RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13966
(174 letters)
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 240 bits (616), Expect = 1e-81
Identities = 121/173 (69%), Positives = 147/173 (84%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADARI+INRA++ECQSH+LTVEDPVT+EYITRYIA LKQ+YTQSNGRRPFGIS LI
Sbjct: 74 AGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALI 133
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
GFD+DG PRLYQT+PSG Y+ WKANA GR AK+VREFLEK Y E + T+ TIKL I+
Sbjct: 134 VGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIK 193
Query: 121 ALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQK 173
ALLEVVQSG KN+E+AVMR + +++L+ +IE+YV EIEKEKE+ +KK++K
Sbjct: 194 ALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQKK 246
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 225 bits (576), Expect = 8e-76
Identities = 95/169 (56%), Positives = 129/169 (76%), Gaps = 4/169 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL AD+RILI +A++E QSH+LT+EDPVT+EY+TRY+AG++Q+YTQS G RPFG+S LI
Sbjct: 74 SGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLI 133
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK--SEEMTTEKATIKL 117
GFD D +P+LYQTEPSGIY W A GR++KTVREFLEK Y T E+ +KL
Sbjct: 134 AGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEEC-VKL 192
Query: 118 AIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
+R+LLEVVQ+G KN+EI V++ + LS +I +YV +IE+EK+++
Sbjct: 193 TVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQ 241
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 220 bits (564), Expect = 1e-73
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADAR+L N + EC + + P+ + + I Q TQ GRRP+G+ LI
Sbjct: 75 AGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLI 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D G P ++QT PS Y++ +A + G +++ R +LE+ +K +R
Sbjct: 135 AGYDDMG-PHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLR 193
Query: 121 ALLEVVQSGQ----KNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
AL E + + Q KN+ I ++ + + ++ +E+ + +A+ +
Sbjct: 194 ALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQRKAQPAQ 248
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 214 bits (548), Expect = 3e-71
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 7/180 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G+T+DA +L N ++ Q + L ++P+ E + + +KQ YTQ G+RPFG+S L
Sbjct: 77 AGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLY 136
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D +LYQ++PSG Y WKA G ++ L++ YK EMT + A + LAI+
Sbjct: 137 IGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSA-LALAIK 195
Query: 121 AL---LEVVQSGQKNLEIAVMRHGKP---VEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
L ++V + + +EIA + + +L ++E+ + + E+E+ +KK+K+
Sbjct: 196 VLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKE 255
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 211 bits (538), Expect = 1e-69
Identities = 60/176 (34%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA++E Q ++LT + +++E + + I +KQ YTQ G RPFG+S LI
Sbjct: 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLI 142
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + RL++T+PSG E+KA A G V E LEK Y+ +++T ++ ++LAI
Sbjct: 143 AGIDKNE-ARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR-DDITLDEG-LELAIT 199
Query: 121 ALLEVVQS-GQKNLEIAVMRH-GKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
AL + + +N+++ ++ + + V +I++ + +++K+ +E +K+++ +
Sbjct: 200 ALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKLNEENKKEEENR 255
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 206 bits (526), Expect = 4e-68
Identities = 48/167 (28%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
TG+TAD+R + RA+ E + K + ++ + + IA + Q YTQ+ RP G ++
Sbjct: 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL 140
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D + P++Y+ +P+G Y +KA A G FLEK K + T + T++ AI
Sbjct: 141 IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAIT 200
Query: 121 ALLEVVQSG--QKNLEIAVMRHGKP-VEMLSVAQIEEYVNEIEKEKE 164
L V+ +E+ V+ P +L+ A+I+ ++ + E++
Sbjct: 201 CLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA-ERD 246
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 205 bits (524), Expect = 6e-68
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+L++ A+I Q K+T V +E + + +A Q+YTQ G RP+G+S +
Sbjct: 79 SGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D G PRL+ +P+G E+KA A G V FLE+ YK E + ++A + L I+
