ~epe~~~~aIGSGgnyAl~AarAl~~~~~l-----sA~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 117 IEPEDDIIAIGSGGNYALSAARALMENTEL-----SAREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred ecCCCCeEEEcCCchHHHHHHHHHHhccCC-----CHHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 664 4899999999999998888753 44 4556677777666542 3455555444
No 50
>KOG3361|consensus
Probab=88.52 E-value=1.1 Score=32.58 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=53.9
Q ss_pred EEeCCCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHH
Q psy13966 72 YQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQ 151 (174)
Q Consensus 72 y~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~e 151 (174)
..+|-+|.+...++-..|.||..|-+-+-..|-..+ |++|+..+--.-+.+-+...+ |.+ -..+|..+-
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgk--t~dea~kIkNteIAKeL~LPP--VKL-------HCSMLAEDA 139 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGK--TLDEALKIKNTEIAKELSLPP--VKL-------HCSMLAEDA 139 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccc--cHHHHHhcccHHHHHhccCCc--hhh-------hhHHHHHHH
Confidence 568889999999999999999999999999999888 999987653222222111111 111 033566666
Q ss_pred HHHHHHHhc
Q psy13966 152 IEEYVNEIE 160 (174)
Q Consensus 152 i~~~~~~~~ 160 (174)
|...+..+.
T Consensus 140 IKaAikdyk 148 (157)
T KOG3361|consen 140 IKAAIKDYK 148 (157)
T ss_pred HHHHHHHHH
Confidence 766666663
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=73.31 E-value=16 Score=28.23 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcC
Q psy13966 93 KTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHG 141 (174)
Q Consensus 93 ~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~ 141 (174)
+.+...|.+.|++.| +++++..+...+|..+.... ...+.+...++.
T Consensus 131 ~ia~~~lkk~~~~k~--~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKM--SLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 788899999999888 99999999999999885532 467777766654
No 52
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=66.03 E-value=15 Score=25.13 Aligned_cols=32 Identities=3% Similarity=0.209 Sum_probs=25.1
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhcc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~~ 161 (174)
.+.+.|.+++++.+ +|.+|++++-.+...+.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 46899999999744 799999999998887743
No 53
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=61.30 E-value=15 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe
Q psy13966 28 PVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFD 64 (174)
Q Consensus 28 ~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D 64 (174)
.-+|++++..|+.+++.|.+.|+.+ .++|+||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRK----RVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeec
Confidence 4578999999999999999988776 55888885
No 54
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=59.72 E-value=6 Score=23.09 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.0
Q ss_pred ecCcChHHHHHHHHhhc-ccccccCHHHHHHHHHHH
Q psy13966 87 ATGRSAKTVREFLEKFY-KSEEMTTEKATIKLAIRA 121 (174)
Q Consensus 87 aiG~gs~~a~~~Lek~~-~~~~~~s~~eai~l~~~~ 121 (174)
+.|.....+...+.+.. .+++ +.++.|..+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~--~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGM--DVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS---HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHhh
Confidence 46888999999999887 6677 999988887654
No 55
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=56.80 E-value=86 Score=23.90 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCceeeeeeEecC
Q psy13966 10 LINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATG 89 (174)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~aiG 89 (174)
|.++.|.....-+...+.+++...+|..|++.+. ..+|-++..|.+..|.. ..+
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~-------------------------aNvyIis~kGkiLGy~~-~~~ 55 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLE-------------------------ANVYIISRKGKILGYSF-IDD 55 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHT-------------------------SEEEEEETTSBEEEEE--SS-
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhc-------------------------CcEEEEeCCccEEEEec-cCC
Confidence 5566666555555568899999999999999982 23444455555544432 355
Q ss_pred cChHHHHHHHHhhccc
Q psy13966 90 RSAKTVREFLEKFYKS 105 (174)
Q Consensus 90 ~gs~~a~~~Lek~~~~ 105 (174)
..+..+..+++...-|
T Consensus 56 ~~~~~~~~~~~~~~fp 71 (177)
T PF06018_consen 56 FECDRMEEMLEEKRFP 71 (177)
T ss_dssp ---HHHHHHHHHTB--
T ss_pred CCcHHHHHHHhcCcCC
Confidence 5666666777666544
No 56
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.34 E-value=37 Score=27.39 Aligned_cols=135 Identities=21% Similarity=0.189 Sum_probs=75.5
Q ss_pred HhHhhcCCCCCHHHHHHHHHHHHHHhhh---cCCCCcceeeeeEEEEeCCC-----CceEEEe-------CCCCceee--
Q psy13966 20 SHKLTVEDPVTLEYITRYIAGLKQKYTQ---SNGRRPFGISCLIGGFDYDG-----KPRLYQT-------EPSGIYYE-- 82 (174)
Q Consensus 20 ~~~~~~~~~i~~~~la~~ls~~~~~~t~---~~~~RP~gv~~il~G~D~~g-----~~~Ly~v-------d~~G~~~~-- 82 (174)
..++-.|.--+-++|+++...+--..+- ....|-..-+++++-+...+ .-.+|.+ +..|.-..
