Query psy13966
Match_columns 174
No_of_seqs 108 out of 1116
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 16:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 5.3E-39 1.8E-43 254.6 20.5 158 1-161 75-241 (243)
2 1iru_D 20S proteasome; cell cy 100.0 4.1E-39 1.4E-43 256.1 15.7 169 1-169 74-242 (248)
3 1iru_C 20S proteasome; cell cy 100.0 1.1E-38 3.8E-43 255.4 17.5 164 1-166 77-247 (261)
4 3h4p_a Proteasome subunit beta 100.0 2.8E-38 9.4E-43 247.1 19.4 164 1-171 47-214 (219)
5 1ryp_D 20S proteasome; multica 100.0 3.8E-38 1.3E-42 249.4 20.3 159 1-161 74-236 (241)
6 1iru_A 20S proteasome; cell cy 100.0 6.3E-38 2.2E-42 248.9 20.2 159 1-161 81-244 (246)
7 1ryp_C 20S proteasome; multica 100.0 1.6E-37 5.4E-42 246.2 20.7 159 1-161 77-243 (244)
8 1ryp_E 20S proteasome; multica 100.0 4.4E-38 1.5E-42 249.1 16.4 159 1-161 71-237 (242)
9 1iru_G 20S proteasome; cell cy 100.0 7.9E-38 2.7E-42 249.5 17.5 162 1-164 78-244 (254)
10 1iru_B 20S proteasome; cell cy 100.0 2.3E-37 8E-42 243.7 18.7 155 1-159 76-232 (233)
11 1j2p_A Alpha-ring, proteasome 100.0 6.9E-37 2.4E-41 242.9 20.8 157 1-161 79-238 (246)
12 3h4p_A Proteasome subunit alph 100.0 2E-38 6.9E-43 254.2 11.5 159 1-162 83-243 (264)
13 1iru_F 20S proteasome; cell cy 100.0 2E-37 6.7E-42 248.4 15.9 160 1-163 75-240 (263)
14 1yar_A Proteasome alpha subuni 100.0 4.7E-37 1.6E-41 242.0 17.9 152 1-155 79-232 (233)
15 3mi0_A Proteasome subunit alph 100.0 2E-36 6.8E-41 240.6 18.7 157 1-161 65-239 (248)
16 1j2q_H Proteasome beta subunit 100.0 3E-36 1E-40 232.5 18.7 152 1-160 46-201 (202)
17 1iru_E 20S proteasome; cell cy 100.0 1.4E-36 4.9E-41 240.4 16.2 156 1-159 79-241 (241)
18 1ryp_F 20S proteasome; multica 100.0 7.6E-37 2.6E-41 240.9 14.0 154 1-155 74-232 (233)
19 1ryp_B 20S proteasome; multica 100.0 9.8E-36 3.4E-40 236.8 19.4 157 1-159 76-250 (250)
20 3nzj_F Proteasome component C1 100.0 1E-35 3.5E-40 241.0 18.8 158 1-161 79-245 (288)
21 1yar_H Proteasome beta subunit 100.0 3.8E-35 1.3E-39 228.9 20.0 153 1-161 54-209 (217)
22 1q5q_H Proteasome beta-type su 100.0 2.1E-35 7.1E-40 233.0 17.6 160 1-164 46-222 (235)
23 1ryp_L 20S proteasome; multica 100.0 1.3E-35 4.6E-40 230.6 16.0 154 1-161 46-202 (212)
24 1iru_L 20S proteasome; cell cy 100.0 2.6E-35 9E-40 227.6 16.5 154 1-162 46-202 (204)
25 1ryp_G 20S proteasome; multica 100.0 5.2E-35 1.8E-39 231.9 18.0 155 1-159 75-238 (244)
26 1q5q_A Proteasome alpha-type s 100.0 1.3E-35 4.4E-40 237.4 14.6 164 1-168 65-244 (259)
27 1iru_H 20S proteasome; cell cy 100.0 3.3E-35 1.1E-39 227.2 12.0 151 1-158 46-200 (205)
28 1q5r_H Proteasome beta-type su 100.0 5.7E-34 1.9E-38 231.4 19.2 161 1-165 111-288 (294)
29 3nzj_K Proteasome component PR 100.0 2.2E-34 7.7E-39 233.0 15.3 154 1-161 121-277 (287)
30 1ryp_K 20S proteasome; multica 100.0 9.3E-34 3.2E-38 217.9 17.2 144 1-149 47-194 (198)
31 1ryp_N 20S proteasome; multica 100.0 3.8E-34 1.3E-38 225.5 11.8 151 1-155 54-217 (233)
32 1iru_N 20S proteasome; cell cy 100.0 5.3E-34 1.8E-38 222.5 12.0 149 1-155 54-208 (219)
33 2jay_A Proteasome; hydrolase; 100.0 5.4E-33 1.8E-37 225.4 16.5 158 1-162 103-277 (291)
34 1iru_M 20S proteasome; cell cy 100.0 1.5E-32 5E-37 213.5 17.7 138 1-145 55-204 (213)
35 3unf_H Proteasome subunit beta 100.0 4E-33 1.4E-37 219.9 14.7 145 1-154 46-193 (234)
36 1g0u_M Proteasome component PR 100.0 3.3E-33 1.1E-37 224.2 11.4 151 1-155 87-250 (266)
37 1iru_K 20S proteasome; cell cy 100.0 5.2E-32 1.8E-36 208.7 16.8 144 1-149 47-193 (201)
38 3unf_N Proteasome subunit beta 100.0 8.2E-33 2.8E-37 212.7 11.5 147 1-156 46-197 (199)
39 1ryp_I 20S proteasome; multica 100.0 8.5E-32 2.9E-36 210.7 17.1 141 1-149 46-189 (222)
40 1ryp_M 20S proteasome; multica 100.0 1.3E-31 4.4E-36 209.6 17.9 138 1-145 55-213 (222)
41 1ryp_J 20S proteasome; multica 100.0 2.2E-31 7.4E-36 205.6 17.9 137 1-143 53-194 (204)
42 1iru_J 20S proteasome; cell cy 100.0 3.5E-31 1.2E-35 204.6 18.0 136 1-142 54-194 (205)
43 1ryp_H 20S proteasome; multica 100.0 2.2E-31 7.4E-36 205.8 16.4 136 1-144 55-193 (205)
44 3nzj_H Proteasome component PU 100.0 3.7E-31 1.3E-35 211.7 17.1 141 1-149 75-218 (261)
45 1iru_I 20S proteasome; cell cy 100.0 8.7E-31 3E-35 206.5 16.4 141 1-150 46-189 (234)
46 1m4y_A ATP-dependent protease 99.9 4.4E-23 1.5E-27 155.0 13.4 119 1-138 47-171 (171)
47 1g3k_A ATP-dependent protease 99.9 8.4E-23 2.9E-27 153.9 13.0 120 1-139 47-173 (174)
48 2z3b_A ATP-dependent protease 99.9 1.5E-22 5E-27 153.5 13.8 119 1-138 53-179 (180)
49 2hc5_A ORF 99, hypothetical pr 63.7 16 0.00055 24.9 5.3 31 130-160 66-98 (117)
50 4gof_A Small glutamine-rich te 48.1 29 0.001 20.1 3.9 37 94-130 8-45 (52)
51 1hbx_G ETS-domain protein ELK- 46.0 19 0.00065 25.8 3.4 29 135-163 25-53 (157)
52 1bc8_C SAP-1, protein (SAP-1 E 44.4 10 0.00034 24.9 1.6 28 135-162 24-51 (93)
53 1yo5_C SAM pointed domain cont 40.9 37 0.0013 22.3 4.0 28 135-162 31-59 (97)
54 4eo3_A Bacterioferritin comigr 40.5 17 0.00059 28.8 2.8 46 69-116 103-149 (322)
55 1fli_A FLI-1; transcription/DN 39.4 15 0.0005 24.3 1.8 28 135-162 25-52 (98)
56 1b66_A 6-pyruvoyl tetrahydropt 37.8 39 0.0013 23.4 4.0 44 1-44 62-115 (140)
57 2gx5_A GTP-sensing transcripti 37.4 1.1E+02 0.0039 22.0 8.6 35 8-42 11-45 (170)
58 1awc_A Protein (GA binding pro 36.1 16 0.00056 24.6 1.7 28 135-162 20-47 (110)
59 2lxb_A Small glutamine-rich te 34.8 59 0.002 20.2 4.0 37 94-130 13-50 (74)
60 4asv_A Small glutamine-rich te 32.2 58 0.002 21.2 3.7 37 94-130 25-62 (92)
61 4avp_A ETS translocation varia 31.8 39 0.0013 22.6 3.0 28 135-162 31-58 (106)
62 2wuj_A Septum site-determining 30.6 20 0.00067 21.0 1.2 22 144-165 17-38 (57)
63 1ixs_A Holliday junction DNA h 29.8 32 0.0011 20.5 2.1 33 87-121 26-60 (62)
64 2b3g_B Cellular tumor antigen 29.2 23 0.0008 17.3 1.1 13 146-158 12-24 (28)
65 3ugs_B Undecaprenyl pyrophosph 28.6 1.3E+02 0.0043 22.8 5.7 48 113-162 34-81 (225)
66 1wwx_A E74-like factor 5 ESE-2 28.6 52 0.0018 22.0 3.2 28 135-162 29-57 (107)
67 2dao_A Transcription factor ET 28.5 59 0.002 22.1 3.5 29 134-162 27-56 (118)
68 3jtg_A ETS-related transcripti 27.7 86 0.003 20.7 4.1 28 135-162 25-53 (103)
69 2l60_A Peptide YY; GPCR ligand 26.9 68 0.0023 17.6 2.9 23 25-47 12-34 (41)
70 3kol_A Oxidoreductase, glyoxal 26.3 83 0.0028 20.5 4.1 19 68-86 133-151 (156)
71 1vd2_A Protein kinase C, IOTA 25.5 1.2E+02 0.0041 19.4 4.5 52 104-160 23-75 (89)
72 3oiq_B DNA polymerase alpha ca 24.5 16 0.00055 19.1 0.0 16 149-164 13-28 (36)
73 3fpw_A HBPS, extracellular HAE 23.8 2E+02 0.0067 21.2 5.9 34 109-143 65-98 (192)
74 2a2l_A Unknown; structural gen 23.6 1.9E+02 0.0063 20.0 5.7 34 109-143 12-45 (145)
75 3r8n_K 30S ribosomal protein S 21.3 1.9E+02 0.0066 19.3 7.3 72 53-140 5-77 (117)
76 2ypr_A Protein FEV; transcript 20.7 55 0.0019 21.7 2.1 28 135-162 27-54 (102)
77 2kmu_A ATP-dependent DNA helic 20.5 65 0.0022 18.8 2.2 48 2-49 1-48 (56)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=5.3e-39 Score=254.64 Aligned_cols=158 Identities=28% Similarity=0.437 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++.+|++.++++|+++.+|++|++++|.|++++++|||+|++||||||++++|+||++||+|++
T Consensus 75 aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~ 154 (243)
T 1ryp_A 75 NGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYY 154 (243)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCE
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccc-------ccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcCCCeEEcCHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKS-------EEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHGKPVEMLSVAQ 151 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~-------~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~~~~~~l~~~e 151 (174)
.+++++|+|+++..++++||+.|++ +| |++||++++++||..+.+++ +++++|++|+++| |++++++|
T Consensus 155 ~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~m--s~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l~~~e 231 (243)
T 1ryp_A 155 VGYKATATGPKQQEITTNLENHFKKSKIDHINEE--SWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAEN 231 (243)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCS--SHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEECCHHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhhcccccccCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEECCHHH
Confidence 9999999999999999999999999 88 99999999999999998875 7899999999997 99999999
Q ss_pred HHHHHHHhcc
Q psy13966 152 IEEYVNEIEK 161 (174)
Q Consensus 152 i~~~~~~~~~ 161 (174)
|+.++.++.+
T Consensus 232 i~~~~~~~~~ 241 (243)
T 1ryp_A 232 IEERLVAIAE 241 (243)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9999999854
No 2
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.1e-39 Score=256.11 Aligned_cols=169 Identities=70% Similarity=1.101 Sum_probs=157.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++.+|+++++++++++.+|+++++++|.||++++.|||+|++||||||++++|+||.+||+|++
T Consensus 74 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 153 (248)
T 1iru_D 74 AGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTY 153 (248)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCE
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999999996667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhc
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~ 160 (174)
.+++++|+|+|+..++++|++.|+++|..+++||++++++||..+.+.++++++|++|+++|.|++++++||+.++..+.