Sbjct: 139 AGIDQIG-PRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK-ENLPEKEA-VTLGIK 195
Query: 121 ALLEVVQSG--QKNLEIAVMRHGKPVEMLSVAQIEEYV 156
AL ++ G K EIA + G + ++++++
Sbjct: 196 ALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 205 bits (523), Expect = 1e-67
Identities = 42/174 (24%), Positives = 88/174 (50%), Gaps = 10/174 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN------GRRPF 54
+GLTADAR +I A+ +H L ++ + +E +T+ + L ++ + RPF
Sbjct: 71 SGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPF 130
Query: 55 GISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
G++ LI G D D +L+ EPSG +Y + A A G ++ + L + +T ++A
Sbjct: 131 GVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH-SSLTLKEA- 188
Query: 115 IKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
L ++ L +V++ + N +++ + ++ + E + E+++++ E
Sbjct: 189 ELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAE 242
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 205 bits (523), Expect = 1e-67
Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 7/172 (4%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL ADAR+LI+RA+IE Q ++LT + P+T++ + + I KQ+YTQ G RPFG+S LI
Sbjct: 79 SGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLI 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G + P+LY+T+PSG E+KA A G V EF EK Y+ ++++ + A + L +
Sbjct: 139 AG--VNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR-DDLSFDDA-MVLGLV 194
Query: 121 ALLEVVQSG--QKNLEIAVM-RHGKPVEMLSVAQIEEYVNEIEKEKEDEAEK 169
A+ ++S +N+E+ + + + +S +++ YV + + +K
Sbjct: 195 AMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 204 bits (521), Expect = 2e-67
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
G DAR RA+ E + + + + + +A L Q YTQ RP G+
Sbjct: 75 NGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTF 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKS------EEMTTEKAT 114
D + P +Y+T+P+G Y +KA ATG + + LE +K E + EK
Sbjct: 135 VSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKV- 193
Query: 115 IKLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKE 162
++ AI +++ + + + +LE+ V K LS IEE + I ++
Sbjct: 194 VEFAITHMIDALGTEFSKNDLEVGVATKDKF-FTLSAENIEERLVAIAEQ 242
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 204 bits (520), Expect = 2e-67
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL DAR+L N + +C L + +E + QK TQS G RP+G+ LI
Sbjct: 74 AGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLI 133
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMT--TEKATIKLA 118
G+D G L + +PSG E A G ++ + +LE+ + IK
Sbjct: 134 IGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAG 192
Query: 119 IRALLEVVQSG---QKNLEIAVMRHGKPVEMLSVAQIEEYV 156
+ A+ + ++ NL IA++ P + + +Y+
Sbjct: 193 VEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 201 bits (514), Expect = 3e-66
Identities = 50/166 (30%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR-----RPFG 55
+GL ADA+ LI++A++E Q+H T + +T+E +T+ ++ L ++ + + RPFG
Sbjct: 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFG 138
Query: 56 ISCLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATI 115
++ L GG D G P+L+ +PSG + + A A G +++ + L++ Y + MT ++A I
Sbjct: 139 VALLFGGVDEKG-PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH-KSMTLKEA-I 195
Query: 116 KLAIRALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
K ++ L +V++ N+E+A ++ G+ M + ++EE + +I
Sbjct: 196 KSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 200 bits (512), Expect = 5e-66
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 10/168 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GLTADA ILIN A+I Q++ T + + +E + R ++ +KQ YTQ G RPFG+S +
Sbjct: 77 AGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIY 136
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D +LY + PSG Y WKA + G + + L+ YK ++M + A I+LA++
Sbjct: 137 AGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK-DDMKVDDA-IELALK 194
Query: 121 ALLEVVQSG---QKNLEIAVMRHGK-----PVEMLSVAQIEEYVNEIE 160
L + S LE A +R G ++ +I++ + +
Sbjct: 195 TLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 198 bits (505), Expect = 4e-65
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G+ D R+L++RA+ Q + L ++P+ + + +A + Q+YTQS G RPFG+S LI
Sbjct: 76 SGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLI 135
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G++ P L+Q++PSG Y+ WKA A G++ + FLEK Y E++ E A I AI