T Consensus 35 EekLYsGeIkteEEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~ 114 (293)
T COG4079 35 EEKLYSGEIKTEEELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTST 114 (293)
T ss_pred HHHhhcCccccHHHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEee
Confidence 3344456666778888777665322221 11223443444554443321 1234432 22222111
Q ss_pred -----eeeEecCc--ChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC-CeEEcCHHH
Q psy13966 83 -----WKANATGR--SAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK-PVEMLSVAQ 151 (174)
Q Consensus 83 -----~~~~aiG~--gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~-~~~~l~~~e 151 (174)
...++.|. --+.+..+|..+|.+.+ +++++.+....+|..+.... ++...++.++++- ++.+|-.++
T Consensus 115 ~~g~g~aiIv~Gnk~~Ke~aneflk~~l~~k~--~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkD 192 (293)
T COG4079 115 SQGKGSAIIVFGNKFTKEVANEFLKDNLTKKS--KLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKD 192 (293)
T ss_pred ecCCCceEEEECcHHHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHH
Confidence 11223342 23567888999999888 99999998888887776432 5678888887752 255666667
Q ss_pred HHHHH
Q psy13966 152 IEEYV 156 (174)
Q Consensus 152 i~~~~ 156 (174)
++.+.
T Consensus 193 ie~L~ 197 (293)
T COG4079 193 IETLR 197 (293)
T ss_pred HHHHH
Confidence 66553
No 57
>PRK08868 flagellar protein FlaG; Provisional
Probab=54.40 E-value=80 Score=23.27 Aligned_cols=31 Identities=3% Similarity=0.116 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~ 160 (174)
.+.+-|.|++++.+ +|.+|++|+-.+..++.
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~ 131 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLA 131 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHH
Confidence 46788999988744 89999999999999885
No 58
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=54.10 E-value=31 Score=20.35 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=26.1
Q ss_pred EEeCCCCceeeeeeEecCcChHHHHHHHHhhc
Q psy13966 72 YQTEPSGIYYEWKANATGRSAKTVREFLEKFY 103 (174)
Q Consensus 72 y~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~ 103 (174)
|.|.|+|.+...--...|.+...+...|+...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999987777778988888888887654
No 59
>PRK07738 flagellar protein FlaG; Provisional
Probab=52.14 E-value=80 Score=22.40 Aligned_cols=32 Identities=3% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhcc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~~ 161 (174)
.+.+-|.+++++.+ +|.+||+++-.++.++.+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 46889999998744 899999999999888743
No 60
>PRK08452 flagellar protein FlaG; Provisional
Probab=50.63 E-value=90 Score=22.35 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhcc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~~ 161 (174)
.+.+-|.+++.+.+ +|.+||+++-.+..++.+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 46788889988744 899999999998887743
No 61
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=47.94 E-value=71 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC
Q psy13966 109 TTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP 143 (174)
Q Consensus 109 ~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~ 143 (174)
++++.+.+++..++.++... +..|.|.+++..|.
T Consensus 8 Ls~e~a~~ii~aA~a~a~~~-g~~VtvaVVD~~G~ 41 (141)
T COG3193 8 LSLELANKIIAAAVAEAQQL-GVPVTVAVVDAGGH 41 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHh-CCceEEEEECCCCC
Confidence 49999999999999888876 78999999999876
No 62
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=46.94 E-value=44 Score=22.22 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=23.3
Q ss_pred EEEEE-cCCCeEEcCHHHHHHHHHHhccch
Q psy13966 135 IAVMR-HGKPVEMLSVAQIEEYVNEIEKEK 163 (174)
Q Consensus 135 i~ii~-~~~~~~~l~~~ei~~~~~~~~~~~ 163 (174)
|.+.+ ..+.|++++|++|..+...-...+
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~ 50 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKNRP 50 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTTST
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcCCc
Confidence 66888 456799999999999988776544
No 63
>KOG3652|consensus
Probab=46.27 E-value=84 Score=29.25 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcC-CCCcceeeeeEEEEeCCCCceEEEeCCCCceeeeeeEe
Q psy13966 9 ILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN-GRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANA 87 (174)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~-~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~a 87 (174)
+....+|..|. ...|++|....|.++-+-++|-..... -.+|+-+++++ +| |-||..|.-|-=.-.++..