T Consensus 154 ~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~ 233 (248)
T 1iru_D 154 HAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIE 233 (248)
T ss_dssp EEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSSCEECCCHHHHHHHTTTTT
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCCcEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999987433999999999999999988778899999999998899999999999999997
Q ss_pred cchHHHHHH
Q psy13966 161 KEKEDEAEK 169 (174)
Q Consensus 161 ~~~~~~~~~ 169 (174)
.+.+++++.
T Consensus 234 ~~~~~~~~~ 242 (248)
T 1iru_D 234 KEKEENEKK 242 (248)
T ss_dssp TTTTTTTSS
T ss_pred hcchhhhhh
Confidence 766554433
No 3
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.1e-38 Score=255.37 Aligned_cols=164 Identities=32% Similarity=0.539 Sum_probs=154.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+.+++++|.||+++++|||+|++||||||++++|+||.+||+|++
T Consensus 77 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~ 156 (261)
T 1iru_C 77 AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNY 156 (261)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEE
T ss_pred eEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceE
Confidence 69999999999999999999999999999999999999999999999999999999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccc-ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC---eEEcCHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKS-EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP---VEMLSVAQIE 153 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~-~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~---~~~l~~~ei~ 153 (174)
.+++++|+|+|+..++++|++.|++ +| |++||++++++||..+.+++ +++|+|++|++++. |++++++||+
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~~~~~m--s~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~ 234 (261)
T 1iru_C 157 GGWKATCIGNNSAAAVSMLKQDYKEGEM--TLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 234 (261)
T ss_dssp EECSEEEESTTTTHHHHHHHHHCCTTCC--CHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHH
T ss_pred EeeeeEEeCcccHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHH
Confidence 9999999999999999999999999 98 99999999999999999874 68999999999874 8999999999
Q ss_pred HHHHHhccchHHH
Q psy13966 154 EYVNEIEKEKEDE 166 (174)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (174)
.++.++.++..++
T Consensus 235 ~~l~~~~~~~~~~ 247 (261)
T 1iru_C 235 QLIKKHEEEEAKA 247 (261)
T ss_dssp HHHHHHHTTTTTT
T ss_pred HHHHHHHhchhhh
Confidence 9999996544333
No 4
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-38 Score=247.11 Aligned_cols=164 Identities=21% Similarity=0.320 Sum_probs=146.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|++.++++++++.+++++++++|.| ++|||+|++||||||++++|+||.+||+|++
T Consensus 47 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~ 122 (219)
T 3h4p_a 47 AGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM 122 (219)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCE
T ss_pred eEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCce
Confidence 799999999999999999999999999999999999999999766 3689999999999998567999999999999
Q ss_pred eeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHH
Q psy13966 81 YEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~ 156 (174)
.+++ ++|+|+|+..++++||+.|+++| +++||++++++||..+.+++ +++|+|++++++| |++++++||+.++
T Consensus 123 ~~~~~~~aiG~gs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l~~~ei~~~l 199 (219)
T 3h4p_a 123 NEEKTFTATGSGSPIAYGVLEAGYDRDM--SVEEGIKLALNALKSAMERDTFSGNGISLAVITKDG-VKIFEDEEIEKIL 199 (219)
T ss_dssp EECSSEEEESTTHHHHHHHHHTSCCTTC--CHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEECCHHHHHHHH
T ss_pred EecCCEEEEcCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEcCHHHHHHHH
Confidence 9999 99999999999999999999998 99999999999999999875 6899999999986 9999999999999
Q ss_pred HHhccchHHHHHHhh
Q psy13966 157 NEIEKEKEDEAEKKK 171 (174)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (174)
.+++.+++.+++++-
T Consensus 200 ~~~~~~~~~~~~~~~ 214 (219)
T 3h4p_a 200 DSMKAKPKKKTTKRS 214 (219)
T ss_dssp HHCC-----------
T ss_pred HHhhcccccccchhh
Confidence 999998888877643
No 5
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.8e-38 Score=249.43 Aligned_cols=159 Identities=57% Similarity=0.970 Sum_probs=152.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYD-GKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~-g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+++++++|.||+++++|||+|++||||||++ ++|+||.+||+|+
T Consensus 74 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~ 153 (241)
T 1ryp_D 74 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGI 153 (241)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCC
Confidence 699999999999999999999999999999999999999999999999899999999999999974 6799999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhc---ccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHH
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFY---KSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYV 156 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~---~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~ 156 (174)
+.+++++|+|+|+..++++|++.| +++| +++||++++++||..+.+.++++++|++|+++++|++++++||+.++
T Consensus 154 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~m--s~eea~~l~~~al~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~ 231 (241)
T 1ryp_D 154 YSSWSAQTIGRNSKTVREFLEKNYDRKEPPA--TVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYV 231 (241)
T ss_dssp EEEBSEEEESTTHHHHHHHHHTTCCTTSCCC--SHHHHHHHHHHHHHHHHCSCSTTEEEEEEETTTEEEECCHHHHHHHH
T ss_pred EEEeeeEEECCCcHHHHHHHHHhhhcccCCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcEEECCHHHHHHHH
Confidence 999999999999999999999999 8998 99999999999999998866889999999999789999999999999
Q ss_pred HHhcc
Q psy13966 157 NEIEK 161 (174)
Q Consensus 157 ~~~~~ 161 (174)
.++.+
T Consensus 232 ~~~~~ 236 (241)
T 1ryp_D 232 TQIEQ 236 (241)
T ss_dssp HHHTH
T ss_pred HHHhh
Confidence 99843
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.3e-38 Score=248.85 Aligned_cols=159 Identities=30% Similarity=0.488 Sum_probs=151.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+.+++++|.|++++++|||+|++||||||++++|+||.+||+|++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 160 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE
Confidence 69999999999999999999999999999999999999999999999999999999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccc--ccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcCCC-eEEcCHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKS--EEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHGKP-VEMLSVAQIEEY 155 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~--~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~~~-~~~l~~~ei~~~ 155 (174)
.+++++|+|+|+..++++||+.|++ +| +++||++++++||..+.+++ +++++|++|+++|. |++++++||+.+
T Consensus 161 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~m--s~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~ 238 (246)
T 1iru_A 161 CGFKATAAGVKQTESTSFLEKKVKKKFDW--TFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAH 238 (246)
T ss_dssp EEBSEEEEETTHHHHHHHHHHHTTSCCCC--CHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHH
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccCCC--CHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHH
Confidence 9999999999999999999999999 88 99999999999999999865 78999999999976 899999999999
Q ss_pred HHHhcc
Q psy13966 156 VNEIEK 161 (174)
Q Consensus 156 ~~~~~~ 161 (174)
+.++.+
T Consensus 239 ~~~~~~ 244 (246)
T 1iru_A 239 LVALAE 244 (246)
T ss_dssp HHHHHT
T ss_pred HHHhhc
Confidence 999844
No 7
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.6e-37 Score=246.25 Aligned_cols=159 Identities=33% Similarity=0.534 Sum_probs=151.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++.+++++|.||+++++|||+|++||||||.+++|+||.+||+|++
T Consensus 77 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 156 (244)
T 1ryp_C 77 AGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNY 156 (244)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccE
Confidence 69999999999999999999999999999999999999999999999999999999999999995567999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc-C--CCcEEEEEEE--cCCC---eEEcCHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS-G--QKNLEIAVMR--HGKP---VEMLSVAQI 152 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~-~--~~~iei~ii~--~~~~---~~~l~~~ei 152 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.++ + +++++|++|+ +++. |++++++||
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei 234 (244)
T 1ryp_C 157 TGWKAISVGANTSAAQTLLQMDYKDDM--KVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEI 234 (244)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHH
T ss_pred EeeeEEEECCCcHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHH
Confidence 999999999999999999999999998 9999999999999999887 3 6899999999 9876 999999999
Q ss_pred HHHHHHhcc
Q psy13966 153 EEYVNEIEK 161 (174)
Q Consensus 153 ~~~~~~~~~ 161 (174)
+.++.+++.
T Consensus 235 ~~~~~~~~~ 243 (244)
T 1ryp_C 235 KDILVKTGI 243 (244)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 999998865
No 8
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.4e-38 Score=249.14 Aligned_cols=159 Identities=26% Similarity=0.497 Sum_probs=151.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEeCCCCceEEEe
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPFGISCLIGGFDYDGKPRLYQT 74 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~------~RP~gv~~il~G~D~~g~~~Ly~v 74 (174)
||+.+|++.|+++++.++.+|+++++++++++.+++.+++++|.||++++ .|||+|++||||||++++|+||.+
T Consensus 71 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~i 150 (242)
T 1ryp_E 71 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHA 150 (242)
T ss_dssp EESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEE
Confidence 69999999999999999999999999999999999999999999999988 999999999999996667999999
Q ss_pred CCCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCCeEEcCHHHH
Q psy13966 75 EPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQI 152 (174)
Q Consensus 75 d~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~~~~l~~~ei 152 (174)
||+|++.+++++|+|+|+..++++|++.|+++| |++||++++++||..+.++ ++.+++|+++++++.|++++++||
T Consensus 151 dp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei 228 (242)
T 1ryp_E 151 EPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSL--TLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKT 228 (242)
T ss_dssp CTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHH
T ss_pred CCCCCEeccCEEEECCCCHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHH
Confidence 999999999999999999999999999999998 9999999999999999885 478999999999988999999999
Q ss_pred HHHHHHhcc
Q psy13966 153 EEYVNEIEK 161 (174)
Q Consensus 153 ~~~~~~~~~ 161 (174)
+.++.++.+
T Consensus 229 ~~~~~~~~~ 237 (242)
T 1ryp_E 229 AELIKELKE 237 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999844
No 9
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.9e-38 Score=249.51 Aligned_cols=162 Identities=23% Similarity=0.325 Sum_probs=152.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++++++++|.||+++++|||+|++||||||.+++|+||++||+|++
T Consensus 78 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~ 157 (254)
T 1iru_G 78 AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVS 157 (254)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred ecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999996567999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcC--CCeEEcCHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHG--KPVEMLSVAQIEEY 155 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~--~~~~~l~~~ei~~~ 155 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.+.+ +..|+|++|+++ |.|+++++++++.+
T Consensus 158 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~ 235 (254)
T 1iru_G 158 YGYWGCAIGKARQAAKTEIEKLQMKEM--TCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEA 235 (254)
T ss_dssp EEBSEEEESTTHHHHHHHHTTSCGGGC--CHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHH
T ss_pred EeeeeEEecCccHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHH
Confidence 999999999999999999999999998 99999999999999998753 678999999987 56999999999999
Q ss_pred HHHhccchH
Q psy13966 156 VNEIEKEKE 164 (174)
Q Consensus 156 ~~~~~~~~~ 164 (174)
+..++...+
T Consensus 236 ~~~~~~~~~ 244 (254)
T 1iru_G 236 EKYAKESLK 244 (254)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhh
Confidence 999866544
No 10
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.3e-37 Score=243.74 Aligned_cols=155 Identities=34% Similarity=0.628 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++.+++++.+++++++++|.|++++++|||+|++||+|||+ ++|+||.+||+|++
T Consensus 76 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~ 154 (233)
T 1iru_B 76 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAY 154 (233)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCE
T ss_pred EEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999995 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcCCCeEEcCHHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHGKPVEMLSVAQIEEYVNE 158 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~~~~~~l~~~ei~~~~~~ 158 (174)
.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|.++++++ +++++++||+.++.+
T Consensus 155 ~~~~~~aiG~gs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~ 231 (233)
T 1iru_B 155 FAWKATAMGKNYVNGKTFLEKRYNEDL--ELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAA 231 (233)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE-EEECCHHHHHHHHTT
T ss_pred EEeeEEEECCCCHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC-EEECCHHHHHHHHHh
Confidence 999999999999999999999999998 99999999999999998875 6899999999997 999999999999876
Q ss_pred h
Q psy13966 159 I 159 (174)
Q Consensus 159 ~ 159 (174)
+
T Consensus 232 ~ 232 (233)
T 1iru_B 232 I 232 (233)
T ss_dssp C
T ss_pred c
Confidence 5
No 11
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=6.9e-37 Score=242.93 Aligned_cols=157 Identities=37% Similarity=0.634 Sum_probs=149.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++.+++++.+|+.+++++|.|+++++.|||++++|||||| ++|+||.+||+|++
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~ 156 (246)
T 1j2p_A 79 SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGAL 156 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCE
T ss_pred eEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceE
Confidence 6999999999999999999999999999999999999999999999999999999999999999 55999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEE-cCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMR-HGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~-~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.++ .+++++|++|+ ++++|++++++||+.++.