Sbjct: 136 CGWNEGR-PYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN-EDLELEDA-IHTAIL 192
Query: 121 ALLEVV--QSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
L E Q + N+E+ + L+ ++++Y+ I
Sbjct: 193 TLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI 232
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 196 bits (500), Expect = 1e-63
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 8/178 (4%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 79 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 138
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSE-EMTTEKATIKLAI 119
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK E + + +K A
Sbjct: 139 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAA 197
Query: 120 RALLEVV-QSGQKNLEIAV-----MRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
+ + + +K+ E+ + + + ++E ++ +KE + ++ +
Sbjct: 198 KIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDE 255
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 194 bits (495), Expect = 3e-63
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 1 TGLTADARILINRAQIECQ-SHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
+G+ D R+L+++++ S+K + + + +A + Q+ TQS G RPFG+S L
Sbjct: 76 SGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLL 135
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAI 119
I G D LYQ +PSG Y+ WKA A G+ + + FLEK + +E+ E A I +A+
Sbjct: 136 IAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN-DELELEDA-IHIAL 193
Query: 120 RALLEVVQS--GQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEK 169
L E V+ +E+A++ P + + K E
Sbjct: 194 LTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEIND 245
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 192 bits (490), Expect = 1e-62
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL ADAR L + A+ E + + + L+++ +A YT + RPFG S ++
Sbjct: 78 AGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFML 137
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G + + +LY +PSG+ Y + A G++ + + +EK +EMT +K +
Sbjct: 138 GSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM-KEMTCRDI-VKEVAK 195
Query: 121 ALLEV---VQSGQKNLEIAVM-RHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKK 170
+ V V+ LE++ + + I E + KE E ++
Sbjct: 196 IIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDES 249
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 187 bits (476), Expect = 2e-60
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 10/170 (5%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+GL D R L+NR + E S K + P+ + + Q +T N RPFG+S +
Sbjct: 75 SGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIF 134
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFY--KSEEMTTEKATIKLA 118
GG D +G LY EPSG Y+ +K ATG+ ++ + LEK E ++ +A +K A
Sbjct: 135 GGVDKNG-AHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREA-VKQA 192
Query: 119 IRALLEVV-QSGQKNLEIAV-----MRHGKPVEMLSVAQIEEYVNEIEKE 162
+ + + +K+ E+ + + + ++E ++ +KE
Sbjct: 193 AKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE 242
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 122 bits (307), Expect = 4e-35
Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 22/186 (11%)
Query: 1 TGLTADARILINRAQIECQSHKLT--VEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISC 58
G + L + D + Y L +T+ +P+ +
Sbjct: 65 AGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVEL 122
Query: 59 LIGGFDYDG---KPRLYQTEPSG-IYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
+ + G +P LY+ G I E G + + + L++ Y E + A
Sbjct: 123 CVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA-ENASLTDA- 180
Query: 115 IKLAIRALLEVVQSGQ---------KNLEIAVMRHGKPVE---MLSVAQIEEYVNEIEKE 162
+++A+ AL +LE+AV+ +P ++ + ++ + + E
Sbjct: 181 LRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESP 240
Query: 163 KEDEAE 168
+ D
Sbjct: 241 QSDGES 246
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 119 bits (299), Expect = 7e-34
Identities = 29/187 (15%), Positives = 65/187 (34%), Gaps = 20/187 (10%)
Query: 1 TGLTADARILINRAQIECQSHKLT-VEDPVTLEYITRYIA-GLKQKYTQSNGRRPFGISC 58
G + L + + VT + A L +T+ +P+ +
Sbjct: 65 VGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEI 122
Query: 59 LI---GGFDYDGKPRLYQTEPSGIYYEWK-ANATGRSAKTVREFLEKFYKSEEMTTEKAT 114
+ G P+LY+ G + + G + + + + + Y+ ++ E A
Sbjct: 123 CVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR-ADLDLEAA- 180
Query: 115 IKLAIRALLEVVQS-------GQKNLEIAVMRHGKP---VEMLSVAQIEEYVNEIEKEKE 164
+ +A+ AL + +LE+AV+ +P ++ +E+ V