T Consensus 198 Ac~sLcRIfcS---KksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~l-----n~-p~LFccdLkGId~llP~Fi 268 (1215)
T KOG3652|consen 198 ACASLCRIFCS---KKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFL-----NG-PNLFCCDLKGIDSLLPHFI 268 (1215)
T ss_pred HHHHHHHhhhc---ccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeee-----cC-CceeeecCCchhHhhHHHH
Confidence 33444444443 367999999999999998887443211 34677666655 55 9999999988643322211
Q ss_pred cCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhh
Q psy13966 88 TGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQ 127 (174)
Q Consensus 88 iG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~ 127 (174)
.----..+-..+-++++.-. +.-|.-...+++|...+-
T Consensus 269 ~ALd~il~dre~~rkfkS~~--n~tElRRa~in~LlSli~ 306 (1215)
T KOG3652|consen 269 FALDIILIDREKLRKFKSIS--NETELRRACINALLSLIC 306 (1215)
T ss_pred HHHHhhhccHHHhhhccccC--CHHHHHHHHHHHHHHhcc
Confidence 11111111122222333222 455666667777776664
No 64
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=42.99 E-value=1e+02 Score=24.43 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhccchH
Q psy13966 113 ATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164 (174)
Q Consensus 113 eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~~~~~ 164 (174)
.+.+.+.+++..+.+.+-..+.++.++.+. |++ |++||+.+..=+.....
T Consensus 27 ~G~~~~~~v~~~c~~~GI~~lT~yaFStEN-~~R-p~~EV~~Lm~L~~~~l~ 76 (226)
T TIGR00055 27 AGVKSLRRILRWCANLGVECLTLYAFSTEN-WKR-PKEEVDFLMELFEKKLD 76 (226)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhh-cCc-CHHHHHHHHHHHHHHHH
Confidence 344555555555555667899999999985 986 99999987665544333
No 65
>PRK09732 hypothetical protein; Provisional
Probab=40.39 E-value=1.1e+02 Score=22.04 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC---eEEcCH
Q psy13966 109 TTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP---VEMLSV 149 (174)
Q Consensus 109 ~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~---~~~l~~ 149 (174)
+|++.|..++..++..+.+. +..+.|.|++..|. |.+++.
T Consensus 7 Ltl~~A~~~~~aA~~~A~~~-g~~v~iaVvD~~G~l~a~~RmDg 49 (134)
T PRK09732 7 LSQQMASAIIAAGQEEAQKN-NWSVSIAVADDGGHLLALSRMDD 49 (134)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCEEEEEEcCCCCEEEEEEcCC
Confidence 49999999999999988876 55899999999876 445544
No 66
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=39.60 E-value=56 Score=20.53 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHH
Q psy13966 11 INRAQIECQSHKLTVEDPVTLEYITRYIAGLK 42 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 42 (174)
+++++..........|+.++.+.||..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 45556666677778999999999999876433
No 67
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=39.49 E-value=48 Score=22.26 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=22.7
Q ss_pred EEEEEEc-CCCeEEcCHHHHHHHHHHhcc
Q psy13966 134 EIAVMRH-GKPVEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 134 ei~ii~~-~~~~~~l~~~ei~~~~~~~~~ 161 (174)
-|.+.++ +|.|+.+++++|..+...-+.
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~Kn 48 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQRKN 48 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhhcC
Confidence 4678886 577999999999999876644
No 68
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=39.38 E-value=70 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcC
Q psy13966 26 EDPVTLEYITRYIAGLKQKYTQSN 49 (174)
Q Consensus 26 ~~~i~~~~la~~ls~~~~~~t~~~ 49 (174)
+..-+++.|+++++++-|-+....
T Consensus 9 ~~~aspeel~~Y~~~L~~Y~~lvt 32 (36)
T PF00159_consen 9 GDFASPEELAQYYAALRHYINLVT 32 (36)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHc
Confidence 456688999999999887665443
No 69
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=39.02 E-value=1.1e+02 Score=21.20 Aligned_cols=46 Identities=22% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHHHHHHHHH--hHhhc----CC----CCCHHHHHHHHHHHHHHhh
Q psy13966 1 TGLTADARILINRAQIECQS--HKLTV----ED----PVTLEYITRYIAGLKQKYT 46 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~--~~~~~----~~----~i~~~~la~~ls~~~~~~t 46 (174)
.|+.-|+..|.+.++..+.. |++.+ .. .+|++.||..|...+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 36667888887777764433 33332 11 2789999999999986554
No 70
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=38.70 E-value=71 Score=17.74 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh
Q psy13966 26 EDPVTLEYITRYIAGLKQKYTQ 47 (174)
Q Consensus 26 ~~~i~~~~la~~ls~~~~~~t~ 47 (174)
|..-+++.++++++.+-|-+..