T Consensus 157 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~ 234 (246)
T 1j2p_A 157 LEYKATAIGMGRMAVTEFFEKEYRDDL--SFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVE 234 (246)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHH
T ss_pred EeeeEEEECCCcHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999885 47899999999 766799999999999999
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
++.+
T Consensus 235 ~~~~ 238 (246)
T 1j2p_A 235 RANE 238 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9843
No 12
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-38 Score=254.25 Aligned_cols=159 Identities=36% Similarity=0.635 Sum_probs=151.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|++.++.+++++.+|+.|++++|.||+++++|||+|++||||||+ ++|+||++||+|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceE
Confidence 69999999999999999999999999999999999999999999999999999999999999996 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc-CCCcEEEEEEEcC-CCeEEcCHHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS-GQKNLEIAVMRHG-KPVEMLSVAQIEEYVNE 158 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~-~~~~iei~ii~~~-~~~~~l~~~ei~~~~~~ 158 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.++ ++++++|++|+++ .+|++++++||+.++.+
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~a~~~~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~ 239 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKEYRDDI--TLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEK 239 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHHCCTTC--CSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTTTEEEECCTTTTGGGTTT
T ss_pred EecCeEEECCCHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCCcEEECCHHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999984 6789999999986 45999999999999999
Q ss_pred hccc
Q psy13966 159 IEKE 162 (174)
Q Consensus 159 ~~~~ 162 (174)
+.++
T Consensus 240 ~~~~ 243 (264)
T 3h4p_A 240 VKKK 243 (264)
T ss_dssp TTTS
T ss_pred HHHh
Confidence 9664
No 13
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2e-37 Score=248.40 Aligned_cols=160 Identities=29% Similarity=0.526 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|++.++++++++.+++++++++|.||++++.|||+|++||||||+ ++|+||.+||+|++
T Consensus 75 aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~ 153 (263)
T 1iru_F 75 AGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANY 153 (263)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCE
T ss_pred eCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999997 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccc--ccccCHHHHHHHHHHHHHHHhhcC----CCcEEEEEEEcCCCeEEcCHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKS--EEMTTEKATIKLAIRALLEVVQSG----QKNLEIAVMRHGKPVEMLSVAQIEE 154 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~--~~~~s~~eai~l~~~~l~~~~~~~----~~~iei~ii~~~~~~~~l~~~ei~~ 154 (174)
.+++++|+|+|+..++++|++.|++ +| +++||++++++||..+.+++ +++|+|++|+++++|++++++||+.
T Consensus 154 ~~~~~~aiGsgs~~a~~~Le~~~~~~~~m--s~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~ 231 (263)
T 1iru_F 154 FDCRAMSIGARSQSARTYLERHMSEFMEC--NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSP 231 (263)
T ss_dssp EEESEEEESTTHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHH
T ss_pred EEeeEEEcCcccHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHH
Confidence 9999999999999999999999998 88 99999999999999998754 5799999999996699999999999
Q ss_pred HHHHhccch
Q psy13966 155 YVNEIEKEK 163 (174)
Q Consensus 155 ~~~~~~~~~ 163 (174)
++.++...+
T Consensus 232 ~~~~~~~~~ 240 (263)
T 1iru_F 232 FLEGLEERP 240 (263)
T ss_dssp HHTTCCCCC
T ss_pred HHHHHhccc
Confidence 999997544
No 14
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.7e-37 Score=241.97 Aligned_cols=152 Identities=36% Similarity=0.597 Sum_probs=145.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+++++++|.|+++++.|||+|++||||||+ ++|+||.+||+|++
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~ 157 (233)
T 1yar_A 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTI 157 (233)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCE
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999997 55999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcCCCeEEcCHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHGKPVEMLSVAQIEEY 155 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~~~~~~l~~~ei~~~ 155 (174)
.+++++|+|+|+..++++||+.|+++| +++||++++++||..+.+++ +++++|.++++++.|++++++||+.+
T Consensus 158 ~~~~~~aiG~gs~~a~~~Le~~~~~~~--s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 158 NEYKATAIGSGKDAVVSFLEREYKENL--PEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred EeeeEEEEcCCcHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 999999999999999999999999998 99999999999999998875 78999999999987999999999865
No 15
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2e-36 Score=240.59 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=141.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcC-CCCCHHHHHHHHH-HHHHHhhhcCCCCcceeeeeEEEEeC---CCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVE-DPVTLEYITRYIA-GLKQKYTQSNGRRPFGISCLIGGFDY---DGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls-~~~~~~t~~~~~RP~gv~~il~G~D~---~g~~~Ly~vd 75 (174)
||+.+|++.|.+.++.+++.|++.++ .+++++.|+++|+ .+.|.||+ ++|||+|++||+|||+ .++|+||++|
T Consensus 65 aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~D 142 (248)
T 3mi0_A 65 AGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRIT 142 (248)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEEC
Confidence 69999999999999999999999999 9999999999999 78899997 7899999999999997 3679999999
Q ss_pred CCCceee-eeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHh-------hc--CCCcEEEEEEEcCCC--
Q psy13966 76 PSGIYYE-WKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVV-------QS--GQKNLEIAVMRHGKP-- 143 (174)
Q Consensus 76 ~~G~~~~-~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~-------~~--~~~~iei~ii~~~~~-- 143 (174)
|+|++.. ++++|+|+|+..++++||+.|+++| +++||++++++||..+. ++ .+++|+|++|++++.
T Consensus 143 p~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~m--t~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~ 220 (248)
T 3mi0_A 143 YDGSIADEPHFVVMGGTTEPIANALKESYAENA--SLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRR 220 (248)
T ss_dssp TTSCEEEESSEEEESSCHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSC
T ss_pred CCeEEeecccEEEECccHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcc
Confidence 9999995 9999999999999999999999998 99999999999999998 33 478999999999864
Q ss_pred -eEEcCHHHHHHHHHHhcc
Q psy13966 144 -VEMLSVAQIEEYVNEIEK 161 (174)
Q Consensus 144 -~~~l~~~ei~~~~~~~~~ 161 (174)
|++++++||+.++.++..
T Consensus 221 ~f~~l~~~ei~~~l~~~~~ 239 (248)
T 3mi0_A 221 AFRRITGSALQALLVDQES 239 (248)
T ss_dssp CEEECCHHHHHHTC-----
T ss_pred cEEECCHHHHHHHHHHcCC
Confidence 999999999999998844
No 16
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3e-36 Score=232.55 Aligned_cols=152 Identities=23% Similarity=0.348 Sum_probs=143.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|++++++++|++.+++++++++|.+ +.|||++++||+|||++ +|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----r~rp~~~~~lvaG~D~~-gp~Ly~id~~G~~ 120 (202)
T 1j2q_H 46 AGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY----RYFPYLVQLLIGGIDSE-GKSIYSIDPIGGA 120 (202)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEEETT-EEEEEEECTTCCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh----CCCCceEEEEEEEEeCC-CCEEEEECCCCCe
Confidence 699999999999999999999999999999999999999999764 37899999999999974 5999999999999
Q ss_pred eeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHH
Q psy13966 81 YEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~ 156 (174)
.+++ ++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|++++++| +++++++||+.++
T Consensus 121 ~~~~~~~aiG~g~~~a~~~Le~~~~~~~--s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~ 197 (202)
T 1j2q_H 121 IEEKDIVATGSGSLTAYGVLEDRFTPEI--GVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQIL 197 (202)
T ss_dssp EEESSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHHHHG
T ss_pred eecCCEEEEcCCHHHHHHHHHhhcCCCc--CHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHHHHH
Confidence 9999 99999999999999999999998 99999999999999998864 6889999999996 9999999999999
Q ss_pred HHhc
Q psy13966 157 NEIE 160 (174)
Q Consensus 157 ~~~~ 160 (174)
.+++
T Consensus 198 ~~~~ 201 (202)
T 1j2q_H 198 AKFR 201 (202)
T ss_dssp GGTT
T ss_pred HHhh
Confidence 8874
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.4e-36 Score=240.39 Aligned_cols=156 Identities=31% Similarity=0.606 Sum_probs=148.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcceeeeeEEEEeCCCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG-----RRPFGISCLIGGFDYDGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~-----~RP~gv~~il~G~D~~g~~~Ly~vd 75 (174)
||+.+|++.|+++++.++..|+++++++++++.+++.+++++|.|+++++ .|||+|++|||||| +++|+||.+|
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~id 157 (241)
T 1iru_E 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMD 157 (241)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEEC
T ss_pred eeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEEC
Confidence 69999999999999999999999999999999999999999999999888 89999999999999 5669999999
Q ss_pred CCCceeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc--CCCcEEEEEEEcCCCeEEcCHHHHH
Q psy13966 76 PSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIE 153 (174)
Q Consensus 76 ~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~--~~~~iei~ii~~~~~~~~l~~~ei~ 153 (174)
|+|++.+++++|+|+|+..++++|++.|+++| +++||++++++||..+.++ ++.+++|.++++++.|++++++||+
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~ 235 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQELYHKSM--TLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELE 235 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHH
Confidence 99999999999999999999999999999998 9999999999999999885 4789999999999889999999999
Q ss_pred HHHHHh
Q psy13966 154 EYVNEI 159 (174)
Q Consensus 154 ~~~~~~ 159 (174)
.++.++
T Consensus 236 ~~~~~~ 241 (241)
T 1iru_E 236 EVIKDI 241 (241)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 998653
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=7.6e-37 Score=240.88 Aligned_cols=154 Identities=27% Similarity=0.441 Sum_probs=144.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++||++.+++.+++++|.|||+.+.|||+|++||||||++ +|+||++||+|++
T Consensus 74 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~-gp~Ly~idp~G~~ 152 (233)
T 1ryp_F 74 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNV 152 (233)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECTTSCE
T ss_pred EechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC-cCEEEEECCCCCe
Confidence 699999999999999999999999999999999999999999999999999999999999999974 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhccc--ccccCHHHHHHHHHHHHHHHhhc---CCCcEEEEEEEcCCCeEEcCHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKS--EEMTTEKATIKLAIRALLEVVQS---GQKNLEIAVMRHGKPVEMLSVAQIEEY 155 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~--~~~~s~~eai~l~~~~l~~~~~~---~~~~iei~ii~~~~~~~~l~~~ei~~~ 155 (174)
.+++++|+|+|+..++++||+.|++ +|.+|++||++++++||..+.+. ++++++|++|+++++|++++++||+.+
T Consensus 153 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~ 232 (233)
T 1ryp_F 153 TELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY 232 (233)
T ss_dssp EEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred eeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999999999999998 54339999999999999988832 368999999999967999999999765
No 19
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9.8e-36 Score=236.80 Aligned_cols=157 Identities=29% Similarity=0.499 Sum_probs=148.1
Q ss_pred CCchHHHHHHHHHHHHHHHH-hHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQS-HKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||..+|++.|+++++.++.. |+..++.+++++.+++.+++++|.|++++++|||+|++||||||++++|+||.+||+|+
T Consensus 76 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~ 155 (250)
T 1ryp_B 76 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGS 155 (250)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSC
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCC
Confidence 69999999999999999999 99999999999999999999999999988999999999999999867799999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcEEEEEEEcC---------------C
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNLEIAVMRHG---------------K 142 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~iei~ii~~~---------------~ 142 (174)
+.+++++|+|+|+..++++|++.|+++| |++||++++++||..+.+++ +++++|++|+++ .