Sbjct: 181 VGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAAAS 240
Query: 165 DEAEKKK 171
+ A + K
Sbjct: 241 ESAPEPK 247
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 96.3 bits (240), Expect = 5e-25
Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + H L + + + KY + G ++
Sbjct: 76 GTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVA 130
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D G L+ G + G + LE +K +++T E+A IKLA A
Sbjct: 131 GVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-QDLTKEEA-IKLASDA 187
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKE 162
+ + SG N+++ VM GK E L E +K
Sbjct: 188 IQAGIWNDLGSG-SNVDVCVMEIGKDAEYLRNYLTPNVREEKQKS 231
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 95.4 bits (238), Expect = 6e-25
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G+ AD + A + + H L+ + +TR + +Y + G S ++G
Sbjct: 47 GVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLVVG 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D +G P+LY+ P G Y A G LE ++ MT E A +L + A
Sbjct: 102 GVDLNG-PQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ-PNMTLEAA-QELLVEA 158
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
+ + SG N++ V+ G E + +
Sbjct: 159 ITAGILSDLGSG-GNVDACVITAGG------AKLQRALSTPTEPVQRAGRYRFA 205
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 93.9 bits (234), Expect = 2e-24
Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + H L + + + KY + G ++
Sbjct: 47 GTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVA 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D G L+ G + G + LE +K +++T E+A IKLA A
Sbjct: 102 GVDPTG-SHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK-QDLTKEEA-IKLASDA 158
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKE 162
+ + SG N+++ VM GK E L E +K
Sbjct: 159 IQAGIWNDLGSG-SNVDVCVMEIGKDAEYLRNYLTPNVREEKQKS 202
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 93.4 bits (233), Expect = 2e-24
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
GL DA++L+ + E + ++L + +E + ++ + + P+ + L+G
Sbjct: 55 GLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKY----MPYMVQLLVG 110
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D P ++ + +G E +TG + V LE Y E+MT ++ + L IRA
Sbjct: 111 G--IDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS-EKMTVDEG-VDLVIRA 166
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
+ Q SG +++AV+ L QIE + ++
Sbjct: 167 ISAAKQRDSASG-GMIDVAVITRKDGYVQLPTDQIESRIRKLGLILHHH 214
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 84.7 bits (210), Expect = 7e-21
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + H L+ + R + + +Y R G + ++G
Sbjct: 47 GTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLG 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G D G P LY P G + G + E ++ +M E+A L A
Sbjct: 102 GVDVTG-PHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR-PDMEEEEA-KNLVSEA 158
Query: 122 LLEVVQ----SGQKNLEIAVMR 139
+ + SG N+++ V+
Sbjct: 159 IAAGIFNDLGSG-SNIDLCVIS 179
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 80.4 bits (198), Expect = 8e-19
Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 21/184 (11%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G A L+ +E + ++ P+T + +A + + + + L+
Sbjct: 112 GTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLV 170
Query: 62 GFDYDG-----KPRLYQTEPSGIYYEWKAN--ATGRSAKTVREFLEKFYKSEEMTTEKAT 114
G+D D R+ + G YE +A A G + + L+K Y + E A
Sbjct: 171 GYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS-PDSDEETA- 228
Query: 115 IKLAIRALLE----------VVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164
++ AI +L + + + +S E I E+
Sbjct: 229 LRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERT 287
Query: 165 DEAE 168
++
Sbjct: 288 EQGG 291
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 78.0 bits (192), Expect = 3e-18
Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 21/184 (11%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G A L+ +E + ++ P+T + +A + + + + L+
Sbjct: 47 GTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGN-LGAAMQGLAVVPLLV 105
Query: 62 GFDYDG-----KPRLYQTEPSGIYYEWKAN--ATGRSAKTVREFLEKFYKSEEMTTEKAT 114
G+D D R+ + G YE +A A G + + L+K Y + E A
Sbjct: 106 GYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS-PDSDEETA- 163
Query: 115 IKLAIRALLE----------VVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164
++ AI +L + + + +S E I E+
Sbjct: 164 LRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQ-AGAVHVSEETTSELARRIVAERT 222