T Consensus 9 g~~a~~e~l~~Y~~~L~~Yinl 30 (36)
T smart00309 9 GDDASPEDLRQYLAALREYINL 30 (36)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5677899999999998875544
No 71
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=38.21 E-value=1.8e+02 Score=23.61 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=40.2
Q ss_pred eEecCcChHHHHHHHHhhc----ccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCe
Q psy13966 85 ANATGRSAKTVREFLEKFY----KSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPV 144 (174)
Q Consensus 85 ~~aiG~gs~~a~~~Lek~~----~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~ 144 (174)
++|+|.|...++..+-... +..+ ++++|.+.+++-+.......+...-+..++++|.+
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~--~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGM--SPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCE
Confidence 4578999998887766544 2345 99999999888876655333445566677777654
No 72
>KOG3806|consensus
Probab=37.52 E-value=90 Score=23.82 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=22.7
Q ss_pred EEEEEEcCC-CeEEcCHHHHHHHHHHhcc
Q psy13966 134 EIAVMRHGK-PVEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 134 ei~ii~~~~-~~~~l~~~ei~~~~~~~~~ 161 (174)
-|.|..++| .|++++|+||..++..=+.
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~rK~ 115 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGARKN 115 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhhhhC
Confidence 467888777 7999999999998876543
No 73
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=37.49 E-value=1.1e+02 Score=21.53 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC
Q psy13966 109 TTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP 143 (174)
Q Consensus 109 ~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~ 143 (174)
+|.++|.+++..++..+.+.+- .+-|.|++..|.
T Consensus 3 l~~~~A~~l~~~a~~~a~~~g~-~v~iaVvd~~G~ 36 (132)
T PF03928_consen 3 LTLEDAWKLGDAAVEEARERGL-PVSIAVVDAGGH 36 (132)
T ss_dssp E-HHHHHHHHHHHHHHHHHTT----EEEEEETTS-
T ss_pred cCHHHHHHHHHHHHHHHHHhCC-CeEEEEEECCCC
Confidence 4899999999999999987643 488999999876
No 74
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=37.37 E-value=54 Score=17.86 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=9.1
Q ss_pred EeCCCCceeeeeeEecC
Q psy13966 73 QTEPSGIYYEWKANATG 89 (174)
Q Consensus 73 ~vd~~G~~~~~~~~aiG 89 (174)
.+||.|....|.+-+.|
T Consensus 10 ~~d~~G~~~~y~YD~~g 26 (38)
T PF05593_consen 10 VTDPDGRTTRYTYDAAG 26 (38)
T ss_pred EEcCCCCEEEEEECCCC
Confidence 34566665555554444
No 75
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=36.94 E-value=77 Score=17.60 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhh
Q psy13966 26 EDPVTLEYITRYIAGLKQKYTQ 47 (174)
Q Consensus 26 ~~~i~~~~la~~ls~~~~~~t~ 47 (174)
|..-+++.|+++++++-|-+..
T Consensus 9 g~~a~~eel~~Y~~~L~~Yinl 30 (36)
T cd00126 9 GDDASPEELRQYLAALREYINL 30 (36)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5667899999999998875544
No 76
>PHA02762 hypothetical protein; Provisional
Probab=36.75 E-value=54 Score=19.93 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=17.1
Q ss_pred eeeeeEEEEeCCCCceEEEeCCC
Q psy13966 55 GISCLIGGFDYDGKPRLYQTEPS 77 (174)
Q Consensus 55 gv~~il~G~D~~g~~~Ly~vd~~ 77 (174)
|-+++-.|+|++|.-.-.++.|-
T Consensus 26 g~afvtigide~g~iayisiep~ 48 (62)
T PHA02762 26 GEAFVTIGIDENDKISYISIEPL 48 (62)
T ss_pred ccEEEEEeECCCCcEEEEEeccc
Confidence 67888899999886666666653
No 77
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=36.57 E-value=1.4e+02 Score=23.44 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 114 TIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 114 ai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
+.+.+.+++..+.+.+-+.+.++.++.+. |++ +++||+.+..-+...
T Consensus 29 G~~~~~~i~~~~~~~gI~~lTvyaFS~eN-~~R-~~~EV~~Lm~l~~~~ 75 (221)
T cd00475 29 GAEKLRDILRWCLELGVKEVTLYAFSTEN-WKR-PKEEVDFLMELFRDV 75 (221)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeechhh-hCc-CHHHHHHHHHHHHHH
Confidence 44445555555555566899999999985 876 999998876655543
No 78
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=35.17 E-value=33 Score=18.48 Aligned_cols=18 Identities=6% Similarity=0.414 Sum_probs=14.8
Q ss_pred eEEcCHHHHHHHHHHhcc
Q psy13966 144 VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 144 ~~~l~~~ei~~~~~~~~~ 161 (174)
++=++++||+.+|+.+..