T Consensus 156 ~~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~ 233 (250)
T 1ryp_B 156 YFPWKATAIGKGSVAAKTFLEKRWNDEL--ELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGP 233 (250)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCC
T ss_pred EEeeceeEecCccHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCC
Confidence 9999999999999999999999999999 99999999999999998764 789999999986 2
Q ss_pred CeEEcCHHHHHHHHHHh
Q psy13966 143 PVEMLSVAQIEEYVNEI 159 (174)
Q Consensus 143 ~~~~l~~~ei~~~~~~~ 159 (174)
.|++++++||+.++.++
T Consensus 234 ~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 234 RFRKLTSQEINDRLEAL 250 (250)
T ss_dssp SEEECCHHHHHHHHTTC
T ss_pred CeEECCHHHHHHHHHhC
Confidence 49999999999998653
No 20
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1e-35 Score=241.00 Aligned_cols=158 Identities=28% Similarity=0.435 Sum_probs=145.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|++++|.++.+|++.++++|+++.+|++|++++|.||+++++|||+|++||||||.+| |+||++||+|++
T Consensus 79 aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~G-p~Ly~iDp~G~~ 157 (288)
T 3nzj_F 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYMLEPSGSY 157 (288)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTE-EEEEEECTTSCE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCC-CEEEEECCCCCE
Confidence 6999999999999999999999999999999999999999999999999999999999999999855 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhh---cccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEc-C--CCeEEcCHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKF---YKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRH-G--KPVEMLSVAQ 151 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~---~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~-~--~~~~~l~~~e 151 (174)
.+++++|+|+|+..++++|++. |+++| |++||++++++||..+.+++ +..++|+||++ + +.++.+|.++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Lek~~~~~~~~m--s~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~ 235 (288)
T 3nzj_F 158 WGYKGAATGKGRQSAKAELEKLVDHHPEGL--SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 235 (288)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHH
T ss_pred EEcCEEEEcCcHHHHHHHHHHhccccCCCC--CHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHH
Confidence 9999999999999999999999 99998 99999999999999999863 56899999999 3 4467888888
Q ss_pred HHHHHHHhcc
Q psy13966 152 IEEYVNEIEK 161 (174)
Q Consensus 152 i~~~~~~~~~ 161 (174)
+++.....++
T Consensus 236 ~~~~~~~~~~ 245 (288)
T 3nzj_F 236 LQEAIDFAQK 245 (288)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766555544
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=3.8e-35 Score=228.94 Aligned_cols=153 Identities=22% Similarity=0.340 Sum_probs=142.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++.++++++.+ +.|||++++|||||| + +|+||.+||+|++
T Consensus 54 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~ 127 (217)
T 1yar_H 54 AGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID-T-APHVFSIDAAGGS 127 (217)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES-S-SEEEEEECTTCCE
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC-C-CCEEEEECCCCCe
Confidence 699999999999999999999999999999999999999999764 379999999999999 5 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|++++++.++++++++||+.++.
T Consensus 128 ~~~~~~aiGsgs~~a~~~Le~~~~~~~--s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~ 205 (217)
T 1yar_H 128 VEDIYASTGSGSPFVYGVLESQYSEKM--TVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIR 205 (217)
T ss_dssp EEESEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHH
T ss_pred EecCEEEEcCCHHHHHHHHHhhcccCC--CHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999998764 6889999999933599999999999998
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
++..
T Consensus 206 ~~~~ 209 (217)
T 1yar_H 206 KLGL 209 (217)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8753
No 22
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.1e-35 Score=233.01 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=148.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCC-----ceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGK-----PRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~-----~~Ly~vd 75 (174)
||+.+|++.|+++++.++..|++.++.+++++.+++.|++++|.|++++ +|||+|++||||||++++ |+||.+|
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~id 124 (235)
T 1q5q_H 46 AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYD 124 (235)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEEC
Confidence 6999999999999999999999999999999999999999999988765 899999999999998766 9999999
Q ss_pred CCCceeee--eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---C--CcE-----EEEEEEcCCC
Q psy13966 76 PSGIYYEW--KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---Q--KNL-----EIAVMRHGKP 143 (174)
Q Consensus 76 ~~G~~~~~--~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~--~~i-----ei~ii~~~~~ 143 (174)
|+|++.++ +++|+|+|+..++++|++.|+++| |++||++++++||..+.+++ + ..+ +|++|+++|
T Consensus 125 p~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g- 201 (235)
T 1q5q_H 125 VVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS--DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG- 201 (235)
T ss_dssp TTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-
T ss_pred CCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-
Confidence 99999999 999999999999999999999998 99999999999999999864 2 223 999999986
Q ss_pred eEEcCHHHHHHHHHHhccchH
Q psy13966 144 VEMLSVAQIEEYVNEIEKEKE 164 (174)
Q Consensus 144 ~~~l~~~ei~~~~~~~~~~~~ 164 (174)
|++++++|++.++.++..+.+
T Consensus 202 ~~~l~~~ei~~~~~~~~~~~~ 222 (235)
T 1q5q_H 202 AVHVSEETTSELARRIVAERT 222 (235)
T ss_dssp EEECCHHHHHHHHHHHHHHHH
T ss_pred eEEeCHHHHHHHHHHHHHHHh
Confidence 999999999999999955443
No 23
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.3e-35 Score=230.56 Aligned_cols=154 Identities=14% Similarity=0.254 Sum_probs=145.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++++++++|.|++ +||++++||||||++++|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~ 121 (212)
T 1ryp_L 46 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTR 121 (212)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCcee
Confidence 79999999999999999999999999999999999999999998886 39999999999996667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++|++.|+++| |++||++++++||..+.+++ +++++|++++++| +++++++||+.++.
T Consensus 122 ~~~~~~aiGsgs~~a~~~Le~~~~~~~--s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~ 198 (212)
T 1ryp_L 122 LKGDIFCVGSGQTFAYGVLDSNYKWDL--SVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFW 198 (212)
T ss_dssp EECSEEEESTTHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHH
T ss_pred EecCCEEEcCCHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999998863 7899999999986 99999999999998
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
++.+
T Consensus 199 ~~~~ 202 (212)
T 1ryp_L 199 KVKE 202 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8844
No 24
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.6e-35 Score=227.60 Aligned_cols=154 Identities=14% Similarity=0.224 Sum_probs=144.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|+++++++++++.+++.+++++|.|++ +||+|++||||||+ ++|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~ 120 (204)
T 1iru_L 46 AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNR 120 (204)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcE
Confidence 79999999999999999999999999999999999999999987754 59999999999997 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhc---CCCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQS---GQKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~---~~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.++ .+++++|++++++| |++++++||+.++.
T Consensus 121 ~~~~~~aiG~gs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~ 197 (204)
T 1iru_L 121 ISGATFSVGSGSVYAYGVMDRGYSYDL--EVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVADLHE 197 (204)
T ss_dssp EECSEEEESTTHHHHHHHHHTTCCTTC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHHHHHH
T ss_pred EEeCCEEEEcCHHHHHHHHhccCCCCC--CHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999875 37899999999986 99999999999999
Q ss_pred Hhccc
Q psy13966 158 EIEKE 162 (174)
Q Consensus 158 ~~~~~ 162 (174)
++.++
T Consensus 198 ~~~~~ 202 (204)
T 1iru_L 198 KYSGS 202 (204)
T ss_dssp HHTC-
T ss_pred HhccC
Confidence 98653
No 25
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=5.2e-35 Score=231.93 Aligned_cols=155 Identities=26% Similarity=0.414 Sum_probs=142.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++.+|+++++++++++.+|++|++++|.||+++++|||+|++||+|||+ ++|+||.+||+|++
T Consensus 75 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~ 153 (244)
T 1ryp_G 75 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSY 153 (244)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCE
Confidence 69999999999999999999999999999999999999999999999999999999999999996 45999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhh---cccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEc---CCCeEEcCHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKF---YKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRH---GKPVEMLSVAQ 151 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~---~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~---~~~~~~l~~~e 151 (174)
.+++++|+|+|+..++++||+. |+++| |++||++++++||..+.+++ +..++|++|++ +| ++.+.|++
T Consensus 154 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~~m--s~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~ 230 (244)
T 1ryp_G 154 WGYKGAATGKGRQSAKAELEKLVDHHPEGL--SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 230 (244)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTH
T ss_pred EEeeEEEECCChHHHHHHHHHhHhhcCCCC--CHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHH
Confidence 9999999999999999999997 99998 99999999999999999864 67999999998 55 77777777
Q ss_pred HHHHHHHh
Q psy13966 152 IEEYVNEI 159 (174)
Q Consensus 152 i~~~~~~~ 159 (174)
+-+...+.
T Consensus 231 ~~~~~~~~ 238 (244)
T 1ryp_G 231 LLQEAIDF 238 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555444
No 26
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.3e-35 Score=237.37 Aligned_cols=164 Identities=16% Similarity=0.234 Sum_probs=143.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcC-CCCCHHHHHHHHHH-HHHHhhhcCCCCcceeeeeEEEEe--C-CCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVE-DPVTLEYITRYIAG-LKQKYTQSNGRRPFGISCLIGGFD--Y-DGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~-~~~~~t~~~~~RP~gv~~il~G~D--~-~g~~~Ly~vd 75 (174)
||+.+|++.|+++++.++..|++.++ .+++++.+|++|++ +.|.|+ .+.|||+|++|||||| . +++|+||++|
T Consensus 65 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~id 142 (259)
T 1q5q_A 65 VGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRIT 142 (259)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEEC
Confidence 69999999999999999999999988 49999999999999 778898 3789999999999999 3 5669999999
Q ss_pred CCCcee-eeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHh-----hc--CCCcEEEEEEEcCC---Ce
Q psy13966 76 PSGIYY-EWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVV-----QS--GQKNLEIAVMRHGK---PV 144 (174)
Q Consensus 76 ~~G~~~-~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~-----~~--~~~~iei~ii~~~~---~~ 144 (174)
|+|++. .++++|+|+++..++++|++.|+++| +++||++++++||..+. ++ ++.+|+|++|++++ +|
T Consensus 143 p~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~ 220 (259)
T 1q5q_A 143 YDGSIVDEQHFVVMGGTTEPIATAMRESYRADL--DLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAF 220 (259)
T ss_dssp TTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCE
T ss_pred CCCceeeCCCEEEECCChHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCe
Confidence 999999 78999999999999999999999998 99999999999999887 55 47899999999996 79
Q ss_pred EEcCHHHHHHHHHHhccchHHHHH
Q psy13966 145 EMLSVAQIEEYVNEIEKEKEDEAE 168 (174)
Q Consensus 145 ~~l~~~ei~~~~~~~~~~~~~~~~ 168 (174)
++++++||+.++.++.....+++.