Query: 165 DEAE 168
++
Sbjct: 223 EQGG 226
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 76.3 bits (188), Expect = 2e-17
Identities = 26/170 (15%), Positives = 63/170 (37%), Gaps = 12/170 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + +C+ H+L ++ +++ ++ ++ L +Y + +I
Sbjct: 122 GGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMIC 177
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+ P +Y + G + G L+ YK +++ E A + L R+
Sbjct: 178 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-WDLSVEDA-LYLGKRS 235
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEA 167
+L SG ++ + + + E ++++E+
Sbjct: 236 ILAAAHRDAYSG-GSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGSFN 283
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 72.6 bits (179), Expect = 1e-16
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G D Q Q + + + ++ + ++ ++ K +S RRP+ ++ LIG
Sbjct: 48 GEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVLIG 105
Query: 62 GFD-YDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G+D KP LYQ + G E A G S L+ Y+ +MTTE+ + L
Sbjct: 106 GYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR-PDMTTEEG-LDLLKL 163
Query: 121 ALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIE 153
+ E+ + K + + ++ + + Q +
Sbjct: 164 CVQELEKRMPMDF-KGVIVKIVDKDG-IRQVDDFQAQ 198
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 71.5 bits (176), Expect = 5e-16
Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + +C+ H+L ++ +++ ++ ++ L +Y + +I
Sbjct: 47 GGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMIC 102
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+ P +Y + G + G L+ YK +++ E A + L R+
Sbjct: 103 GYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK-WDLSVEDA-LYLGKRS 160
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDE 166
+L SG ++ + + + E ++++E+
Sbjct: 161 ILAAAHRDAYSG-GSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGSF 207
Score = 71.1 bits (175), Expect = 6e-16
Identities = 10/178 (5%), Positives = 29/178 (16%), Gaps = 13/178 (7%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
A +++ + + + I
Sbjct: 48 DGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLI----DRARLEAQIY 103
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKA-NATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
Y + + + G V + K E +
Sbjct: 104 RLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFET-DPSGAL 161
Query: 121 ALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
+ +E+ + L + ++ + E
Sbjct: 162 IEYKATAIGSGRP-VVMELLEKEYRD-DITLDEGLELAITALTKANEDIKPENVDVCI 217
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 71.5 bits (175), Expect = 1e-15
Identities = 22/184 (11%), Positives = 56/184 (30%), Gaps = 21/184 (11%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G A A +E + ++ P+T +A + + + L+
Sbjct: 104 GTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLA 162
Query: 62 GFDYDG-----KPRLYQTEPSGIYYEWKAN--ATGRSAKTVREFLEKFYKSEEMTTEKAT 114
G+D R+ + +G + + A G + + ++K Y + +
Sbjct: 163 GYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS-QVTDGDSG- 220
Query: 115 IKLAIRALLE----------VVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKE 164
+++A+ AL + ++ + ++I E I + +
Sbjct: 221 LRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG-AVDVPESRIAELARAIIESRS 279
Query: 165 DEAE 168
Sbjct: 280 GADT 283
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 67.6 bits (166), Expect = 1e-14
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G DA+ L +IE +++ E T+ I + L Y P+ + LIG
Sbjct: 47 GSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRY----FPYLVQLLIG 102
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKA-NATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIR 120
G D +G +Y +P G E K ATG + T LE + E+ ++A ++LA+R
Sbjct: 103 GIDSEG-KSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT-PEIGVDEA-VELAVR 159
Query: 121 ALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161
A+ ++ SG +++ + + S ++E+ + + K
Sbjct: 160 AIYSAMKRDSASG-DGIDVVKITEDE-FYQYSPEEVEQILAKFRK 202
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 67.2 bits (165), Expect = 2e-14
Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD +C+ ++L ++ +++ ++ +A + +Y + +I
Sbjct: 47 GGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMIC 102
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D G P LY + G + G + +++ Y ++ E+A LA RA
Sbjct: 103 GWDKRG-PGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS-YDLEVEQA-YDLARRA 159