T Consensus 15 ~rGY~~~eVD~fLd~v~~ 32 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVAD 32 (34)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 455899999999999854
No 79
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=32.84 E-value=47 Score=26.28 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=32.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC
Q psy13966 24 TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY 65 (174)
Q Consensus 24 ~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~ 65 (174)
..|-++|+|.+-+.+++.++.-+-|-+...=|+++|+.|+=.
T Consensus 48 ldgp~fP~EYILrlM~swa~v~dpylRIQNTGvSVLfqG~Ft 89 (274)
T PHA03324 48 LDGPPIPAEYILEAMNSFLNIGEAWLRIQNTGQAVIVAGCFT 89 (274)
T ss_pred ccCCCCcHHHHHHHHHhhhcCCCceEEEecCceEEEEEeeec
Confidence 467889999999999999875543434456799999999853
No 80
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=31.32 E-value=1.8e+02 Score=20.24 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCCCeE-----EcCHHHHHHHHHHh
Q psy13966 119 IRALLEVVQSGQKNLEIAVMRHGKPVE-----MLSVAQIEEYVNEI 159 (174)
Q Consensus 119 ~~~l~~~~~~~~~~iei~ii~~~~~~~-----~l~~~ei~~~~~~~ 159 (174)
...|+..++.+.+.+.+..|.|||+.+ .++.++|-..++..
T Consensus 66 ~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 66 IQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 345555666556779999999999865 34556665555544
No 81
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=30.67 E-value=51 Score=23.50 Aligned_cols=31 Identities=6% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~ 160 (174)
.+.+-|.|++++++ ++.+||+++=.+...+.
T Consensus 77 lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~ 109 (120)
T COG1334 77 LGELVVKIIDKDTGEVIRQIPPEEALELAARMR 109 (120)
T ss_pred cCcEEEEEEECCCCcchhhCChHHHHHHHHHHH
Confidence 46788889988855 79999999988887763
No 82
>PF06333 Med13_C: Mediator complex subunit 13 C-terminal; InterPro: IPR009401 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med13 of the Mediator complex. It is a component of the SRB8-11 complex. The SRB8-11 complex is a regulatory module of the Mediator complex, which may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It acts by inhibiting the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.68 E-value=3.3e+02 Score=23.56 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=45.7
Q ss_pred eEEEeCCCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCH
Q psy13966 70 RLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 70 ~Ly~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~ 149 (174)
..-.+|..|...+.....+|......... . +.+++...+-+..............| +|++-| .++.
T Consensus 142 ~aawTD~~G~~~~t~~~~l~~~~~~~~~~--------~--~~~~v~~~iW~~~~~i~~~~~~~wrv-VI~r~g---~i~~ 207 (424)
T PF06333_consen 142 TAAWTDSRGELLETCSWCLGRPNRPRRRK--------S--SFSEVCQEIWEFTLGIISSSGVPWRV-VITRLG---RIPD 207 (424)
T ss_pred EEEEEcCCCCEEEEEEEECCCCCcccccc--------h--hHHHHHHHHHHHHHHHHhcCCceEEE-EEEecC---CCCh
Confidence 33568999999999888887655422111 1 33344444444444444444445555 455555 4899
Q ss_pred HHHHHHHHHhc
Q psy13966 150 AQIEEYVNEIE 160 (174)
Q Consensus 150 ~ei~~~~~~~~ 160 (174)
+|++.+-.-+.
T Consensus 208 ~El~~W~~l~~ 218 (424)
T PF06333_consen 208 DELKAWSRLLS 218 (424)
T ss_pred HHHHHHHHHHh
Confidence 99998866553
No 83
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=26.00 E-value=2.1e+02 Score=19.07 Aligned_cols=49 Identities=8% Similarity=-0.023 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC-eEEcCHHHHHHHHHHhcc
Q psy13966 110 TEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP-VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 110 s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~~~~~~~ 161 (174)
+.++..+.+...... ..+..+.+.|++.+|- +.+-+.+|++..++=++.