T Consensus 221 ~~l~~~ei~~~~~~~~~~~~~~~~ 244 (259)
T 1q5q_A 221 RRIAGTALEQLVPAEPAAASESAP 244 (259)
T ss_dssp EECCHHHHHTTSCCC---------
T ss_pred EECCHHHHHHHHHHhhhccccccc
Confidence 999999999999999665555443
No 27
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=3.3e-35 Score=227.24 Aligned_cols=151 Identities=13% Similarity=0.259 Sum_probs=142.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++++++++|.|++ ||++++||||||++++|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~ 120 (205)
T 1iru_H 46 SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMM 120 (205)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcE
Confidence 69999999999999999999999999999999999999999988874 9999999999998667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC-eEEcCHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP-VEMLSVAQIEEYV 156 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~-~~~l~~~ei~~~~ 156 (174)
.+++++++|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|.+++++|. +++++++||+.++
T Consensus 121 ~~~~~~a~Gsgs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~ 198 (205)
T 1iru_H 121 VRQSFAIGGSGSSYIYGYVDATYREGM--TKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFA 198 (205)
T ss_dssp EECSEEEESGGGGGGHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCC
T ss_pred EecCEEEECCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHH
Confidence 999999999999999999999999998 99999999999999998864 78999999999975 6899999998776
Q ss_pred HH
Q psy13966 157 NE 158 (174)
Q Consensus 157 ~~ 158 (174)
++
T Consensus 199 ~~ 200 (205)
T 1iru_H 199 VA 200 (205)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 28
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5.7e-34 Score=231.37 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=147.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCC-----ceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGK-----PRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~-----~~Ly~vd 75 (174)
||+.+|++.|+++++.++.+|++.++.+++++.+++.|++++|.|+++. .|||+|++||+|||++++ |+||++|
T Consensus 111 aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iD 189 (294)
T 1q5r_H 111 AGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYD 189 (294)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEEC
T ss_pred eecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEEC
Confidence 6999999999999999999999999999999999999999999998765 899999999999998756 9999999
Q ss_pred CCCceeee--eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---C--CcE-----EEEEEEcCCC
Q psy13966 76 PSGIYYEW--KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---Q--KNL-----EIAVMRHGKP 143 (174)
Q Consensus 76 ~~G~~~~~--~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~--~~i-----ei~ii~~~~~ 143 (174)
|+|++.++ +++|+|+|+..++++|++.|+++| +++||++++++||..+.+++ + +.+ +|++|+++|
T Consensus 190 p~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~m--s~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g- 266 (294)
T 1q5r_H 190 VVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS--DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG- 266 (294)
T ss_dssp SSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-
T ss_pred CCCeEEecCCCeEEEecCcHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-
Confidence 99999999 899999999999999999999998 99999999999999999864 2 236 999999986
Q ss_pred eEEcCHHHHHHHHHHhccchHH
Q psy13966 144 VEMLSVAQIEEYVNEIEKEKED 165 (174)
Q Consensus 144 ~~~l~~~ei~~~~~~~~~~~~~ 165 (174)
+++++++||+.++.++.++.++
T Consensus 267 ~~~l~~~ei~~~l~~i~~~~~~ 288 (294)
T 1q5r_H 267 AVHVSEETTSELARRIVAERTE 288 (294)
T ss_dssp EEECCHHHHHHHHHHHCC----
T ss_pred EEEcCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999665443
No 29
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.2e-34 Score=233.04 Aligned_cols=154 Identities=14% Similarity=0.254 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+++++++++++.+++.+++++|.|++ +||++++||||||.+++|+||++||+|++
T Consensus 121 aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~ 196 (287)
T 3nzj_K 121 AGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTR 196 (287)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceE
Confidence 69999999999999999999999999999999999999999988875 49999999999997677999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYVN 157 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~~~~ 157 (174)
.+++++|+|+|+..++++|++.|+++| |++||++++++||..+.++| ++.++|++|+++| |++++++||+.++.
T Consensus 197 ~~~~~~AiGsgs~~a~~~Le~~y~~dm--s~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~~l~ 273 (287)
T 3nzj_K 197 LKGDIFCVGSGQTFAYGVLDSNYKWDL--SVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFW 273 (287)
T ss_dssp EECSEEEESTTHHHHHHHHHTSCCTTC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHH
T ss_pred EEcCeEEEecchHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999864 6899999999996 99999999999999
Q ss_pred Hhcc
Q psy13966 158 EIEK 161 (174)
Q Consensus 158 ~~~~ 161 (174)
++.+
T Consensus 274 ~~~e 277 (287)
T 3nzj_K 274 KVKE 277 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 30
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=9.3e-34 Score=217.89 Aligned_cols=144 Identities=21% Similarity=0.315 Sum_probs=134.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY-DGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~-~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|+++++++++++.+++++++.++.|++. ++||++++||+|||+ +++|+||.+||+|+
T Consensus 47 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~ 124 (198)
T 1ryp_K 47 AGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGT 124 (198)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCC
Confidence 699999999999999999999999999999999999999999887742 359999999999997 56799999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCH
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~ 149 (174)
+.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|.+++++| ++++++
T Consensus 125 ~~~~~~~aiG~g~~~a~~~Le~~~~~~~--s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~ 194 (198)
T 1ryp_K 125 KVELPYGAHGYSGFYTFSLLDHHYRPDM--TTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDD 194 (198)
T ss_dssp EEECSEEECTTHHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECC
T ss_pred EEECCEEEEcccHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecc
Confidence 9999999999999999999999999998 99999999999999998864 7899999999986 888765
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.8e-34 Score=225.46 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=141.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHh-----hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKL-----TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd 75 (174)
||..+|++.|.++++.++..|++ .++.+++++.+|+++++++ |++++++|||+|++||+|||++++|+||.+|
T Consensus 54 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id 131 (233)
T 1ryp_N 54 SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVN 131 (233)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEEC
Confidence 69999999999999999999999 9999999999999999998 6667778999999999999987679999999
Q ss_pred CCCceeeeeeEecCcChHHHHHHHHhhccc-----ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEc
Q psy13966 76 PSGIYYEWKANATGRSAKTVREFLEKFYKS-----EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEML 147 (174)
Q Consensus 76 ~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~-----~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l 147 (174)
|+|++.+++++|+|+|+..++++||+.|++ +| |++||++++++||..+.+++ +++++|.+|+++++++++
T Consensus 132 ~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~m--s~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 132 LLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKT--TVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp TTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred CCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCC--CHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 999999999999999999999999999999 88 99999999999999999864 789999999998349999
Q ss_pred CHHHHHHH
Q psy13966 148 SVAQIEEY 155 (174)
Q Consensus 148 ~~~ei~~~ 155 (174)
+++||+.+
T Consensus 210 ~~~~i~~~ 217 (233)
T 1ryp_N 210 KNLQVENM 217 (233)
T ss_dssp EEEECCSC
T ss_pred ChHhcccc
Confidence 99988766
No 32
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=5.3e-34 Score=222.55 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHh-hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKL-TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~-~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|++ .++.+++++.+++++++++ |++++++|||++++||+|||+. +|+||.+||+|+
T Consensus 54 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~-gp~Ly~id~~G~ 130 (219)
T 1iru_N 54 SGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADG-ESFLGYVDMLGV 130 (219)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETT-EEEEEEECSSCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEECC-CCEEEEECCCCC
Confidence 69999999999999999999998 9999999999999999998 5666789999999999999964 699999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhhccc--ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHH
Q psy13966 80 YYEWKANATGRSAKTVREFLEKFYKS--EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEE 154 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~~~~--~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~ 154 (174)
+.+++++|+|+|+..++++||+.|++ +| |++||++++++||..+.+++ +++++|.+|+++| +++++++||+.
T Consensus 131 ~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m--t~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~ 207 (219)
T 1iru_N 131 AYEAPSLATGYGAYLAQPLLREVLEKQPVL--SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTET 207 (219)
T ss_dssp EEECSEEECTTHHHHTHHHHHHHHTSCSCC--CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCC
T ss_pred eEECCeEEECccHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccc
Confidence 99999999999999999999999999 98 99999999999999998864 7899999999987 99999988765
Q ss_pred H
Q psy13966 155 Y 155 (174)
Q Consensus 155 ~ 155 (174)
.
T Consensus 208 ~ 208 (219)
T 1iru_N 208 N 208 (219)
T ss_dssp C
T ss_pred h
Confidence 4
No 33
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5.4e-33 Score=225.40 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=140.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCC-----ceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGK-----PRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~-----~~Ly~vd 75 (174)
||..+|++.|+++++.++..|++.++.+++++.+++.++++++.|++ ..+|||+|++||||||.+++ |+||++|
T Consensus 103 aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iD 181 (291)
T 2jay_A 103 AGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFD 181 (291)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEEC
Confidence 69999999999999999999999999999999999999999998875 45799999999999998776 9999999
Q ss_pred CCCcee--eeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC--CCcE--------EEEEEEcCCC
Q psy13966 76 PSGIYY--EWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG--QKNL--------EIAVMRHGKP 143 (174)
Q Consensus 76 ~~G~~~--~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~--~~~i--------ei~ii~~~~~ 143 (174)
|+|++. +++++|+|+|+..++++|++.|+++| +++||++++++||..+.++| .+++ +|++|+++|
T Consensus 182 p~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg- 258 (291)
T 2jay_A 182 AAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVT--DGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG- 258 (291)
T ss_dssp TTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCC--SHHHHHHHHHHHHHHC----------------CCEEEEEETTE-
T ss_pred CCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-
Confidence 999998 88999999999999999999999998 99999999999999998875 2334 699999996
Q ss_pred eEEcCHHHHHHHHHHhccc
Q psy13966 144 VEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 144 ~~~l~~~ei~~~~~~~~~~ 162 (174)
|++++++||+.++..+.++
T Consensus 259 ~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 259 AVDVPESRIAELARAIIES 277 (291)
T ss_dssp EEECCHHHHHHHHHHC---
T ss_pred eEEcCHHHHHHHHHHHHHh
Confidence 9999999999999998553
No 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.5e-32 Score=213.49 Aligned_cols=138 Identities=17% Similarity=0.313 Sum_probs=130.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+|++|++++ |+++ .|||++++||||||++|+|+||.+||+|++
T Consensus 55 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~ 130 (213)
T 1iru_M 55 SGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSY 130 (213)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCE
Confidence 699999999999999999999999999999999999999998 6654 799999999999998788999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhh---------cccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeE
Q psy13966 81 YEWKANATGRSAKTVREFLEKF---------YKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVE 145 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~---------~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~ 145 (174)
.+++++|+|+|+..++++||+. |+++| |++||++++++||..+.+++ +++++|.+|+++| ++
T Consensus 131 ~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~--s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 204 (213)
T 1iru_M 131 QRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPL--SLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IR 204 (213)
T ss_dssp EEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCC--CHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EE
T ss_pred EECCEEEEeeCHHHHHHHHhhccccccccccCCCCC--CHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eE
Confidence 9999999999999999999999 77888 99999999999999999864 7899999999986 44
No 35
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4e-33 Score=219.89 Aligned_cols=145 Identities=22% Similarity=0.362 Sum_probs=135.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.+.++++.++.+|+++++++++++.++++++++++.| .+||++++||||||++ +|+||++||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~llvaG~D~~-gp~Ly~idp~G~~ 119 (234)
T 3unf_H 46 AGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLVVGGVDLN-GPQLYEVHPHGSY 119 (234)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETT-EEEEEEECTTSCE
T ss_pred cccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc-----CCCccEEEEEEEEeCC-CCEEEEECCCCCE
Confidence 699999999999999999999999999999999999999998654 4799999999999975 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHHHHHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEE 154 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ei~~ 154 (174)
.+++++|+|+|+..++++||+.|+++| +++||++++++||..+..+| +++|+|++++++| ++++.+.+++.