Query: 122 LLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
+ + SG + + +R +S + + +
Sbjct: 160 IYQATYRDAYSG-GAVNLYHVREDG-WIRVSSDNVADLHEKY 199
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 59.3 bits (144), Expect = 2e-11
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 1 TGLTADARILINRAQIECQSHKLTVED-PVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
G AD L+ R + + + D ++ A Q P+ + +
Sbjct: 55 NGFAADGDALVKRFKNSVKWYHFDHNDKKLS----INSAARNIQHLLYGKRFFPYYVHTI 110
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKS-------------- 105
I G D DGK +Y +P G Y + A G +A + FL+
Sbjct: 111 IAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKK 170
Query: 106 --EEMTTEKATIKLAIRALLEVVQ----SGQKNLEIAVMR 139
+ ++ E+ IKL + + G LEI ++
Sbjct: 171 PLKYLSVEEV-IKLVRDSFTSATERHIQVG-DGLEILIVT 208
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 59.0 bits (143), Expect = 4e-11
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 13/172 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYIT-RYIAGLKQK--YTQSNGRRPFGIS 57
+G +D + + + + E + YI Y + + P +
Sbjct: 87 SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNA 146
Query: 58 CLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK----SEEMTTEKA 113
++ G +G L G+ Y ATG A L K + T + A
Sbjct: 147 IIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVA 206
Query: 114 TIKLAIRALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161
+ + A+ + S +N +A++ + Q+E + K
Sbjct: 207 -EEAIVNAMRVLYYRDARSS-RNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 256
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 56.8 bits (138), Expect = 1e-10
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + + + H + + +P + + +Y R +I
Sbjct: 47 GSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRY-----REDLMAGIIIA 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D ++Y G+ G + + +++ Y+ E MT E+ ++ A
Sbjct: 102 GWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR-EGMTKEEC-LQFTANA 159
Query: 122 L 122
L
Sbjct: 160 L 160
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 56.1 bits (136), Expect = 2e-10
Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 13/151 (8%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
TGL D L + + +KL E + E T+ ++ + P+ + ++
Sbjct: 53 TGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG----PYFVGPVV 108
Query: 61 GGFD-YDGKPRLYQTEPSGIYYEWKA-NATGRSAKTVREFLEKFYKSEEMTTEKATIKLA 118
G + GKP + + G E K +G ++ + E Y+ + E +
Sbjct: 109 AGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE-PNLEPEDL-FETI 166
Query: 119 IRALLEVVQ----SGQKNLEIAVMRHGKPVE 145
+ALL SG + +++ + V+
Sbjct: 167 SQALLNAADRDALSG-WGAVVYIIKKDEVVK 196
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 55.8 bits (135), Expect = 4e-10
Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 13/172 (7%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYIT-RYIAGLKQK--YTQSNGRRPFGIS 57
+G +D + + + + E + YI Y + + P +
Sbjct: 54 SGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNA 113
Query: 58 CLIGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSE----EMTTEKA 113
++ G +G L G+ Y ATG A L K E + T + A
Sbjct: 114 IIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVA 173
Query: 114 TIKLAIRALLEVVQ----SGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEK 161
+ + A+ + S +N +A++ + Q+E + K
Sbjct: 174 -EEAIVNAMRVLYYRDARSS-RNFSLAIIDKNTGLTFKKNLQVENMKWDFAK 223
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 55.3 bits (134), Expect = 4e-10
Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G D Q Q +K+ ++ + + R P+ ++ L+
Sbjct: 48 GEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTR--RNLADCLRSRTPYHVNLLLA 105
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D P LY + + A G A L+++Y ++ E+A ++L +
Sbjct: 106 GYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT-PTISRERA-VELLRKC 163
Query: 122 LLEVVQ----SGQKNLEIAVM 138
L E+ + + + ++
Sbjct: 164 LEELQKRFILNL-PTFSVRII 183
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 53.0 bits (128), Expect = 2e-09
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 8/122 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G ADA+ + + A + + H L +E+P + + + KY R ++
Sbjct: 47 GSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHLIVA 101
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D G+ G + + +++ YK MT E+ + A
Sbjct: 102 GWDQRE-GGQVYGTMGGMLIRQPFTIGGSGSSYIYGYVDAAYK-PGMTPEEC-RRFTTNA 158
Query: 122 LL 123
+