T Consensus 21 s~e~L~~~v~~~c~~---~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 21 SLEELCNEVRDMCRF---HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYEL 70 (83)
T ss_pred CHHHHHHHHHHHhCC---CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHh
Confidence 666666655554432 2356899999999765 789999999998876643
No 84
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.89 E-value=54 Score=25.23 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCceEEEeCCCCceeeeeeEecCcChHHHHHHHHhhcc
Q psy13966 58 CLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK 104 (174)
Q Consensus 58 ~il~G~D~~g~~~Ly~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~~ 104 (174)
++|.|+|+ +.+|..||.|.-. ...-...|+.-|+
T Consensus 151 v~itgyDk---~n~yynDpyG~kn----------~~~~~~~~e~g~n 184 (195)
T COG4990 151 VLITGYDK---YNIYYNDPYGYKN----------RKISHTYLEDGWN 184 (195)
T ss_pred eEeecccc---cceEeccccccch----------hhhhHHHHHHHHh
Confidence 46779985 8999999996432 3344566776665
No 85
>KOG1220|consensus
Probab=23.43 E-value=1.1e+02 Score=27.90 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=47.3
Q ss_pred ecCcChHHHHHHHHhhcc---------------------cccccCHHHHHHHHHHHHHH-H------hhcCCCcEEEEEE
Q psy13966 87 ATGRSAKTVREFLEKFYK---------------------SEEMTTEKATIKLAIRALLE-V------VQSGQKNLEIAVM 138 (174)
Q Consensus 87 aiG~gs~~a~~~Lek~~~---------------------~~~~~s~~eai~l~~~~l~~-~------~~~~~~~iei~ii 138 (174)
-.|.|..+.+..|++.-- |+. ..++|+++++++... . .+.|.+.+-++--
T Consensus 255 ~hGvG~~F~~~al~~~~~~~~~~v~eq~~Pdp~FPt~~~PNP--Eek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek 332 (607)
T KOG1220|consen 255 GHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPTVPFPNP--EEKGALDLSIKAALKNSADLVLANDPDADRFAVAEK 332 (607)
T ss_pred CCCccHHHHHHHHHHhCCCccccchhhcCCCCCCCCCCCCCc--chHHHHHHHHHHHhccCCcEEEecCCCcchhhheec
Confidence 369999999999995421 122 336777777766543 1 1234455555544
Q ss_pred EcCCCeEEcCHHHHHHHHHHh
Q psy13966 139 RHGKPVEMLSVAQIEEYVNEI 159 (174)
Q Consensus 139 ~~~~~~~~l~~~ei~~~~~~~ 159 (174)
.+|.|+.++.+|+-.++.-+
T Consensus 333 -~~G~wr~fnGNElgALl~~~ 352 (607)
T KOG1220|consen 333 -VSGEWRVFNGNELGALLSWW 352 (607)
T ss_pred -cCCcceeccchHHHHHHHHH
Confidence 56889999999999987765
No 86
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=22.71 E-value=2.4e+02 Score=23.22 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=40.4
Q ss_pred eeeEEEEeCCCCceEEEeCCCCceeeeeeEecCcChHHHHHHH---HhhcccccccCHHHHHHHH
Q psy13966 57 SCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFL---EKFYKSEEMTTEKATIKLA 118 (174)
Q Consensus 57 ~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~aiG~gs~~a~~~L---ek~~~~~~~~s~~eai~l~ 118 (174)
.+|.+|+ -| +-+-..-|+|.+.-.--.-.=+.+.+....| +..--.+| |++|||+.+
T Consensus 98 ~FImaGy--Lg-~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~--TV~daI~sv 157 (314)
T PF05113_consen 98 DFIMAGY--LG-APMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGM--TVQDAIKSV 157 (314)
T ss_pred cEEeecc--cC-CCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCc--CHHHHHHHh
Confidence 5788887 34 5566677888887666666677777777777 44444467 999998876
No 87
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=22.61 E-value=1.4e+02 Score=17.76 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcEEEEEEEc
Q psy13966 110 TEKATIKLAIRALLEVVQSGQKNLEIAVMRH 140 (174)
Q Consensus 110 s~~eai~l~~~~l~~~~~~~~~~iei~ii~~ 140 (174)
|++||++.|..-|... .+.+++-|+..
T Consensus 6 t~eeAi~~A~~~l~~~----~~~~~~eVi~~ 32 (52)
T PF14804_consen 6 TVEEAIEKALKELGVP----REELEYEVIEE 32 (52)
T ss_dssp SHHHHHHHHHHHTT------GGGEEEEEEE-
T ss_pred CHHHHHHHHHHHhCCC----hHHEEEEEEEc
Confidence 8999999998887543 35788888876
No 88
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=22.56 E-value=1.3e+02 Score=21.74 Aligned_cols=40 Identities=8% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhcc
Q psy13966 118 AIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 118 ~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~~ 161 (174)
..+.|..+.+.+. -.++.+||..+.++++|++.+.+.+..