T Consensus 120 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~~ 193 (234)
T 3unf_H 120 SRLPFTALGSGQGAAVALLEDRFQPNM--TLEAAQELLVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTPT 193 (234)
T ss_dssp EECSEEEEETTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECCC
T ss_pred EeccEEEEcCCchhhHHHHHhccCCCC--CHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceeccc
Confidence 999999999999999999999999998 99999999999999998763 7899999999996 99998887653
No 36
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.3e-33 Score=224.17 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=141.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHh-----hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeC
Q psy13966 1 TGLTADARILINRAQIECQSHKL-----TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTE 75 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd 75 (174)
||+.+|++.|++++|.++..|++ .++.+++++.+++++++++ |++++++|||+|++||||||++++|+||.+|
T Consensus 87 aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id 164 (266)
T 1g0u_M 87 SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVN 164 (266)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEEC
Confidence 69999999999999999999998 9999999999999999998 6667778999999999999987679999999
Q ss_pred CCCceeeeeeEecCcChHHHHHHHHhhccc-----ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEc
Q psy13966 76 PSGIYYEWKANATGRSAKTVREFLEKFYKS-----EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEML 147 (174)
Q Consensus 76 ~~G~~~~~~~~aiG~gs~~a~~~Lek~~~~-----~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l 147 (174)
|+|++.+++++|+|+|+..++++||+.|++ +| |++||++++++||..+.+++ +++|+|.+|+++.+++++
T Consensus 165 p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~m--s~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~ 242 (266)
T 1g0u_M 165 LLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKT--TVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 242 (266)
T ss_dssp TTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred CCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence 999999999999999999999999999999 88 99999999999999999864 789999999998349999
Q ss_pred CHHHHHHH
Q psy13966 148 SVAQIEEY 155 (174)
Q Consensus 148 ~~~ei~~~ 155 (174)
+++||+.+
T Consensus 243 ~~~ei~~~ 250 (266)
T 1g0u_M 243 KNLQVENM 250 (266)
T ss_dssp EEEECCCC
T ss_pred CHHHhhhh
Confidence 99888766
No 37
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=5.2e-32 Score=208.66 Aligned_cols=144 Identities=15% Similarity=0.205 Sum_probs=130.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.++++++.++..|+++++++++++.+++++++.+. |..+ ..|||++++||+|||++++|+||.+||+|++
T Consensus 47 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~-~~~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~ 124 (201)
T 1iru_K 47 VGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLA-DCLR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAAL 124 (201)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HHHT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCe
Confidence 6999999999999999999999999999999999999887652 2222 3479999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~ 149 (174)
.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +..++|.+|+++| ++++++
T Consensus 125 ~~~~~~aiGsgs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~ 193 (201)
T 1iru_K 125 AKAPFAAHGYGAFLTLSILDRYYTPTI--SRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLDN 193 (201)
T ss_dssp EECSEEEESHHHHHHHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCCC
T ss_pred EECCEEEECCcHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEeec
Confidence 999999999999999999999999998 99999999999999998864 6899999999996 776653
No 38
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=8.2e-33 Score=212.74 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=134.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|++.++++++++.++++++++++.+ .|||++++||||||++++|+||. |+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~ 118 (199)
T 3unf_N 46 SGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGM 118 (199)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCc
Confidence 799999999999999999999999999999999999999999654 46999999999999867799999 99998
Q ss_pred eeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC-eEEcCHHHHHHH
Q psy13966 81 YEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP-VEMLSVAQIEEY 155 (174)
Q Consensus 81 ~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~-~~~l~~~ei~~~ 155 (174)
..+. ++++|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|++++++|. +++++++||+.+
T Consensus 119 ~~~~~~~~~Gsgs~~a~~~Le~~~~~~m--s~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~ 196 (199)
T 3unf_N 119 LIRQPFTIGGSGSSYIYGYVDAAYKPGM--TPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKF 196 (199)
T ss_dssp CEECSEEEEEGGGGGGHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCC
T ss_pred eecCCEEEEccCHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccc
Confidence 7776 44569999999999999999999 99999999999999999874 68999999999973 889999999765
Q ss_pred H
Q psy13966 156 V 156 (174)
Q Consensus 156 ~ 156 (174)
+
T Consensus 197 ~ 197 (199)
T 3unf_N 197 Y 197 (199)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=8.5e-32 Score=210.68 Aligned_cols=141 Identities=21% Similarity=0.240 Sum_probs=130.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|+++++++++++.+++.+++.++.| .|||++++||||||++ +|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~lvaG~D~~-gp~Ly~idp~G~~ 119 (222)
T 1ryp_I 46 AGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPT-GSHLFSIHAHGST 119 (222)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETT-EEEEEEECTTSCE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-----CCCCCeeEEEEEEeCC-CCEEEEECCCCCE
Confidence 699999999999999999999999999999999999999998654 4899999999999975 5999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~ 149 (174)
.+++++|+|+|+..++++||+.|+++| +++||++++++||..+.++| +++++|++++++++++++.+
T Consensus 120 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~ 189 (222)
T 1ryp_I 120 DVGYYLSLGSGSLAAMAVLESHWKQDL--TKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN 189 (222)
T ss_dssp EECSEEEESTTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred EecCEEEECCCHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEec
Confidence 999999999999999999999999998 99999999999999998864 68999999999875776543
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.3e-31 Score=209.61 Aligned_cols=138 Identities=23% Similarity=0.350 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcC-CCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVE-DPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|+++++ ++++++.+|+.+++.+ |++ ++|||++++||||||++|+|+||.+||+|+
T Consensus 55 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~ 130 (222)
T 1ryp_M 55 NGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YGK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGS 130 (222)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTT--TTSCCCEEEEEEEECTTSCEEEEEECTTSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--Hhc--CCCCceEEEEEEEEcCCCCeEEEEECCCcC
Confidence 69999999999999999999999999 9999999999999998 543 378999999999999888899999999999
Q ss_pred eeeeeeEecCcChHHHHHHHHhh-----------------cccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEE
Q psy13966 80 YYEWKANATGRSAKTVREFLEKF-----------------YKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMR 139 (174)
Q Consensus 80 ~~~~~~~aiG~gs~~a~~~Lek~-----------------~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~ 139 (174)
+.+++++|+|+|+..++++|++. |+++| +++||++++++||..+.+++ +++|+|.+|+
T Consensus 131 ~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~--s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~ 208 (222)
T 1ryp_M 131 YEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYL--SVEEVIKLVRDSFTSATERHIQVGDGLEILIVT 208 (222)
T ss_dssp EEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCC--CHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEE
T ss_pred EEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCC--CHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEc
Confidence 99999999999999999999998 77888 99999999999999999864 7899999999
Q ss_pred cCCCeE
Q psy13966 140 HGKPVE 145 (174)
Q Consensus 140 ~~~~~~ 145 (174)
++| ++
T Consensus 209 ~~g-~~ 213 (222)
T 1ryp_M 209 KDG-VR 213 (222)
T ss_dssp TTE-EE
T ss_pred CCC-eE
Confidence 986 44
No 41
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=99.98 E-value=2.2e-31 Score=205.61 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=127.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY-DGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~-~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+++++++ |+++. .||++++||+|||+ +++|+||.+||+|+
T Consensus 53 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~ 128 (204)
T 1ryp_J 53 TGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGC 128 (204)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCC
T ss_pred eEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCC
Confidence 699999999999999999999999999999999999999999 77653 39999999999996 57799999999999
Q ss_pred eeee-eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCC
Q psy13966 80 YYEW-KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKP 143 (174)
Q Consensus 80 ~~~~-~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~ 143 (174)
+.++ .++|+|+|+..++++||+.|+++| +++||++++++||..+.+++ +++++|.+|+++|.
T Consensus 129 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 194 (204)
T 1ryp_J 129 IDEAKDFIVSGTASDQLFGMCESLYEPNL--EPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEV 194 (204)
T ss_dssp EECCSSEEEEETTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCE
T ss_pred ccccCceeEeccCHHHHHHHHhhhcCCCc--CHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCE
Confidence 9776 569999999999999999999998 99999999999999999864 78999999999873
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=99.98 E-value=3.5e-31 Score=204.61 Aligned_cols=136 Identities=16% Similarity=0.230 Sum_probs=126.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCceEEEeCCCCc
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDY-DGKPRLYQTEPSGI 79 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~-~g~~~Ly~vd~~G~ 79 (174)
||+.+|++.|+++++.++..|+++++++++++.+|+.+++++ |+++ ..||++++||+|||+ +++|+||.+||+|+
T Consensus 54 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~ 129 (205)
T 1iru_J 54 AGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGC 129 (205)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCC
Confidence 799999999999999999999999999999999999999999 7765 349999999999996 56799999999999
Q ss_pred eeee-eeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCC
Q psy13966 80 YYEW-KANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGK 142 (174)
Q Consensus 80 ~~~~-~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~ 142 (174)
+.++ .++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|.+|+++|
T Consensus 130 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 130 PMVTDDFVVSGTCAEQMYGMCESLWEPNM--DPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp EEECSSEEEEETTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred ccccCCeeEeeeCHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9776 569999999999999999999998 99999999999999999874 6899999999987
No 43
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=99.98 E-value=2.2e-31 Score=205.82 Aligned_cols=136 Identities=12% Similarity=0.189 Sum_probs=128.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++.+|++.+++ ++++.+++++++++|.|+++ |++++||+|||++++|+||.+||+|++
T Consensus 55 aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~ 128 (205)
T 1ryp_H 55 SGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSV 128 (205)
T ss_dssp EEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccE
Confidence 699999999999999999999999999 99999999999999988752 999999999997667999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCe
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPV 144 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~ 144 (174)
.+++++|+|+|+..++++||+.|+++| |++||++++++||..+.+++ +++++|.+++++|..