Sbjct: 159 IT 160
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 51.8 bits (125), Expect = 8e-09
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 8/123 (6%)
Query: 2 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 61
G AD + + + Q + + P T A + ++ N + ++
Sbjct: 56 GSAADTQAIADIVQYHLELYTSQYGTP-----STETAASVFKELCYEN-KDNLTAGIIVA 109
Query: 62 GFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRA 121
G+D K +Y G ++ G + + + +K ++ E M+ E+ + +
Sbjct: 110 GYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR-ENMSKEET-VDFIKHS 167
Query: 122 LLE 124
L +
Sbjct: 168 LSQ 170
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 50.2 bits (121), Expect = 3e-08
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
GL D + + R + ++L + + +A L + P+ +I
Sbjct: 54 AGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG----PYYTEPVI 109
Query: 61 GGFDYDG-KPRLYQTEPSGIYYEWKA-NATGRSAKTVREFLEKFYKSEEMTTEKATIKLA 118
G D KP + + G +G A+ + E ++ M + +
Sbjct: 110 AGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE-PNMDPDHL-FETI 167
Query: 119 IRALLEVVQ----SGQKNLEIAVMRHGKPVE 145
+A+L V SG + + ++ K
Sbjct: 168 SQAMLNAVDRDAVSGM-GVIVHIIEKDKITT 197
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 48.0 bits (115), Expect = 2e-07
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 1 TGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLI 60
+G D L + + +K + +T I ++ + P+ + +I
Sbjct: 55 SGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF----PYYVYNII 110
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKS--------EEMTTEK 112
GG D +GK +Y +P G Y A G ++ ++ L+ ++ ++
Sbjct: 111 GGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDR 170
Query: 113 ATIKLAIRALLEVVQ----SGQKNLEIAVMR 139
A ++L + + +G L I ++
Sbjct: 171 A-MRLVKDVFISAAERDVYTG-DALRICIVT 199
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 42.6 bits (101), Expect = 1e-05
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 11/145 (7%)
Query: 1 TGLTADARILINRAQIECQSHKL-TVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 59
+G AD + L +L + I ++ P + +
Sbjct: 54 SGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMN--PLWNTMV 111
Query: 60 IGGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYK-SEEMTTEKATIKLA 118
IGG+ DG+ L + G+ YE + ATG A + L + + ++ +A L
Sbjct: 112 IGGYA-DGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEA-RDLV 169
Query: 119 IRALLEVVQ----SGQKNLEIAVMR 139
R + + S + A +
Sbjct: 170 ERCMRVLYYRDARSY-NRFQTATVT 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-05
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 74/200 (37%)
Query: 10 LINRAQIECQSHKLTVEDPVTLEYITRYIAGLK-QKYTQSNGRRP-------FGISC-LI 60
LI + + + E + + GL ++ ++ P ISC LI
Sbjct: 187 LIKFSAETLSE---LIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 61 GGFDYDGKPRLYQTEPSGIYYEWKANATGRSAKTVREFL--------------------- 99
G + Q +Y A G + +R +L
Sbjct: 242 G---------VIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 100 -EKFYKSEEMTTEKATIKLAIRAL----LEVVQS-GQKNLEIAVMR------HGKPVEML 147
E F+ S ++ AI L + ++ +L +++ G P ML
Sbjct: 289 WESFFVS---------VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 148 SV-----AQIEEYVNEIEKE 162
S+ Q+++YVN+
Sbjct: 340 SISNLTQEQVQDYVNKTNSH 359
Score = 34.6 bits (79), Expect = 0.011
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 28/144 (19%)
Query: 26 EDPVT-LEYITR---YIAGLKQKYTQSNGRRPFGISCLIGGF--DYDGKPRLYQTEPSGI 79
++P T E + + Y++ L + G+ ++ + F Y L + +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTEFENCY-----LEGNDIHAL 104
Query: 80 YYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLAIRALLEVVQSGQKNLEIAVMR 139
+ K +E ++ + + M K + AL V G L +A+
Sbjct: 105 AAKLLQENDTTLVK-TKELIKNYITARIMAKRPFD-KKSNSALFRAVGEGNAQL-VAIF- 160
Query: 140 HGKPVEMLSVAQ--IEEYVNEIEK 161
G Q ++Y E+
Sbjct: 161 -G--------GQGNTDDYFEELRD 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 41/175 (23%)
Query: 8 RILINRAQIECQSHKLTVEDPVTLEYITRYI------AGLKQKYTQSNGRRPFGISCLIG 61
R +++ I + P +Y +I ++ T R F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVF------- 497
Query: 62 GFDY---DGKPRLYQTEPSGIYYEWKANATGRSAKTVREFLEKFYKSEEMTTEKATIKLA 118
D+ + K R T W NA+G T+++ KFYK + +
Sbjct: 498 -LDFRFLEQKIRHDST-------AW--NASGSILNTLQQL--KFYK-PYICDNDPKYERL 544
Query: 119 IRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQK 173
+ A+L+ + ++NL K ++L +A + E I +EA K+ Q+
Sbjct: 545 VNAILDFLPKIEENL-----ICSKYTDLLRIALMAED-EAI----FEEAHKQVQR 589
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2,