T Consensus 19 ~rktL~eLL~ee~----P~i~lrdG~~h~f~k~ELe~L~~~lp~ 58 (132)
T PF01886_consen 19 ERKTLKELLEEEK----PSIILRDGSRHRFDKEELERLAEILPE 58 (132)
T ss_pred hhhhHHHHHhCCC----CeEEecCCCEEEEcHHHHHHHHHhCCH
Confidence 4455566654321 135678899999999999998887743
No 89
>KOG0330|consensus
Probab=22.37 E-value=92 Score=27.12 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-------CCceEE
Q psy13966 30 TLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYD-------GKPRLY 72 (174)
Q Consensus 30 ~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~-------g~~~Ly 72 (174)
|..+||..|+...+..++..+.| |..|++|.|.. .+|++.
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr---~~~lvGG~~m~~q~~~L~kkPhil 183 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLR---VAVLVGGMDMMLQANQLSKKPHIL 183 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeE---EEEEecCchHHHHHHHhhcCCCEE
Confidence 67999999999998887665554 89999999842 357773
No 90
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=22.29 E-value=2.4e+02 Score=21.24 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhh--cCCCCcc----eeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 32 EYITRYIAGLKQKYTQ--SNGRRPF----GISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 32 ~~la~~ls~~~~~~t~--~~~~RP~----gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
..-+..+++++.+|-= ..-.+|= +=..+|.|+|.+| -.|-..||-+.-
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg-~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDG-DSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCC-CeEEecCcccCC
Confidence 3344555666644421 0112442 1456789999776 788888887764
No 91
>PRK04158 transcriptional repressor CodY; Validated
Probab=22.11 E-value=4.3e+02 Score=21.42 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCceeeeeeEec
Q psy13966 9 ILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANAT 88 (174)
Q Consensus 9 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~ai 88 (174)
.|.++.|.....-+...+.+++...+|..|++.+. ..+|-++..|.+..|.. .-
T Consensus 3 ~LL~ktR~in~~lq~~~~~~v~f~~~a~~L~~~l~-------------------------~nvyii~~~GkiLGy~~-~~ 56 (256)
T PRK04158 3 SLLEKTRKINRLLQKSAGEPVDFNEMAEVLSDVID-------------------------CNVYIVSRKGKILGYSM-KE 56 (256)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhC-------------------------CCEEEEeCCCcEEEEec-cc
Confidence 46677777666666677899999999999999872 23455555555544432 23
Q ss_pred CcChHHHHHHHHhhccc
Q psy13966 89 GRSAKTVREFLEKFYKS 105 (174)
Q Consensus 89 G~gs~~a~~~Lek~~~~ 105 (174)
+..+..+..+++..+-|
T Consensus 57 ~~~~~~i~~~~~~~~fp 73 (256)
T PRK04158 57 KIENDRVEQMLEERQFP 73 (256)
T ss_pred cCccHHHHHHHHcCcCC
Confidence 44555677777644434
No 92
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.86 E-value=1.2e+02 Score=26.74 Aligned_cols=65 Identities=15% Similarity=0.023 Sum_probs=40.7
Q ss_pred eeeeEEEEeCCCCceEEEeCCCCceeeeeeEecCcChHHHHHHHHhhcc-cccccCHHHHHHHHHHHH
Q psy13966 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLAIRAL 122 (174)
Q Consensus 56 v~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~~-~~~~~s~~eai~l~~~~l 122 (174)
+-+|++|.|+.+ . +-...+.-.-..-...++|.....+...|++... ....-++++|+..+....
T Consensus 346 v~lI~GG~~Kg~-d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDKGA-D-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCCCC-C-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 678889998543 2 2222222222233577899999999999988843 112227788877776654
No 93
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.73 E-value=1.7e+02 Score=18.19 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=13.6
Q ss_pred HHHhHhhcCCCCCHHHHHHHHH
Q psy13966 18 CQSHKLTVEDPVTLEYITRYIA 39 (174)
Q Consensus 18 ~~~~~~~~~~~i~~~~la~~ls 39 (174)
...|...+|.++++.+++..+.
T Consensus 15 I~~~~~~~G~~Pt~rEIa~~~g 36 (65)
T PF01726_consen 15 IREYIEENGYPPTVREIAEALG 36 (65)
T ss_dssp HHHHHHHHSS---HHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHhC
Confidence 3445566899999999887764
No 94
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.58 E-value=3.4e+02 Score=19.96 Aligned_cols=90 Identities=10% Similarity=0.131 Sum_probs=54.9
Q ss_pred eEE-EeCCCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CC-C---cEEEEE---EE
Q psy13966 70 RLY-QTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQ-K---NLEIAV---MR 139 (174)
Q Consensus 70 ~Ly-~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~-~---~iei~i---i~ 139 (174)
.|| .+| .|.+....+-..|.+...|-+-+=-.+-... |++||.++.......+... +. + .+.+.. ..