T Consensus 129 ~~~~~~aiGsgs~~a~~~Le~~~~~~~--s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~ 193 (205)
T 1ryp_H 129 HKLPYAIAGSGSTFIYGYCDKNFRENM--SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVE 193 (205)
T ss_dssp EEESEEEESGGGGGGHHHHHHHCCTTC--CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEE
T ss_pred EecCEEEEEecHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEE
Confidence 999999999999999999999999998 99999999999999998864 789999999999743
No 44
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=99.97 E-value=3.7e-31 Score=211.68 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=130.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|+++++.++..|++.++++++++.+++.+++.++.| .|||++++||||||++| |+||++||+|++
T Consensus 75 aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~G-p~Ly~iDp~G~~ 148 (261)
T 3nzj_H 75 AGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTG-SHLFSIHAHGST 148 (261)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTE-EEEEEECTTSCE
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCC-CEEEEECCCccE
Confidence 699999999999999999999999999999999999999988543 47999999999999754 999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSV 149 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~ 149 (174)
.+++++|+|+|+..++++||+.|+++| +++||++++++||..+..+| +++|+|++|+++|.++++.+
T Consensus 149 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~ 218 (261)
T 3nzj_H 149 DVGYYLSLGSGSLAAMAVLESHWKQDL--TKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN 218 (261)
T ss_dssp EECSEEEESTTHHHHHHHHHHHCCSSC--CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred EecCeEEeccchHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEecc
Confidence 999999999999999999999999999 99999999999999998764 68999999999986665543
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=99.97 E-value=8.7e-31 Score=206.51 Aligned_cols=141 Identities=18% Similarity=0.305 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+++++++++++.+++.+++.++.| .+||++++||||||++ +|+||.+||+|++
T Consensus 46 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~~~~v~llvaG~D~~-gp~Ly~idp~G~~ 119 (234)
T 1iru_I 46 AGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLGGVDVT-GPHLYSIYPHGST 119 (234)
T ss_dssp EESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEECSS-CEEEEEECTTSCE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-----CCCCceeEEEEEEcCC-CCEEEEECCCCCE
Confidence 699999999999999999999999999999999999999998654 3699999999999975 4999999999999
Q ss_pred eeeeeEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEEcCCCeEEcCHH
Q psy13966 81 YEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVA 150 (174)
Q Consensus 81 ~~~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~~~~~~~~l~~~ 150 (174)
.+++++|+|+|+..++++|++.|+++| +++||++++++||..+..++ +++++|.+++++| ++.+.+.
T Consensus 120 ~~~~~~aiGsgs~~a~~~Le~~~~~~m--s~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~~ 189 (234)
T 1iru_I 120 DKLPYVTMGSGSLAAMAVFEDKFRPDM--EEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPY 189 (234)
T ss_dssp EECSEEEESTTHHHHHHHHHHSCCTTC--CHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEE
T ss_pred EecCEEEECCchHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEcce
Confidence 999999999999999999999999998 99999999999999988864 6899999999986 8766643
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.90 E-value=4.4e-23 Score=155.00 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+.+ +.+.++++.+.++++...|||++++|++ | +|+||.+||+|++
T Consensus 47 aG~~aD~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~ 112 (171)
T 1m4y_A 47 AGSVADAMTLFDRFEAKLREWGGN---------LTKAAVELAKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEV 112 (171)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCE
T ss_pred CccHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCE
Confidence 699999999999999999998854 2444445555566666788999999988 5 5999999999999
Q ss_pred eeee--eEecCcChHHHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEE
Q psy13966 81 YEWK--ANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVM 138 (174)
Q Consensus 81 ~~~~--~~aiG~gs~~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii 138 (174)
.+++ +.|+|+|++.++++||+.|+ ++| |. .+++.+||..+.++| +++++|.++
T Consensus 113 ~~~~~~~~a~Gsgs~~a~~~le~~~~~~~m--s~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 113 IQPDDDAAAIGSGGPYALAAAKALLRNTDL--SA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp ECCSSSEEEESTTHHHHHHHHHHHHHHCCC--CH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred EecCCCEEEECCcHHHHHHHHHHhcccCCC--CH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 9998 99999999999999999999 898 76 678999999998864 678888653
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.89 E-value=8.4e-23 Score=153.94 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=103.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||+.+|++.|.++++.++..|+. + ++..++.+.+.++++...||+ +++++|+| +|+||++||+|++
T Consensus 47 aG~~aD~~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~ 112 (174)
T 1g3k_A 47 AGGTADAFTLFELFERKLEMHQG------H---LLKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDV 112 (174)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTT------C---HHHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEE
T ss_pred CccHHHHHHHHHHHHHHHHHhcC------c---HHHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcE
Confidence 69999999999999999999986 2 345556666667777778886 46778887 4999999999999
Q ss_pred eeee---eEecCcChHHHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEEE
Q psy13966 81 YEWK---ANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVMR 139 (174)
Q Consensus 81 ~~~~---~~aiG~gs~~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii~ 139 (174)
.+++ ++|+|+|++.++++||+.|+ ++| |.+ +++.+||..+.+++ +++++|.+|+
T Consensus 113 ~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~m--t~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 113 VQPEEDQILAIGSGGNYALSAARALVENTEL--SAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ECCCTTCEEEESTTHHHHHHHHHHHHHHCCC--CHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred EecCCCcEEEEcccHHHHHHHHHHhcccCCC--CHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 9988 99999999999999999999 998 854 78999999888864 7899999885
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.89 E-value=1.5e-22 Score=153.54 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=103.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCceEEEeCCCCce
Q psy13966 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGKPRLYQTEPSGIY 80 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~~~RP~gv~~il~G~D~~g~~~Ly~vd~~G~~ 80 (174)
||..+|++.|.++++.++..|+ + .+++.++.+.+.++++...|||++++||+ | +|+||.+||+|++
T Consensus 53 aG~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~ 118 (180)
T 2z3b_A 53 AGSVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEV 118 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCE
T ss_pred CchHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcE
Confidence 7999999999999999999988 3 23444556667777888899999999999 4 4999999999999
Q ss_pred eee--eeEecCcChHHHHHHHHhhccc---ccccCHHHHHHHHHHHHHHHhhcC---CCcEEEEEE
Q psy13966 81 YEW--KANATGRSAKTVREFLEKFYKS---EEMTTEKATIKLAIRALLEVVQSG---QKNLEIAVM 138 (174)
Q Consensus 81 ~~~--~~~aiG~gs~~a~~~Lek~~~~---~~~~s~~eai~l~~~~l~~~~~~~---~~~iei~ii 138 (174)
.++ +++|+|+|+..++++||+.|++ +| |.+|+ +.+||..+.++| +++++|.+|
T Consensus 119 ~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~m--t~eel---~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 119 IEPDDGILAIGSGGNYALAAGRALKKHAGESM--SASEI---ARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp ECCSSSEEEESTTHHHHHHHHHHHHHHHGGGC--CHHHH---HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred EEeCCCEEEECCCHHHHHHHHHHhhhccCCCC--CHHHH---HHHHHHHHHHhcCccCCeEEEEEE
Confidence 984 9999999999999999999998 88 99994 679999888864 788998887
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=63.66 E-value=16 Score=24.86 Aligned_cols=31 Identities=3% Similarity=0.159 Sum_probs=26.5
Q ss_pred CCcEEEEEEEcCCC--eEEcCHHHHHHHHHHhc
Q psy13966 130 QKNLEIAVMRHGKP--VEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 130 ~~~iei~ii~~~~~--~~~l~~~ei~~~~~~~~ 160 (174)
.+.+.|.+++++.+ +|.+||+++-.+..++.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 46899999999855 79999999999888874
No 50
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=48.05 E-value=29 Score=20.08 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=24.9
Q ss_pred HHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcCC
Q psy13966 94 TVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSGQ 130 (174)
Q Consensus 94 ~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~~ 130 (174)
.+..+|..... ..+.-+..|.++.|++||..+++.+.
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 34455655543 22323567899999999999998653
No 51
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=45.95 E-value=19 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=24.1
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccch
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKEK 163 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~~ 163 (174)
|.|.+++|.|+.+++++|..++..-+..+
T Consensus 25 I~Wt~~~geFklvdpe~VArLWG~rKnkp 53 (157)
T 1hbx_G 25 ICWTSNDGQFKLLQAEEVARLWGIRKNKP 53 (157)
T ss_dssp EEECSSSSCEEETTHHHHHHHHHHGGGCT
T ss_pred eEEeCCCCEEEecCcHHHHHHHHhccCCC
Confidence 66888888999999999999988765443
No 52
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=44.39 E-value=10 Score=24.90 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=23.0
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+.+++|.|+.++|++|..++..-+..
T Consensus 24 I~W~~~~g~Fkl~d~~~VArlWG~rKnk 51 (93)
T 1bc8_C 24 ICWTSNDGQFKLLQAEEVARLWGIRKNK 51 (93)
T ss_dssp SEECSSSSEEECTTHHHHHHHHHHHHTC
T ss_pred eEEeCCCCEEEecCHHHHHHHHHhcCCC
Confidence 5677888889999999999998876543
No 53
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=40.92 E-value=37 Score=22.28 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.4
Q ss_pred EEEEEc-CCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRH-GKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~-~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+.++ +|.|+.++|++|..++..-+..
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rKnk 59 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRKNR 59 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHHTC
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcCCC
Confidence 668876 5779999999999998866543
No 54
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=40.52 E-value=17 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=34.7
Q ss_pred ceEEEeCCCCceee-eeeEecCcChHHHHHHHHhhcccccccCHHHHHH
Q psy13966 69 PRLYQTEPSGIYYE-WKANATGRSAKTVREFLEKFYKSEEMTTEKATIK 116 (174)
Q Consensus 69 ~~Ly~vd~~G~~~~-~~~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~ 116 (174)
+..|-+|+.|.+.. |+..-.+.+...+...|++....+| ++.++|+
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~--~~~~~I~ 149 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDL--SLNKHIE 149 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhh--HHHHHHH
Confidence 57899999999876 4556678888888899988876666 5555543
No 55
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=39.38 E-value=15 Score=24.34 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=22.8
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+.+.+|.|+.++|++|..++..-+..
T Consensus 25 I~W~~~~g~Fklvd~e~VArlWG~rK~k 52 (98)
T 1fli_A 25 ITWEGTNGEFKMTDPDEVARRWGERKSK 52 (98)
T ss_dssp EECTTSSSSCEECCHHHHHHHHHHHTCC
T ss_pred eEEeCCCCEEEEcCHHHHHHHHHhccCC
Confidence 5667777889999999999998876543
No 56
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=37.84 E-value=39 Score=23.43 Aligned_cols=44 Identities=23% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCchHHHHHHHHHHHH---HHHHhHhhc-------CCCCCHHHHHHHHHHHHHH
Q psy13966 1 TGLTADARILINRAQI---ECQSHKLTV-------EDPVTLEYITRYIAGLKQK 44 (174)
Q Consensus 1 sG~~~D~~~l~~~~~~---~~~~~~~~~-------~~~i~~~~la~~ls~~~~~ 44 (174)
+|+.-|+..|.+.++. ....|++.+ +..+|.+.||..|-+.+..
T Consensus 62 ~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~ 115 (140)
T 1b66_A 62 TGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQR 115 (140)
T ss_dssp TCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHH
Confidence 3666777777777776 234454444 3578999999999999854
No 57
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=37.39 E-value=1.1e+02 Score=21.97 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHH
Q psy13966 8 RILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 42 (174)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~ 42 (174)
.+|.++.|.....-+...+.+++...+|..|++.+
T Consensus 11 ~~LL~KtRkIN~lLq~~~~~~v~f~eia~vLs~vL 45 (170)
T 2gx5_A 11 MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVI 45 (170)
T ss_dssp HHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 36788888877666667789999999999999997
No 58
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=36.13 E-value=16 Score=24.63 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=23.4
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+.+++|.|+.++|++|..++..-+..
T Consensus 20 I~W~~~~geFkl~d~e~VArlWG~rKnk 47 (110)
T 1awc_A 20 ISWVGDEGEFKLNQPELVAQKWGQRKNK 47 (110)
T ss_dssp SEECSSSSEEECSSHHHHHHHHHHHHTC
T ss_pred eEEeCCCCEEEecCHHHHHHHHHHccCC
Confidence 6788888889999999999998866543
No 59
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=34.84 E-value=59 Score=20.22 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcCC
Q psy13966 94 TVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSGQ 130 (174)
Q Consensus 94 ~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~~ 130 (174)
.+..+|..... ..+.-+..|.++.|++||..+++.+.
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455555432 23333567899999999999998654
No 60
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=32.21 E-value=58 Score=21.17 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=24.7
Q ss_pred HHHHHHHhhcc-cccccCHHHHHHHHHHHHHHHhhcCC
Q psy13966 94 TVREFLEKFYK-SEEMTTEKATIKLAIRALLEVVQSGQ 130 (174)
Q Consensus 94 ~a~~~Lek~~~-~~~~~s~~eai~l~~~~l~~~~~~~~ 130 (174)
.+..+|..... ..+.-+..|.++.|++||..+++.+.