structural genomics, protein structure initiative; 2.04A
{Streptomyces coelicolor} SCOP: c.94.1.1
Length = 291
Score = 30.4 bits (68), Expect = 0.29
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 111 EKATIKLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEI 159
E + A L + +E + + + +Y +
Sbjct: 200 EPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAF-DEDTLAKYFTTL 247
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.50A
{Geobacter sulfurreducens pca}
Length = 285
Score = 29.4 bits (65), Expect = 0.48
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 92 AKTVREFLEKF-YKSEEMTTEKATIKLAIRALLEVVQSGQKN 132
A+ + + + + T+ AT I A+ + ++ K
Sbjct: 33 AEDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKG 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.52
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
Query: 93 KTVREFLE---KFYKSEEMTTEKATIKLAIRALLE 124
+ +++ L+ K Y + + A LAI+A +E
Sbjct: 20 QALKK-LQASLKLYADD---SAPA---LAIKATME 47
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 28.7 bits (65), Expect = 0.84
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 120 RALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
RALL + + ++ G LSV Q E + + AE
Sbjct: 179 RALLMLEPEDRLWGLKEILEKG-----LSVRQAEALRERLAMAPKRSAEGSHHHH 228
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 27.5 bits (62), Expect = 2.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 147 LSVAQIEEYVNEIEKEK-EDEAEKKK 171
LS IE V E EK K EDE ++ K
Sbjct: 510 LSKEDIERMVQEAEKYKAEDEKQRDK 535
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 27.2 bits (59), Expect = 3.3
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 93 KTVREFLEKFYKSEEMTTEKATIKLAIRAL 122
+ ++L FY + + +K ++ +
Sbjct: 19 ELAVQYLNTFYGCPKESCNLFVLKDTLKKM 48
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex,
hydrolyse, matrix metalloproteinase, gelatinase A,
hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens}
SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1ks0_A 1cxw_A
Length = 421
Score = 27.2 bits (59), Expect = 3.7
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 93 KTVREFLEKFYKSEEMTTEKATIKLAIRAL 122
+ ++L FY + + +K ++ +
Sbjct: 17 ELAVQYLNTFYGCPKESCNLFVLKDTLKKM 46
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1,
STR genomics, PSI-2, midwest center for structural
genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Length = 174
Score = 26.3 bits (58), Expect = 4.2
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 135 IAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKK 171
A R G ++ E V+++ + ++
Sbjct: 26 TAFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERD 62
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 26.7 bits (59), Expect = 4.5
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 118 AIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQKK 174
A+R ++ + E A + + +L+ +IE + EI + D ++
Sbjct: 532 ALRDIVACMADEGLAAEDAARKLN--LLLLAEDEIESIIQEIVEGNLDMISERGMGA 586
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 26.4 bits (58), Expect = 5.5
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 116 KLAIRALLEVVQSGQKNLEIAVMRHGKPVEMLSVAQIEEYVNEIEKEKEDEAEKKKQK 173
+ E+ ++ K+ G + +LS ++ + E+ ++ + + K
Sbjct: 542 EAFEEIFKELARNPSKSAREVAEEKG--LTLLSEEEVTRIIEEVIQQNIEVVKAKGMG 597
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 26.0 bits (58), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 147 LSVAQIEEYVNEIEKEK-EDEAEKKK 171
L+ +I+ V E EK ED + K K
Sbjct: 119 LTQEEIDRMVEEAEKFASEDASIKAK 144
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 25.6 bits (57), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 147 LSVAQIEEYVNEIEKEK-EDEAEKKK 171
LS IE +N+ +K +D+A+K+K
Sbjct: 119 LSPEDIERMINDADKFAADDQAQKEK 144
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 25.6 bits (57), Expect = 5.9
Identities = 6/26 (23%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 147 LSVAQIEEYVNEIEKEK-EDEAEKKK 171
L+ + I+ V+E ++ + ED ++++
Sbjct: 119 LTQSDIDRMVHEAKQFEKEDGEQRER 144
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 7.6
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 149 VAQIEEYVNEIEK------------EKEDEAEKKKQKK 174
+AQ + E E ++ D A K +++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQE 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,651,860
Number of extensions: 153712
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 87
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.4 bits)