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gk--ti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~ 120 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGK--TLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALP 120 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhccc
Confidence 444 355 7778778888888888777777766776677 9999999984444444432 11 1 111110 11
Q ss_pred cCC-CeEEcCHHHHHHHHHHhccc
Q psy13966 140 HGK-PVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 140 ~~~-~~~~l~~~ei~~~~~~~~~~ 162 (174)
+.+ ..-.|..+-++..+..+...
T Consensus 121 p~r~~C~~L~~~al~~ai~~~~~~ 144 (150)
T COG0822 121 PARIKCSLLAWDALKAAIKDYKGK 144 (150)
T ss_pred cccccchhccHHHHHHHHHHhhcc
Confidence 111 13477777788777777554
No 95
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=21.48 E-value=1.4e+02 Score=26.04 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe
Q psy13966 28 PVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFD 64 (174)
Q Consensus 28 ~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D 64 (174)
+-+++.++..++.+++.|..+|+.+ .++|.||.
T Consensus 302 ~rtPe~~a~Dl~r~i~~y~~~w~~~----~~~liGyS 334 (456)
T COG3946 302 ERTPEQIAADLSRLIRFYARRWGAK----RVLLIGYS 334 (456)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCcc----eEEEEeec
Confidence 3477999999999999998888775 56788985
No 96
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=21.05 E-value=1.6e+02 Score=16.00 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=24.3
Q ss_pred CHHHHHHH---HHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 110 TEKATIKL---AIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 110 s~~eai~l---~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
|.+|+.++ ....++...+.+ .+....+ |+...++.++|+.++.
T Consensus 3 t~~e~a~~lgis~~ti~~~~~~g--~i~~~~~---g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 3 TVEEAAEYLGVSKDTVYRLIHEG--ELPAYRV---GRHYRIPREDVDEYLE 48 (49)
T ss_pred CHHHHHHHHCCCHHHHHHHHHcC--CCCeEEe---CCeEEEeHHHHHHHHh
Confidence 55555444 344444444332 2333222 3577899999999875
No 97
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.74 E-value=1.3e+02 Score=22.07 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=38.0
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCceeeeeeEecCcChHHHHHHHHhhc
Q psy13966 24 TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY 103 (174)
Q Consensus 24 ~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~~~~~~~aiG~gs~~a~~~Lek~~ 103 (174)
..|..+....+...|.++++.........|..+ ++ +|+++ ++||+. |..+...+
T Consensus 69 v~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V--~~--v~~~~-A~lY~~-----------------S~rA~~EF---- 122 (150)
T PF14639_consen 69 VGGNSRESRKLYDDVRDIVEELDEDEQMPPIPV--VI--VDDEV-ARLYSN-----------------SKRAAEEF---- 122 (150)
T ss_dssp E--SSTHHHHHHHHHHHHHHHTTB-TTS-B--E--EE-----TT-HHHHHT-----------------SHHHHHHS----
T ss_pred EcCCChhHHHHHHHHHHHHHHhhhcccCCCceE--EE--ECcHH-HHHHhc-----------------CHHHHHHC----
Confidence 347778888888888888876542222333332 22 44333 666654 55554433
Q ss_pred ccccccCHHHHHHHHHHHH
Q psy13966 104 KSEEMTTEKATIKLAIRAL 122 (174)
Q Consensus 104 ~~~~~~s~~eai~l~~~~l 122 (174)
|+.+..+..||.+|....
T Consensus 123 -P~~p~~~R~AIslAR~lQ 140 (150)
T PF14639_consen 123 -PDYPPLLRYAISLARYLQ 140 (150)
T ss_dssp -TT--HHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHhh
Confidence 333347788888887654
No 98
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=20.09 E-value=1.3e+02 Score=21.20 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHHHHHHH---HhHhhc-----CCCCCHHHHHHHHHHHHHHh
Q psy13966 2 GLTADARILINRAQIECQ---SHKLTV-----EDPVTLEYITRYIAGLKQKY 45 (174)
Q Consensus 2 G~~~D~~~l~~~~~~~~~---~~~~~~-----~~~i~~~~la~~ls~~~~~~ 45 (174)
|+.-|+..|.+.++..+. .|++.+ ..++|.+.+|..+.+.+..+
T Consensus 46 G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~pT~Enia~~i~~~l~~~ 97 (124)
T TIGR00039 46 GMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENPTSENVAVYIFDNLKEY 97 (124)
T ss_pred eEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 556677777777776653 444433 34578999999999888543
Done!