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~ 62 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER 62 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455554432 23333567899999999999998654
No 61
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=31.77 E-value=39 Score=22.57 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=22.8
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.++++++.|+.+++++|..++..-+..
T Consensus 31 I~W~~~~~~Fkl~dp~~VA~lWG~rKnk 58 (106)
T 4avp_A 31 IAWTGRGMEFKLIEPEEVARRWGIQKNR 58 (106)
T ss_dssp EEECSSTTEEEESSHHHHHHHHHHHTTC
T ss_pred CcccCCCceEEecCHHHHHHHHHhccCC
Confidence 4577888889999999999998876543
No 62
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.63 E-value=20 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.5
Q ss_pred eEEcCHHHHHHHHHHhccchHH
Q psy13966 144 VEMLSVAQIEEYVNEIEKEKED 165 (174)
Q Consensus 144 ~~~l~~~ei~~~~~~~~~~~~~ 165 (174)
++=++++||+.||+.+...-++
T Consensus 17 ~rGY~~~EVD~FLd~v~~~~~~ 38 (57)
T 2wuj_A 17 FRGYDEDEVNEFLAQVRKDYEI 38 (57)
T ss_dssp TTEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHH
Confidence 5568999999999999765443
No 63
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=29.77 E-value=32 Score=20.47 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred ecCcChHHHHHHHHhhc--ccccccCHHHHHHHHHHH
Q psy13966 87 ATGRSAKTVREFLEKFY--KSEEMTTEKATIKLAIRA 121 (174)
Q Consensus 87 aiG~gs~~a~~~Lek~~--~~~~~~s~~eai~l~~~~ 121 (174)
+.|+....+...+.+.. .+++ +.++.|..+++.
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~--~~e~lIr~ALk~ 60 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKA--RAQDLIKEALKR 60 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTC--CHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHH
Confidence 46888888888888764 3355 888887777653
No 64
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=29.24 E-value=23 Score=17.30 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=10.3
Q ss_pred EcCHHHHHHHHHH
Q psy13966 146 MLSVAQIEEYVNE 158 (174)
Q Consensus 146 ~l~~~ei~~~~~~ 158 (174)
+++|++|++++.+
T Consensus 12 mlspddi~qw~s~ 24 (28)
T 2b3g_B 12 MLSPDDIEQWFTE 24 (28)
T ss_dssp GCCHHHHHHHHHC
T ss_pred hcChHHHHHHhhc
Confidence 6789999988753
No 65
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=28.64 E-value=1.3e+02 Score=22.82 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 113 ATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 113 eai~l~~~~l~~~~~~~~~~iei~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
.+++.+.+++..+.+.+-..+.++.++.+. |++ |++||+.+..=+...
T Consensus 34 ~G~~~~~~i~~~c~~lGI~~lTlYaFStEN-w~R-p~~EV~~Lm~L~~~~ 81 (225)
T 3ugs_B 34 QGVKTMQKLMEVCMEENISNLSLFAFSTEN-WKR-PKDEIDFIFELLDRC 81 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEESGG-GGS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEcccc-cCC-CHHHHHHHHHHHHHH
Confidence 455666666666666777899999999985 765 889998876555443
No 66
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=28.61 E-value=52 Score=22.01 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=22.6
Q ss_pred EEEEEc-CCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRH-GKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~-~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+.++ +|.|+.++|++|..++..-+..
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~rKnk 57 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQRKKN 57 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHHHTC
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhcCCC
Confidence 678886 5789999999999998766443
No 67
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.53 E-value=59 Score=22.12 Aligned_cols=29 Identities=7% Similarity=-0.005 Sum_probs=23.4
Q ss_pred EEEEEEcC-CCeEEcCHHHHHHHHHHhccc
Q psy13966 134 EIAVMRHG-KPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 134 ei~ii~~~-~~~~~l~~~ei~~~~~~~~~~ 162 (174)
-|.+.+++ |.|+.++|++|..++..-+..
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~rKnk 56 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGNHKNR 56 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHHHTTC
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHhccCC
Confidence 37888876 579999999999998866543
No 68
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=27.68 E-value=86 Score=20.71 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=22.8
Q ss_pred EEEEEc-CCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRH-GKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~-~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.++++ +|.|+.++|++|..+...-+..
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rKnk 53 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKKKN 53 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHTTC
T ss_pred cccccCCCceEEecCHHHHHHHHHhccCC
Confidence 788887 4779999999999998776443
No 69
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=26.92 E-value=68 Score=17.55 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhh
Q psy13966 25 VEDPVTLEYITRYIAGLKQKYTQ 47 (174)
Q Consensus 25 ~~~~i~~~~la~~ls~~~~~~t~ 47 (174)
-|..-+++.++++.+.+-|-.+.
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinl 34 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNL 34 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778999999999998875543
No 70
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=26.25 E-value=83 Score=20.55 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.1
Q ss_pred CceEEEeCCCCceeeeeeE
Q psy13966 68 KPRLYQTEPSGIYYEWKAN 86 (174)
Q Consensus 68 ~~~Ly~vd~~G~~~~~~~~ 86 (174)
+..+|..||.|+..+.-..
T Consensus 133 g~~~~~~DPdG~~iel~~~ 151 (156)
T 3kol_A 133 GRGVYFYDPDGFMIEIRCD 151 (156)
T ss_dssp CEEEEEECTTSCEEEEEEC
T ss_pred ccEEEEECCCCCEEEEEec
Confidence 3589999999998876543
No 71
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.51 E-value=1.2e+02 Score=19.36 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=38.2
Q ss_pred ccccccCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC-eEEcCHHHHHHHHHHhc
Q psy13966 104 KSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP-VEMLSVAQIEEYVNEIE 160 (174)
Q Consensus 104 ~~~~~~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~~~~~~ 160 (174)
.+++ +.++..+.+...+... .+..+.+.+++.+|. +.+.+.+|++..+.-++
T Consensus 23 ~~~i--~~~~L~~kv~~~~~~~---~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 23 EPSI--SFEGLCNEVRDMCSFD---NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp CTTC--CHHHHHHHHHHHTTCC---SSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCC--CHHHHHHHHHHHhCCC---CCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 3445 8888877776655421 256799999999866 68999999999987553
No 72
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=24.54 E-value=16 Score=19.13 Aligned_cols=16 Identities=6% Similarity=0.420 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhccchH
Q psy13966 149 VAQIEEYVNEIEKEKE 164 (174)
Q Consensus 149 ~~ei~~~~~~~~~~~~ 164 (174)
.++|+.+++.++.+|.
T Consensus 13 ~nDvq~Ll~DVENSP~ 28 (36)
T 3oiq_B 13 ANDVQDLLDDVENSPV 28 (36)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred HhhHHHHHHHhhcCch
Confidence 4678889999988887
No 73
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=23.81 E-value=2e+02 Score=21.16 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC
Q psy13966 109 TTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP 143 (174)
Q Consensus 109 ~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~ 143 (174)
+|++++.+++..++..+.+.+- .|.|.|++..|.
T Consensus 65 ltl~~A~~l~~aA~~~A~~~g~-pV~IaVvD~~G~ 98 (192)
T 3fpw_A 65 LTLEAATKAARAAVEAAEKDGR-HVSVAVVDRNGN 98 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC-CCEEEEEETTSC
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CEEEEEEeCCCC
Confidence 4999999999999999988754 789999988766
No 74
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=23.56 E-value=1.9e+02 Score=20.00 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.7
Q ss_pred cCHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCCC
Q psy13966 109 TTEKATIKLAIRALLEVVQSGQKNLEIAVMRHGKP 143 (174)
Q Consensus 109 ~s~~eai~l~~~~l~~~~~~~~~~iei~ii~~~~~ 143 (174)
+|+++|.+++..++..+.+.+ ..|.|.|++..|.
T Consensus 12 lt~~~A~~l~~aa~~~A~~~g-~~v~IaVvD~~G~ 45 (145)
T 2a2l_A 12 ITLAAAQQMAAAVEKKATEIN-VAVVFSVVDRGGN 45 (145)
T ss_dssp ECHHHHHHHHHHHHHHHHHTT-CCCEEEEEETTSC
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CCEEEEEEECCCC
Confidence 499999999999999888764 4799999998765
No 75
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=21.29 E-value=1.9e+02 Score=19.34 Aligned_cols=72 Identities=25% Similarity=0.288 Sum_probs=47.8
Q ss_pred cceeeeeEEEEeCCCCceEEEeCCCCceeeee-eEecCcChHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHhhcCCC
Q psy13966 53 PFGISCLIGGFDYDGKPRLYQTEPSGIYYEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQK 131 (174)
Q Consensus 53 P~gv~~il~G~D~~g~~~Ly~vd~~G~~~~~~-~~aiG~gs~~a~~~Lek~~~~~~~~s~~eai~l~~~~l~~~~~~~~~ 131 (174)
|+|+.=|.+.+++ -.+.-+|+.|....|. +.+.|.... + .. |..-|...+.++...+.+.+-.
T Consensus 5 ~~gi~hI~as~NN---TivtiTD~~G~~i~~~S~G~~gfKg~-------r----k~--tp~AA~~aa~~~~~~~~~~Gi~ 68 (117)
T 3r8n_K 5 SDGVAHIHASFNN---TIVTITDRQGNALGWATAGGSGFRGS-------R----KS--TPFAAQVAAERCADAVKEYGIK 68 (117)
T ss_dssp CEEEEEEEECSSC---EEEEEECTTSCCSEEEETGGGSCCGG-------G----GS--SHHHHHHHHHHHHHHHTTSCCC
T ss_pred ceeEEEEEcccCC---EEEEEEcCCCCEEEEEcCCccccCCC-------c----cC--CHHHHHHHHHHHHHHHHHhCCc
Confidence 6788888888853 7999999999976653 233454432 1 11 5555656667777777777767
Q ss_pred cEEEEEEEc
Q psy13966 132 NLEIAVMRH 140 (174)
Q Consensus 132 ~iei~ii~~ 140 (174)
.++|.+=..
T Consensus 69 ~v~v~vkG~ 77 (117)
T 3r8n_K 69 NLEVMVKGP 77 (117)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 788866443
No 76
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=20.67 E-value=55 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=21.7
Q ss_pred EEEEEcCCCeEEcCHHHHHHHHHHhccc
Q psy13966 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKE 162 (174)
Q Consensus 135 i~ii~~~~~~~~l~~~ei~~~~~~~~~~ 162 (174)
|.+...+|.|+.++|++|..++..-+..
T Consensus 27 I~W~~~~g~Fkl~dp~~VArlWG~rKnk 54 (102)
T 2ypr_A 27 IAWEGGHGEFKLTDPDEVARRWGERKSK 54 (102)
T ss_dssp CEECSSTTEEECSSHHHHHHHHHHHTTC
T ss_pred ccccCCCceEEecChHHHHHHHHHhcCC
Confidence 3465667889999999999998876543
No 77
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=20.51 E-value=65 Score=18.85 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHhhhcC
Q psy13966 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 49 (174)
Q Consensus 2 G~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~t~~~ 49 (174)
|.......|-..++.-=..+...+|+.++-+.+-..-..+.+.|.+|+
T Consensus 1 ~~me~~~~lk~~LK~WE~~F~~~~GRkP~k~DIk~~p~~I~~~YK~Y~ 48 (56)
T 2kmu_A 1 GSMERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYR 48 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHTTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHcCHHHHHHHHHHHH
Confidence 344455555555555445566678999887666554443555555543
Done!